>input_sequence_29546
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-------------------------------------------------------------------------ATGCTTT
TCAACTTGCCAAGAGTCACAACACCAATTGCTGTACGGTGGTTCATCTCAGTTGCAAATGCAGCAGGCTTTGGTCGAGAT
ATTTCTCCTGTTCAGTTCGCCACCCTGTTAAAGGAATGCAGGTCGGTGAATGCAGTCCATCAAGTTCACCAGAAGCTCAT
TTCTTCGGGTCTTCTTTCTTATCCAGCATCGTTGTTGGAAGTGTCGTTTCCACCTTTGCCATCTCAGCCGTATTTATCAC
CAAGATCTTTGGGTACTGGTGTCGTAGCTGCTTATCTTGCGTGTGGTTCCAAAGATGAGGCTCTCACAGCATTGGAGCAT
GTTGTGCCGTCTCCAGCTGTCTGGTGGAATCTACTCATCCGAGAACACATCAAAGAGGGCCACCTTGACCATGCCATTGC
AGTATCTTGCCGGATGCTGCGTGCTGGAACCAGACCGGACCATTTTACTCTGCCGCATATACTAAAGGCCTGTGGAGAGC
TACCCTCGTACCGTTGTGGTATCACATTACATGGACTTATATGCTGCAATGGCTTTGAGTCAAACGTCTTTGTATGCAAT
GCATTGGTGGCAATGTATGCCCGCTGTGGTTCACTGAAGGAAGCCAGCCAGGTGTTCGAGGAAATAGCTCAGAGGGGAAT
TGATGATGTCATATCATGGAATTCAATTGTTGCAGCCCATGTTAAACACAATAGTCCATGGACCGCGTTGGATATGTTCT
CGAAAATGGCAATGATTGTCCACGAGAAGGCTACAAATGATAGGTCTGACATCATTAGCATTGTGAACATTCTTCCTGCA
TGTGCTTCTCTAAAGGCACTACCTCGAACTAGAGAAATTCATGGAAATACCATTCGGAATGGTACATTTCCAGATGTTTT
TGTAGGCAATGCTCTGGTTGATACTTATGCAAAATGTGGTTCAATGAAGAATGCGGTAAAGGTTTTCAATATGATGGAAA
TCAAAGATGTTGTTTCTTGGAATGCAATCGTGACTGGCTACTCCCAAAGTGGGAACTTTGAGGCAGCCTTTGAGATTTTT
AAGAATATGCGCAAGGAAAACATCTCAGCAGATGTAGTGACCTGGACTGCTGTAATTGCCGGGTATGCTCAGAGAGGATG
TGGCCAAGAGGCACTCAATGTTTTCCGACAAATGCTCTTTTCTGGTTCAGAGCCAAATTCTATCACAATCATCTCTGTGC
TGTCTGCTTGTGCTTCCTTGGGAGCATATTCTCAGGGTATGGAAACTCATGCCTACTCTCTGAAGAATCGTCTTCTATCT
TTGGATAACCATTTTGGTGGTACTGGCGATGAGGAGGATCTCATGGTGCACAATGCTTTAATAGATATGTACTCAAAGTG
CAGAATCTTCAAAGCTGCACGTTCTATATTTGACTCTATACCCCGAAAGGAACGTAATGTGGTGACTTGGACTGTGATGA
TAGGTGGGTATGCACAATATGGGGACTCTAATGATGCCCTCGGGCTTTTCTCACAGATGCTCTCGAAACCACACGCAGTT
GCCCCGAATGCATTTACGGTTTCCTGCATTCTGATGGCCTGTGCACATCTGTCAGCCCTGCGTGTGGGTAAGCAAATCCA
TGCTTATGTGGTTCGTCAACATCAATATGAAGCATCTACATACTTTGTGGCAAACTGTCTTATTGACATGTACTCAAAGT
GTGGTGATGTCGATACAGCTAGGTATGTATTTGATGGCATGTCACAAAGGAATGATATTTCATGGACATCAATGATGGCA
GGATATGGGATGCATGGTCGTGGCAATGAGGCCCTGGAAATATTTGACAAGATGCAAATGGCAGGCTTTGTTCCTGATGA
TATATCATTCCTGGTTGTTCTATATGCTTGCAGCCATTCTAGAATGATTGATCGAGGCCTGGATTACTTTGACAGCATGA
GCAGAGATTACGGTGTGGCTGCCTGTGCAGAGCATTATGCTTGTGTCATTGACTTGCTGGCCCGCTCCGGGCAGATAGAT
AGGGCATGGAATATGGTCAAAGACATGCCAATGGAGCCTACTGCAGTAGTCTGGGTTGCATTGCTTAGTGCGTGTAGAGT
ACATTCAAATGTAGAACTTGCTGAATATGCTCTTAACAAGCTAGTTGAGATGAATGCAGAGAATGATGGATCTTACACGC
TCATCTCCAACATATATGCTAATGCAAGGCGTTGGAAGGATGTAGCCAGAATCAGAAACCTGATGAAGAACTCCGGGATT
AAGAAGAGGCCCGGTTGTAGTTGGGTCCAGGGTAAGAAAGGAACTGCGTCTTTCTTTGTTGGAGATCGATCGCATTCTCT
ATCCCCTCAGATTTATGCCCTTCTGGAGAGACTGATTGATCGCATCAAATCTATGGGTTATGTTCCTGAGACAAATTTTG
CACTCCACGATGTCGATGATGAGGAGAAAAATAACCTGCTTGCTGAGCACAGCGAGAAGCTTGCTCTCGCATATGGCCTC
