>input_sequence_29494
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-----ATGGCTCTCCAAACCCTAAACCCCGCCACCGTCTCCCGGGCCCCGCTCCCCCTCGCGCGGCGCCACCCGCCGC--
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----------------------------------------------------------------AGCCCTTCCCGCACCT
CCCTCCCCGCCGCCGCGTCGCCGGAGGCGGCGTCCGCCCCCGCGCCGCCGTCGCCGTCGCCGTCTCCGGCGCGGTCAACG
AGGCCAGGAGGCGCCCGCCGCCCCAGGGCGGGGATGGGAAGGAGACGGATCTCGCCACGCTCGGCAACCTCTGCGTCGAC
GTCGTGCTCAGCGTGCCCTGCCTCCCGCCCGCGCAGCGCGACGAGCGCCTGGCCTACATGGAGGGCCTGGCCGCCTCGCC
GCCCGACCAGGTCGAGCCCCAGC--CCGTTCGCTTGTTGCGGTGCGCGAAACCTCTGTATTCGCACTCCACACCCCCAAA
TTGTTCTGCCGCCGTTTATAATTTATTTAGGGTATCCGCGGCTCTCTGCTGCCTAATCGTTATGATTTGTCGTTAGAAAT
GGCATCGGGCGAGAATCGTCAGGGCTGTAGCTTCCTTCTTTTTGTGTGGTTCTAGATGCTCATGCTGCGATTGCATGATT
GATTTACATCTCCTTGCTTTCACTAGTC-----------------------------------------------GATGT
AAGAATGCACGCGTTCTATTTTTTTTTTCTGATTGATGCGTTGCGACCA---GAAATGTGAACATGTGATGAAAATCCTA
GGCATCAGAACTG----------------------AGTTGTCGTTTTATTACGCAACATCCATCTGTAT--GCTGTTCTG
AGTATGTCTTTTATCAACTGAATAGAAATATTGGGAGGCTGGTGGGAACTGCAATTTGGCCTTTGCTGCAGCTAGGCTTG
GGCTTCGCTGCTCCACACTGGGACATGTAGGAGAGGAAGTTTATGGGAAGTTTCTTCTTGATGTGCTCGAGGCCGAGGGA
ATTAGCGTTGTTGGGATGCTTGAAAATGCTGATGTTACTGCATGTCGACAAGCCTATGAGACACTTCTATGCTGGGTTCT
TGTAGATCCATTTCAAAGACATGGATTCTGCAGGTTAGTTCTCATGCACTCCCTATCATATTAAAAATACCTTAGCCTAT
ATTTTTGCCTATGTGATTTATGCG-----TTACTAAATATTTATTGG-----------TTGCAACTTCAGCCGTGCAGAC
TTTAGTAAAGAGCCAGCTTTCAGTTGGATACGTAAACTTCCAGCAGAAACCAAGATAGCCATTCATCACTCTAAAATATT
GTTTAGCAATGGATATGCTTTTGATGAATTTTCCCCTGATGTGATTGCATCTGCTATTGATTGTGCGATTGATGCGGGAA
CATCAGTATTCTTTGATCCTGGGCCTCGTGGAAGATCTCTCTTAAATGGGAACCGGGATGAACAGAGAGCACTGGAGCAC
GCTCTGAGGCTCAGCGATGTTCTCCTTTTGACGTCAGATGAGGTTAGTTCACCCATA-TATAAGCCCTGAAGTTGGATGA
GT------------------------------------ATGCTGCTTGGGCACCCATTTATATTCGAGCTCTCACCCG-T
TTTTATTCAAGTTCTGTGATGATTTGATGATTTGGTG----------------GTGACTGAACTGGCTTTGCATGCCTTC
CTGAAAGTTTGGTGTTACTTCTGTTTACAGAAGAGCTATCATATATATCCAGTGCAATAGATGTCTTGTAGTCACATTCA
TTTGCTTGATGGGCTTCTCTGGTAAAAACAAATCAAATATCATACGTTCCAGATGCCTCTTTTGCGTTCACACCCTTCCA
GA-TTTCTTCATACTTGAGATTCCATGTGTAACTGTC----AATGATCAGTACTATATAGGCCGTGCCTATCTTTCCAAC
GAAAGCGATATTCTAGTTGGCACATTGAATTT--------------GCTTTCTTCTGATAATTAAATG-AAAAATGCAAA
CACTTGTCCTGAAATAAGATTGAGAGGTATCCCAGTGGCAAGCACCAACTGCTTTTCTAAAGATTTTTATTTGCTGAATT
CAACCTTGCTTAGAGGACAGTGAATGAGTGCGCTGTACTTACTCTAGCATTTTGTCGCCTCA-TTCTCACAGATTCCTGT
TTATTGCTTTGACAGGCTGAGTCCCTAACCAACATCGGAAACCCAATTCAGGCAGGGCAAGAATTGCTAAGAAGAGGAAC
CCGAACAAAATGGGTTGTCATCAAAATGGGTTCTAAGGGATCAATCATGATCACCGAAAGTGCTGTTTCATGTGCACCTT
CTTTTAAGGTACTTGCTGTGCTGATGAAGGATCTTTGCGCTCTTGGCACAAGTAATGAATGTTATTTT-TCCTGAATTGT
CATATATTTGGTATTCACCATGCTTTGTATTTCCATAGATCCGCGTTGTGGACACGGTTGGATGCGGAGATAGCTTCACT
GCTGCTATAGCTTTCGGGTTCCTCCACGGGTTGCCGGCGATTAGCACACTAGCACTAGCAAATGCAGTTGGTGCTGCGAC
CGCCACCGGATGTGGAGCAGGTAGGAATGTCGCTCACCTAGATAAAGTACTGAATCTCTTGAGAGAGTCCGATCTCAACG
AGGAAGGAAAAACATGGACCAAGTTGATTGAAGGATTGTCAGCCTGTCCTGAAGTTTCAGTCCTGTCCAAGACGCCAGTC
AATGGTTCCAGTGACCGCTTTGTGAATGTTGTCCCTGTTAGCGGTGTGGTTTCCGACCTTTTGTCGATGCTAGAGGTGGC
