>input_sequence_29438
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-------------------------------------------------------------ATGTGGTGGGAGGAGGTGA
GGAGGAGGGAACGCGGGGAGCTGCGCGCGCGGCGCTTCGAGGCCCTCGCCCGCTCGCGCCGCGCCGCCTCGCTCGCGCTC
TCCAACCGCAAGGAGATCGCGACCCCGCACCTCGGCGCCGTCAACTCCCTCCAGGTCCCCTTCTTCCCCGTCGCTCCCCC
AATCGCTCCATATTACTCCCTCCCCGCCCGCCGCCCCCGCATCAGTTGCGCGGAG-------ATCAGCAGTACTATTAAT
TTTGCGTGTTAATCCGTCGAGAAACTGCGCCTAGCGAGGTCGAACTTCTGTTCGG-TGCGTGAGTCGACGTTGCTGGCGT
TCGTAATTTGACAATATGGCCAGGTTGATTTGACAGAGGGGAGGTACCTGCTCTCGGGGGCGTCGGACGGGTCGGCCGCC
GTCTTCGATCTGAAGGACGCGACGGAGTACGAGGCCGGGTTCATCGCCAAGCACAGGAGCATTCTGCTCGTGGACAGGCA
GCATCAGCATGGCCACAAGTTCACCGTCTCCAAGGCCATCTGGTATCCTGTGGACACCGGGCTGTTCGTCACGGCGTCCT
TTGATAACTATGTCAAAGTGTGGGATACCAATTCCACTCAAGTATGTGTTATTGTGCTTCA------CCAATCCTGACCT
TAACATTTTGCCCCGTTGAGGTGTTGATTCCGATGTCCTGGTCATTCTGGGATTGGTTTTCTTTT-CCTAGGTGGTCATG
GATTTTAAGATGCCCGGAAAAGTGTACAGTGCTGCAATGTCTCCAATTGCAACAACGCATATGCTCATCGCTACCGGAAG
CGCAGACGTTCAGATCCGTTTGTGTGATATTGCTTCCGGAGCCTTTACTCACACGTTGTCCGGTCATCATGGTTAGTCCC
TTCCTGCTGGTGTGATGATGAAACACCATTCTTGTTTTGTTTTT-ATGCTTATCCTCGTCGATCATCTCAGATGGTATCA
TGTCTTTGGAGTGGTCTACCTCAAGCGAGTGGATCCTAATGAGTGGTGGCTGCGACGGGGCGATACGTTTTTGGGACATA
AGACGAGCTGGATGCTTCCTTATCCTTGATCAGTTACGGTCTCAGCTAGGAAGACGGCCTCCCATTATTGATAGCACCAC
GGACAACGTATGCTTGCTGTCACCCTTTACTTTTTATCTGCTTGTGGGTTTGGTTATTTCTTCAGAATATATTTGCTCGC
AGGGCTAATACAGAACTGCTTGCCATTATTCTGGCTACTATTCCAAAACTGTTAGGTCTCCAAGTAGGAGTGGATTTTTC
CCGCAAGAAAAGGGTACAAGCGGATATCTGGTATATATTCATGTCCTAGGCCTATGTCATTGTTTTAGCATCATCATATA
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----------------------------------------------TAGATGGTATGGATCAGTGTAGTGCTCTAGTTCT
TAAAAGATGGGATCTGCATTTCATTGGGAGATAATCCATGCTGCTCTACACAAGGTTCCTTCCTGCTGTTTATTGCTGTG
TCCTGAAAAAATTGTTGATGTCATGCAAGTACAATGGGAGATAATTAATATTATTAGGTTCTTGTGTTGTTCATTGTTGT
GTCCGAAAGATGGTTGATGACGTGCAAGTACATCTGCTAGTTGACATCTTCAATGCATATATATTTTTCGTCTTAAGCAG
CATCAGAAGAACTTAGGACGTTCATCTTCATCAAAGAGTTACTCGGTTCAGCAGAGGACAGGCAATCATAAGAAGCAGTC
CAAAGGACTACGCAAAAGTCTAACCATGGTACGTGGACATACGCAACAGAAAGTGCATCCCGGTATGTCATCCAGTCAAA
ATCGTAAAACAGCTCATTATGGTGCTGTTACAGGATTAAGAACAACAACAGATGGGATGCACCTTCTTAGCTCAGGTTGA