CTCACAACTTCCCCTGGTTGTCCAATAAGGATCACAAAGAACCTGCGCGTTTGCGGTGATTGCCACAGTGCTTTCACCTA
CATCTCAAAGATTGTTGACCATGAGATCATTGTGCGGGACTCCAGTCGCTTTCATCATTTTAAGAATGGTGTGTGCTCTT
GTGGTGACTATTGGTGA---------------------------------------------------------------
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------------------------
>chr3A_1_TraesCS3A01G104900
CGAGTGCTGGATTCCCTTAGGCCCCGCTCGCTCCAGCGCGCTCCCCGCAGCTTCGTTCTTTCTGCTCACCCTCCACCCTA
GCACGGCGCCGCACGGCCGCACCCTCACGCGCCGCTGGCACTCCGGCCCGGGCGCCAGCTCCAACCAGCGCTCGAACCTC
GACCGGCGACCGACCAGCAGAGCTTCGCGCGGCCGTTCCCTCTCCCAGTCGTCGCCGCCACCGCCAAGCCAAGGGACGAG
GCGGGGGCGGTGCGGCTGCCGCCGGAACCTCAAACCACTCGCTGCCTCTGAAGAACAGAACTTTGTTAGCAACCGGAGCA
AAAACCAATCGATCAGCAAGCGCTGGAAGCGGCGGCGTGCGTGCGTGTGATTCAGCGATTCCCTCGCTCCCTGCTGGTAA
TTTCCTGTCTCCTCGCCTCTCCCTGCCCACTTGTGATGTCCGTCAGTCCCATGTGTCATGTCTGAGATGGATGCGTGCCA
GTCTTGAATTTAATTCCAGTGTATAATAGAATTAAGCACTAAATTC----------------------------------
--------------------------------------------------------------------------------
GTAGTATGTTCAGCTCAAGCATGTAGGAGTAGTATTTTGTAAGCAATGTGAACAAGAGAAATGCAGTGTGGA--------
--------------------------------------------------------------------------------
------------------------------------------------------GTAGCTTCTTTTTTTTAACAA---GG
GAGTGGTGCACAGTGCGCCGAATTTCATTTCAAACTGAGCTCAGATACATTGGACAGTATGA--------ATGCTAAACC
CAGGACAGTCTAAATTAACAAGCTTCCGAACGAAAGGACAACTAGATTGCCTGTGAGCTA--------------------
--------------------------------------------------------------GTTTTACGCACGCAAAGA
CAGGTTATGATCCGGACTTTGCGCCTGCTGGCATTTTAGTGTAGCTCTGCCACAGTAAGGCTCGAGTGCATGTGCACTTA
TTTTCTTGATCTTTGCCTACTCTTCTTTTCTGCTCCTTACATCAATTTGTA-TTGATTGAAATACTATGTGTATGACACC
T---TCTCATTTTGTTCTCTTTCATTGTACAGTGATGCGATGACTGCTTTGAGGGATTAGTCTGCACAATATTATGCTTT
TCAACTTGCCAAGAGTCACAACACCAATTGCTGTACGGTGGTTCATCTCAGTTGCAAATGCAGCAGGCTTTGGTCGAGAT
ATTTCTCCTGTTCAGTTCGCCACCCTGTTAAAGGAATGCAGGTCGGTGAATGCAGTCCATCAAGTTCACCAGAAGCTCAT
TTCTTCGGGTCTTCTTTCTTATCCAGCATCGTTGTTGGAAGTGTCGTTTCCACCTTTGCCATCTCAGCCGTATTTATCAC
CAAGATCTTTGGGTACTGGTGTCGTAGCTGCTTATCTTGCGTGTGGTTCCAAAGATGAGGCTCTCACAGCATTGGAGCAT
GTTGTGCCGTCTCCAGCTGTCTGGTGGAATCTACTCATCCGAGAACACATCAAAGAGGGCCACCTTGACCATGCCATTGC
AGTATCTTGCCGGATGCTGCGTGCTGGAACCAGACCGGACCATTTTACTCTGCCGCATATACTAAAGGCCTGTGGAGAGC
TACCCTCGTACCGTTGTGGTATCACATTACATGGACTTATATGCTGCAATGGCTTTGAGTCAAACGTCTTTGTATGCAAT
GCATTGGTGGCAATGTATGCCCGCTGTGGTTCACTGAAGGAAGCCAGCCAGGTGTTCGAGGAAATAGCTCAGAGGGGAAT
TGATGATGTCATATCATGGAATTCAATTGTTGCAGCCCATGTTAAACACAATAGTCCATGGACCGCGTTGGATATGTTCT
CGAAAATGGCAATGATTGTCCACGAGAAGGCTACAAATGATAGGTCTGACATCATTAGCATTGTGAACATTCTTCCTGCA
TGTGCTTCTCTAAAGGCACTACCTCGAACTAGAGAAATTCATGGAAATACCATTCGGAATGGTACATTTCCAGATGTTTT