ACCGGAGCGAAGCACCGTCCAGGCTTAA----------------------------------------------------
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>chr4D_1_TraesCS4D01G278200
CCCAATGAGAAATGTTAGCTTCACATTTTCTTCGTAGCACCTAGTTAGATCTTTTAGTGTGTTCTGCAGAACGTCAAAAC
AAC-----------------AACAACAACAACAAAAAATAGAACGGACACTCGGTTTTAAACTACAACATAACCCCATTA
TCTTTTTCATGTAAGAAAGAAAAACACCGGGAACACAAACCTCACATGCTCCTCCAATAAGTCCGAGTTGCCATCCTTCA
CCTAACAAAATTAAAGCTATAGGATCAAAAAACACATCCATGTCATCGGCTCAGCGAGGGAGCACCGCCAAG-AATATCT
GCTCAAAAGAGATCGGATACGGACAATCGAAAATGGGACCCCCCCCCCCGCCCCACCCCGTC------------------
--------------------------------------------------------------------------------
------------------------------------------GC------------------------------------
----------------------------CTTCTAATGACAACTTGAAGTATTGTCGCAACGAGGACGGGGAGGACAAGAT
CTGTTCCACGCCAACGACAACGTCATTATCTCACTATCGAACACCGAAGACAAAACACACTAAACTTATTCCTAAAATTT
ATCACTGAAACGAAACATCGGGGGTTCTCCGCCCCATCCTTCGACGTCCTGACAAATGGAGGGAGAGGAAGCACGTGGTC
TCGTCGATGGGGACGGGTAGAACAACGCATCTGTGGGTCATCACCGAAGCATGGGAAGGGAACGATATTCTAACACCCAG
TCGATCACTTTCGTGTGTCTTCATACGTTTACAAATATCATGTACTTTTGCGATTCTTCGCTTTATTCGTAAATCTCCGT
CGGAATTTCATGCTCTTCACTCGTACTA------------------------------------------CAAGTTTTCT
GAGTTGGTGAGGCATATTGCAACTGCTTTTCCTAATCGAATAGATTCGGATAACCAAGAGAGAATTTCCACAC---TGAC
GCAACTTTGAGCCGTTCCATTCGCACGATCGCATC------------------TCTCTCTCAGCTCACCTTCCAATTTTG
CGATTCCCTCCCCGCCCCCATCCCTTCCCCGGCCCGCCTCCTCCTACCTCCGCAGTCCGCACCCCCTCCCCCATTCCCCT
CTCCGATGGCTCTCCAAACCCTAAACCCCGCCACCGTCTCCCGGGCCCCGCTCCCCCTCGCGCGGCGCCACCCGCCGC--
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----------------------------------------------------------------AGCCCTTCCCGCACCT
CCCTCCCCGCCGCCGCGTCGCCGGAGGCGGCGTCCGCCCCCGCGCCGCCGTCGCCGTCGCCGTCTCCGGCGCGGTCAACG
AGGCCAGGAGGCGCCCGCCGCCCCAGGGCGGGGATGGGAAGGAGACGGATCTCGCCACGCTCGGCAACCTCTGCGTCGAC
GTCGTGCTCAGCGTGCCCTGCCTCCCGCCCGCGCAGCGCGACGAGCGCCTGGCCTACATGGAGGGCCTGGCCGCCTCGCC
GCCCGACCAGGTCGAGCCCCAGC--CCGTTCGCTTGTTGCGGTGCGCGAAACCTCTGTATTCGCACTCCACACCCCCAAA
TTGTTCTGCCGCCGTTTATAATTTATTTAGGGTATCCGCGGCTCTCTGCTGCCTAATCGTTATGATTTGTCGTTAGAAAT
GGCATCGGGCGAGAATCGTCAGGGCTGTAGCTTCCTTCTTTTTGTGTGGTTCTAGATGCTCATGCTGCGATTGCATGATT
GATTTACATCTCCTTGCTTTCACTAGTC-----------------------------------------------GATGT
AAGAATGCACGCGTTCTATTTTTTTTTTCTGATTGATGCGTTGCGACCA---GAAATGTGAACATGTGATGAAAATCCTA
GGCATCAGAACTG----------------------AGTTGTCGTTTTATTACGCAACATCCATCTGTAT--GCTGTTCTG
AGTATGTCTTTTATCAACTGAATAGAAATATTGGGAGGCTGGTGGGAACTGCAATTTGGCCTTTGCTGCAGCTAGGCTTG
GGCTTCGCTGCTCCACACTGGGACATGTAGGAGAGGAAGTTTATGGGAAGTTTCTTCTTGATGTGCTCGAGGCCGAGGGA
ATTAGCGTTGTTGGGATGCTTGAAAATGCTGATGTTACTGCATGTCGACAAGCCTATGAGACACTTCTATGCTGGGTTCT
TGTAGATCCATTTCAAAGACATGGATTCTGCAGGTTAGTTCTCATGCACTCCCTATCATATTAAAAATACCTTAGCCTAT
ATTTTTGCCTATGTGATTTATGCG-----TTACTAAATATTTATTGG-----------TTGCAACTTCAGCCGTGCAGAC
TTTAGTAAAGAGCCAGCTTTCAGTTGGATACGTAAACTTCCAGCAGAAACCAAGATAGCCATTCATCACTCTAAAATATT
GTTTAGCAATGGATATGCTTTTGATGAATTTTCCCCTGATGTGATTGCATCTGCTATTGATTGTGCGATTGATGCGGGAA
CATCAGTATTCTTTGATCCTGGGCCTCGTGGAAGATCTCTCTTAAATGGGAACCGGGATGAACAGAGAGCACTGGAGCAC
