>input_sequence_29955
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-----------------------------A---------------TGTCGTCGTCGTCTTCCGAGGAGGAGGCGGCGC--
----------GGTCGAGGAGCGCGCCGGCCCCAGGCAAGCGCGGTTCGGCGAGCGCGGCGGCCCGCGGCAAGTCCGGTTC
GGCGGGTGCGAGGGTCCCCGGCAAGGCCCGCT---------CGGTCGCCTCCGGCAAGTCGGTCTGGGCCGAGATGGGCG
TGGCGCCCTTCCAGGACGGGCAGTACGTGCGCCTCCGCAACCGCGGCCGCGGCGGTTACCTCTGCGCCGACGAGACGGGG
CGGGGCGTCTCCATCGACCACCGCCGCGAGATGGTCAACACGGCGTGGGCCGTGATGGTCCTGGAGACCGACACCAACTA
CTTCGTCCTGCTCCGCGGCGCCTACGGCCGGCACCTCGCCGTCACGCGCGACGAGGCGGGGCCCGGCCACATCGGCTTCG
ACGCCGCCCAGTGCGCCTTCGACGAGCCGGAGGACACCCACGTCATGTGGTGGACCACCCCGGGGAAGAAGGGCAGCGTC
GTGCTGCTCCACGGCACGTCGGCCAGGCTCAGCGCGCTCCGGGCCAACGGTCGGTTCCGCCGCTGGCACAGGCGCGTCAC
CGTCGAGGCCATCAACCGCAGCCGCGTCACCTCGATGATGGAGTGGGAGGTTCAGGTCATCCCCATGAGGGTGGAGAGGC
CACCGTACCAGCTGCGACCAGGAGGACCCGATATTGTAAGATCTT---CACCCGCACCCTTCCCCCTTGCACAATTCTGG
GTGGTCCTGAATAAATTGGAGTGCTTAAGCTTTAGGCTATGGATTATTTCTGACAATGTCGCAACAAGTGCTGCTAAGCT
GTTTACACCACTTCTATGGCGAAATTTTGGGATTGTTTGCTCAAATAGAACAATGTATGTGGATGTGTGGCCAATTCTTG
CTTGAATAGCCCAGTAATTATTGCTGATTACTACAGCACAGGTCTTGCACCATAAGCTTTCAATTCGTGTTGCGTATTGG
GTACTTTAGAGGACGATCCCTGCTGAATTATTAGTCTGATGATAATTGGATCCTCTGTTGATAGCTACTGCGGTAGTAGT
TGACATTGTTAAATACCGGATTATTTTCATTTCCCTGTAAATGCTTCAATCTG-ATAATTGGTGCTGAAGTAGTTCCCTT
CATGATTCAGGTGTTAATATTTTGAATTGGTTCATTAGAGGACTGATCATGTTGTGTCATCTCATCTATGCCTTGATTTG
TGTCGCCTAAGCACTTTTCTGCAATTTCCATGAGCAGCCATGGCACCAAGGCTCTGAAGAGACTGTGCAAGTCAATTTCG
TCGTGGCAGATGATAACGGGAGCACGGATGGGCAGGGCAGGGAAGCTCTCACGCTCCATGGCAGGAGTCTGATGGGGCTG
GGCAATGAACTGGCGCAGCGGCTGGGCGACGGCCTCAACTTCCAGGACATCACCCTCTGCATTCAGGCAGGCAACCTTGC
GCAGCCCACCGTTCTGCTCACCGACCTGCCCCACAGAGACGACCCCGTTGACATCGTGGTGTTCAGAGTTGGCACACCAG
GTGAGAACTGTGCACCCATTTTAGTAGTACTCTGCACGTCTGCTCTGCTGTTGGAAGATGGAACTATGCATTTTCTCTTT
AGATACAAACGCCACACTG-------GTCACATGACAAGTCCATGTAACTGAAGAAATTAGGAAGAAACTTGTAAATTAG
GATCAAGAATCCAATTGTTCATCTGATATCTTGACTTCGGTGTATAGGTAGCATCTGATATTTCAAACGATTGATGCGAA
AATACATGGGATTTGTAATGTTTTTGCATAATATTGTGCACTAATTCCTGTATTAACTTTTTTTTGGGAATT--------
------------------CCTGTATTAACTTGATGCTAAATAAGTACTCTCTTAAACTGTTTGATAAGTTAATTACGCTA
CTTTAGAGG-TTGATCACTCGCATTTGTTTTTGAATTTAGTTGGTTTATTGTCAGCCCTTGGTCCTCACTGTAGAACAAA
TCTACCCGCAACCAA-GTTAAGTATTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GTTTTCCCATGTTCAATCATCCCGCCTGATACTTTGATATGTGTTGTG
TTCGGTCCAAAGCATGTGCTCTCAGTGACAGCAAATATTCAGTTTAGCTGCTGCCTGCTGGACCTGTAGTAGTTTAACGT
GTGCTTATAGTCAAAGGTA--TCTAGCTAGCCAGTGTACATAAACAGACGTAAATAAAATGCTGAGTAGCTTATACTTTA
TGCTGATACAAGCAATCGACGGGCTGAAAACACTTACGTATGAAATGACACCCAGTTTTGTTCCTGTACCCTGAGAAAAT
ATGAACTTGCAGAATCCTA-----TTATGTTATCAATGTAAAATCTGCTGTTCCTTTCATTCATACTATATGCTGATGTT
CTACTTAGACAATCTTAAATGCCAAGCTATTTCTGAAATAGACTTTTACTTATGTTATCTTCACACATGTCCCATTCCAT
GAGCGACCATTGTGTTGT-------------GATTTTGAGGAAAATAGTGTTATATGATAATGTATTAGTGTTCTTCTTT
GCACCACCTCCCGCGCATATGGCTTGGATTATCTTGCTTACTGTTTCTGACCTCTGGCCTCTATCACTCGGTTCCAGGGC
ATGACCGACTGCTGTTTCCAGATCTTGATGCTGAATAG------------------------------------------
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---------------
>chr4B_1_TraesCS4B01G052800