TGTAGGCAATGCTCTGGTTGATACTTATGCAAAATGTGGTTCAATGAAGAATGCGGTAAAGGTTTTCAATATGATGGAAA
TCAAAGATGTTGTTTCTTGGAATGCAATCGTGACTGGCTACTCCCAAAGTGGGAACTTTGAGGCAGCCTTTGAGATTTTT
AAGAATATGCGCAAGGAAAACATCTCAGCAGATGTAGTGACCTGGACTGCTGTAATTGCCGGGTATGCTCAGAGAGGATG
TGGCCAAGAGGCACTCAATGTTTTCCGACAAATGCTCTTTTCTGGTTCAGAGCCAAATTCTATCACAATCATCTCTGTGC
TGTCTGCTTGTGCTTCCTTGGGAGCATATTCTCAGGGTATGGAAACTCATGCCTACTCTCTGAAGAATCGTCTTCTATCT
TTGGATAACCATTTTGGTGGTACTGGCGATGAGGAGGATCTCATGGTGCACAATGCTTTAATAGATATGTACTCAAAGTG
CAGAATCTTCAAAGCTGCACGTTCTATATTTGACTCTATACCCCGAAAGGAACGTAATGTGGTGACTTGGACTGTGATGA
TAGGTGGGTATGCACAATATGGGGACTCTAATGATGCCCTCGGGCTTTTCTCACAGATGCTCTCGAAACCACACGCAGTT
GCCCCGAATGCATTTACGGTTTCCTGCATTCTGATGGCCTGTGCACATCTGTCAGCCCTGCGTGTGGGTAAGCAAATCCA
TGCTTATGTGGTTCGTCAACATCAATATGAAGCATCTACATACTTTGTGGCAAACTGTCTTATTGACATGTACTCAAAGT
GTGGTGATGTCGATACAGCTAGGTATGTATTTGATGGCATGTCACAAAGGAATGATATTTCATGGACATCAATGATGGCA
GGATATGGGATGCATGGTCGTGGCAATGAGGCCCTGGAAATATTTGACAAGATGCAAATGGCAGGCTTTGTTCCTGATGA
TATATCATTCCTGGTTGTTCTATATGCTTGCAGCCATTCTAGAATGATTGATCGAGGCCTGGATTACTTTGACAGCATGA
GCAGAGATTACGGTGTGGCTGCCTGTGCAGAGCATTATGCTTGTGTCATTGACTTGCTGGCCCGCTCCGGGCAGATAGAT
AGGGCATGGAATATGGTCAAAGACATGCCAATGGAGCCTACTGCAGTAGTCTGGGTTGCATTGCTTAGTGCGTGTAGAGT
ACATTCAAATGTAGAACTTGCTGAATATGCTCTTAACAAGCTAGTTGAGATGAATGCAGAGAATGATGGATCTTACACGC
TCATCTCCAACATATATGCTAATGCAAGGCGTTGGAAGGATGTAGCCAGAATCAGAAACCTGATGAAGAACTCCGGGATT
AAGAAGAGGCCCGGTTGTAGTTGGGTCCAGGGTAAGAAAGGAACTGCGTCTTTCTTTGTTGGAGATCGATCGCATTCTCT
ATCCCCTCAGATTTATGCCCTTCTGGAGAGACTGATTGATCGCATCAAATCTATGGGTTATGTTCCTGAGACAAATTTTG
CACTCCACGATGTCGATGATGAGGAGAAAAATAACCTGCTTGCTGAGCACAGCGAGAAGCTTGCTCTCGCATATGGCCTC
CTCACAACTTCCCCTGGTTGTCCAATAAGGATCACAAAGAACCTGCGCGTTTGCGGTGATTGCCACAGTGCTTTCACCTA
CATCTCAAAGATTGTTGACCATGAGATCATTGTGCGGGACTCCAGTCGCTTTCATCATTTTAAGAATGGTGTGTGCTCTT
GTGGTGACTATTGGTGATGGCTTCTGAGGCTGAAGCATGAACTGAAAGTGCATTCCAATTGGTTTTTGTACACAGAATGT
ACTAATGTACTTACCATTCCTTGCTACTGATTAGCCAATGAAGAGCTGAATAGTTTCTCCCCTCCATTGCAATTTTCTTT
ACAAATATTTCACAGTTCTCTTAAGAGGTATCACCTGGAG--------------------TCTTCATTTATTATGCTGAT
TTCATTAAAAA----TATTATGGAAATATACATATTTCTTGAGAAATGTG--TTTTTGTCTGTCAGTACTTCAA---ACG
TT--GTTTTTGTCAGACCAAGTTATTTAAATTA----------TCTGATACTCCCTCCATTCCTAAATATAAGTCTTTGT
AGACATTCCACTATGGACTACATACGGATGTATATAGATGCATTTGACTTATATTTAGGAACGGAGGGAGTACATTTTAG
AGGTTTATATTTGGTCATTAAAAGGCAAATTAATCATCATTGGTGGAATGCTTGACTGCCGTGCCTATCAAAATCATGAA
AA-TAAGT----TACTGTGTA-CATTCCATTGTTCCTAAGTTTCTGTTCCAGATGGATTTTGCTCATCATAGGAGGTGTT
ACAGTGTTCTGCTGGAGTTCTCATGATTCTCATTAGATAACTGTTGGAAAAAAGAATGTTACAATTTTATTGTGCTAATA
ATACAAAATCTCAGGTTGCGACACAAGTACTATAGCAAAATCCATCTCACACTACATTGTATTTTTTTTCTGGTTGTTCA
TGTTTCACCTTGCCTGAGCTCGGTTGTCGTTCAGCGCCCCGATGTGCTCCAGTCTGGTTCTGACCTTATCAAGTTTTTGC