GCTCTGAGGCTCAGCGATGTTCTCCTTTTGACGTCAGATGAGGTTAGTTCACCCATA-TATAAGCCCTGAAGTTGGATGA
GT------------------------------------ATGCTGCTTGGGCACCCATTTATATTCGAGCTCTCACCCG-T
TTTTATTCAAGTTCTGTGATGATTTGATGATTTGGTG----------------GTGACTGAACTGGCTTTGCATGCCTTC
CTGAAAGTTTGGTGTTACTTCTGTTTACAGAAGAGCTATCATATATATCCAGTGCAATAGATGTCTTGTAGTCACATTCA
TTTGCTTGATGGGCTTCTCTGGTAAAAACAAATCAAATATCATACGTTCCAGATGCCTCTTTTGCGTTCACACCCTTCCA
GA-TTTCTTCATACTTGAGATTCCATGTGTAACTGTC----AATGATCAGTACTATATAGGCCGTGCCTATCTTTCCAAC
GAAAGCGATATTCTAGTTGGCACATTGAATTT--------------GCTTTCTTCTGATAATTAAATG-AAAAATGCAAA
CACTTGTCCTGAAATAAGATTGAGAGGTATCCCAGTGGCAAGCACCAACTGCTTTTCTAAAGATTTTTATTTGCTGAATT
CAACCTTGCTTAGAGGACAGTGAATGAGTGCGCTGTACTTACTCTAGCATTTTGTCGCCTCA-TTCTCACAGATTCCTGT
TTATTGCTTTGACAGGCTGAGTCCCTAACCAACATCGGAAACCCAATTCAGGCAGGGCAAGAATTGCTAAGAAGAGGAAC
CCGAACAAAATGGGTTGTCATCAAAATGGGTTCTAAGGGATCAATCATGATCACCGAAAGTGCTGTTTCATGTGCACCTT
CTTTTAAGGTACTTGCTGTGCTGATGAAGGATCTTTGCGCTCTTGGCACAAGTAATGAATGTTATTTT-TCCTGAATTGT
CATATATTTGGTATTCACCATGCTTTGTATTTCCATAGATCCGCGTTGTGGACACGGTTGGATGCGGAGATAGCTTCACT
GCTGCTATAGCTTTCGGGTTCCTCCACGGGTTGCCGGCGATTAGCACACTAGCACTAGCAAATGCAGTTGGTGCTGCGAC
CGCCACCGGATGTGGAGCAGGTAGGAATGTCGCTCACCTAGATAAAGTACTGAATCTCTTGAGAGAGTCCGATCTCAACG
AGGAAGGAAAAACATGGACCAAGTTGATTGAAGGATTGTCAGCCTGTCCTGAAGTTTCAGTCCTGTCCAAGACGCCAGTC
AATGGTTCCAGTGACCGCTTTGTGAATGTTGTCCCTGTTAGCGGTGTGGTTTCCGACCTTTTGTCGATGCTAGAGGTGGC
ACCGGAGCGAAGCACCGTCCAGGCTTAATGCCATGCTGAGTAGTAGATTGTTGTATT--TTTTTAAATGCGTATAGATTC
TTTTTCATTTTTACTGGTTCATCATGCTGCTCTCAGGTGATGAACGATAGTTTGAAGCCCAGGCTTCTTTGAAAGCCTTT
TTCTGATGAGAATGTGATTTTACCAAGTGGCAAGTGTGGTGCGAAGTCATCTTCCATATGATGATTTGATAAAAAAAAAG
A-----AGGTGATTTTGGTAGTTTCCCCCCTTTCTTCATGTGATCTATTGATAACTGTGCAGTGGCCGTCTATCTTTGCC
CTAACTACGGATTATGTCTCAGTTTGTGATTGTTGAAGTGTGTCGTGCTTATTTTATAATCTGTTGTGGCAAGTTAGCCA
TACAAATAGATTAAAGTGGGTCAAGCAAACACAAAGGGCCTGTTCGGATTCCCTCCCCTCCACAACTCCGCTCTCGGAGC
TGGTGGAGCGGCAGTTTAAAATCGCGGAGTGGGGAAGGAGGTGCTCCATAGATCCTGAGATTTCACGGAGCGGGAGGATT
GCCGAACAGCCCCTAAAATATGATGTGATCGGTGATGACACCATGGTCTGAGATCCTGAGATTGACTATCAAAACGGTGA
TGACGAA--------------CCCTAAATGTAGTGTGTGTTGCCTGCGCGGTCGACTCTTCTGAAGTCTCCTC-------
--------------------------------------------ATTACCTCAGCTCCCAGGATGGCGATCTTCTCTACA
TGTAGTGCAAACTGAAATCCGAGGCCCTGGCGGAAGCATGACTGCTCCACTGTGGCTGTCAACCCGGGGAATAAGTTCGA
AGCGCTCGTGCTATTTTCTGCTTGAAGAATGTTCCGCTTCTCCTCCAGCCTAGTTACATTCCATGTCCCTTCTCCTGTTC
CCCAGTCACCTCACCTCGGTGTGACATGAAAGCATGCATCGTATCCCAGGTTTTGCAAGGTCACAGCGAGATTACTGCCA
TACTTCCCAACTGGAGGCACTGGGCATCATGAAGTTCGGGTGTTGTCGCCGATCGACACG
>chr4B_1
CCCAATGAGAAATGTTAGCTTCACATTTTCTTCGTAGCATCTAGTTAGATCTTTTAGTGTGTTCTGCAGAATGTCAAAA-
-AC-----------------AACAACAAC--CAAAAAATAGAACGGAGACTCAGTCACAAACTACAACATAACCCCATTA
TCTTTTTCATGTAAGAAAGAAAAACGTCGAGAACACAAACCTCACATGCTCCTGCAACAAGTCCGAGTTGCCATCCTT--
CCTAACAAAATTAAAGCTATAGGATCAAAACACACATCCACGTCATCGACTCAGCAAGGTACCACCACCAAGAAATATCT
GCTCAAAAGAGATCGGATACGGACAATCAAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCGTTGC------------------------------------
----------------------------CTTCTAATGACAACTTGAAGTATTGTCGCAACGAGGACTGGGAGGACAAGAT
