>input_sequence_29723
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-----------------------------------------------------------------------ATGCTGCCG
TACGCGACGGCCGGCGAGGCGGAGGCGGCGCTCGGCCGCGCCCTGACGTGGGCGGAGGCCGCGTGGCTCCGCTACTCGGC
GTCGGTGCCGGACCGCTACCTTCACTGGCCCAACATCGCCATCACATTGGTCGTCTACACGCTGGCGCCGCTGCCCCTCG
CCCTCTTCGACCTCGCCGCGCCGGCCGCCGCCGCACCGTACAAGCTGCAGCCCAAGGTGCAGCACCCGCCGGCCACCTTC
TTCCGCTGCTACATGGACGCCGTTCGGGTCTCGCTGCTCATCATCGGACCATACCAACTCATCTCGTATCCTGCCGCCAA
GGTCTACTACACCTCTTGCATTGTGACTTACTGGTTATAATTAGGAAATTAGGTTTTTTGTTCATGAAAAAAAAACA-TA
AAAATGAAACTGGAGTAATGACTTAGATCTCGCCTACTATTACCGAGTTAGAAGATGGAAATTGCATGTGAACGTTGGAA
TCTTTGAGTAGACACTTAATTTTCAATCGAAACTTCTGGACCTGAATTTAGATTG-AAAAACAAATCACTAGATAAATAC
TGTGCACTAGCCTGTTATT---AATTAGTAAAGATTCATGCTCTATATGGCGTTGATGTAGATTATTATAATCTCGTGTG
ACTGACCAATTTTTGTATGTTCTACTGTTTGCTAACAATTTTTTCCCTATTTCTGTCGCTATTTGTACGCAGAAGAGTGT
AAAATAAGTCCAGTACAGCACAGTTCAGCAACTGCAAGCTGAGCCTCGTTGGATAAAGGTTCAGAGACGTAACTTAGGTC
TTTTATCTGGATGAGTATTAGCTACCTAAAATTGATAGATATATAAAACATACATGGACATGGTGCATAGAAATTTGAAC
TGATGTAGATGTAACTATTTAGAAATCCAATGACTGAAAAACACTAAGAGTAAGAACATGAGAAGAATCATTCGCAAAAA
AAA---AACATGCGAAGTAACTAGGAAAGCAC------------------------------------------------
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--------------CTATATATGCCATAAGAAATTTAAGTGCCTAGAGAACAAACTTCCAAGAAA---ACAAC---TCAG
TTTCTATATTGTGTGTTTGTTAGATAATGGACATACGGACGGGACTTCCATTGCCGTCAATGGGGGAGATAGCGGCACAA
CTGACGGTATACTTCTTGGTGGAAGACTATCTGAACTACTGGCTCCATCGGCTGTTGCACACAAAATGGGGCTACGAAAA
GATCCACCATGTTCACCATGAGTTCACGGCACCTATGGCGTATGCCGCATGGTATGGACACTGGGCTGAGATGCTCATCC
TTGCCGTGCCCTCCTTGGCTGGCCCTGCTCTCGTCCCATGCCATGTTACCACGCTGTGGATTTGGTTTGCTGCACGTTTG
GTTGAGAGCCTCAACATACATAGCGGGTAACATCACTT-CACTCCATCTAACGGGCTTTTTTTC---TTCTTGAATTCAG
ATATCTGACTTGTTTCATTTCTAAACATATTGAGACCAATCAAATTAACTATAAACATGTTCTTTTGTGACCGGAGAAAA
AACAAGCTTTGTAACATGTGTCTTGTAT-AATAATTCTTTGACTACAGATTTAAGTTGCCATTCAACGCTGAGAAGTATA
TACCGTTCTATGGAGGGGCGGAGCACCATGACTACCATCACTACATAGGAGGACAGAGCAAGAGCAACTTCGCTCCTGTT
TTCACCTACTGTGATTATATTTATGGAACGGACAAGGTATCTAGAGTTCTACTATCTTACACTTGAATGATTTAAAACCA
TATGAATTAAGAACTGATGGCAGGTCACTAAGTCATCTTTCGATCTTTTTTT-AGGGCTACAGATATCACAAGGCAACTC
TGGCAAAGGTAAGCTTCTACCAATCTTTTTTTT------------AAGAAGCGTCTTTTCAACAATCAACATTATCTATG
CTTAAGCATAATAATATTTCACGCCAACTGTTACAATAATAGTGTGATATGCTGGCTCTTTTTCCTTGAAAACTTGTCCA
CTTCCTAGGGCAACTTGTCCACTTCCTAGGGCGTGGCATCTT-GGTTCTCTGCTAAAGAACATTATTTGACTCCCACCAA
CCATAGGTTGGATAGA-TTGATTTTGGATTTCCACTATGATTATTATTTTCCTGTACTTGTGAACAATTCCTGATATTTT
TTCCTTAAGAAATAAGTTTAAAATTATTCATGTTGGTGGGATGGACTCCCTCCCTTCACAAATATAAGATGGTCTAATTT
TTTGTGAATCGGATGTATATAAATACATTTTAGTGTGTGTGTTCATTCATTTTAGTCCATATGTAGTCCATATTGAGATT
TCCAAACCATCTCATATTTGTAAATGGAGGGAGTATATAATACATACACGCACCCATACCCTTAATTATCAGTTAGCTAT
AGGGAAAGTTTATAAGTTTATATTGTCAATTCTTATTCTCTTAAACT-GTAATATGACTCAATACATAGGGAAACAAAAA
TGAAGGTATTTATTTTACAGACTACCTGCATCCTAGGATTTGTTGAGGAGGCAAACATCTGGTATTATCTTAACTTTGTT