GTTAATTTCTTCTCTATCGGTTATCTGCTGCTATGCCTGAAATTGGCATGCAGTGCAACAATGATAGTTTAAGCTTAAGC
CTGTTATTAAGAAGAGGTTATCGTTTCTCTTCAGGATCTGATTCTCGTTTAAGACTCTGGGATATCGATTCAGGCTGCAA
TACTTTGGTCAATTTTGAAGCCATGCGATTGCAAACTAGCAAGCCACTGCAATTAGCTGTCACTGATGATCCATCACTTG
TTTTCATTCCATGCATGTCAAGCATCAAGGTATGCTGTTGCTTTTCCAGCTTTATGTCTTCATTCTGCATTTTGAAGTTC
ACGTCTAAGTATTATAATTGCTTATAGGCATACAATACATGGTCTGGTACGACATTTCAAACATTCCGTGGGCATTATGA
CCATGTAAATTGCTGCTACTATAACTCACAAGACCAAGTAAGTTTTCCCTCTATTGTCCTCTGTTAAGCTTTAGTATTTC
AACGTGTATTCCATTCCTAAATATTCGAGAATGCAGGAACTCTATACTGGTAGCAATGATCGACAAATTCTTGTGTGGTC
TCCATCGACTCCTGCTTTGACTGAAATGGTATAAAATCTATCTATTGACACCATGCAGTTTTTTTTTTTTTGCATTTTTC
TAGCGAGTTAATATTCTCCCAATGGGAGTTTGAGAAGGAATTGAGTACAAAATTTTCATGTAAATTTGATGATTTGATGC
TGCTAAATATCTGCAGGAAGACGATGACAAGCGGCAAGAGGGTTTTGCAGCTGATGAGGATAACTGGAGTGACTGA----
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----------------------------------------------
>chr3D_1_TraesCS3D01G364100
TCCCAAGACCTCTGGATTTGACAAACCCACAAAAAAATATCCATCATTTGGGGTTATAATTATATTTTTCATGGAATTAA
ATACATTTAAATTAATATGTAGGGTTGAAGTGTAAGTGTGTGATAAACTATTACAGAAATTATAAAATAATTGTTGGAGC
TACCCAATATTAGTGGAGGCTATCTCTAGAT-TTCAAGAGATTTCACCATGCTAAAGTCCCTCAATTTAAAA--TATAAC
AAAATATATTATATTCATATATTATTAAATTGCATTTTAATTAGGTTTTGCATTCAAATTGTACTGAGGGTTTAATTTGA
CCTCATTTCAAGTTTAAAGCATGATGACATGATGGCATGATGTCGTGATGATGAAAAAGAAAATATAGTAATCAAATCTA
AATCTGTCATTACTCCAGATTGTTATAGTCGACCCCATTGAAATGGAATCTTACCCCGAGATTCAGGCGACAAGGTAA--
-GGGAAGGATTGGGCTACAAATCCAACAAATCTTCTCGTTTCATGTTGCTCTCCTCGAGGACGTTGATCCATTGCATCAT
GGTGAACTTGATATCCTTCCTTCACGATCGTTGTTATGGGCCCTTTGCTGAACTTGCTATCCTTCCATCGTGGGTGCGGG
TGTTGCGATTCTAGAGAATTTTAACTTCTAACCTCGTGAAATTGTTATGTGACGACTTTGATTTG--CAAAATCATTCGG
AGTCTCTTGTTGAATATTAACTCGTTCAATCATCATCTTACTCTCAAGGTTCTCATAAAAATGTTTTTGATTAGTAGAG-
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------------------------------------------------------------------------TCGATTCA
TCACATCCATTGAAGGAGTACACGTGTACGACACTGACATCTGGATATAACCGCTGAATTTAATGGAAGCTTGGAAGGCC
AACAATTGAGTCCCCCTACCTCACCGGTCA------GCTCAGCAGCCGCCCGATTCGCGCCGCCCTC-------------
-CCCGACTTCCGTCGCCGTTCGCCGCCGCAGAGCGCATACACGGCGGCGCGCCCTGAGTGGATGTGGTGGGAGGAGGTGA