GCGACGGGTTCAAGGACAATTATGCAAGTGGCTTGATGTATAAAAATGGACGCATCGATGCACATATTTGTCT-------
---ATATATGTGTGATATAATTGATGCACGCATATGTATATATAACTTTTTGGACTTCTTTTTTAAAGAATT--ACAAGA
GGTTCGAGGGTCGACCTCAGTGAGAAGCTTCCAA----------------------CTCGTAGAGTACAGTGCGGTCTAC
-GGATCAGGTAGCCCGGGC-TTTGACCCAGCAAAAAGGGCTGGGTTTGGCCTACAACGCAATTAAACC------------
GGATT---CCAAATTCCCAAGTCCAAACAAGTCCGGTGTCTGTCACTCTCGCCCTAGACCGCAGGCCCACCGCTGTCGCC
ACACCACCCA--CACCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CAACGTTTTC
GTTGGACGCACCGCCGCGCTGTTCAAGCGACGTACACTACTGCTACTCCGGTCGCCGTCCCTCCGCCCCAATCAGGCAAC
CACCCTGCTCAACAACTACCCACCCCACCCCACCCCACCCCCACGCCCTCGCCCTCCTCCGTCCTTCGCGGCGCGGCGCC
TCAGCCACCCGCGGGCCGTCGATCCCTCCCCTCGCCGAGCCCCACGGCCGCGGCCCGGCGGCCTGGAGCGCCTGACCTGC
CGGAGACCGGAGT-------CATGGTCAGGGCGGCGGCCGGGGGAACAGGAGAGTATC------ATCTTCGCCGGCGCGA
CGCG---ACGAGGAGGCGGCGGCCCGGGTCGTCGACGGGGTCAACCAACTTCTTCCTCGGCAAGCCAGGCGGGGCCCACG
TGGCGCGCGCGGCACGGCCAGCTGGCGGGCCCCACGCGTCAGCGGGCGGAACCT-CCTGCGCCTGCGCGTTGGATTCGCC
GCCCCTCCCCTCCGC-----GTGCGGGGAGCTTATTTAAACGCCCCCCGCCTTGGCTCGGAGCTACAGTGGACGATAACC
G-CCGCGGCAACAAACATTCCTCCTCCCTCTTTGCCTCTCCC-------CCT-----------CGCTCGCTCGCCGCTCC
CCGCGCATGATCCACTC---CCTCTAGCCA---------------TGTCGTCGTCGTCTTCCGAGGAGGAGGCGGCGC--
----------GGTCGAGGAGCGCGCCGGCCCCAGGCAAGCGCGGTTCGGCGAGCGCGGCGGCCCGCGGCAAGTCCGGTTC
GGCGGGTGCGAGGGTCCCCGGCAAGGCCCGCT---------CGGTCGCCTCCGGCAAGTCGGTCTGGGCCGAGATGGGCG
TGGCGCCCTTCCAGGACGGGCAGTACGTGCGCCTCCGCAACCGCGGCCGCGGCGGTTACCTCTGCGCCGACGAGACGGGG
CGGGGCGTCTCCATCGACCACCGCCGCGAGATGGTCAACACGGCGTGGGCCGTGATGGTCCTGGAGACCGACACCAACTA
CTTCGTCCTGCTCCGCGGCGCCTACGGCCGGCACCTCGCCGTCACGCGCGACGAGGCGGGGCCCGGCCACATCGGCTTCG
ACGCCGCCCAGTGCGCCTTCGACGAGCCGGAGGACACCCACGTCATGTGGTGGACCACCCCGGGGAAGAAGGGCAGCGTC
GTGCTGCTCCACGGCACGTCGGCCAGGCTCAGCGCGCTCCGGGCCAACGGTCGGTTCCGCCGCTGGCACAGGCGCGTCAC
CGTCGAGGCCATCAACCGCAGCCGCGTCACCTCGATGATGGAGTGGGAGGTTCAGGTCATCCCCATGAGGGTGGAGAGGC
CACCGTACCAGCTGCGACCAGGAGGACCCGATATTGTAAGATCTT---CACCCGCACCCTTCCCCCTTGCACAATTCTGG
GTGGTCCTGAATAAATTGGAGTGCTTAAGCTTTAGGCTATGGATTATTTCTGACAATGTCGCAACAAGTGCTGCTAAGCT
GTTTACACCACTTCTATGGCGAAATTTTGGGATTGTTTGCTCAAATAGAACAATGTATGTGGATGTGTGGCCAATTCTTG
CTTGAATAGCCCAGTAATTATTGCTGATTACTACAGCACAGGTCTTGCACCATAAGCTTTCAATTCGTGTTGCGTATTGG
GTACTTTAGAGGACGATCCCTGCTGAATTATTAGTCTGATGATAATTGGATCCTCTGTTGATAGCTACTGCGGTAGTAGT
TGACATTGTTAAATACCGGATTATTTTCATTTCCCTGTAAATGCTTCAATCTG-ATAATTGGTGCTGAAGTAGTTCCCTT
CATGATTCAGGTGTTAATATTTTGAATTGGTTCATTAGAGGACTGATCATGTTGTGTCATCTCATCTATGCCTTGATTTG
TGTCGCCTAAGCACTTTTCTGCAATTTCCATGAGCAGCCATGGCACCAAGGCTCTGAAGAGACTGTGCAAGTCAATTTCG
TCGTGGCAGATGATAACGGGAGCACGGATGGGCAGGGCAGGGAAGCTCTCACGCTCCATGGCAGGAGTCTGATGGGGCTG
GGCAATGAACTGGCGCAGCGGCTGGGCGACGGCCTCAACTTCCAGGACATCACCCTCTGCATTCAGGCAGGCAACCTTGC
GCAGCCCACCGTTCTGCTCACCGACCTGCCCCACAGAGACGACCCCGTTGACATCGTGGTGTTCAGAGTTGGCACACCAG
GTGAGAACTGTGCACCCATTTTAGTAGTACTCTGCACGTCTGCTCTGCTGTTGGAAGATGGAACTATGCATTTTCTCTTT
AGATACAAACGCCACACTG-------GTCACATGACAAGTCCATGTAACTGAAGAAATTAGGAAGAAACTTGTAAATTAG
GATCAAGAATCCAATTGTTCATCTGATATCTTGACTTCGGTGTATAGGTAGCATCTGATATTTCAAACGATTGATGCGAA
AATACATGGGATTTGTAATGTTTTTGCATAATATTGTGCACTAATTCCTGTATTAACTTTTTTTTGGGAATT--------