TGTTTTTGTATCATTGCATCGAACAGCTGAAGGAGTTGGCAGGCAGCGACGTTCAGAAAGGAGTCGACAATGGATTCAAC
AATGGAAAGCAGGACTAG--------------------------------------------------------------
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------
>chr4A_1_TraesCS4A01G218400
AAAATGGCATGGCAAAAAAAAAATCCAAAATGATGACAGCTTTT-TTTATTAATACCTAAAATGACTCAATCAAATTTTT
GTGAGGGGTCTCAG----TCTTTT--CTTTTTTTGAGAAAGTGAGGGGTCTCAGTCAATTGTTTTGGGGGAAGATAGTTC
----------------------------TAAGCAAAGGTGTAGCCAGGCCCCAGACTAGCCGGGCCACGGGCCGAGACGT
GACGCCGGATTCCTTCTTCATTGGTATAGCATCTTCGATACTGTAGCACATAT--TCGGCCTGGGGCTTGCCTAGGGCCT
GGCCCGGTCCTGGCTAAGCCAGTGGTCCGGTCTGGAG-------------------------------------------
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------------------AAAAGTATTCCTTCTTTTTGATCAATATATATAAAGTTGGACAGCCTAAAAAATACAAAAAT
ATATGTATAAAGTTGGCCTTTACCCCTAAAAAATACAAAATTGG-TGGTGTGAACCAATTAGACTTTAGACTCTTTT---
TTAAGGC--------ATCCACGGTGCTAGAAAAAGACGATCTTTTGTCACGTCTTGTTGCACCTGTTTTATTTAGTGAAC
ATGCATGTGATCGAAGATGGGACGTGGAGGA-AAAAAATGGTGCTAGCTTAGACGTGAGAGGAATCATCCACAACAGAAA
AATCATATCGTGGTCCTTATCATTATATCTAACAAACAAGAGTAATGTTTATCTCATCTTAGTAGTGCTACTTTTTCGCT
GGGCTCATCAACGGCAATGGGTGACTCAGGAATCTGGAGTCACGCAATTGCATTTGCCCTAGCTAACTAACATCCACTAT
AAATAAGGCAACATGCAAGCCCTCCGATTGCTCACTCCGTCACGTCCCGCGGGTCAGAGCGCATCTACACGTACGCCCGG
CCTCCTCTTCAAGTGACGCGAGTATAACTAGCCACCCATAGCGTGGACGCGGAAACTTTCCAAGGTGCGCAACGGCCTCT
GCCCCGATCCCGGAGCAGAGCAACAGATAGAACCCTTCCTTCCTCTCCCGAGATCGATCGACGCCGGTAAGATGCTGCCG
TACGCGACGGCCGGCGAGGCGGAGGCGGCGCTCGGCCGCGCCCTGACGTGGGCGGAGGCCGCGTGGCTCCGCTACTCGGC
GTCGGTGCCGGACCGCTACCTTCACTGGCCCAACATCGCCATCACATTGGTCGTCTACACGCTGGCGCCGCTGCCCCTCG
CCCTCTTCGACCTCGCCGCGCCGGCCGCCGCCGCACCGTACAAGCTGCAGCCCAAGGTGCAGCACCCGCCGGCCACCTTC
TTCCGCTGCTACATGGACGCCGTTCGGGTCTCGCTGCTCATCATCGGACCATACCAACTCATCTCGTATCCTGCCGCCAA
GGTCTACTACACCTCTTGCATTGTGACTTACTGGTTATAATTAGGAAATTAGGTTTTTTGTTCATGAAAAAAAAACA-TA
AAAATGAAACTGGAGTAATGACTTAGATCTCGCCTACTATTACCGAGTTAGAAGATGGAAATTGCATGTGAACGTTGGAA
TCTTTGAGTAGACACTTAATTTTCAATCGAAACTTCTGGACCTGAATTTAGATTG-AAAAACAAATCACTAGATAAATAC
TGTGCACTAGCCTGTTATT---AATTAGTAAAGATTCATGCTCTATATGGCGTTGATGTAGATTATTATAATCTCGTGTG
ACTGACCAATTTTTGTATGTTCTACTGTTTGCTAACAATTTTTTCCCTATTTCTGTCGCTATTTGTACGCAGAAGAGTGT
AAAATAAGTCCAGTACAGCACAGTTCAGCAACTGCAAGCTGAGCCTCGTTGGATAAAGGTTCAGAGACGTAACTTAGGTC
TTTTATCTGGATGAGTATTAGCTACCTAAAATTGATAGATATATAAAACATACATGGACATGGTGCATAGAAATTTGAAC
TGATGTAGATGTAACTATTTAGAAATCCAATGACTGAAAAACACTAAGAGTAAGAACATGAGAAGAATCATTCGCAAAAA
AAA---AACATGCGAAGTAACTAGGAAAGCAC------------------------------------------------
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--------------CTATATATGCCATAAGAAATTTAAGTGCCTAGAGAACAAACTTCCAAGAAA---ACAAC---TCAG
TTTCTATATTGTGTGTTTGTTAGATAATGGACATACGGACGGGACTTCCATTGCCGTCAATGGGGGAGATAGCGGCACAA
CTGACGGTATACTTCTTGGTGGAAGACTATCTGAACTACTGGCTCCATCGGCTGTTGCACACAAAATGGGGCTACGAAAA
GATCCACCATGTTCACCATGAGTTCACGGCACCTATGGCGTATGCCGCATGGTATGGACACTGGGCTGAGATGCTCATCC