GGAGGAGGGAACGCGGGGAGCTGCGCGCGCGGCGCTTCGAGGCCCTCGCCCGCTCGCGCCGCGCCGCCTCGCTCGCGCTC
TCCAACCGCAAGGAGATCGCGACCCCGCACCTCGGCGCCGTCAACTCCCTCCAGGTCCCCTTCTTCCCCGTCGCTCCCCC
AATCGCTCCATATTACTCCCTCCCCGCCCGCCGCCCCCGCATCAGTTGCGCGGAG-------ATCAGCAGTACTATTAAT
TTTGCGTGTTAATCCGTCGAGAAACTGCGCCTAGCGAGGTCGAACTTCTGTTCGG-TGCGTGAGTCGACGTTGCTGGCGT
TCGTAATTTGACAATATGGCCAGGTTGATTTGACAGAGGGGAGGTACCTGCTCTCGGGGGCGTCGGACGGGTCGGCCGCC
GTCTTCGATCTGAAGGACGCGACGGAGTACGAGGCCGGGTTCATCGCCAAGCACAGGAGCATTCTGCTCGTGGACAGGCA
GCATCAGCATGGCCACAAGTTCACCGTCTCCAAGGCCATCTGGTATCCTGTGGACACCGGGCTGTTCGTCACGGCGTCCT
TTGATAACTATGTCAAAGTGTGGGATACCAATTCCACTCAAGTATGTGTTATTGTGCTTCA------CCAATCCTGACCT
TAACATTTTGCCCCGTTGAGGTGTTGATTCCGATGTCCTGGTCATTCTGGGATTGGTTTTCTTTT-CCTAGGTGGTCATG
GATTTTAAGATGCCCGGAAAAGTGTACAGTGCTGCAATGTCTCCAATTGCAACAACGCATATGCTCATCGCTACCGGAAG
CGCAGACGTTCAGATCCGTTTGTGTGATATTGCTTCCGGAGCCTTTACTCACACGTTGTCCGGTCATCATGGTTAGTCCC
TTCCTGCTGGTGTGATGATGAAACACCATTCTTGTTTTGTTTTT-ATGCTTATCCTCGTCGATCATCTCAGATGGTATCA
TGTCTTTGGAGTGGTCTACCTCAAGCGAGTGGATCCTAATGAGTGGTGGCTGCGACGGGGCGATACGTTTTTGGGACATA
AGACGAGCTGGATGCTTCCTTATCCTTGATCAGTTACGGTCTCAGCTAGGAAGACGGCCTCCCATTATTGATAGCACCAC
GGACAACGTATGCTTGCTGTCACCCTTTACTTTTTATCTGCTTGTGGGTTTGGTTATTTCTTCAGAATATATTTGCTCGC
AGGGCTAATACAGAACTGCTTGCCATTATTCTGGCTACTATTCCAAAACTGTTAGGTCTCCAAGTAGGAGTGGATTTTTC
CCGCAAGAAAAGGGTACAAGCGGATATCTGGTATATATTCATGTCCTAGGCCTATGTCATTGTTTTAGCATCATCATATA
--------------------------------------------------------------------------------
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----------------------------------------------TAGATGGTATGGATCAGTGTAGTGCTCTAGTTCT
TAAAAGATGGGATCTGCATTTCATTGGGAGATAATCCATGCTGCTCTACACAAGGTTCCTTCCTGCTGTTTATTGCTGTG
TCCTGAAAAAATTGTTGATGTCATGCAAGTACAATGGGAGATAATTAATATTATTAGGTTCTTGTGTTGTTCATTGTTGT
GTCCGAAAGATGGTTGATGACGTGCAAGTACATCTGCTAGTTGACATCTTCAATGCATATATATTTTTCGTCTTAAGCAG
CATCAGAAGAACTTAGGACGTTCATCTTCATCAAAGAGTTACTCGGTTCAGCAGAGGACAGGCAATCATAAGAAGCAGTC
CAAAGGACTACGCAAAAGTCTAACCATGGTACGTGGACATACGCAACAGAAAGTGCATCCCGGTATGTCATCCAGTCAAA
ATCGTAAAACAGCTCATTATGGTGCTGTTACAGGATTAAGAACAACAACAGATGGGATGCACCTTCTTAGCTCAGGTTGA
GTTAATTTCTTCTCTATCGGTTATCTGCTGCTATGCCTGAAATTGGCATGCAGTGCAACAATGATAGTTTAAGCTTAAGC
