>input_sequence_29559
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--------------------------------------------------------------------ATGTCAGACTGT
GCCAGGAATAGATTCAATGAGAAAGAAGACTTCCAAGTTGTTTTGGGCAAAGGAAATCCTGGAGAGTCATCTTGCCAGCA
ACATACCAAGTGGATGGCACACTGGACCAGAGCAAGCAGCAGTCCATATGGCAAGAGCTGTAGTCCTTTGGAGGATGACA
ACAATAGGACCTGCACAAAAGATTCTGAAACTTCACCTTTTGAGCTTAGGAAATCCACTGTGGCCGAAAGGCTAATGTTG
GGAAGAAACCATGAAGGAATTTCAATGAAGAATGTGCTGCGGTTAGACCCTAACATGTGGGATGTGGGGCATGATGCTTG
GCAAGAAGCTGAACAAACCAAAACTGAATGGCGAGATGGGCATTTTCAAAGCTGTAAGATCCAGATGCAGAAAGATGAAA
ATTTCTATGCCAAGAGGGTAGTATCAGAAACACTTTCCGTTTGCAGGCTTTCAGACCTACCATTGGATTTTCAGAAACTT
GTGAGCTCAGAAGAGAACCCTGATGATTCACATTGGAACCAGATTCCTATGTTGTCATTCAATAAGAAAGTTGAAACTAT
ACTCAGACCAAAGCGGAAGTATGCGACCGGTACTGTGTTCGATGATCTCTTTGTGCCACAACAAATTCCGAAGCTAAACG
TGGCTCCAT---------------------------------------------CTCGAATGACTGACATGGTCATGGAT
CATTGCAAACCTTCACGGGGCATCAAATATCTCCTAGAAGACCCTACCTGTCTCGTTTCTGATCATTCAGGGAAGAAACT
AAAAGTAGACAGTAACTCATCATCAGATTGTGGAATGGATGAGCAGGGTACAGGTCACTATTTTGCAAACCCAAATCAGG
AGCCACTCGGCAGATGTGGCGAAAAGCAGTTCAATCTTTCAGAAAACAGTGACAAGGGCCAAACAGTTGGAGGTGCGCCT
CAGAATCACAAGTCAAGAACACCTACTAGACTCAGAAAACATGAAGTTGCTGCAGGAGTCATGCTTTCCGCGCCAGCACT
TGGTAAAGAATACGAGACCATACCAATCAATTACTTTATGAAGAGCAAGCAGGATGATGAGGACTTTTATGTTGCAAGTC
ATTCGATATCTGATAAGCACCATGATCTGAATACCCACAGAATGGAATATGCAGCGAATGTAACGGACTCCTGCATGTTC
CCTGATCCAGCTGCAAGCATACTGGCAATGAATAGTAAGGGTGGCGCGGTGACCCGTGAAAGACAACCGGTCGACAGATT
TACAGATTCTGTTGAACAAAACGGTCCCTGTTTATTTGAAATGCTGACAATCCCTTCCAAATCACAGAGTACGTACCCGA
TAGATTCGCTGTCTTCTTGCAGTCCTTTATTTGGAGCCCAGAACCAATTCTCACCTAAAGCTAAAACGATGCGTGGAGAT
TCACAACATGTGTCAAAATCCTCAGCAGGTGAGGGATTATCCTCATATAATGTAATACTATAATAGTATTAACTAAGAGT
ATTTCTTTGGTACACAGTGATAGCTCAAACTCATTTTTAGTCAT--TTTTGCTGTCATAATGTGTTTTTTGGTAATATTG
---AAAACTGAAGTATCAGTCAAATAGTATCGCTCACTTT-TTTGTTCTGGTATTTTGCAGGCACCGCTTCATCGTTGAT
GCAAAAGGTATCAGTGCTGCACTTGCATATCACACTAATGGCCTGTCTTGGGCATAAAAATGAAACACGCTGAGCTGTTT
TTGCTAGGGCCTGTTGTTATACTGTTATTTATTATATGATGAAAACTCATAAGACTTTTATCTTGCATGCAATTTTTCTG
CATCCTCAACTTTGCTTCTCAGAATTAGCACTTTGGT----TATATATCACAACTTTCTGCCTGGAGTATAATTCTACTT
GCTTGGACCGTCTCATCTTGCACCTTGTATGCTTGCTTACGTATTACTTCATACGATTCAATATGGCAGTTCCTTAAAAG
CGGCGTACTTCTCTGTAGTTTTGGACCTGTATCAATTAGTTCACACTGGAAGGGTTA-CCTTTTATTGATACTGATATTC
GCATTATGAACAAATGTACTACAGGACAATGGCTGCGCAGAAAGAGCAAATGAGCAGCTGGCAACTCTGTCCATAGAAGG
ATCGCCAAGATACAACAAAGAAAACATATTTCGTAATGTCAGTGTCAATCACTCGATG----------------------
--------------------CCGGAAACAGAAATCATGGACTTGGACCCCCCGCTGTTCCAAAGCAGCACAAGAAATCAA
GTCCCCAGTGACACGGTTCGGTCGTCGGCGGGTGCCGATCCAAGCGAGAAATGGCTCAAGCGCCTGCTCCATGACACCGC
GGACCCTCATGTCCACCGTTCCAAGAGGCCCAGAACCGGAGACTATCTTCCGGTTGGAGGAGCAGGTGGAATGTCCGGCA