TTGCCGTGCCCTCCTTGGCTGGCCCTGCTCTCGTCCCATGCCATGTTACCACGCTGTGGATTTGGTTTGCTGCACGTTTG
GTTGAGAGCCTCAACATACATAGCGGGTAACATCACTT-CACTCCATCTAACGGGCTTTTTTTC---TTCTTGAATTCAG
ATATCTGACTTGTTTCATTTCTAAACATATTGAGACCAATCAAATTAACTATAAACATGTTCTTTTGTGACCGGAGAAAA
AACAAGCTTTGTAACATGTGTCTTGTAT-AATAATTCTTTGACTACAGATTTAAGTTGCCATTCAACGCTGAGAAGTATA
TACCGTTCTATGGAGGGGCGGAGCACCATGACTACCATCACTACATAGGAGGACAGAGCAAGAGCAACTTCGCTCCTGTT
TTCACCTACTGTGATTATATTTATGGAACGGACAAGGTATCTAGAGTTCTACTATCTTACACTTGAATGATTTAAAACCA
TATGAATTAAGAACTGATGGCAGGTCACTAAGTCATCTTTCGATCTTTTTTT-AGGGCTACAGATATCACAAGGCAACTC
TGGCAAAGGTAAGCTTCTACCAATCTTTTTTTT------------AAGAAGCGTCTTTTCAACAATCAACATTATCTATG
CTTAAGCATAATAATATTTCACGCCAACTGTTACAATAATAGTGTGATATGCTGGCTCTTTTTCCTTGAAAACTTGTCCA
CTTCCTAGGGCAACTTGTCCACTTCCTAGGGCGTGGCATCTT-GGTTCTCTGCTAAAGAACATTATTTGACTCCCACCAA
CCATAGGTTGGATAGA-TTGATTTTGGATTTCCACTATGATTATTATTTTCCTGTACTTGTGAACAATTCCTGATATTTT
TTCCTTAAGAAATAAGTTTAAAATTATTCATGTTGGTGGGATGGACTCCCTCCCTTCACAAATATAAGATGGTCTAATTT
TTTGTGAATCGGATGTATATAAATACATTTTAGTGTGTGTGTTCATTCATTTTAGTCCATATGTAGTCCATATTGAGATT
TCCAAACCATCTCATATTTGTAAATGGAGGGAGTATATAATACATACACGCACCCATACCCTTAATTATCAGTTAGCTAT
AGGGAAAGTTTATAAGTTTATATTGTCAATTCTTATTCTCTTAAACT-GTAATATGACTCAATACATAGGGAAACAAAAA
TGAAGGTATTTATTTTACAGACTACCTGCATCCTAGGATTTGTTGAGGAGGCAAACATCTGGTATTATCTTAACTTTGTT
TGTTTTTGTATCATTGCATCGAACAGCTGAAGGAGTTGGCAGGCAGCGACGTTCAGAAAGGAGTCGACAATGGATTCAAC
AATGGAAAGCAGGACTAGAGAGAGGTTGGCTTCAGAGGACTCATGGTCATACAAATCCTATCACTAATTCAAGTGGTCTC
CGGATATATATCCCCATGATGGAGTACACTAGCATAAATAATTGTTCTATGCCAATCATCAACGTTGAGTGGCTCGTGAA
CCACCGGCAGAGTCGTTCCAAGTGTTAATTATTTCCAGTT----CTCCATTCGTACACATAGCTCCACTACTTCTCTATT
ATCGAATGTAATAATGATGCTTAGTTCGTGATATGCTTGAAAGTGTGCTTCTTTGCATACTACGTGACATGTCTCTAGCA
AGCAGGCATGTGGGAACCGTCAAATATGGAGACAATAGTCGAGAGCATTTGCGTTTGTACTTCCAATATCAGATGTTGTA
CATAATTGGACAATCTATCTTTTTCCCTATATTTACGATATATGTTGTCTTTCGGTGATCAGTATTTTTTTGTGAGGTTT
TCTTTTGGGGG-AATTTTCGATGAGCAATATGAGTATGAGACTACAAAATTCTAGAGGATCACCTTGGCAATCTTGTTAG
TTAGAATTGATGTGTTTGGTTTTAGCCTAACTTCTACGACAAAATAGTTGACTAGCCAAAATTTTGATGGAACTTTTGCT
TGCCTTTGAATTGGTCAACAACGGCTAGAAAA--AAAATAGAATGGGTACAAAAACATTGG----------------TAG
CTATCCAAACATAGACCAA-TTTTTTTTTTTGTCATGACCAGAAAGTTGATAGGGC--GTGAGTGTTGGCCACCATCCAA
ACATACCCAAACTGTGCAGGTAAGTATTATTCCTCGATCGCCCGAGAAATCTCCAGAAAGCATTCATGCAAGGATGTTTT
TCAGCTTCTTCGTTCTATGGGCTCTTATCTATCGTGCCGCTTGTGCTTTCTCTATAAAGTGGGGTGATATGCCCATTTCG
TATATATCACGTCACTTTTGCAGTGTTTTACACCTGACAGAGAT--CAAATCACTACAAGGTCCACGATGGCGACTGCAA
ACTATG
>chr4B_16
AAAAAAAA----------------CCAAACTGATGACAGTTTTT--TTATTAATACCTAAAATGACTCAATCAAATTTTT
GTGAGGGGACTCAGTCCTTCTTTC--TTTTTTCTGAGAAAGTGAGGGGTCTCAATCAATTGTTTTGGGGGAAGATAGTGT
CCTTTTTTTTAGGGAAGGGAAGATAGTTTAAGCAAACGTGTAGCCAGGCCCCAGACTAGCCGGGCCACGGGCCGAGACGT
GACGCCGGATTC---CTTCATTGGTATAGCATCTTCGATACTGTAGCACATATATCCGGTCTGGGGCTTGCCTAGGGCCT
GGCCCGGTCCTG-------------TCCGGTCTCAGGATTAGAATCCTCCTCGAACTGAATAGAAAAGTCCG-CTCAAAA
GAAAAACTGAATAGAAAAGTATTCTTTGGTGTTAAAAAAAGTATTCTTTCTCCCTAAAAAAAGTAGGAAAACACTATCCT