CCGTTCCACGCCAACGACGACGTCATCATCTCACCATCGAACACCGAAGACAAAACACACTAAACTTATTCCTAA-ATTT
ATCACTGAAACGAAGCATGGGGGGTTCTCCGCCCCATCCTTCGACGTCCTAACAGACGGAGGGGGAGGAGGCACGTGGTC
TCGTCGATGGGGACAGGTAGAACAAAGCCCCTGTGGGTCGTCGCCGAAGCATGGGAAGGGAACGATATTCTAACACCCAG
TCGATCACTTTCGTGTGTCTTCATACGTTTACAAATACCATGCACTTTTGTGATTCTTCGCCTTATTCGTAAATCTTGGT
CCGAATTTCATGGCCTTCACTCGTACTATACAATATTTACAATATTGTTTTCTTCTTCTAGATTTCCATACAAGTTTTCT
GAGTCAGTGAGGCATATTGCAACCGCTTTTCCTAATCGAATAGATTCGGATAACCAAGAGAGAATTTCCACAC---TGAT
GCAACCTTGAGCCGTTCCATTCGCACGATCGCATCTCTCTGTCTCTCTCTCTGTCTCTCTCAGCTCACCTTCCAATTTTG
CGATTCCCTCCCCGCCCCCATCTCTTCCCCGGCCCGCCTCCTCCCTCCCTCCGCAC-----CCCCCTCCCCCATTCCCCT
CTCCGATGGCTCTCCAAACCCTAAACCCCGCCACCGTCTCCCGGGCCCCGTTCCCCCTCGCGCGGCGCCACCCGCCGC--
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----------------------------------------------------------------AGCCCTTCCCGCACCT
CCCTCCCCGCCGCCGCGTCGCCGGCGGCGGCGTCCGACCGCGCGCGGCCGTCGCTGTCGCCGTCTCCGGCGCGGTCAACG
AGGCCAGGAGGCGCCCGCCGCAGGATGGCGGGGAGGGGAAGGAGACGGATCTCGCCACGCTCGGCAACCTCTGCGTCGAC
GTCGTGCTCAGCGTGCCCTGCCTCCCGCCCGCGCAGCGCGAAGAGCGCCTGGCCTACATGGAAGGCCTGGCCGCCTCGCC
GCCCGACCAGGTCGAGCCCCAGC--CCGTTCGCTTGTTGCGGTGCGCGAAACCTCTGTATTCGCACTCCACACCCCCAAA
TTGTTCTGCCGCCGTTTATAATTTAGGGC----ATCTGCGGCTCTCTGCTGCCTAATCGTTATAATTTGTCGTTAGAAAT
GGCATCGGGTGAGAATCGTCAGGGCTGTAGCTTCGTTCTTTTTGTGTGGTTCTAGATGCACATGCTGCGATTGCA----T
GATTTACATCTCCTTGCTTTCACTAGTC-----------------------------------------------GATGT
AAGAATGCACACGTTCTA---TTTTTTTCTGATTGATGCGTTGCGACCA---GAAATGTGAACATGTGATGAAAACCCTA
GGCATCAGAACTG----------------------AGTTGTCGTTTTATTATGCAACATCCATCTGTAT--GCTGTTCTG
AGTATGTCTTTTATCAACTGAATAGAAATATTGGGAGGCTGGTGGGAACTGCAATTTGGCCTTTGCTGCAGCTAGGCTTG
GGCTTCGCTGCTCCACACTGGGACATGTAGGAGAGGAAATTTATGGAAAGTTTCTTCTTGATGTGCTTGAGGCCGAAGGC
ATTAGCGTTGTTGGGATGCTTGAAAATGCTGATGTTACTGCATGTCGACAAGCCTATGAGACGCTTCTATGCTGGGTTCT
TGTAGATCCATTTCAAAGACATGGATTCTGCAGGTTAGTTCTCATGCACTCCCTATCATACTAAAAATACCTTAGCCTAT
ATTCTTGCCTATGTGATTTATGCG-----TTACTAAATATTTATTGG-----------TTGCAACTTCAGCCGTGCAGAC
TTTAGTAAAGAGCCAGCTTTCAGTTGGATACGTAAACTTCCAGCAGAAACCAAGATAGCCATTCATCACTCTAAAATATT
GTTTAGCAATGGATATGCTTTTGATGAATTTTCCCCTGATGTGATTGCATCTGCTATTGATTGTGCGATTGATGCGGGAA
CATCAGTATTCTTTGATCCTGGGCCTCGTGGAAGATCTCTCTTACATGGGAACCGGGATGAACAGAGAGCACTGGAGCAC
GCTCTGAGGCTCAGCGATGTTCTCCTTTTGACGTCAGATGAGGTTAGTTCACCCATA-TATAAGCCCTGAAGTTGGATGA
GTTTGCAGGATTATGTCTGATTTACTATTTGGTTATGTATGCTGCTTGGGCACCCATTTATATTCGAGTTCTCACCCGTT
TTTTATTCAAGTTCTGTGATGATTTGGTGGTTTGGCTGCCTTCATAAACCTTTGTGACTGAACTGGCTTTGCATGCCTTC
CTGAAAGTTTGGTGTTACATCTGTTTACATAAGAGCTATCGTATATATCCAGTGCAATAGATGTCTTGTAGTCACATTCA
TTTGCTTGATGGGTTTCTCTGGTAAAAACGAATCAAATATCGTACGTTCCAGATGCCTTCTTTGCGTTCACACTCTTCCA
GA-TTTCTTCATACCTGTGATTCCATGTGTAACTGTC----AATGATCAGTACTATATAGGCCGTGC-------------
----------TTCTAGTTGGCACATTGAACTTTTCTCTGAATGTTTGCTTTCTTCTGATAACTAAATAAAAAAATGCTAA
CACTTGTCCTGAAATAAGACTGAGAGGTATCCCAGTGGCAAGCACCAACTGCTTTTCTAAAGATTTTTATTTGCTGAATT
CAACCTGGCTTAGAGGACAGTGAATGAGTGCGCTGTACTTATTCTAGCATTTTGTCGCCTCATTTCTCACATATTCCTGT
TTATTGCTTTGACAGGCTGAGTCCCTAACCAACATCGGGAACCCAATTCAGGCAGGGCGAGAATTGCTAAGAAGAGGAAC