CCGACATCGCCGACCATGTTGAGGCAAGGTGTGTTCGCTGCTGGATAGGAAGGTTGTGCCGGGGTGGCGTCGCCCCTGTT
CCGCACGGAGAACAAGGGCAGGGAACGAGAGCAGCAGCGGAGCCTGACGTCGCGGCCAGGGAACTTGGAGGCCATTTCCC
GAGCATCAAGGCGATGGCGATGATCGGGCGGATGATGAGCAAGGCCCGGCCATTGGATTATCAGAGGAAGGGGCCTTGTG
TTATGTGGAAGGCAGAGGAAGGAGCCTGA---------------------------------------------------
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------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G383700
ACGGAACAAAATGAGTGAATCTAGAACTTTAGTTTTTTTATTTATGACTGCGAAGATATTTTAAGTTTTAAACTTTTAAT
ACAGCATCAGG--AAACAATAATAGGTTCCTTCAAATCATCCTGTCCGCTA-----------TTCCGTTAAATTTTCATA
TATCTTTCCCGTTTAGAAGGGTTCGTTATGTGTACTCAACCAAACTGTTGTTGTCTTTGTCACACTTTCTCTGGTTAGAA
TATTTTTTACACC-CTATTTTTCAGATATCGAAACTAACATAATAGCAATTGTACTTTCACCCCTTC-TTTATGTTTATT
TGTTACCGATGTGTGTATCATTCTTTTGCAAGGACTTGGGATTTCAATGTGTAAACTCATATATCTCTCTCATGACTTGC
TATGATATTTT-GGGACCCTTTCGTATCTGAGTTCAGTTATGTCACATATAATACCTAGCGATCGTGGATTAATCCTAGT
TAAGGTTCACCAAATTGATTGCTAGATGTTTTTGTTCATTTGCAAAAAGTTCTATTGTATTTAGTTTTTCTATGAGATTT
TTAAGTTTTAATGGAGCATACCGAAGTGGTCGGACCCTGCGCAAGCAGGAGCTACGTGCACCAGGCTGCCATTCTAATGG
AGCATCCCGAGAAAAAGATTCCTTCAAATCATCCTCGTCTGTAGAAGAAACTCATTTTTCTTAACTTTTCAGATATCTTT
CCCTGTTTGTAAGGGTTCATTACATGTATTCAACAAAACTGTGGATGTTCCTGTCACACTTACTCTGGTCAGAATGTTTC
TCACACCCTATTTTCCAGATATGGAAACTAACATAGTTACAATTGTAATATGATCCCTTCTTTATGTTTATTTCTTAGTG
ATTTGCATTCTTTTGTCAGGAATTACTCAGG-------------------------------------------------
-----------------------------------TTTCATTGTGTAAACTCATATTTACCTTTTCTTTCAGACTTTTGC
AACTAGTACTGTAATTCTGTAAACTTGTGAAGAAAGGCTACTCG--------ACCCAGTAACTCAATCATGTCAGACTGT
GCCAGGAATAGATTCAATGAGAAAGAAGACTTCCAAGTTGTTTTGGGCAAAGGAAATCCTGGAGAGTCATCTTGCCAGCA
ACATACCAAGTGGATGGCACACTGGACCAGAGCAAGCAGCAGTCCATATGGCAAGAGCTGTAGTCCTTTGGAGGATGACA
ACAATAGGACCTGCACAAAAGATTCTGAAACTTCACCTTTTGAGCTTAGGAAATCCACTGTGGCCGAAAGGCTAATGTTG
GGAAGAAACCATGAAGGAATTTCAATGAAGAATGTGCTGCGGTTAGACCCTAACATGTGGGATGTGGGGCATGATGCTTG
GCAAGAAGCTGAACAAACCAAAACTGAATGGCGAGATGGGCATTTTCAAAGCTGTAAGATCCAGATGCAGAAAGATGAAA
ATTTCTATGCCAAGAGGGTAGTATCAGAAACACTTTCCGTTTGCAGGCTTTCAGACCTACCATTGGATTTTCAGAAACTT
GTGAGCTCAGAAGAGAACCCTGATGATTCACATTGGAACCAGATTCCTATGTTGTCATTCAATAAGAAAGTTGAAACTAT
ACTCAGACCAAAGCGGAAGTATGCGACCGGTACTGTGTTCGATGATCTCTTTGTGCCACAACAAATTCCGAAGCTAAACG
TGGCTCCAT---------------------------------------------CTCGAATGACTGACATGGTCATGGAT
CATTGCAAACCTTCACGGGGCATCAAATATCTCCTAGAAGACCCTACCTGTCTCGTTTCTGATCATTCAGGGAAGAAACT
AAAAGTAGACAGTAACTCATCATCAGATTGTGGAATGGATGAGCAGGGTACAGGTCACTATTTTGCAAACCCAAATCAGG
AGCCACTCGGCAGATGTGGCGAAAAGCAGTTCAATCTTTCAGAAAACAGTGACAAGGGCCAAACAGTTGGAGGTGCGCCT
CAGAATCACAAGTCAAGAACACCTACTAGACTCAGAAAACATGAAGTTGCTGCAGGAGTCATGCTTTCCGCGCCAGCACT