TCAGTCGATGGATGCACGTGCAGCGTCCGCCTCCTGCGTAGCCCTCAGATCAATCTTGATCGAGCGCTCACGCTGGCCAC
AAATCCTGTGCAGCCAATTTTTTTGCAACAACTGTATTGTTTCAGAAGATTTCTGCAACAGAGATCTTGTTTCAGAAAAA
AAATGATTCGGTGCTGACCTTTTTTTTCGCAACAGGGTCTAGTTTTGGAAAGTTTCTGCAACAGAGGTCTTGTTTCAGAA
AAAAAAATGGTTCGACAGTGAAGATATTTTCTTCTGCATGCAACAGGGGTCTTGCTTCAGAAACATAGCCCCAGTTGCAG
AAAGCGTTGGAGGTGCGCACGATATTAGAGTGTACGAAGCCAGGCATTGCAACAAGACGCATGTTTTGGAAACATAGCTT
CAGTTATAGAAATCGTCAAAGAAGTGCCCGACATGGGAGCTCGTCGCCGTCATGTTGGAGTAGAGGCCGCGCCTATTCTC
CAAGCAGGGCCCCTCGGTGAGCTCGATTTGCGTCCGATCCAAGCATCTGACGCGCGATATGGTGTGCCATGGTGCTGCAG
GGAGTTCAATTTAGCTTCTGCATGTCGGCGGCGGGCCAATTTGGGGGTTGACGGCGGTGGTGCGTTGGGTGCAGCTCTGT
CGAGGCCGGGGTAAGTTTGTTGTCTTGTTTCTGCAACAACGCGCATATTGCGGGAATAATGTGGGGGCATGCGGGACGCG
CACACTAGATCGGACGGCTAACAGCTTAGGGATCCGACGGCTGTCCAGACGGCGGATAATTTCAATACATCTGTCGGCGG
ACGCATAGCACCGCCCCAAAAAGTATTCATTCTTT---------------------------------------------
----------------------------------ACAAAATTGG-TGGTGTGAACCAATTAGACTTTAGACTCTTTTTTA
TTAAGGC--------ATCCGCGGTGCTAGAAAAAGACGATCTTTTGTCACGTCTCGTTGCACCTGTTTTATTTAGTGAAC
ATG----TGATCGAAGATGGGACATGGAGAGGAAAAAAATGTGCTAGCTTAGACGTGAGAGAAATCATCCACAACAGAAA
AATCATCTCATGGTCCTTATCATTATC--TAACAAAGACGAGTAATGTTTATCTAATCTTAGTAGTGCTACTTTTTCGTT
GGGCTCATCAACGGCAATGGGTGACTCAGGAACCTGGAGTCACGCAATTGCATTTGCCCTAGCTAACTAACATCCACTAT
AAATAAGCCAACATGCAGGCCCTCCGATTGCTCACTCCGTCACGTCCCCCGGGTCAGAGCGCATCTACACGTACGCCCGG
CCTCCTCTTCAACTGAGGCGAGTATAACTAGCCACCCATAGCGTGGACGCGGAAACTTTCCAAGGCGCGCAACGGCCTCT
GCCCCGATCCCGGAGCAGAGCAACAGATAGAACCCTTCCTCCCTCTCGCGAGATCGACCGACGCCGGTAAGATGCTGCCG
TACGCGACGGCCGGCGAGGCGGAGGCGGCGCTCGGCCGCGCCCTGACGTGGGCGGAGGCCGCGTGGCTCCGCTACTCGGC
GTCGGTGCCGGACCGCTACCTCCACTGGCCCAACATCGCCATCACATTGGTCGTCTACACGCTGGCGCCGCTGCCCCTCG
CCCTCTTCGACCTCGCCGCGCCGGCCGCCGCCGCACCGTACAAGCTGCAGCCCAAGGTGCAGCACCCGCCGTCCACCTTC
TTCCGCTGCTACATGGACGCCGTTCGTGTCTCCCTCCTCATCATCGGACCATATCAGCTCATCTCGTATCCTGCCGCCAA
GGTCTACTACACCTCTTGCATTGTGACTTACTGGTTATGATTAGGAAATTAGGTTTTTTGTTCATGAAAAAAAAAACGTA
AAAATGAAACTGCAGTAATGACTTAGATCTCGCCTACTATTACTGAGTTAGAAGATGGAAATTGCATGCGAACGTTGGAA
TCTT-GAGTAGACACTTAATTTTCAATTGAATCTTCTGGACCTGAATTTAGATTG-AAAAACAAATCACTAGATAAATAC
TGTGCACTAGTCTG---TT---AATTAGTAAAGATTCATGCTCTATATGGCGTTGATGTGGATTATTATAATCTCGTGTG
ACTGACCAATTTTTG-ATGTTCTACTGTTTGCTAACAATTTTTTCCCTATTTCTGTCGCTATTTGTACGCAGAAGAGTGT
AAAATAAGTCCAGTACAGCACAGTTCAGCAACTGCAAGCTGAGCCTCGTTGGATAAAGGTTCAGAGATGTAATTTAGGTC
TTTTATCTGGACAAGTACTAGCTACCTAAAGTTGATAGATATATAAAACATACATGGACATGGTGCATAGAAATTTCAAC
TGATGTAGATGTAACTAGTTAGAAATCCAATGACAGAAAAACACTAAGAGTAAGAACATGAGAAGAATCATTCGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCTATATATGCTATAAGAAATTTAAGTGCCTAGAGAACAAACTTCCAAGAAA---ACAACAACTCAG
TTTCTATATTTTGTGTTTGTTAGATAATGGACATACGGACGGGACTTCCATTGCCGTCAATGGGGGAGATAGCGGCGCAA
CTGACGGTATACTTCTTGGTGGAAGACTATCTGAACTATTGGCTCCATCGGCTCTTGCACACTAAATGGGGCTATGAAAA
GATCCACCATGTTCACCATGAGTTCACGGCTCCCATGGCATATGCTGCATGGTACGGACACTGGGCTGAGATGCTCATCC