CCGAACAAAATGGGTTGTCATCAAAATGGGTTCTAAGGGCTCAATCATGATCACCGAAAGTGCTGTTTCATGTGCACCTT
CTTTTAAGGTACTTGCTGTGCTGACGAAGGATCTTTGTGCTCTTGGCACAAGTAATGAAAGTTATTTT-TCCTGAATTGT
CATATACTTGGTATTCACCATGCTTTGTATTTCCATAGATCCGCGTCGTGGACACGGTTGGATGCGGAGATAGCTTCACT
GCTGCTATAGCTTTCGGGTTCCTCCACGGGTTGCCGGCGATTAGCACACTAGCACTAGCAAATGCAGTTGGTGCTGCGAC
CGCCACCGGATGTGGAGCAGGTAGGAATGTCGCTCACCTAGATAAAGTACTGAATCTCTTGAGAGAGTCCGATATCAACG
AGGAAGGAAAAACATGGACCGAGTTGATTGAAGGATGCTCTGCCTGTCCTGAAGTTTCAGTCCTGTCCAAGACGCCAGTC
AATGGTTCCAGTGACCGCTTTGTGAATGTTGTCCCTGTTAGCGGTGTGGTTTCCGACCTTTTGTCGATGCTAGAGGTGGC
ACCGGAGCGAAGCACCATCCAGGCTTAATGCCATGCTGAGTAGTAGATTGTTGTATT-TTTTTAAAATGCGTATAGATTC
TTTTTTATTTTTACTGGTTCATCATGCTGCTCTCAGGTGATGAACGATTGTTCAAAGCCCAGGCTTCTTTGAAAGCCTTT
TGCTGATGAGAATGTGATTTTACCAAGTGGCAAGTGTGGTGCG-AGTCATCTTCCACATGATGATTTGATAAAAA-----
A-----AGGTGATTTTGGTAGTTTCCCCC-TTTCTTCGTGTGATCTATTGATAACTGTGCAGTGGCCGTCTATCTTTGCC
-TAACTACGG-TTATGTCTCAGTTTGCGATTGTTGAAGTGTGTCGTGCTTATTTTATAATCTGTTGTGGCAAGTTAGCCA
TAGAAATAGATTAAAGCGGGTCAAGCAAACACTAAGGGCCTGTTCGGATTCGCTCCCCTCCACAACTCTGCTCCTGGAGC
TGGTGGAGCGGCAGTTCGAAATCGCGAAGTGGGGAAGGAGGTGCTCCACAGATCCTGAGATTTCACGGAGCGGGAGGATT
GCCTAACAGCCCCTAAAATATAC-GTGATCGATGATGACACCATGGTCTGAGATCCTGAGATTGACTATCAAAACGGTGA
TGACGAAACAGTGATGACGAACCCTAAATGTAGTGTGTGTTGCCTGTGCGGTCGACTCTTCCGAAGTCTCCGC-------
--------------------------------------------ATTACCTCAGCTCCTAGGATGGCGATCTTCTCTACA
TGTAGTGCAAACTGAAATCCGAGGCCCTGGCGGAAGCATGACTGCTCCACTGTGGCTGTCAACCCGGGGAATAAGTTCGA
AGCGCTCGTGCTATTTTCTGCTTGTAGAA--TTCCACTTCTCCTCCAGCCTAGTTACATTCCATGTCCCTTCTCCTGTTC
CCCAGTCACCTCGGTGCAACACA-----GAAGCATGCATCGTATCCCAGGTTTTGCAAGGTCACAGCGAGATTACTGCCA
TACTTCCCAACTGGGGGCACTGGGCATCATGAAGTTCGCGTGTTATCGCCGATCGACAC-
>chr4A_4
---AATGAGAAATGTTAGCTTCACATTTTCTTC-TAGCACCTAGTTAGATGTTTCCTCTAAAAAAAATTAGTTAGATGTT
TTAGTATGCAAAACGTCGAAAACAACAACAACAAAAAATAGAACGGACACTCAGTCTTAACCTACAATATAACCCCATTA
TCCTTTTCATGTAAAAAAAGAAAACATAGGGAACACAAACCTCACATGCTCCTGCAACAAGTTCGAGTTGCCATCCTTCA
CCTAACAAAATTAAAAGCTGTAGGATC-AAGACACATCCACGTCCTCGGCTCAGCAAGGTAACACCGGCAAGAAATATCT
GCTCAAAAGAGATCGGATACGAACAATAAAAAATGGGGACACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCAATGACAACATGAAGTATCGTCGGAACCAAGACGAGAAGGACAAGAT
CTGTTCCACGCCAACGACAACGTCATCATCTCACCATCAAACACCAAAGACAACACACACTAAACTTATTCCTAA-ATTT
ACCACTAAAACGAAGCATCGGGGGTTCTTCGCCCCACCCTTCGACGTCGTGACAGATGGAGGCAGAAGAGGCACATGGTC
TCGTCGACGGGGGCGGGTAGAACGGCACCCCTGTGGGTCATCGCCGAAGCATGGGAAGGGAATGACATTCGAACACCCAT
TCGATCACTTTCTTGT--CTTCACACGTTTACAAATATCATATACTTTTGCGATCCTTCGCTTTATTCGTAAATTTCCGT
CAGAATTTAATGCTCTTCACTCCACC------------ACAATTTTGTTTTCTTCTTCCACCTG----TACAAGTTTTCC
GAGTTGCTGAGGAATATTGCAACTGCTTTCCCTAATCGAATAGATTCGGATAACCAAGAGAGAATTCCCACACCGATGAT
GCAACTTTGAGCCGTTCCATTCACGCGATCGCATCC------------------CTCTCTCAGCTCACCTTCCAATTTTG
CGATTCCCTCCCCGCCCCCATCTCCTCCCCGGCCCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCCTTCCCGCACCT
CCCTCCCCGCCGCCGCGTCGCCGGCGGGGGCGTCCGGCCGCGCGCCGCCGTCGCCGC------------CGCGGTCAACG
AGGCCAGGAGGCGCCCGCCGCAGGAGGGCGGGGAGGCGAAGCAGACGGATCTCGCCACGCTCGGCAACCTCTGCGTCGAC