TGGTAAAGAATACGAGACCATACCAATCAATTACTTTATGAAGAGCAAGCAGGATGATGAGGACTTTTATGTTGCAAGTC
ATTCGATATCTGATAAGCACCATGATCTGAATACCCACAGAATGGAATATGCAGCGAATGTAACGGACTCCTGCATGTTC
CCTGATCCAGCTGCAAGCATACTGGCAATGAATAGTAAGGGTGGCGCGGTGACCCGTGAAAGACAACCGGTCGACAGATT
TACAGATTCTGTTGAACAAAACGGTCCCTGTTTATTTGAAATGCTGACAATCCCTTCCAAATCACAGAGTACGTACCCGA
TAGATTCGCTGTCTTCTTGCAGTCCTTTATTTGGAGCCCAGAACCAATTCTCACCTAAAGCTAAAACGATGCGTGGAGAT
TCACAACATGTGTCAAAATCCTCAGCAGGTGAGGGATTATCCTCATATAATGTAATACTATAATAGTATTAACTAAGAGT
ATTTCTTTGGTACACAGTGATAGCTCAAACTCATTTTTAGTCAT--TTTTGCTGTCATAATGTGTTTTTTGGTAATATTG
---AAAACTGAAGTATCAGTCAAATAGTATCGCTCACTTT-TTTGTTCTGGTATTTTGCAGGCACCGCTTCATCGTTGAT
GCAAAAGGTATCAGTGCTGCACTTGCATATCACACTAATGGCCTGTCTTGGGCATAAAAATGAAACACGCTGAGCTGTTT
TTGCTAGGGCCTGTTGTTATACTGTTATTTATTATATGATGAAAACTCATAAGACTTTTATCTTGCATGCAATTTTTCTG
CATCCTCAACTTTGCTTCTCAGAATTAGCACTTTGGT----TATATATCACAACTTTCTGCCTGGAGTATAATTCTACTT
GCTTGGACCGTCTCATCTTGCACCTTGTATGCTTGCTTACGTATTACTTCATACGATTCAATATGGCAGTTCCTTAAAAG
CGGCGTACTTCTCTGTAGTTTTGGACCTGTATCAATTAGTTCACACTGGAAGGGTTA-CCTTTTATTGATACTGATATTC
GCATTATGAACAAATGTACTACAGGACAATGGCTGCGCAGAAAGAGCAAATGAGCAGCTGGCAACTCTGTCCATAGAAGG
ATCGCCAAGATACAACAAAGAAAACATATTTCGTAATGTCAGTGTCAATCACTCGATG----------------------
--------------------CCGGAAACAGAAATCATGGACTTGGACCCCCCGCTGTTCCAAAGCAGCACAAGAAATCAA
GTCCCCAGTGACACGGTTCGGTCGTCGGCGGGTGCCGATCCAAGCGAGAAATGGCTCAAGCGCCTGCTCCATGACACCGC
GGACCCTCATGTCCACCGTTCCAAGAGGCCCAGAACCGGAGACTATCTTCCGGTTGGAGGAGCAGGTGGAATGTCCGGCA
CCGACATCGCCGACCATGTTGAGGCAAGGTGTGTTCGCTGCTGGATAGGAAGGTTGTGCCGGGGTGGCGTCGCCCCTGTT
CCGCACGGAGAACAAGGGCAGGGAACGAGAGCAGCAGCGGAGCCTGACGTCGCGGCCAGGGAACTTGGAGGCCATTTCCC
GAGCATCAAGGCGATGGCGATGATCGGGCGGATGATGAGCAAGGCCCGGCCATTGGATTATCAGAGGAAGGGGCCTTGTG
TTATGTGGAAGGCAGAGGAAGGAGCCTGAGTGGCTGGCTAGCTTTTTAGTTCTTCTGTTTTGTGTGGTGTACTGGTGTAA
TATTTGCCGC-TACATGTCATGTGGTTTGTTCTAAAGAATGT--AAATAAAGTGTACAGTATATGTGTGTAATGTCAGCT
ATAGCTCGTCATATGACCATTTTTTCCAAAGGGCCATTGGTCAAACTTTATTAGCGGCCTAAACTGCTATCCTGACTGTA
CTTTTCCCTTCTCGCTAATAAAGCTTGACCAATGGCCCTTCAAAAAGAAAATAACATTCTAAATACAGATCAATGAAACC
GGATGCAAGGCCAAGTGAAACTGAGTTTACGCTTTGGCTCCACAACGGTTCATCCTCAAAACTTCAAAACGCAACGCACT
TGACATTAAACTATCGATTTCATTAATAGTCGCATTTAAAAAAAGTACCATTAGAAAATGTTGATGACATTTAGAAAACT
GTAACATTTAGAAGAATTTTTTTATAAAATGTAGGAAGTAATCGTAACATTTAAAAAATGTTCATTCGTTTCAAAAATAT
GTTCGTGACATTTTAAAAGTATTAAGAAAATTACAAAAAATGTGTTGTATCATTCAAAAAAATGTTGAACATGTATTTGT
AAAATGCTTAACTTGTATCAAGAAAATGTTCAGAACATCCATTTGAAAATTTTACAACATGTATCAAAAACATGTTCCAG
ATCTATATGAAATATATATGCTTAACTTAACACCAAGGATATGCTGGTTAGGAGACACTGGCGTTCGAATCAGGATGATA
ATCTTTGCCTCATCTGCAGTGAGTTGGCGTATGAGAATAGGATACATCTATTTTTTCACTGCACCTTCAGCTGTAGAATC
TGGAACTATTTGGGTATTGATTGGTCTGGAGGTTCAGATATCCTGCAATGTCTCCTGCACGCCAGGTCTAACTTCACACA