TTGCGGTGCCCTCCTTGGCTGGCCCTGCTCTTGTCCCATGCCATGTTACCACGTTGTGGATCTGGTTTGCTGCACGCTTG
GTTGAGAGCCTCAACATACATAGCGGGTAACATCACTTGCACTCCATCTAAAGGGCTTTTTTTCTTCTTCTTGAATTCAG
ATATCTGACTTGTTTCATTTCTAAACATATTGAGACCAATCAAATTAACTATAAACATGTTCTTTTGTGATCGGAG-AAA
ACATAGCTTTGTA--ACATGTCTTATATGAATAATTCTTCGACTACAGATTTAAGTTGCCATTCAACGCTGAGAAGTATA
TACCGTTCTATGGAGGGGCAGAGCACCATGACTACCATCACTATATAGGAGGACAGAGCAAGAGCAACTTCGCTCCTGTT
TTCACCTACTGTGATTATATTTATGGAACGGACAAGGTATGTAGTGTTCTGCTATCTTACTCTTGAATGATTTAAAACCA
TATGAATTAAGAACTCATGGCAGGTCACTAAGTCATCTCTCGATCTTTTTTTCAGGGCTACAGATATCACAAGGCAACTC
TGGCAAAGGTAAGCTCCTACCAATCTTTTTTTTTTCATTTTTTTGAAGAAGCGTCTTTTCAACAATCAACATTATCTATG
CTTAAGCATAATAATATTTCACGCCAACTGTTACAATAATAGTGTGATATGTTGGCTCTTTTTCCTTGTA----------
-----------AACTTGTCCACTTCCTAGGGCGTGGCATCTTTGGTTCTCTGCT-----ACATTATTTGGCTCCCACCAA
CCATAGGTTGGATAGA-TGG-TTTTGGATTTCCACTATGATTATTATTTTCCTGCACTAGTGAACAATTCCTCATATTTT
TTCCTTAAGAAATAAGTTTAAAAATATTTGTGTTGCTGGGAAGGACTCCCTCTGTTTACAAATATAATATGGTCTATTTT
TTTGTGAATTGAATGTATATAAATATGTTTTAGTGTGTGTGTTCATTCATTTCAGTCCATATGTAGTCCATATTGAGATA
TCCAAACCATCTTCTATTTGTAAATGGAGGGAGTATATAATACATACACGCACCCATACCCTTAATTATCAGTTAGCTAT
AGGGAAAGTTTATAAGTTTATATTGTCAGTTCTTATTCTCTTAAATTCGTAATATGACACG-TACAAACGGAAACAAAAA
TGAAGGTATTTATTTTACAGACTACCTGCATCCTAG-ATTTGTCGAGGAGGCAAACATCTG-TATTATCTTAACTTTGTT
CGTTATTGTATCATTGGATCGAACAGCTGAAGGAGTTGGCAGGCAGCGACGTTCAGAAAGGAGTCGACAATGGATTCAAC
GGTGGAAAGCAGGACTAGAGAGAGGTTGGCTTCAGAGGACTCATGGTCATACAAATCCTATCATTAATTCAAGTGGTCTC
CGGATATATATCCCCATGATGGAGTACACTAGTATAAATAATTGTTCTATGCCAATCAACAACGTTGAGTGGCTCGTGAA
CCACCGGCAGAGTCGTTCCAAGTGTTAATTATTTCCAGTTCTCCCTCCATTCGTACACATAGCTCCACTACTTCTCTATT
ATCGGATGTAATAATGATGCTTAGTTCGTGATATGCTTGATAGTGTGCGTCTTTGCATACTACGTGACATGTCTCTAGCA
AGCAGGCATGTGGGAACAGACAAATATGGAGAC-ATAGTCGAGAGCATTTGCCTTTGTACTTCCAATATCAGACGTTGTA
CATAATTGGACAATCTATCTTTTTCCCTATATTTACGATATATGTCGTCTTTCGGTGATCAATA-TTTTTTGTGAGGTTT
TCTTTTGGGGGGAATTTTTTATGAGCAATACCAGTATGAGACTACAAAATTCTACAGGATCACCTTGGCGATCTTGTTAG
TTAGAATTGATGTGTTTGGTTTTAGCCTAACTTCTACAACAAAATAGTTGGCTAACCAAAATTTTGATGAAACTTTTGCT
TGCCTTTGAGTTTGTTAACATCGTCTAGAAAAATAAATTTGAATGGGTACAAAAACATTGGCATGCAAAGACATTGATGG
CCATGCAAACATAGACCAACCTTTTTTTTTTGTCATGAACAAAAAGTTGATAGGGCATATGAGTGTTGGCTACCATCCAA
ACACACCCAAAGTGTTCTCACAAGTATTATTCCTTGATCGCCCGAGAAATCTCCAAAAAGCATTCATGCAAGGATGTTTT
TTAGCTTCTTCGTTCTACGGGCTCCTATCTATCGCGTTGCTTGTGCTTTATCTATAAAGCGAGGTGATAA-CCCATTTCG
TATCTATTGTGTCACTTTTGCAGTGTTTTACACCTGGCAGAGAGAGCAAATCACTACAAGGTTCACGATCGCGACTGCAA
ACTATG
>chr4D_17
----------------AAAAAACCCCAAAATGATGACAGTTTTTCTTTATTAATACCTAAAATGACTCAATGAAATTTTG
GTGAGGGGTCTCAA----TCTTTTTTTTTTTTTTGAGAAAGTGAGGGGTCTCAGTCAATTGTTT-GGGAGAAGATAGTTC
----------------------------TAAGCAAAGGTGCAGCCAGGCCCCAGACTAGCCGGGCCACGGGCCGAGACGT
GACGCCGGATTC---CTTCATTGGTATAGCAC-------------------ATATTCGGTTTGGGGCTTGCCTAGGGCCT
GGCCCGGTCCCGGCTAAGCCAGTGGTCCGGTCTCAGGATTAGAATCCTCCTCCAACTGAATAGAAAAGCGATTCTCAAAA