CTTAACACAGTGATTTCATCTCTTGTGTTTTGAGCGGAGAAGTTTCTTAACAAATCAGGAAGCACTGATAAAAGAATCTG
AAACAGAAGATTGACACAATTTCAGAAAGGTCATCCCACATTTCATTCTCAGGGTTTTCATTCACTTCCAATTCGATGAG
AACATCAAATATGGCTGTTTCGGT
>chr3B_330
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGATCGTCAAGCACTGGAAGAGGCGGCG----TGCGTGTGATTCAGCGAGTCCCTCTCTCCCTGCTGGTAA
TATTGTGTTTCCTTGCCTCTCCCTGCCCACTTGTGATGTCCGTCAGTCC-ATGTGTCATGTGTGAGATGGATGCGTCTCA
ATCTTGAACTTAATTTGAGTGTCTG---GAATTAAGCACTAAATGGCAGTCCATTCTGATTTGCACTGCAATTTTCTTCT
TCTCATTCATTCTTAGTTGCTTTTATTAGTATTGAGAGAAGGGCAGGGAGGTACTGCAGACTGGAGAGTGCCATGGTTGA
GTAGCTTGTTCAACTCAGGCAT------GTAGTATTTTGTAAGCAATGTGGACAAGAGAGATGCTATTTTCCACTATAGT
TTTTTTTAGAACAAGGCTCAAGAAGAGCCCGGCTTTGAATTAACAAAGCCATCAACCGGCCAGGATTACATCGAACAACA
ATGAAAAAAGAAAAGAAACAGCGAGACGATACAAGAGAAATGCTATTTTCTAGTGTAGTTTTTTTTATTGGAACAAGTGG
GAGGCGCACAA--TTCGCCAAATTTCATTTCAAACTGAGCTCAGATACATTGTGCAGCATGAATGCTATTATGCTAAACC
CAGGACAGTCTAGATTAACAAGCTTCTGAGCGAAAGGACAACTAGATTGCCTGTCAGCTA--------------------
--------------------------------------------------------------GTTTTATGCACGCAAAGA
CAGGTTCTGATCCGAACTTTGCCCCTGCGACATC-------TAGCTCTGCCACAGCAAGGCTTGAGGGCGTGTGCATTTA
TTTTCTTGATCTTTGCCTGCTCTTCTTTTCTGCTCCTTACATCAATTTGTA-TA-ATTGAAAGACTATGTGTACGACACC
TTCTTCTCATTTTGTTCTTTTTCGTTGTACAGTGATGCGATGACTGCTTTGAGGGATTAGTCTGCACAATATTATGCTTT
TCAACTTGCCAAGAGTCACAACACCAATTGCTGTACGGTGGTTCATCTCAGTTGCAAATGCAGCAGGCTTTGGCCGAGAT
GTTTCTCCTGTTCATTTCGCCGCCCTGTTAAAGGAATGCAGGTCTGTGAATGCAGTCCATCAAGTTCACCAGCAGCTAAT
TTCTTCGGGTCTTCTTTCTTATCCAGCATCATTGTTGGAAGTGTCATTTCCACCACTGCCATCTCAACCGTTTTTATCAC
CGAGATCTTTGGGTACTGGTGTTGTAGCTGCTTATCTTGCGTGTGGTTCCACAGATGAGGCTCTCTCAGTGTTGGAGCAT
GTTGTACCGTCTCCAGCTGTCTGGTGGAACCTACTCATCCGAGAACATATCAAAGAGGGCCACCTTGACCATGCAATTGC
GGTATCTTGCCGGATGCTGCGTGCTGGAACCAGACCGGACCATTTCACTCTGCCGCATATACTAAAGGCCTGTGGAGAGC
TACCCTCGTACCATTGTGGTATCACATTCCATGGACTTATATGCTGTAATGGCTTTGAGTCAAACGTCTTTGTATGCAAT
GCATTGGTGGCGATGTATGCCCGCTGTGGTTCACTGAAGGAAGCCAGCCAGGTGTTCGAGGAAATAGCTCAGAGGGGAAT
TGATGATGTCATATCATGGAATTCAATTGTTGCAGCCCATGTTAAACACAATAGTCCATGGACCGCGTTGGATATGTTCT
CGAAAATGGCAATGATTGTCCACGAGAAGGCTACAAATGATAGGTCTGACATCATTAGCATTGTGAACATTCTTCCTGCA
TGTGCTTCTCTAAAGGCACTACCTCGAACTAGAGAAATTCATGGAAATACCATTCGGCATGGTACATTTCCAGATGTTTT
TGTAGGCAATGCTCTGGTTGATACTTATGCAAAATGTGGTTCAATGAAGGATGCGGTAAAGGTTTTCAATATGATGGAAA
TCAAAGATGTTGTTTCTTGGAATGCAATCGTGACTGGCTACTCCCAAAGTGGGAACTTTGAGGCAGCCTTTGAGATTTTT
AAGAATATGCGCAAGGAAAACATCTCAGCAGA------------------------------------------------
--------------------------------------------------AGCCAAATTCTGTCACAATCATCTCTGTGC
TGTCTGCTTGTGCTTCCTCGGGGGCATACTCTCAGGGTATGGAAACTCATGCCTACTCTCTGAAGAATTGTCTTCTATCT
TTGGATAACCATTTTAGTGGTAATGGCGATGATGAGGATCTCATGGTGCACAATGCATTAATAGATATGTACTCAAAGTG