------------------CCTGTATTAACTTGATGCTAAATAAGTACTCTCTTAAACTGTTTGATAAGTTAATTACGCTA
CTTTAGAGG-TTGATCACTCGCATTTGTTTTTGAATTTAGTTGGTTTATTGTCAGCCCTTGGTCCTCACTGTAGAACAAA
TCTACCCGCAACCAA-GTTAAGTATTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GTTTTCCCATGTTCAATCATCCCGCCTGATACTTTGATATGTGTTGTG
TTCGGTCCAAAGCATGTGCTCTCAGTGACAGCAAATATTCAGTTTAGCTGCTGCCTGCTGGACCTGTAGTAGTTTAACGT
GTGCTTATAGTCAAAGGTA--TCTAGCTAGCCAGTGTACATAAACAGACGTAAATAAAATGCTGAGTAGCTTATACTTTA
TGCTGATACAAGCAATCGACGGGCTGAAAACACTTACGTATGAAATGACACCCAGTTTTGTTCCTGTACCCTGAGAAAAT
ATGAACTTGCAGAATCCTA-----TTATGTTATCAATGTAAAATCTGCTGTTCCTTTCATTCATACTATATGCTGATGTT
CTACTTAGACAATCTTAAATGCCAAGCTATTTCTGAAATAGACTTTTACTTATGTTATCTTCACACATGTCCCATTCCAT
GAGCGACCATTGTGTTGT-------------GATTTTGAGGAAAATAGTGTTATATGATAATGTATTAGTGTTCTTCTTT
GCACCACCTCCCGCGCATATGGCTTGGATTATCTTGCTTACTGTTTCTGACCTCTGGCCTCTATCACTCGGTTCCAGGGC
ATGACCGACTGCTGTTTCCAGATCTTGATGCTGAATAGAAGAGACGGGTAGGATCAGACAAGCATGAATTCTTCCCCTGG
ACAGTACTGTCAACGCCTCCACAATTTTACAGCAGAGTGATGGCCTGACAAGGATTAGCAGTTTACCTTCTTATCACTGA
ACAGTTCATACAATACAGTGTGTAGGGTTTCCTCTAGAATAGTCACCCAGTTCCGGAAAAGTGCAGGTTATGCGCGCTTC
TTTGCCACTTCACATTTGGAACACTAGGAGACGACGCTATTTGTTCGGTGTTTCTGAAACTTCAGAGAAATTAAACAAGC
GCTGCTGGCTTGTAGGAACAAAATACGTTGAAAGTGCTGCCTATAGTTGATTTTTCCTGGTTATATATCTGTTATGATAT
CATTCTCACCTGGGAGTTGTTGGTTGCTTTCTTCAGCAGCATCCTTCTCACTTCCAGATTGAGTATTCTGTTACCTTTCG
AGAGTAGGAAATCCCATTTAGTAGTGGAAACGTTGCAGGCTGTGTTAGCATTCAGAAAGCTACTCCCTCTGCCGT-----
------------------------------------TAGTGATCTA-----------------AACGATTTTATATTAGT
TTAGAGAGTACAATATATGCGTACATAATTGGGCCTTATGACCCAACAAGAATAAAAAACAAAGCATCTATAGCTCTAGA
ATGAGTTAATCACAATTCTATTTTAGCAGTGCATTCAGCCAAGACTTGTTTTGAACAGGGACTTAGACTTCACGAATTAT
ATTCCGAAAAAAATACACAGCACATACAGAAGACTCATGGTTGCATTGAACAGACTCT----------------------
-GAAGGACAGATACACTGCAGAAACGGCCAGTCTAGCAATA-------ACTTTGCAATCTAATTAT---ACTAAAGATAA
TTCTTGACACGTTGTTAAAGAAAACCAAAG-AAAATATTTATTGCTACATTATGGCATCTCCAACC-TGACCCGCAAATT
TGTTC-GGCATCCGTCCGCAGACAGGT-GGACCACTCCACAGACACTGATTCTG-AGGCCG-CCGTCCAACACTGCCCAC
ATACATCCGACCCCT
>chr4A_1
GCCACGGGTCCAAGTACAATTATGTAGGTGGCTTGATGTATAA-AATGGACGCAACTATATTTCTTTGACAAATATATGT
GGCATATATGTGTGATATAATTTTATGC-----ACGCATTTATAGTTTTTTGTTTTTGTTTTTTGAGAATAATAACAAGA
GGTTCGAGGGTCGACCTCAGTGAGAAACTTCCAACTCTCCTTTTTTTTTTTTTGAGCTCCTAGAGTACACTGCGGTCTAC
GGGATCAGGTGGCCTGGAC-TTTGACCCAGCAAAAAGGGCTAGGTTTGGCCTACAGCGCAATTAAACCCACCCGGTGGCT
GGATT---CCAAATTCCCAAGTCCAAACCAGTCCGGTGTCTGTCACTCTCGCCCTAGACCGCAGGCCCACCGCTGTCGCC
ACACCCCCACCGCACCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CAACGTTTTC
GTTGGACGCACCGCCGCG-----------ACGTACACTACTGCTACTCCGGTCGCCGTCCCTCCGCCCCAATCAGGCAAC
CACCCTCCTCAACAACTACCCACCCCACCCCACCCCACCACCAC-CCCTCGCCCTCCTCCCACGTCCGGCCGCCTCCGCC
CTCGCCGGACCAATT--GTCGATCCCGCCCCTCGCCCGGCCCGG----CGAGGCCTGGCGGCGCAGAGCACCTGACCCGC
CGGA-------GT-------CATGGTCAGGACGGCGCCCGGGGAAACAGGAGGGTATCCTCATCATCGTCGCCGGCGAGG
AGCATCCACGAAGAGGCGGCGGCCCGGGTCGTCGACGGGGTCAACTC----CTTCCTCGGCAAGGCAGGCGGGGACCACG
TGGCGCGCGCGGCACGGCCAGCTGGCGGGCCCCACGCGTCAGCGGGCGGAACCTCCCTGCGCCTGCGCGTTGGATTCGCC
G-----CCCCTCCGC-----GTGCGGGGAGCTTATTTAAACGCCCTCCGCCTTGGCTCGGCGCTACAGTGGACGATAACC