AAAAAACTGAATAGAAAAGTATTCTTTCTCCCCTAA--------------------------------------------
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-----------------AAAAAGTATTCATTCTTT---------------------------------------------
----------------------------------ACAAAATCGGTTGGTGTGAACCAATTAGACTTTA-ACTCTTTA---
TTAAGGCATAAGGCAATCCGCGGTGCTAGAAAAAGACGATCTTTTGTCACGTCTTGTTGCACCTGTTTTATTTAGTGAAC
ATG----TGATCGAAGATGGGACGTGGAGGA-AAAAAATGGTGGTAGCTTAGACGTGAGAGGAATAATCCACAACAGAAA
AATCATATCATGGTCCTTATCATTACCT-TAACAAACAAGAGTAATGTTTATCTCATCTTAGTAGTGCTACTTTTTCGCT
GGGCTCATCAACGGC-ATGGGTGACTCAGGAACCTGGAGTCACGCAATTGCATTTGCCCTAGCTAACTGACATCCACTAT
AAATAAGGCAACATGCAAGCCCTCCGATTGCTCACTCCGTCACGTCCCGCGGGTCAGAGCGCATCTACACGTACGCCCGG
CCTCCTCTTCAACTGACGCGAGTATAACTAGCCACCCATAGCGTGGACGCGGAAACTTTCCAAGGTGCGCAACGGCCTCT
GCCCCGATCCCGGAGCAGAGCAACAGATAGAACCCTTCCTTCCTCTCGCGAGATCGACCGACGCCGGTAAGATGCTGCCG
TACGCGACGGCCGGCGAGGCGGAGGCGGCGCTCGGCCGCGCCCTGACGTGGGCGGAGGCCGCGTGGCTCCGCTACTCGGC
GTCGGTGCCGGACCGCTACCTCCACTGGCCCAACATCGCCATCACATTGGTCGTCTACACGCTGGCGCCGCTGCCCCTCG
CCCTCTTCGACCTCGCCGCGCCGGCCGCCGCCGCACCGTACAAGCTGCAGCCCAAGGTGCAGCACCCGCCGGCCACCTTC
TTCCGCTGCTACATGGACGCCGTTCGCGTCTCGCTGCTCATCATCGGGCCATACCAGCTCATCTCGTATCCTGCCGCCAA
GGTCTACTACACCTCTTGCATTGTGACTTACTGGTTATAATTAGGAAATTAGGTTTTTTGTTCATGAAAAAAAA-CA-TA
AAAATGAAACTAGATTAATGACTTAGATCTCGCCTACTATTACCGAGTTAGAAGATGGAAATTGCATGTGAACGTTGGAA
TCTTTGAGTAGATACTTAATTTTCAATTGAATCTTCTGGACCTGAATTTAGATTGAAAAAACAAATCACTAGATAAATAC
TGTGCACTAGTCTG---TTATTAATTAGTAAAGATTCATGCTCTATATGGCGTTGATGTAGATTATTATAATCTCGTGCG
ACTGATCAATTTTTGTATGTTCTACTGTTTGCTAACAATTTTTTCCCTATTTCTGTCGCTATTTGTACGCAGAAGAGTGT
AAAATAAGTCCAGTACAGCACAGTTCAGCAACTGCAAGCTGAGCCTCGTTGGATAAAGGTTCAGAGACGTAACTTAGGTC
TTTTATCTGGATGAGTATTAGCTACCTAAAATTGATAGATATAGAAAACATACATGGACATGGTGCATAGAAATTTCAAC
TGATGTAGATGTAACTATTTAGAAATCCAATGACTGAAAAACACTAAGAGTAAGAACATGAGAAGAATCATTCGCAAAAA
AAAAAGAACATGCGAAGTAACTAGGAAAGCAC------------------------------------------------
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--------------CTATATATGCTATAAGAAATTTAAGTGCCTAGAGAACAAACTTCCAAGAAAACAACAAC---TCAG
TTTCTATATTGTGTGTTTGTTAGATAATGGACATACGGACGGGACTTCCATTGCCGTCAATGGGGGAGATAATGGCGCAA
CTGACAGTATACTTCTTGGTGGAAGACTATCTGAACTACTGGCTCCATCGGCTGTTGCACACAAAATGGGGTTACGAAAA
GATCCACCATGTTCACCATGAGTTCACGGCGCCTATGGCGTATGCCGCATGGTATGGACACTGGGCTGAGATGCTCATCC
TTGCCGTACCCTCCTTGGCTGGCCCTGCTCTCGTCCCATGCCATGTTACCACGCTGTGGATCTGGTTTGCTGCGCGTTTG
GTTGAGAGCCTCAACATACATAGCGGGTAACATCACTTGCACTCCATCTAACGGGCTTTTTTTCT--TTCTTGAATTCAG
ATATCTGACTTGTTTCATTTCTAAACATATTGAGACCAATCAAATTAACTATAAACATGTTCTTTTATGACCTGAG-AAA
AAAAAGCTTTATAACACATGTCTTATCTAAATAATTCTTCGACTACAGATTTAAGTTGCCATTCAATGCTGAGAAGTATA
TACCGTTCTATGGAGGGGCAGAGCACCATGACTACCATCACTACATAGGAGGACAGAGCAAGAGCAACTTCGCTCCTGTT
TTCACCTACTGTGATTATATTTATGGAACGGACAAGGTATCTAGTGTTCTGCTATCTTACACTTGAATGATTTAAAATCA
TATGAATTAAGAACTGATGGCAGGTTACTAAGTCATCTCCCGATC-TTTTTTCAGGGCTACAAATATCACAAGGCAACTC
TGGCAAAGGTAAGCTTCTACCAATCTTTTTG--------TTTTTGAAGAAGCGTCTTTTCAACAATCAACATTATCTATG