CAGAATCTTCAGAGCTGCACGTTCTATATTTGATTCTATACCCCGAAAGGAACGTAATGTGGTGACTTGGACTGTGATGA
TAGGTGGTTATGCACAATATGGGGACTCAAATGATGCCCTCGAGCTTTTCTCACAGATGGTCTTGAAACCACACGCAGTT
GCTCCAAATGCATTTACGGTTTCCTGCATTCTGATGGCCTGTGCACATCTGTCAGCCCTGCGTGTTGGTAAGCAAATCCA
TGCTTATGTGGTTCGTCAACATCAATATGAAGCATCTACATACTTTGTGGCAAACTGTCTTATTGACATGTACTCAAAGT
GTGGTGATGTCGATACAGCTAGGTATGTATTTGATGGCATGTCACAAAGGAATGACATTTCATGGACATCAATGATGGCA
GGATATGGGATGCATGGTCGTGGCAATGAGGCCCTGGAAATATTTGACAAGATGCAAATGGCAGGCTTTGTTCCTGATGA
TATATCATTCCTGGTTGTTCTATATGCTTGCAGCCATTCTAGAATGATTGATCGAGGCCTGGATTACTTTGACAGCATGA
GCAGAGACTACGGTGTGGCTGCCAGTGCAGAGCATTATGCTTGTGTCATTGACTTGCTGGCCCGCTCCGGGCAGATAGAT
AGGGCATGGAATATGGTCAAGGACATGCCAATGGAGCCTACTGCAGTAGTCTGGGTTGCATTGCTTAGTGCCTGTAGAGT
ACATTCAAATGTAGAACTTGCTGAATATGCTCTTAACAAGCTAGTCGAGATGAATGCAGAGAATGATGGATCTTACACGC
TCATCTCCAACATATATGCTAATGCAAGGCGTTGGAAGGATGTAGCCAGAATCAGAAACCTGATGAAGAACTCCGGGATT
AAGAAGAGGCCCGGTTGTAGTTGGGTCCAGGGTAAGAAAGGAACTGCGTCTTTCTTTGTTGGAGATCGATCGCATTCTCT
ATCCCCTCAGATTTATGCCCTTCTGGAGAGACTGATTGATCGCATCAAATCTATGGGTTATGTCCCTGAGACAAATTTTG
CACTCCATGATGTCGACGATGAGGAGAAAAATAACCTTCTTGCTGAGCACAGCGAGAAGCTTGCTCTCGCATATGGCCTC
CTCACAACTTCCCCTGGATGTCCAATAAGGATCACAAAGAACCTGCGCGTTTGTGGTGATTGCCACAGTGCTTTCACCTA
CATCTCAAAGATTGTTGACCATGAGATCATTGTGCGGGACTCCAGTCGCTTCCATCATTTTAAGAATGGTGTGTGCTCTT
GTGGTGACTATTGGTGATGGCTTCTGAGGCTGAAGCATAAACTGAAAGTGCATTCCAATTGGTTTTTGTACACAGAATGT
ACTAATGCACTTACCATTCTTTGCTACTGATTATCCAATGAAGAGCTGAATAGTTTCTCCTCGCCATTGCTATTTTC---
ACAAATATTTTACAGTTCTCTTAAGAGGTATCACCTGCAG--------------------TCTTCATTTATTATGCTGAT
TT--------A----TATAATCGAAATCTGTATTTTTCTTGAAAAAATATGTTTTT-GTCTGTCGA---TTCAA---ACG
TTTAATTTTTGTCAGACCAAGTTATTAAAATCA----------TCTGG--------------------------------
---------------------------------------------------------------------ATACATTTCAG
AGGTTTATATTTGGTCATTAAAAGGTAAATCAATCATCATTGGTCCAATGCTTGACTGTCGTACCTATCAAAATCATGAA
AAATAAGT----TACTGCGTACCATTGCATTGGTCCTAAGTTTCTGTTCCAGATAGATTTTGCTCATCATAGGAGGTGTT
ACAGTGTTATCA------------------------------GTTGGAAAAAAGAATGTTACAATTTTATTGTGCTAATA
ATACGAAATCTCAGGTTGCGACAAAAGTACTATTGCAAAATCCAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3D_559
TATTTTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGCAATATGGACAAGAGAT--------------------
--------------------------------------------------------------------------------
-----------------------------------AGAAATGCTAATTTCTACTGTAGCTTCTTTTTTTTACAAG---GG
GAGGTGCACAA--TGCGCCAAATTTCATTTCAAACTGAGCTCAGATACATTGTACAGCATGA--------ATGCTAAACC
CAGGACAGTCTAAGTTAACAAGCTTCTGAACGAAAGGACAACTAGATTGCCTGTGAGCTACTCCCTCCGTCCCATAATCT
AAGACGTTTTTTGACACTACACTAGTGTCAAAAAACGTCCTATATTATGGGACGGGGGAGTAGTTTTACGCACGCAAAGA