G-CCGCGGCAACAAACATTCCTCCTCCCTCTTTGCCGCTCCC-------CTCTCCCCCTCGCCCGCTCGCTCGCCGCTCC
CCGCGCATGATCCACCTCCTCCTCTAGCCATGTCGCCGCCGTCGCTGCCGCCGTCGTCTTCCGAGGAGGAGGCGTCCCGC
GGCAAGCCCGGTTCGGCGAGCGCGATGGCCCCCGGCAGGTCCACCTCGGCGAGCGCGGCGGCCCGCGGGGAGTCCGGTTC
GGCGGGCGCGAGGGCCCCCGGCAAGTCCGGTGCGGCGGGTGCGGTGGCCTCCGGCAAGTCGGTCTGGGCCGAGATGGGCG
TGGCGCCCTTCCAGGACGGGCAGTACGTGCGGCTCCGCAACCGCGGCCGCGGCGGTTACCTCTGCGCCGACGAGACGGGG
CGGGGCGTCTCCATCGACCGCCGCCGCGAGATGGTCAACACGGCGTGGGTCGCGCAGGTCCTGGAGACCGACACCAACTA
CTTCGTCCTGCTCCGCGGCGCCTACGGCCGCCACCTCGCCGTCACGCGCGCCGAGGCGGGGCCCGGCCACGTCGGCTTCG
ACGCCGCCCAGTGCGCCTTCGACGAGCCGGAGGACTCCCACGTCATGTGGTGGACCACCCCGGGGAAGAACGGCAGCGTC
GTGCTGCTCCATGGCACGTCGGCCAGGCTCAGAGCGCTCCGGGCCAACGGTCGGTACCGCCGGTGGCACAGGCGCGTCAC
CGTCGAGGCCATCAACCGCTCCCGCGTCACTTCGATGATGGAGTGGGAGGTTCAGGTCATCCCCATGAGGGTGGAGAGGC
CACCGTACCAGCTGCGACCAGGAGGCCCCGATATTGTAAGATCTTGTTCACCCGCACCCTTCTCCCTTGCACAATTCTGG
GTGGTCCTGAATAAATTGGAGTGCTTAAGCCTTAGGCTATGGATTATTTCTGACAATGCTGCAACAAGTGCTGCTAAGCT
GTCTACACCAGTTCTATAGCGAAATTTTGGGGTTGGTTGCTCAAATAGAACAATGCATGTGGATGTGCGGTCAATTCTTG
CTTGAATAACCCAGTAGTTATTGCTGATTACTGCAGCACAGGTCTTGCACCATAAGCTTTCAATTCATGTTGCGTATTGG
GTACTTCAGAGGACGATCCCTGCTGAATTATTAGTCTGATGATAATTGGATCCTCTGATGATAGCTACTGCTGTAGTAGT
TGGCATTGTGAAATATCGGATTATTTTCATTTCCCTGTAAATGCTTCAATCTGGATAATTGGTGCTGAAGTAGTTCCCTT
CATGATTCAGGTGTTAATATTTTGAATTGGTTCATTAGAGGACTGATCATGTTGTGTCATCTCATCTATGCCTTGATTTG
TGTCGCCTAAGCGCTTTTCTGCAATTTCCATGAGCAGCCATGGCACCAAGGCTCTGAAGAGACTGTGCAAGTCAATTGCG
TCGTGGCAGATGATAACGGGAGCACGGATGAGCAGGGCAGGGGAGCTCTCACGCTCCATGGCAGGAGTCTGATGGGGCTG
GGCAATGAACTGGCGCAGCGGTTGGGCAACGGCCTCAACTTCCAGGACATCACTCTCTGCATTCAGGCAGGCAACCTTGC
GCAGCCCACCGTTCTGCTCACCGACCTGCCCCATAGAGACGACCCCGTTGACATCGTGGTGTTCAGAGTTGGCACACCAG
GTGAGAACTGCACTCCCATTTTAGTAGTACTCTGCACGTCTGCTCTGCTGTTGGAAGATGGAACTATGCATTTTCTCTTC
AGATACAAACGCCACACTAGTGACTAGTCACATGACAAGTCCATGTAACTGAAGAAATTAGGAAGAAACTTGTAAATTAG
GATCAAGAATCCAATTGTTCATCTGGTATCTTGAGTTCGGTGTGTAGGTAGCATGTGATATTTCAAACGCTTGATGCGAA
AATTCGTGGGATTTATAATGTGTTTGCATAATGTTGTGCACT--------------------------AATT--------
------------------CCTGTATTAACTTGATGCTACATAAGTACTCTCCTTTGGTTTGGAGGAATTTCATAGGAATT
TTAGAGGATAGGATTCTTATAGGATTTTTTTCTTTAGAGCCCTTTGGTTCATAGGAATGGATTCCTATTCCTACATAGGA
TTGATTCCTATCCTCCACATTTCATAGGAAAATAAAAATGAGCCTAGACTCAATGGAAAAATTCCTTTGGTGTCAACCAA
ATGACATCTCGTTTACTATTCCTACTCATAGGATTTGAGATACATGTCATCTCATTTCCTATAAAATTCCTATTCCTATG
ATAATCCTATCCTATGAACCAAAAGAGGCACTGTTTTCCCATGTTCAATCATCCCGTCTGATACTTTGATATGTGTTGTG
TTCGGTCCAAAGCATGTGCTCTCAGTGACAGCAAATATTCAGTTTAGCTGCTGCCTACTGGACTTGTAGTAGTTTAACGT
GTGCTGATAGTCAAAGGTA--TCTAGCTAGCCAGTGTACATAAACAGACGTAAATAAAATGCTGAGTAGCTTATACTTTA
TGCTGATACAAGCAATCGACGGGCTGAGAACACTCACGTATGAAATGACACCCAGTTTTGTTCCTGTACCCTGAGAAAAT
ATGAACTTGCAGAATCCCA-----TTATATTATCAATGTAAAATCTGATGTTCCTTTCATTCATACTATATGCTGATGTT
CTACTTAGACAATCTTAAATGCCAAGCTGTTTCCGAAATAGACTTCTACTTATGTTATCTTCACACATATCCCATTCTAT
GAGCGCCCATTGTGCTGT-------------GGTTTTGAGGAAAATAGTGTTATATGATAATGTATCAGTGTTCTTCTTT
GCACCACGTCCTGAGCATATGACTTCGGTTATCTTGCTTACTGTTTCTGACCTCTGACCTCTATCACTCTGCTCCAGGAC
ATGACCGACTGCTGTTTCCAGATCTTGATGCTGAATAGAAGAGAAGGATAGGATCAGACAAGAATGAATTCTTCCCCTGG