CTGTTATTAAGAAGAGGTTATCGTTTCTCTTCAGGATCTGATTCTCGTTTAAGACTCTGGGATATCGATTCAGGCTGCAA
TACTTTGGTCAATTTTGAAGCCATGCGATTGCAAACTAGCAAGCCACTGCAATTAGCTGTCACTGATGATCCATCACTTG
TTTTCATTCCATGCATGTCAAGCATCAAGGTATGCTGTTGCTTTTCCAGCTTTATGTCTTCATTCTGCATTTTGAAGTTC
ACGTCTAAGTATTATAATTGCTTATAGGCATACAATACATGGTCTGGTACGACATTTCAAACATTCCGTGGGCATTATGA
CCATGTAAATTGCTGCTACTATAACTCACAAGACCAAGTAAGTTTTCCCTCTATTGTCCTCTGTTAAGCTTTAGTATTTC
AACGTGTATTCCATTCCTAAATATTCGAGAATGCAGGAACTCTATACTGGTAGCAATGATCGACAAATTCTTGTGTGGTC
TCCATCGACTCCTGCTTTGACTGAAATGGTATAAAATCTATCTATTGACACCATGCAGTTTTTTTTTTTTTGCATTTTTC
TAGCGAGTTAATATTCTCCCAATGGGAGTTTGAGAAGGAATTGAGTACAAAATTTTCATGTAAATTTGATGATTTGATGC
TGCTAAATATCTGCAGGAAGACGATGACAAGCGGCAAGAGGGTTTTGCAGCTGATGAGGATAACTGGAGTGACTGAAG--
TTGTGAGTTTTTTAAGGGAGATAACTTGTGAGTTGATCA--TGTGTATATACGAGGTTACTAACAATATTGACACGAGTG
ATGCCGAAATAAAGTCAGGGTTCTTGTTAGGTATTACACGAACCAGTAATTACTTGTGTTTGGCTACTACTCC-------
--------------------------------------------------------------------------------
-------------------------------------GAGAGGATGTTGTACATTAGGATTTGAATTTTTTGTAGTTCAT
TGAAACTTATGTATTCAGGCATCATAATAAAAAGAGG--AGTATTATGTATGGTTCACCCAACTGCTATTTCTGTACC--
TTGTTCCTGATAAAGCATTGAACATGTTTTATGCCTTCTCTGATGCTAAAGTTTCTGAAGGGAACAACAATGAAATT--T
ATAAAACCAAATTACTATTGCTATTGGTCT-GTTA-----------------------------------TAAACAGGGT
CCCCAGCGGCAGAAGACACATGAGTTCCACTGTTAGGTTTACACGAAGCAACATATCATGCAACTTTTGATCAAGAGCAA
TGGCTCATGATTTCCATTATTCATCTATTACATATTGGCGCGACATTGTTCAGTTTGTCAATGTTACAACTGGCACG---
-----------ACATTGCTGAATTTGTGTGACTGCGTAAACAATAGATGTACATATGTTACAGCCTTACAGGA---AAAA
AAAACTCAGTTACAACTTGCACCAGGTTCAAAGAAGTTGCGGGCGCCTAGCCCGCACTTATTCCAGATCGATGCCCCTTA
TTGTGTTGCTGAGCTGCTAATATTCTCAGAACTATGATTTGC--------------------------------------
---------------------------------------------------------------------TGAGCCCAAGA
TATGCAGGACCTGGTAGCTCATATTGCCTGAACTTGAGTTCCTAAACTACAAGGATCTGTTGGAGTTCCTCAGATACACA
GCTTTGTTAT----------------------------------------------------------------------
---------------------------------------------GTATAACTCTGCGTAACTGGAAATCCGCAATGGCA
ACCCGTTGAAAGGTTGAATCGGACGAACATACCATATATTGCTGCAAGTAACAGCAGATGCTGCGACAGCTTATTGTGTA
GGTGGATAC-CACGGAGGACCCTGGTTTGCGGCAAACACTCCCCAA