CAGGTTCTGATCCGGACTTTGCCCCTGCTGACATTCTAGTGTAGCTCTGCCACAGTAAGGCTCGAGGGCGTGTCCATTGG
TTCTCTTGATCTTTGCCTGCTCTTCTTTTCTGCTCCTTACATCAATATGTATTA-ATTGAAAGACTATGTGTATGACACC
TTCTTCTCAATTTGTTCTTTTTCATTGCACAGTGATGCGATGACTGCTCTGAGGGATTAGTCTGCACAATATTATGCTTT
TCAACTTGCCAAGAGTCACAACACCAATTGCTGTACGGTGGTTCATCTCAGTTGCAAATGCAGCAGGCTTTGGTCGAGAT
GTTTCTCCTGTTCATTTCGCCGCCCTGTTAAAGGAATGCAGGTCGGTGAATGCAGTCCATCAAGTTCACCAGCAGCTCAT
TTCTTCGGGTCTTCTTTCTTATCCAGCGTCGTTGTTGGAAGTATCATTTCCACCTTTGCCATCTCAGCCGTATTTATCAC
CAAGATCTTTGGGTACTGGTGTCGTAGCTGCTTATCTTGCGTGTGGTTCCAAAGATGAGGCTCTCACAGCATTGGAGCAT
GTTGTGCCGTCTCCAGCTGTCTGGTGGAATCTACTCATCCGAGAACACATCAAAGAGGGCCACCTTGAACATGCCATTGC
AGTATCTTGCCGGATGCTGCGTGCTGGAACCAGACCGGACCATTTTACTCTGCCGCATATACTAAAGGCCTGTGGAGAGC
TACCCTCGTACCGTTGTGGTATCACACTCCATGGACTTATATGCTGCAATGGTTTTGAGTCAAACGTCTTTGTATGCAAT
GCATTGGTGGCGATGTATGCCCGCTGTGGTTCACTGAAGGAAGCCAGCCAGGTTTTCCAGGAAATAGCTCAGAGGGGAAT
TGATGATGTCATATCATGGAATTCAATTGTTGCAGCCCATGTTAAACATAATAGTCCATGGACTGCGTTGGATATGTTCT
CGAAAATGTCAATGATTGTCCATGAGAAGGCTACAAATGATAGGTCTAACATCATTAGCATTGTCAACATTCTTCCTGCA
TGTGCTTCTCTGAAGGCACTACCCCGAACTAGAGAAATTCATGGAAATGCCATTCGGCATGGTACATTTCCAGATGTTTT
TGTAGGCAATGCTCTGGTTGGTACTTATGCAAAATGTGGTTCAATGAAGGATGCGGTAAAGGTTTTCAATATGATGGAAA
TAAAAGATGTTGTTTCTTGGAATGCAATCGTGACTGGCTACTCCCAAAGTGGCAACTTTGAGGCAGCCTTTGAGATTTTT
AAGAATATGCGCAAGGAAAACATCTCAGCAGATGTAGTGACCTGGACTGCTGTAATTGCTGGGTATGCTCAGAGAGGATG
TGGCCAAGAGGCACTCAATGTTTTCCGACAAATGCTCTTTTCTGGTTCAGAGCCAAATTCTATCACAATCATCTCTGTGC
TGTCTGCTTGTGCTTCCTTGGGAGCATATTCTCAGGGTATGGAAACTCATGCCTACTCTCTGAAGAATCGTCTTCTATCT
TTGGATAACCATTTTGGTGGTACTGGCGATGAGGAGGATCTCATGGTGCACAATGCTTTAATAGATATGTACTCAAAGTG
CAGAATCTTCAAAGCTGCACGTTCTATATTTGACTCTATACCCCGAAAGGAACGTAATGTGGTGACTTGGACTGTGATGA
TAGGTGGGTATGCACAATATGGGGACTCTAATGATGCCCTCGAGCTTTTCTCACAGATGCTCTCGAAACCACACGCAGTT
GCCCCGAATGCATTTACGGTTTCCTGCATTCTGATGGCCTGTGCACATCTGTCAGCCCTGCGTGTTGGTAAGCAAATCCA
TGCTTATGTGGTTCGTCAACATCAATATGAAGCATCTACATACTTTGTGGCAAACTGTCTTATTGACATGTACTCAAAGT
GTGGTGATGTCGATACAGCTAGGTATGTATTTGATGGCATGTCACAAAGGAATGACATTTCATGGACATCAATGATGGCA
GGATATGGGATGCATGGTCGTGGCAATGAGGCCCTGGAAATATTTGACAAGATGCAAATGGCAGGCTTTGTTCCTGATGA
TATATCATTCCTGGTTGTTCTATATGCTTGCAGCCATTCTAGAATGATTGATCGAGGCCTGGATTACTTTGACAGCATGA
GCAGAGATTACGGTGTGGCTGCCGGTGCAGAGCATTATGCTTGTGTCATTGACTTGCTGGCCCGCTCCGGGCAGATAGAT
AGGGCATGGAATATGGTCAAAGACATGCCAATGGAGCCTACTGCAGTAGTCTGGGTTGCATTGCTTAGTGCGTGTAGAGT
ACATTCAAATGTAGAACTTGCTGAATATGCTCTTAACAAGCTAGTTGAGATGAATGCAGAGAATGATGGATCTTACACGC
TCATCTCCAACATATATGCTAATGCAAGGCGTTGGAAGGATGTAGCCAGAATCAGAAACCTGATGAAGAACTCCGGGATT
AAGAAGAGGCCCGGTTGTAGTTGGGTCCAGGGTAAGAAAGGAACTGCGTCTTTCTTCGTTGGAGATCGATCGCATTCTCT
ATCCCCTCAGATTTATGCCCTTCTGGAGAGACTGATTGATCGCATCAAATCTATGGGTTATGTCCCTGAGACAAATTTTG