CCCTTTCTTCGTTGAAGTCATACTCACAGCAGCCTGGAATATTTGGATCCGGTGAAATGGCAGAATTTTCAG
>chr1A_28
TTTAGT--------------------------TTTTTTTATTTATGACAGCAAAGAGATTTTAAGTTTTAAACTTTTAAT
ACAGCATCAGG--AAACAATAATAGGTTCCTTCAAATCATCCTGTCCGCTAAAGAAATTAATTTCCGTTAAATTTTCATA
TATCTTTCCCGTTTAGAAGGGTTCGTTATGTGTATTCAACCAGACTGTTGCTGTTCTTGTCACACTTTCTCTGGTCAGAA
TGTTTTTTACACC-CTCTTTTTCAGATATCCAAACTAACATAATAGCAATTGTACTTTCACCCCTTC-TTTATGTGTATT
TGTTACCGATGTGTGTATCATTCTTTTGCAAGGATTTAGGATTTAAATGTGTAAACTCATATATATCTCTCATGACTTGC
TATGATATCTTGGGGACCCTTTCTTAGCTGAGTTCAGTCATGCCACATATAACACCCAGCTATCATGGATTAGTCCTAGT
TAGGTTTAACTAAATTGATTACTAGATGTTTTTGTTCATTTGCAAAAAGTTCTAGTATATTTATTTTTTCTATGAGATTT
TTAAGTTTTGATGGAGCATCCAAAG-------------------------------------------------------
------------AAAAGACTCCTTCAAATCATCCTCGTCTGTGGAAGAAACTCATTTTTGTTAACTTTTCAGATATATTT
CCCTTTTTATAAGGGTTCATTGCATGTATTCAACGAAAGTGTTGATGTTCCTGTCACACTTACTCTGGTCAGAATGTTTC
TAACACCCTATTTTTCAAATATGGAAACTAACATAGTTGCAATTGTACTATGATCCCTTCTTTATGTTTCTTTTTTAATG
ATTCGCATTCTTTTGCCAGGAATTAATTAGTACTCCCTCCGTAAAGAAATATAAGAGCATTTAGATTACTAAAGTAGTGA
TCTAAATGCTCTTATATTTGTTTACAGAGGCAGTATTTCATTGTGTAAACTCATATTTATCTTTGCTTTCAGACTTTTGC
AACTAGTACTGTAATTCTGTAAAGTTGTGAAGAAATGCTACTTGAGTTGTATACCCAGTAACTCAATCATGTCAGACTGC
GCCAGGAATAGATTCAATGAGGAAGAAGACTTCCAAGTTGTTTTGGGCAAAGGAAATCCTGGAGAGTCATCTTGCCAGCA
ACATACCAAGTGGATGGCACACTGGACCAGAGCAAGCAGCAGTCCATATGGCAAGAGCTGTAGTCCTTTGGAGGATGCCA
ACAATAGCAATTGCACAAAAAATTCTGAGACTTCACCTTTTGAGCTTAGGAAATTCACCGTGGCTGAAAGGCTAATGTTG
GGAAGAAACCATGAAGGAATTTCAATGAAGAATGTGCCGCGATTAGACCCTAACATGTGGGGCGTGGCGCATGATGCTTG
GCAAGAAGCTGAACAGACCAAAATTGAATGGCGAGATGGGCATTTTCAAAGCTGTAAGATCCAGATGCAGAAAGATGAAA
ATTTCTATGCCAAGAGGGTAGTATCAGAAACACTTTCCGTTTGCAGGCTTTCAGACCTACCATTGAATTTTCAGAAACTT
GTGAGCTCAGAAGAGAACCCTGATGATTCACATTGTAACCAGATTCCTATGTTGTCATTCAATCAGAAAGTGGAAAGTAT
AGTCAGCCCAAAGCGGAAGTATGCGACCGGTACTGTGTTCGATGATCTCTTTGTGCCACAACAAATTCCGAAGCTAAACG
TTGCTCCAT---------------------------------------------CTCGAATGACTGACATGGTCATGGAT
CGTTGCAAACCTTCGGGGAGCATCAAACATCCCCTAGAAGACCCTACCTGCCTCGTTTCTGATCATTCAGGGAAGAAATT
AAAAGTTGACAATAACTCATCGTCAGATTGTCGAATAGATGAGCAGGATACAGTTCACTATTTTGCAAACCCAAATCAGG
AGCCACCCAGCAGATGTGGTGAAAAGCAGTTCAATCTTTCAGAAAACAGTGACAAGGGCCAAACAGTTGGAGGTGCCCCT
CAGAATCACAAGTCAAGAACACCTACTAGACTCAGAAAACATGAAGTTGCTGCAGGAGTCATGCTTTCGACGCCAGTACT
TGGTAAAGAATACGAGACCAAAGCAATCAATTACTTTATGAACAGCAAGCAGGATGATGAGGATTTTTATGTTGCAAGTC
ATTTGATATCTGATAAGCACCATGATCTGAATACCCACAGAATGGAATATGCAGCGAATGTAACGGACTCCTGCATGTTC
CCTGATCCAGCTGCAAGCATACTGGCAACAAATAGTAAGGGTGGCGCAGTGACCCGTGAAAGACAACCAGTGGACAGATT
TACAGATTCTGTTGAACAAAACGGTCCCTGTTTATTTGAAATGCTGACAATCCCTTCCAAATCACAAAGTACGTACCCGA
TAGATTTGCTGTCTTCTTGCAGTCCTTTATTTGGAGCCCAGAACCAATTCTCACCTAAAGCTAAAACAATGCATGGAGAT