GTCGTGCTCAGCGTGCCCTGCCTCCCGCCCGCGCACCGCGACGAGCGCCTGGCCTACATGGAGGGCCTCGCCGCCTCGCC
GCCCGACCAGGTCGAGCCCCAGCCCCCGTTCGCTTGTTGCGGTGCGGGAATCCTCTGTATTCGC---------CCCCTAA
CTGTTCCGCGGTAGTTGATACTTAATAGTCTAGGGCTCA-----TCTGCTGATCAGTCGTTATGATTTGCCGTTAGAAAT
GCTATCGGGCGAGAATTGTCATGGCTTTACCTTCCGTTACAATTTAGGGT-----ATGCTCATGCTGCCATCGCT----A
AATTTTACAGCCTTCTTGCTTAATTATATCTGCCTGTAAACTGTGTGGATGGAGGGGAGTGGGGGCTTTTACTGAGATAT
AAAACTGTACACATACTA---TCTTTGCCTGATTATTGTTGTATTGTGAAGGGAAATGTGAGCGTGCGATGAAAATTGTA
GGTGTCAGAACTGCTGAGGTTCATGATTCATCAGTAGTTGTTGTTTTATTATGCAACATCCATTCGTTTTAGCTGTTCTG
ATTATGTCTTT-ATCAACTGAACAGAAATATTGGGAGGCTGGTGGGAACTGCAACTTGGCATTCGCTGCAGCTAGGCTGG
GGCTTCGCTGCTCCACACTGGGGCATGTTGGAGAGGAGGTTTATGGAAAGTTTCTTCTTGATGTGCTCGAGGCAGAAGGA
ATTAGTGTTGTCGGGATGCTTGAAAATGCTGATGTTACTGCATGTCGACATGCCTATGAGACGCTTCTATGCTGGGTTCT
TGTAGATCCATTCCAGAGGCATGGATTCTGCAGGTCAGTTCTCATGCACCCCCTATTATATT--AAATAGATTAGCCAAT
ATTCTTGCTCGTATGATTTACGTGTTTTTTTACTTCATATTTACTGGTCTTTCCTTCTTTGCAAATTCAGCCGTGCAGAC
TTTAGTAAAGAGCCAGCTTTCAGTTGGATACGTAAACTTCCAGCAGAAACCAAGATAGCCATTCATCACTCTAAAATATT
GTTTAGCAATGGATATGCTTTTGATGAATTTTCCCCTGATGTGATCGCATCTGCTATTGATTGTGCGATTGATGCGGGAA
CATCAGTATTCTTTGATCCTGGGCCTCGTGGAAGGTCTCTCTTACATGGGAACCTGGATGAACAGAGAGCGCTTGAGCAC
GCTCTGAGGCTCAGCGATGTTCTCCTTTTGACGGCAGATGAGGTTAGTTCACCCATATTATAAGCCCTGAAGTTGGATGG
GTTTGCAGGATTATGGCTGATTTACTATTTGGTTATGTATGCTGCTTGTGCACACGGTTATATCCGAGTTATCACCCATT
TTATATTCAAGTTCTGTGCTGATTTG--------GCTGCCTTCATAAACCTTTATCACTGAAGCAGCTTTGCATGCCTTC
CTGAAAGTT-GGTGTTACTTCTGTTTACAGAAGAGCGATCATATATATCCAGCGCAATAGATATCTTGTAGTCACATTCA
TTTGCTTGATGGACTTCTCTGGTAAAAACAAATCAAACAGCATATGTTCCAGATTCCTTTTTGCGTT---CACTCTTCCA
GATTGTCTTCATACATGTGATTCCATGTGTAACTGTC----AATGATCAGTACTATATGGGTCGTGCCTATCTTTCCAAC
GAAAACGATTTTCTATTTGGCACATTGAACTTTTCTCTGAATATTTGCC-TTTTCCAATAATTAAATA-AAATGCA-AAA
CACTTATCCTGAAATAAGATTGAGAGATACTCCACTGGCAAACATCAACTGCTTTTCTGAAGAATTTTATTTGCTGAATT
TAACCTGGCTTAGAGGACAGTGCCTGAGTGTGCTGTACTTATTCTAGCATTTTCTCGCCTCATTTCTCACCACTTCCTGT
TTATTGCTTTGACAGGCTGAGTCCCTAACCAACATCGGAAACCCAATTCAGGCAGGGCAAGAATTGCTAAGAAGAGGAAC
CCGGACAAAATGGGTTGTCATCAAAATGGGTTCTAAGGGATCAATCCTGATCACCGAAAGCGCTGTTTCATGTGCACCTT
CTTTTAAGGTACTTGCTGTGCTGACGAAGGATCTTTGTACTCTTGGCACAAGTAATGGAAGTTATTTTTTCCTGAATTGT
CATATTTTTGGTATTCACCATGCTTTGTATTTCCATAGATCCGCGTTGTGGACACGGTTGGATGCGGAGATAGCTTCACT
GCTGCTATAGCTTTCGGGTTCCTCCACGGCTTGTCGGCGATTAGCACACTAGTACTAGCAAATGCAGTCGGTGCTGCGAC
CGCCACTGGATGTGGAGCAGGCAGGAATGTCGCTCACCTAGATAAAGTACTGAATCTCTTGAGAGAATCCGATCTCAACG
AGGAAGGAAAAACATGGACTGAGTTGGTTGAAGGATGCTCAGTCTGTCCTGAAGTTTCAGTCCTGTCCAAGACGCCAGTC
AATGGTTCCAGTGAGCGCTTTGTGAATGTTGTCCCTGTTAGCGGTGTGGTTTCCGACCTTTTGTCGATGCTAGAGGTGGC
ACCGGAGCGAAGCACCGTCCAGGCTTGATGCCATGCTGAGTAGTAGATTGTTGTATTTTTTTTTAAATCCGTATAGATTC
TTTTTTATTTTTACTGGTTCATCATGCTGCTCTCAGGTGATGAACGATAGTTCGAAGCCCAGGCTTCTTTGAAAGCCTTT
TGTTGATGAGAATGTGATTTTACCAAGTGGCAAGTGTGGTGCGAAGTCATCTTCCATATGATGATTTGATAAAAA-----
AAAGAGAGGTGATTTTGGTAGTTTCCCCC-TTTCTTCGTGTGATCTTTTGATAACTGTGCAGTGGCCGTCTATCTTTGCC
CTAACTACGG-TTATGTCTCAGTTAC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GATGACACCATGGACTGAGATCCTGAGATTGACTATCAAA-------