CACTCCACGATGTCGATGATGAGGAGAAAAATAACCTGCTTGCTGAGCACAGCGAGAAGCTTGCTCTCGCATATGGCCTC
CTCACAACTTCCCCTGGTTGTCCAATAAGGATCACAAAGAACCTGCGCGTTTGCGGTGATTGCCACAGTGCTTTCACCTA
CATCTCAAAGATTGTTGACCATGAGATCATTGTGCGGGACTCCAGTCGCTTCCATCATTTTAAGAATGGTGTGTGCTCTT
GTGGTGACTATTGGTGATGGCTTCTGAGGCTGAAGCATAAACTGAAAGTGCATTCCAATTGGTTTTTGTACACTGAATGC
ACTCTTAGGAGAACTGATTAACCGC-------------TGAAGAGCTGAATAGTTTCTCCTCGCCGTTGCTATTTTCTTT
ACTAATATTTCACAGTTCACTTAAGAGGTATCACCTGCAGAGTGTTGATATTTTCTCACATCTTCATTTGTTATGCTGAT
TTCATTAGAAAAAAGTACAATTGAAATCTATACTTTTCTTGAAAAATGTG--TTTT-GTCTGTCAGTATATATACTTACG
TTCAGTTTTTGTCAGGCCAAATAGAGATTAATCATTTAATTTCTCTGG--------------------------------
---------------------------------------------------------------------GTATATTTCAG
AACTTTATATTTGTTCATTAAAAGGTTATTATTGGTCGG--------ATGCTTGACTGTCGTGCCTATCAAAATCATGAA
AA-TAAGTTACGTACTGTGTACCATTCCATTGGTCCTAATTTTCTGTTCCAGATGGATTTTGCTCATCATTGGAGGTGGT
ATAGTGTTCTGCTGGAGTTCTCAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>SNPs
SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----SS-----S-------S-------SSSS-----------------S------S--------------
-S-SS---S----S-----------------------------------S-----------S--------------SS--
S-------S------SS-----S-SSSS----------------SS----------------------------------
--------------------------------------------------------------------------------
----SS------S----S----SSSSSS----------------------S--------S----SS-S-SSS--------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
---SS-SS--SSS------S--------------------------------S----S----------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
------S---------------S-------S----S------------------------------S--S------S---
------------------S----------------------------------SS-------S-----------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------S------S--------------------------------------------------S-------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------S-----------------------------------------
-------S-----------S-------------S--------------------------S-S-------S---------
-------------------------------------S------------------------------------------
-------S----------S--S-----S--S--S--------S-------------S-----------S-----------
--------------------------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--
-------------------------S----S-------------SS------------S---------------------
--------------------------------S-----------------------------------------------
------------------------SSSSSSSSSSSSSSSSSS--------------------------------------
----S------------------S---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_296