CTTAAGCATAATAATATTTCACACCAACTATTACAATAATAGTGTGATATGTTGGCTCTTTTTGCTTGAA----------
-----------AACTTGTCTACTTCCTAGGGCGTGGCATCTT-GGTTCTCTGCTAAAGAACATTATTTGACTCCCACCAA
TCATAGGTTGGATAGATTGG-TTTTGGATTTCCGCTATGATTATTATTTTCCTGTACTTGTGAACAATTCCTGATATTTT
TTCCTTAAGAAATAAGTTTAAAATTATTCATGTTACAGGGATGGACTCCCTCCTTTCACAAATATAATATGGCCTAATTT
TTTGTGAATCGGATGTATATAAATACGTTTTAGTGTTCGTGTTCATTCATTTCATTCCATATGTAGTCCATATTGAAATA
TCCAAACCATCTTATATTTGTAAATGAAGGGAGTATATAATACATACACGCACCCATACCCTCAATTATCAGTTAGCTAT
A-GGAAAGTTTATAAGCTTATATTGTCAATTCTT------TTAAACTCGTAATATGACACG-TACATAGGGAAACAAAAA
GGAAGGTATTTATTTTACAGACTACCTGCATCCTAG-ATTTGTCGAGGAGGCAAACATCTGATGTTATGTAA---TTTTG
TTTGTTTGAATCATTGGATCGAACAGCTGAAGGAGTTGGCAGGCAGCGACGTTCAGAAAGGAGCCGACAATGGATTCAAC
GGTGGAAAGCAGGACTAGAGAGAGGTTGGCTTCAGAGGACTCATGGTCATACAAATCCTATCACTAATTCAAGTGGTCTC
CGGATATATATCCCCATGATGGAGTACACTAGTATAAATAATTGTTCTATGCCAATCATTAAGGTTGAGTGGCTCTTGAA
CCACCGGCAGAGTCGTTCCAAGTGTTAATTATTTCCAGTTCTCCCTCCATTCGTACACATAGCTCCACTACT---CTATT
ATCGGATGTAATAATGGTGCTTAGTTCGTGATATGCTTGAAAGTGTGCGTCTTTGCATACTACGTGACATGTCTCTAGTA
AGCAGGCATGTGGGAACCGTCAAATATGGAGAC-ATAGTCGAGAGCATTTGCCTTTGTGCTTCCAATATCAGATGTTGTA
CATAATTGGACAATCTATCTTTTTCCCTATATTTACGATGCATGTCGTCTTTCGTTGATCAATA-TGTTTTGTGAGGTTT
TCTTTTGGGGGGAATTTTCGATGAGCAATACCAGTATGAGACTACAAAATTCTAGAGGATCACCTTGGCGATCTTGTTAG
TTAGAATTGATGTGTTTGGTTTTAGCCTAACTTCTACGACAAAATAGTTGGCTAGCCAAAATTTTGATGAA---------
----------TTGGTCAACATCAGCTAGAAAAATAAATTTGAATGGGTACAAAAACATTGGCATGCCAAGACATTGGTAG
CCATCCAAACATAGATCAA-CTTTTTTTGTTGTCATGACCAAAACGTTGATAGGGC--ATGAGTGTTGGTCACCATCCAA
ACACACCCAAAGTGTGCACACAAGTATTATTCCTCAATCGCCCTAGAAATCTCCAAAAGGTAATCATGCAAGAATGTTTT
TCAGCTTCTTCGTTCTACAGGCTTCTATCTATCGTGTCGCTTGTGCTTTATCTATAAAGCGAGGTGATA-GCCCATTTCG
TATCTATCGTGTCACTTTTGCAGTGTTTTACATTTGGCAGTGAGAGCAAATCACTACAAGGTCCATGATCGCGACTGCAA
ACTATG
>SNPs
----SSSSSSSSSSSS------SS---------------S----------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
------------SSS--------------------------------------------S--------------------
---------------------------------SSS--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
-------------------S------------------------------------------------------------
---SSSS-------------------------------------------------------------------------
---------S----------------S-S---------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
-----------------------------------------------S---------S----------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S---S------------------------------------------------
----------S---SSS---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--S-------------SS------S--------------S----------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------S-----S-----------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S------------------SSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