ACAGTACTGTCAACGCCTCCACAATTTTACAGCAGAGTGATGGCCTGACGAGGATTAGCAGTTTACCTTCTTATCACTGA
ACAGTTCATACAATACAGTGTGTAGGGTTTCCTCTAGAATAGTCACCCAGTTCCGGAAAAGTGCAGGTTATGCGCGCTTC
TTTGCCACTTCACATTTGGAACACTAGGAGACGACGCTATCTGTTTGGTGTTTCTGAAACTTCAGAGAAATTAAACAGT-
GCTTCTGGCTTGTAGGAACAAAATATGTTGAAAGTGC---CTATAGTTGATTTTCCCTGGTTATATATCTGTTATGATAT
CATTCTCACCTGGGAGTTGTTGGTTGCTTTCTTCAGCAGCATATTTCTCACTTCCAGATTGAGTATTCTGGTACCTTTTG
AGAGTAGGAAGTCCCATTTAGTAGCGGAAACGTTGCAGGCTGTGTTAGCATTCAGAAAGCTACTCCCTCTGTAAACTAAT
ATA------------AGATCATTTAGGTCACTAAAGTAGTGATCTA-----------------AACGATCTTATATTTGT
TTAAGGAGTACAATATATGCCTACATATGAGTA---TATGACCCAGCAAGAATAAAAAACAAAGCATCTATAGCTCTAGA
ATGAGTGAATCACAATTCTATTTTAGCAGTGCATTCAGCCAAGACTTGTTTTGAACAGGGGCTTAGACTTCACGAAT--T
ATTCCGAAAAAGATACTCAGCACATACAGAAGACTCATGATTGCGTAATGTGTAAACATTTCAGCAGAGCAAAAAGTTTC
CGAAGGACAGATACACTGCAGAAACGGCTAGTCTAGCAAC-------CACTTTGCAATCTAATAATTATACTAAAGATAA
TTCTTGACGCTTTGTTAAAGAAAACCAAAGAAAAATACTTATTGCTACATTAGGGCATC-CCAACGATGACCCGCAAATT
TGCTCTGGCATCCGTCCACAGACAGGGGGGATCACTCCACGGACACTGATGCCGGAGGCGGCCCATCCAACGCTTCCCAC
ATACATCCGACCCC-
>chr4D_127
--------------------------------------------------------------------------------
--------------------------------------------------------TCTTTTTTTTAGAATA--ACAAGA
GGTTCGAGGGTCGACCTCAGTGAGAAACTTCCAA----------------------CTCCTAGAGTACACCGCGGTCTAC
GG-ATCAGGTAGCCTGGGCTTTTGACCCAGCAAAAAGGGCTGGGTTTGGCCTACAACGCAATTAAACCCACCCGGTCGCT
GGATTCCACCAAATTCCCAAGTCCAAACCAGTCCGGTGTCTGTCACTCTCGCCCTAGACCGCAGGCCCACCGCTGTCGCC
ACACCCACACCACACCTGCAACGTTTTCGTCTTCTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACGTTTTC
GTTGGACGCACCGCCGCGCTGTTCAAGCGACGTACACTACTGCTACTCCGGTCGCCGTCCCTCCGCCCCAATCAGGCAAC
CACCCTCCTCAACAACTACCCACCCCACC----------ACCAC-CCCTCGCCCTCCTCCTCCGTCCTC--CGCGGCGCC
TCAGCCACCCGCGGGCCGTCGATCCCTCCCCTCGCCGAGTCCCACGGCGGCGGCCCGGCGGCGTGGAGCACCTGACCTGC
CGGA-------GACCGGAGCCATGGTCAGGACGGCGGCCGGGGGAACAGGAGAGTATC------ATCGTCGCCGGCGAGG
AGCACCCACGAAGAGGCGGCGGCCCGGGTCGTCGACGGGGTCAACTC----CTTCCTCGGCAAGGCAGGCGGGGACCACG
TGGCGCGCGCGGCACGGCCAGCTGGCGGGCCCCACGCGTCAGCGGGCGGAACCTCCCTGCGCCTGCGCGTTGGATTCGCC
G-----CCCCTCCGCGTGCGGTGCGGGGAGCTTATTTAAACGCCCTCCGCCTTGGCTTGGCGCTACAGTGGACGATAACC
GCCCGCGGCAACAAACATTCCTCCTCCCTCTTTGCCTCTCCCCTCTCCCCCT-----------CGCCCGCTCGCCGCTCC
CCGCGCATGATCCACCTCCTCCTCTAGCCATGTCGCC---------GCCGCCGTCGTCTTCCGAGGAGGAGGCGTCCCGC
GGCAAGTCCGGTTCGGCGAGCGCGATGGCCCCCGGCAAGTCGAGCTCGGCGAGCGCGGCGGCCCGCGGCAAGTCCGGTTC
GGCGGGTGCGAGGGTCCCCGGCAAGTCCGGTACGGCGGGTGCGGTGGCCTCCGGCAAGTCGGTCTGGGCCGAGATGGGCG
TGGCGCCCTTCCAGGACGGCCAGTACGTGCGGCTCCGCAACCGCGGCCGCGGCGGTTACCTCTGCGCCGACGAGACGGGG
CGGGGCGTCTCCATCGACCCCCGCCGCGGGATGGTCAACACGGCGTGGGTCGCGCAGGTCCTGGAGACCGACACCAACTA
CTTCGTCCTGCTCCGCGGAGCCTACGGCCGCCACCTCGCCGTCACGCGCGCCGAGGCGGGGCCCGGCCACGTCGGCTTCG
ACGCCGCCCAGTGCGCCTTCGACGAGCCGGAGGACTCCCACGTCATGTGGTGGACCACCCCGGGGAAGAACGGCAGCGTC
GTGCTCCTCCATGGCACGTCGGCCAGGCTCAGCGCGCTCCGGGCCAACGGTCGGTACCGCCGGTGGCACAGGCGCGTCAC
CGTCGAGGCCATCAACCGCTCCCGCGTCACCTCGATGATGGAGTGGGAGGCTCAGGTCATCCCCATGAGGGTGGAGAGGC
CACCGTACCAACTGCGACCAGGAGGCCCCGATATTGTAAGATCTT---CACCCGCACCCTTCTCCCTTGCACAATTCTGG
GTGGTCCTGAATAAATTGGAGTGCTTAAGCCTTAGGCTATCGATGATTTCTGACAATGCTGCAACAAGTGCTGTTAAGCT