--------------------------------------------------------------------------------
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------------------------------------ACTCGCTGCCTCTGAAGAAC------------------------
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>reverse_1932
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-----------AATGTATGCCCGCTGTGGTT-------------------------------------------------
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>forward_297
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-------------------------------------CTCGCTGCCTCTGAAGAACA-----------------------
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>reverse_2460
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-----------------------------------------------------------CGGGTATGCTCAGAGAGGATG
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>forward_298
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--------------------------------------TCGCTGCCTCTGAAGAACAG----------------------
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>reverse_3096
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-------------------------------------------------------TATTTCATGGACATCAATGATGGCA
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>forward_1190
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--------------------------------------------------CACAGTAAGGCTCGAGTGCA----------
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>reverse_3744
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---------------------------------------------------------------TCCTGAGACAAATTTTG
CACTCC--------------------------------------------------------------------------
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>forward_1462
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--TTCTCCTGTTCAGTTCGCCA----------------------------------------------------------
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>reverse_3972
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---------------------------------------------------TCATCATTTTAAGAATGGTGTGTGCT---
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>forward_2843
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----------------------GGACTCTAATGATGCCCTCGG-------------------------------------
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>reverse_4846
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---------------------------------------------GCTCCAGTCTGGTTCTGACC---------------
--------------------------------------------------------------------------------
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------------------------