TCACAACATGTGTCAAAGTCCTCAGCAGGTGAGGGATTATCCTCAAATAATGTAATA---TAATAGTATTAACTAAGAGT
ATTTCTTTGGTACACAGTGATAGCTCAAACTCGTGTCAGGTCAT--TTTTGCTGTCATAATGTGTTTGTTGGTAATATTG
---AAAATTGAAGTATCAGTCAAATAGTATCGCTCAGTTT-CTTGTTCTGGAATTTTGCAGGCACCGATTCATCTTTGAT
GCAAAAGGTATCAGTGCTGCACTTGCATAT--------------------------------------------------
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------------------------------------------------------------------------
>chr1B_28
TTTAGT--------------------------TTTTTTTATTTATGACAGTGAAGAGATTTTAAGTTTTAAATTTTTAAT
ACAGCATCAGAGAAAACAATAATAGGTTCCTTCAAACCATTCTGTCGGCTAAAGAAATTAATTTCCGTTAACTTTTCATA
TATCTTTCCCGTTTAGATGGGTTCGTTGTGTGTATTCAACCAAACTGGTGCTGTTCTTGTCACACCTTCTCTGTTCAGAA
TGTTTTTTTACGCTCTATTTTTCAGATATCGAAACTAACATAATAGCAATTGTACTTTGATCCCTTCATTTATGTTTATT
TGTTACTGATGTGTGTATCATTCTTCTGCAAGGACTTA-GATTTCAATGTGTAAACTCATCTAT----------------
----------T-GGGATCATTTCTTATCTGAGTTCGGTCACGTCACATGTAATACCCAGCGATCATGGATTAGTCCTAGT
TAAGGTTCACCAATTTGATTGCTGGATGTTTTTGTTCTTTTGCAAAAA-TTCTAGTGTATTTCTTTTTTCTATGAGATTT
TAAAGTTTTAATAGAGCATCCAAAA-------------------------------------------------------
------------AAA----TCCTCCAAATCATCCTCATCTGTAGAAGAAACTCATTTTTGTTAACTTTTCAGATATATTT
CCCTTTTTATAAGGGTTCATTACATGTATTCAACGAAACTGTTGATGTTCCTGTCACACTTACTCTGGTCAGAATGTTTC
TGACACCCAATTTTTCAGATATGG-AACTAACATAATTACAATTGTACTATGATCCCTT--------------------G
ATTTGCATTATTTTGTCAGGAATTACTTAGG-------------------------------------------------
----------------------------------ATTTCGTTGTGTAAACTCATATTTACCTTTTCTTTCAGACTTTTGC
AACTAGTACTGTAATTCTGTAAACTTGTGAAGAAAGGCTACTCGAGTTTTACACCCAGTAACTCAATCATGTCAGACTGT
GCCACGAATAGATTCAATGAGAAAGAAGACTTCCAAGTTGTTTTGGGCAAAGGAAATCCTGGAGAGTCATCTTGCCAGCA
ACTTACCAAGTGGATGGCACACTGGACCAGAGCAAGTAGCAGTCCATATGGCAGGAGCTGTAGTCCTTTGGAGGATGCCA
ACAATAGCACTTGCGCAAAAGATTCTGAAACTTCACCTTTTGAGCTTAGGAAATCCACCGTGGCCGAAAGGCTAATGTCG
GGAAGAAACCATGAAGGAATTTCAATGAAGAATGTGCCGCGACTAGACCCTAACATGTGGGGTGTGGCGCATGATGCTTG
GCAAGAAGATGAACAGACCAAAACTGAATGGCGAGATGGGCATTTTCAAAGCTGTAAGATCCAGATGCAGAAAGATGAAA
ATTTCTATGCCAAGACAGTAGTATCAAAAACACTTTCCGTTTGCAGGCTTTCAGATCTACCATTGGATTTTCAGAAACTT
GTGAGCTCAGACGAGAACCCTGAT---TCACATTGGAACCAGATTCCTATGTTGTCAGTCAATCAGAAAGTTGAAACTAT
ACTCAGCCCAAAGCGGAAGTATGCGTCCGGTTCTGTGTTTGATGATCTCTTTGTGCCACAACAAATTCCGAAGCTAAACG
TGGGTCCATCCAACTTGATGGCATGCTCACATCAGGAATATGGGCTGCAGTTTCCTCGAATGACTGACATGGTCATGGAC
CATTGCAAACCTTCAGGGGGCATCAAACATCTCCTAGAAGACCCTACCTGTCTCATTTCTGATCATGCAGGGAAGAAACT
AAAAGTTGACAATAACTCATCATCAGATTGTGGAATGGATGAGCAGGGTACAGGTCACTATTTTGCAAACCCAAATCAGG
AGCCGCTCGGCAGATGTGACGAAAAGCAGTTCAACCTTTCAGAAAACAGTGACAA-------------------------
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-----------------------------------------------------------------------------ATT