GTCTACGCCGCTGCTATTGCGAAATTTGGGGATTGTTTGCTCAAATAGAACAATGCATGTGGATGTGTGGCCAATTCTTG
CTTCAATAGCCCAGTAATTATTGCTGATTACTGCAGCACAGGTCTTGCACCATAAGCTTTCAAGTCGTGTTGCGTATTAG
GTACTTTAGAGGACGATCCCTGCTGAATTATTAGTCTGATGATAATT---------------------------------
-------GTGAAATATCGGATTATTTTCATTTCCCTGTAAATGCTTCAATCTGGATAATTGGTGCTGAAGTAGTTCCCTT
CATGATTCAGGTGTTAATATTC-----TGGTTCATTAGAGGACTGATCATGTTGTGTCATCTCATCTATGCCTTGATTTG
TGTCGCCTAAGCACTTTTCTGCAATTTCCATGAGCAGCCATGGCACCAAGGCTCTGAAGAGACTGTGCAAGTCAATTGCG
TCGTGGCAGATGATAACGGGAGCACGGATGGGCAGGGCAGGGAAGCTCTCACGCTCCATGGCAGGAGTCTGATGGGGCTG
GGCGATGAACTGGCACAGCGGCTGGGCGACGGCCTCAACTTCCAGGACATCACCCTCTGCATTCAGGCAGGCAACCTTGC
GCAGCCCACGGTTCTGCTCACCGACCTGCCCCATAGAGACGACCCCGTTGACATCGTGGTGTTCAGAGTTGGCACACCAG
GTGAGAACTGCACTCCCATTTTAGTAGTACTCTGCACGTCTGCTCTGCTGTTGGAAGATGGAACTATGCATTTTCTCTTC
AGATACAAACGCCACACTA----------------CAAGTCCATGTAACTGAAGAAATTAGGTAGAAACTTGTAAATTAG
GATCAACAATCCAATTGTTCATCTGATATCTTGAGTCTGGTGTATAGGTAGCATCTGATATTTCAAACGCTTGATGCGAA
AATACATGGGATTTATAATGTGTTTGCATAATGTTGTGCACT--------------------------AATTTCTGTATT
AACGTTTTTTAGGGAATTCCTGTATTAACTTGATGCTAGATAAGTACTCTCTTAAACTATTTGATAAGTTAATTACGCTA
GTTTAGAGGGTTGATCACCCGCATTTGTTTTTGAATTTAGTTGGTTTATTGTCGGCCCTTGGTCCTCAATGTAGAATGAA
TCTACCCGAAACCAATGTTAAGTATTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GTTTTCCCATGTTCAATCATCCCGTCTGATACTTTGATATGTGTTGTG
TTCGGTCCAAAGCATGTGCTCTCAGTGACAGCAAATATTCAGTTTAGCTGCTGCCTACTGGACTTGTAGTAGTTTAACGT
GTGCTGGTAGTCAAAGGTATCTCTAGCTAGCCAGTGCACATAAACAGACGTAAATAAAATGCTGAGTAGCTTATACTTTA
TGCTGATACAAGCAATCGACGGGCTGAGAACACTCACGTATGAAATGACACCCAGTTTTGTTCCTGTACCCCGAGAAAAT
ATGAACTTGCATAATCCTAGTGTATTATGTTATCAATGTAAAATCTGCTGTTCCTTTCATTCATACTATATGCTGATGTT
CTACTTAGACAATCTTAAATGCCAAGCTGTTTCTGAAATAGACTTCTACTTGTGTTATCTTCACACATGTCCCATTCTAC
AAG-GACCATTGTGTTGTACGTATGATATTGGGTTTTGAGGAAAACAGTGTTATATGATAATGTATCAGTGTTCTTCTTT
GCACCACCTCCCGAGCATATGACTTGGGTTATCTTGCTTACTGTTTCTGACCTCTGACCTCTGTCACTCGGCTCCAGGGC
ATGACCGACTGCTGTTTCCAGATCTTGATGCTGAATAGAAGAGACGGGTAGGATCAGACAAGAATGAATTCTTCCCCTGG
ACAGTACTGTCAACGCCTCCACAATTTTACAGCAGAGTGATGGCCTGACAAGGATTAGCAGTTTACCTTCTTATCACTGA
ACAGTTCATACAATACAGTGTGTAGGGTCTCCTCTAGAATAGTCACCCAGTTCCGGAAAAGTGCAGGTTATGCGCGCTTC
TTTGCCACTTCACATTTGGAACACTAGGAGCCGACGCTATTTGTTTGGTGTTTCTGAAACTTCAGAGAAATTAAACAGT-
GCTTCTGGCTTGTAGGAACAAAATACGTTGAAAGTGC---CTATAGTTGATTTTTCCTGGTTATATATCTGTTATGATAT
CATTCTCACCTGGGAGTTGTTGGTTGCTTTCTTCATCAGCATCTTTCTCACTTCCAGATTGAGTATTCTGGTACCTTTTG
AGAGTAGGAAATCCCATTTAGTAGCGGAAACGTTGCAGGCTGTGTTAGCATTCAGAAAGCTACTCCCTCTGTAAACTAAT
ATACTCCATTTAGTAAGATCGTTTAGATCACTAAAGTAGTGATCTAGTAAACGTTAGTGATCTAACGATCTTATATTAGT
TTAGGGAGTACAATAA-------------------------------------AAAAAACAAAGCATCTATAGCTCTAGA
AGGAGTGAATCACAATTCTATTTTAGCAGTGCATTCAGCCAAGACTTATTTTGAACAGGGACTTAGACTTCACGAAT--T
ATTCCGAAAAATATAATCAGCACATACAGAAGACGCATGATTGCATAATGTGTAAACATTTCAGCAGAGCAAAAAGTTTC
TGAAGG------ACACTGCAGAAACGGCTAGTCTAGCAAGTAGCAATCACTTTGCAATATAATTAT---ACTAAAGATAA
TTCTTGACACTTTGCTAAAGAAAACCAAAG-AAAATACTTATTGCTACATTAGGGCATCTCCAACGTTGACCCGCAAATT
TGCTCCGGCATCCGTCCGTGGACAGGGGGGGCCAGTCCACGGACACTGATGCCAAAGGCGT-CCATCCAACGCTGTCCGC
ATACATCCGACCCC-
>SNPs