------------------S-S-----------------------------------------------------------
-----------------------------------S-----------------S-------------S------------
--------------------------S-------------------------S--------------------------S
------------S-------------------------------------------------------------------
----------------------------------------------------------S-SS------------------
------------------------------------S------S-----------------S------------------
----------------S---------------------------------------------------------------
SS------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
----S-------------------------------------------S-------------------------------
---------------------------------S------------------S---------------------------
---------------------------------------------S---------------S--S---------------
------------------------------SS-------------------------------------S----------
--------------------------------------------------S------------------S----------
---------S----------S----------------S-S----------------------------------------
-S------------------S--------------------S----------------S---------------------
---S-------S------SSS----------------------------------S------------------------
-----------------S------S-----------S------------S---------S-S-------S----------
---S----SS--------------------------S------S-------------------------S----------
------
>forward_1713
--------------------------------------------------------------------------------
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------------GGCAATGGGTGACTCAGGAAT-----------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3662
--------------------------------------------------------------------------------
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-------------------------------------------------------------TTGGTTTGCTGCACGTTTG
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>forward_3551
--------------------------------------------------------------------------------
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-----------TTCACCATGAGTTCACGGCA-------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>reverse_4844
--------------------------------------------------------------------------------
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-------------------------------------------TGAGGAGGCAAACATCTGGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_4331
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------ACTTGTCCA
CTTCCTAGGGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>reverse_5858
--------------------------------------------------------------------------------
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-----------------TGGGCTCTTATCTATCGTGCC------------------------------------------
--------------------------------------------------------------------------------
------