TACAGATTCTGTTAAACAAAACGATGCCTGTTTATTTGAAATGCTGACAATCCCTTCCAAACCACAAAGTACGTACCCAG
TAGATTCTCTCTCTTCTTGTAGTCCTTTATTTGGAGCCCAGAATCAACTCTCATGTAAAACTAAAACGATGCATGGAGAT
GCACAGTATGTGTCAAAATCCTCAGCAGGTGAGGGATTATCCCCAGTTAATAC-----------AATATTTGCTTAGAGA
ATTTCTTTAGTAACAATCATTAGAAAAAGAAACTTGCATCTTGTCATTTTTCTGTCATAATGTGTTTGTTGATATAATAT
TATAAAAATGAAGTATCGGTCAAACAGTACTGCTCACTTTTTTTGTTCTGGAATTTTGCAGGCATGGCTTCATCGTTGAT
GCAAAAGGTATCAGTGCTGCACTTGCATATCACACTCATGGCCTGCCTTGGGCATAAAAATGAATCGCGCTCAACAGTTT
TTGCTTGGACCTGTTGTTATACTACTATTGTTTATATA---AAAACTCATAAGACTATTATCTTCCATGCAAATTTTCTG
CATCCTCAACTTTGCTTCTGAGAATTAA--------------------CACATCTTTCTGCCTCGAGTATAAGTGTACTT
GCTTGGATTGGCTGATCTTGCACCTTGTATGCTCGCTTACGCATTACTTCGTACGATTCAATATGGCAATTCCTTAAAGC
CGTA-TACTACTCTGTAGTTTTGGACCTTTATCAGTTGATTCACACTGGGAAGCTTTTCCTTTTATTGATACTGATTTTT
GCATTATGAACAAATGTGCTGCAGGACAACATCTGCGCAGAAAAAGCAAATGAGCAGCTGGCAACTCTATCTATAGAAGG
ATCACCAAGATACAACAAAGCAAACATATTTCATAATGCCAATGCCAATCAATACGTTTCATCCAAAGCAACCACTTCCA
GCAAGCAAGAACCCAGCAGCCCCGGAACAGAAACCATGGACTTGGATCCCCTGCCGTTTGAAAGCGGGACAAGAAATCAA
GTCCCCACCGACACAATCCGATCGCCAGCGGGTGCCGATCCAAGCGAAAAATGGCTCAAGCGCCTGCTCCATGACACCGC
AAACCCTCATGTTCACCGTTCCAAGAGGCCCAGAACGGGAGACTGCCGTCCGGTCAGAGGAGCAGGTGGAATGTCCGGCA
CCGACATTGTCGACCCTGTTGAGGCAAGGTGTGTTCGCTGCTGGATAGGGAGGTTGTGCCAGGGTGGCGGCGCCCCTGTT
TCGCTTGGAGAACCAGACGA---AAGGAGAACAACAGCGAAGCCTGACGTCGCGGCCAGGGAATTTGGAGGCCATTTCTC
GAGCATCAAGGCGATGGCGATGATGGGGCGGATGATGAGAAAGATCCGGCCATTTGATCGTGAGAGGAAGGGGCCTTGGG
TTATGTGGAAGGCAGAGGACGGAGCCTGAATGTCTGGCTAGCAGTTCAGTTCTCCTGTTTTGTGTGGTGTAAGGTGACAA
GTTTGCCGTTATATATGTTGGGTGGTTTGTTCTAAAGA------------------------------------------
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>chr1A_2667
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-------------------------CATATCACACTCATGGCCTGTCTTGGGCATAAAAATGAATCACGCTGAATTGTTT
TTGCTTGGACCTGTTGTTATACTGTTATTTATTATATGATGAAAACTCATAAGTCTTTTATCTTGCATGCAATTTTTCTG
CATCCTCAACTTTGCTTCTTAGAATTAGCACTTTGGTCGAGTATATATCACAACTTTCTGCCTGGAGTATAATTCTACTT
GCTTGGACTGTATCATCTTGCACCTTGTATGCTTGCTTACGTATTACCTCATATGGTTCAATATGTCAATTCCTCAAAGG
CGGTGTACTTCTCTATAGTTTTGGACCTCTATCAATTAATTCACATTGGAAGGGTTA-CCTTTTATTGATACTGATATTC
GCATTATGAACAAATGTACTACAGGACAATGGGTGCGCAGAAAGAGCAAATGAGCAGCTGGCAACTCTGTCCATTGAAGG
ATCACCAAGATACAACAAAGAAAACATATTTCGCAAAGTCAATGCCAATCACTCGACG----------------------
--------------------CCGGAAACAGAAATCATGGACTTGGACCCCCCGCTGTTCCAAAGCAGCACAAGAAATCAA
GTCCCCAACGACACGGATCGATTGTCGGCGGGTGCCGATCCAAGCGACAAATGGCTCAAGCGCCTGCTCCATAACACCAC
AGACCCTCATGTCCACCGTTCCAAGAGGCCCAGAACCGGAGACTATCGTCCGGTTGGAGGAGCAGGTGGAATGTCCGGCA
CCTACATTGCCGACCATGTTGAAGCAAGGCGTGTTCGCTGCTGGATAGGAAGATTGTGCCGGGGTGGCGTCGCCCCTGTT