--S------S----S---------S-S----------------S----------S-S--SSSSS-S-SSSSSS-------
----------------------SSSSSSSSSSS-S-S--S----SS------SSS---------S------S--------
--------------------------S--------------------------------S---------S----------
--------------S-----------------------------------------------------------------
----------------------------S---------------------------------------------------
-----S--SS----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------------------S----S---------------SS-S-S---SS---------
--------------------------------------------------------------S------S----------
----SSSSSSS-------------------S------------------------------------S---------S-S
S--S-------S---------------------------------SSSSSS-------------S---------S-----
--------------------------------------------------------------------------------
-SSSSS---------------------------------------S--------------S-------------------
--------------------------------------------------------------------------------
---------------SS------------------------------S--S-----------------------S-S---
-----------S---SS-------SS------S------SS-S-S-----------------------------------
-------------------------S--S-SS-------------S----------------------------------
-------------------------------S------------------------------------------------
-------------------S-----------------------------S--S-SS------------------------
------------------------------S-------------------S-------------------S---------
-----------------------------------S----------------------------------S---------
-----------S-------------------------------------------S------S-----------------
-------------------SS-----------------------------------------------------------
-------------------------S------------------------------------S-----------------
------------------------------S---------------------------SS--------------------
--S--------------S-------------------------------------S------------------------
--------------------------------S-----------------------------------------------
---------------------------------------------------------S-------------S--------
--S------S-----S----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------SS-S-----------------------------------------------------------------S
------------------S-------------------------------------------------------------
----------------------------------S----------------------------------S----------
--------------S------S----------S---------SSSSSSSSSSSSSSSSSSSSSSSSSS------------
--------------------------------------S-------------------S---------------------
S-----------------S----------------------------------S--------------S-------SS--
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------S------S----------------
-----S--------------------------------------------------------------------------
---------------------------S------S---------------------------------------------
--------------------------------------------------------------------------------
----------------------------S----------------S-------------------------------S--