-------ACAGTGATGACGAACCCTAAATGCAGTGTGTGCTGCCTGCGCTGTCGACTCGTCTGAAGCTTGCCCCCCTTGT
CGCGGTGTGACGATGAGGGGAACAAGATGAACTTCAACTGGGTGATTACCTCAGCTCCCAGGATGGCGATCTTCCCTACA
TGTAGTGCAAACTGAAATCCGAGGCCCTGGTGGAAGCATGACTGCTCCACTGTGGCTGTCAACCCGGGGAACAAGTTCGA
AGCGCTCGTGCTATTTTCTGCTCCAAGGATGTTCCACTTCTCCTCCAGCCTAGTCACATTCCATGTCCCTTCTCCTGTTC
CCCAGTCGCCTCGTCGCGACACA-----AAAGCATGCATCGTATCCCAGGTTTTGCAAGGCCACAGAGAGATTACTGCCG
TACTTCCCAACTGGAGGCACTAGGCATCATGAAGTTCGCGTGTTGTCGCTGATCGACAC-
>chr3A_2632
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--------ATGGGCTTCTCTGGTAAAAACAAACCAAACAACATGTGTTCCAGATTCCTTTTTGAGTT---CACTCTTCCA
GATTTTCTTCATCCATGTGATTCCATGTGTAACTGTCTGTCAATGATCAGTACTATATGGTCCGTGCCTATCTTTCCAAT
GAAAACGATATTCTATTTAGCACATTGAACTTTTCTCTTAATATTTGCA-TTTTCCAATAATTAAATG-AAATGCA-AAA
CACTTATCCTGAAATAGGATTGAGAGGCACTCCACTGGCAAACATCAACTGCTTTTGGGAAGATTTTCATTTGCTGAATT
CAACCTGGCTTAGAGGACAGTGACTGAGTGTGCTGTACTTATTCTAGCATTTTATCGCCTCATTTCTCACATATTCTTGT
TTATTGCTTTGACAGGCTGAGTCACTAATGAACATCGGAAACCCAATTCAGGCAGGGCAAGAGTTGCTAAGAAGAGGAAC
CCGAACTAAATGGGTTGTGATCAAAATGGGTTCCAAGGGATCGACCATGATCACTGAAAGTGCTGTTTCTTGTGCACCTT
CTTTCAAGGTACTTGTTGTGCTGATAAAGGATCTTTGCGATCTCAGCAAAACTAATGAATGTTATTTT-TCCTGAATTGT
CACATTTT------------------------------------------------------------------------
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------------------------------------------------------------
>SNPs
-----------------------------------------------------------------------S-------S
S---------------------------------------------------S--S------------------------
--------------------------S--------------------------S---S----------------------
------------------------------S---------S--------------S---S-S------------------
----------------------------S--------SS-S-S--SSSSSSSSSSSSSSSSS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------S-------S----------------------------------------S----
--------------S---------------------------------------S--------------S----------
----------------------------SS------------S-------------------------------------
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-S------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
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----------------------S---------------------SS--SS-SSSSSSSSSS-------------------
--------------------------------------------------S-----------------------------
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------------------------S-----------S--S----------------------------------------
---------------------SSS----------S---------------------------------------------
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--------------------------SSSSSSS---S-------------------------------------------
---------------------------------------------------------------------------SSSS-
--------------------------------------------------------------------------------
----------S-------SSS-----------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
----------------------------------------------S-----------------------------S---