TCGCACGGAGGACCAGGGCAGGGAACAAGAGAAGCAGCGGAGCCTGACGTCGCGGCCAGGGAACTTGGAGGCCATTTCCC
GAGCATCAAGGCGATGGCGATGATCGGGCGGATGATGAGCAAGGTCCGGCCATTTGATTATGAAAGGAAGGGACCTTGTG
TTATGTGGAAGGCAGAGGAAGGAGCCTGAGTGGCTGGCTAGCTTTTTACTTCTTCTGTTTTGTGTGGTGTACTGGTGTAA
TATTTGCCGC-TACATGTCATGTGGTCTGTTCTAAAGATTGTATAAATAAAGTGTATATATGTA-TGTGTAATGTCAGCT
ATAGCTCGTCATATGACCACTTGTT-------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-------S-----------------------
--------------------------------------------------------------------------------
----------------------------------S---------------S---SS-------------------S----
-S------------------------------------------------------------------------------
-------------------------------------S--------------------------S---------------
--------S--------------S--------------S-----------------S-------S-------S-------
------------------------------------------------------S--------S----------------
-------------------S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------S----------------------------------------S----------------S---
----S---S-------------------------S-------S-------------------------------------
-S------------S--------------------------------S---------------------S---S---S--
---------------------------S----------------------------------------------------
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-----------------------------------------------------------------------------S--
-------S--S-----------------------------------------------S---------------------
-------------------------------------S---S-------------------S-----S------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S-----------S----------------------------------------------------
------S----S--------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------SS------S---
--------------------S-S-------------------S--------------------S----------------
---S----------------------------------------------------------------------------
----------------------------SS-----------------S--------------------S--S--------
------------------------------------------------------------------S-------------
------------------------------------------------------------------------S-------
---------------------------------------------S-----------SSS--------------------
--------------------------------S---SSS----------------------------S------------
-------S-------------------------------------------S----------------------------
------------------------------------S---------------------------S--------S------
-----S--S-----------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------S-----------------------------------------------------------S---------S-