--------------------------------S---------------------------------S-------------
-------------S-------S-----S----------------------------S--------------S--------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-------------------------------SSS
---S---------------------------------SSS----------------------------------------
-------------------------------------------S--------------------------S-------S-
------------------------S----------------------------------------------SSSS-----
---------------------------------------------------------------------S----------
----S---------------S------SSS-SSSSS---------S----------------------------------
------S----------------------------------------------------------------------SS-
-----------S----S----------------------S------SSSSSSS-SS-S----------------------
----------------------------S----------SS---------------------------------------
----------S--------------------------S--------------S------------S--------------
--S-----------------------S-------------S---------S-S------S----S------S--------
--------------S
>forward_1105
--------------------------------------------------------------------------------
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---------------------------------------------CAACTTCTTCCTCGGCAAGC---------------
--------------------------------------------------------------------------------
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>reverse_2143
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--------------------------------------------------------------CCCCTTGCACAATTCTGG
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>forward_1411
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--------------------------------------------------------------------------------
-------------------------------ACTCCCTCTAGCCATGTCGT-----------------------------
--------------------------------------------------------------------------------
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---------------
>reverse_3414
--------------------------------------------------------------------------------
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-----------------------------------------------------AGCCCTTGGTCCTCACTGTA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>forward_2974
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------CACCAG
GTGAGAACTGTGCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------
>reverse_4217
--------------------------------------------------------------------------------
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--------------------------------------------------------GCCTCTATCACTCGGTTCCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------
>forward_3875
--------------------------------------------------------------------------------
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---------------TCGACGGGCTGAAAACACTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_5352
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------ACTGCCCAC
ATACATCCGAC----