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------S--S-----SS-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S--------------S------
--------------S--S--------------------------------------------------------------
----S------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
------S----------------------------------S-----------------------------S--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------SS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S----------------------------------------------S---------------------------
-S-------------------------------------------------------------------------SSSSS
-----------------------------S-------S------------------------------------------
----------S---------------S-----------------------------------------------------
--S-------------S---------------S------------------S----------------S----SS-----
----------------SS--------S---------------------S-------------------------------
---S-----------------SSS-------S------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------SS-S--SSSSSSSSSS----------------------------------------------------
--------------------------------------S--------------------S
>forward_830
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----------GGACGGGTAGAACAACGCAT--------------------------------------------------
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>reverse_3317
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------------------------------------GGTGACTGAACTGGCTTTGC------------------------
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------------------------------------------------------------
>forward_1256
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-------------------------------------CTCCTCCTACCTCCGCAGT------------------------
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>reverse_3499
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----------------------------------------------------------CTTTTGCGTTCACACCCTTCC-
--------------------------------------------------------------------------------
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------------------------------------------------------------
>forward_1257
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--------------------------------------TCCTCCTACCTCCGCAGTC-----------------------
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>reverse_3802
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-----------------------------------------CTCTAGCATTTTGTCGCCTCA------------------
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>forward_3514
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------------------------------------------------------GCCTCTTTTGCGTTCACACC------
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>reverse_4913
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--------------------------------AAAGGGCCTGTTCGGATTCC----------------------------
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------------------------------------------------------------