---S------------------------S---------S-----------------------------------------
--------------------------------------------------------------------------------
---S-------------------------------------S--S-----------------------------------
--------------------------------------------------------------------------------
-------SS-----------S--------------------------S--------------------------------
S----------------------------------------------S--------------------------------
-------S------------------------------------------------------------------------
S------------S------------------------------------------------------------------
--------------------------------------------S---------S------S------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------S-SSSSSSS---------------
-------------------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_637
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------GCACCAGGCTGCCATTCTAA---
--------------------------------------------------------------------------------
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>reverse_1687
--------------------------------------------------------------------------------
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------ACCAAAGCGGAAGTATGCGA------------------------------------------------------
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------------------------------------------------------------------------
>forward_1456
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GCTTG
GCAAGAAGCTGAACAA----------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_2349
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----------------------------TGAATAGTAAGGGTGGCGCG--------------------------------
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>forward_1868
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--------ACCTTCACGGGGCATCAAAT----------------------------------------------------
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>reverse_2874
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-------------------------------------------------------------------------GCTGTTT
TTGCTAGGGCCTG-------------------------------------------------------------------
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>forward_2368
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----------------------------TGAATAGTAAGGGTGGCGCG--------------------------------
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>reverse_4053
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----------------------------------------------------AGCGGCCTAAACTGCTATCC--------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------