>chr3B_149
--------------------------------------------------------------------------------
--------------------------------------------------------------------AATTGTGGGAGC
TTCTCAATATTAGTGGAAGGCTATATCTATGGTTCAAGAGATTTCATCATGCTAAAGTCCCTCAATTTAAAAAATATATA
AAAATATATTC-------ATATTATCAAATTGTATTTTAATTAGGTTTTGCATTTAAATAACACTGGGAGTTTAATTTGA
CCTA--TTCAAGTTTAAGGCATGATGA------------------------TGAAAAAGAAACTAAC--AATCAAATCTA
AATCTACACTTACTCAGGGTTGTTACAATCGACCACACTCAAATGAAATCTTGCCCTGAGATTTAGGCGATAAGGTAAGA
GGGGAAGGATTGGGCTACAAATCCAACAAATCTTCTCGTTTCATGTTGCTCTCCTCGAGGAGGTCAAACCATTGCATCAT
GGTGAACTTGATATCCTTCCTTCGCGATTGTTGTTACGGGCCTTTTGCTGAACTTGCTACCCTTCCTACGCGG--GCGGG
GGCTGCAATTCTAGAGAATGA-AACTTCTAGGTTCGGGGGATTGTTATGCGACGACTTTGAGATTCACAAAATCACCGGG
AGTCTCTTGTTGAGTATTAACTCGTTCAATCACCATCATACTCGCAGGGTTCTCATAAAAATGTTTTTGATTAGATAGTA
TCTACACAAAAATATAAGATCATTTGTCACACCTATTTTTCAT-ATGTCCTTTTAAAGAAGTAAGTATGCAAGACAGCTA
CCAACAAAAGCACATGTGATTATCAGTAAAGAACACTCTTTTTCAAGGGAGTAAAGAACACATTTAATCCATATAATTTT
TT------------------------------------------------------------------------------
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---------------------------------------------------------------------------TTTCA
TCACATCATAA-AAGGAGTACACGTGTACAGCACTGACATCTGGATATAACCGCTGGATTTAATGGAAGCTTGGAAGGCC
AACAATTGAGTCCCCCGACCTCACCGGTCAGCTCAGGCTCAGCAGCCGCCCGATTCGCGCCGCCCTC-------------
--CCGACTTCCGTCGCCGTTCGCCGCCGCAGAGCGCATACACCGCGGCGCGCCCCGAGTGGATGTGGTGGGAGGAGGTGA
GGAGGAGGGAACGCGGGGAGCTGCGCGCCCGGCGCTTCGAGGCCCTCGCCCGCTCGCGCCGCGCCGCCTCGCTCGCGCTC
TCCAACCGCAAGGAAATCACGACCCCGCACCTCGGCGCCGTCAACTCCCTCCAGGTCCTCTTCTCCCACATAGCTCCCCC
AATCCCCCC-TGTCACTGCCT-CCCGCCCGCCGCCCCTGCATCAGCTGCGCGTAGCGCACAGATCAGCAGTACTATTAAT
TTTGCGTGTTAATCCGTCGAGAAACTGTGCCTAGCGAGATTGAAATTCTGTGCGG-TGCGTGAATCGACGTTGCTGGCGT
TCGTAATTTGACAATATGGCCAGGTTGATTTGACAGAGGGGAGGTACCTGCTCTCGGGGGCGTCGGACGGGTCGGCCGCC
GTCTTCGATTTGAAGGACGCGACGGAATACGAGGCCGGGTTCATAGCCAAGCACAGGAGCATTCTGCTTGTGGACAAGCA
GCATCAGCATGGCCACAAGTTCACCGTCTCCAAGGCCATCTGGTATCCTGTGGACACCGGGCTGTTCGTCACGGCCTCCT
TCGATAACTATGTCAAAGTGTGGGATACCAATTCGACTCAAGTATGTGTTGTTGCGCTTTGCTTTGTCCAATCCTGATCT
TAACATTTTGCCCCGTTGAGGTGTTGATTCCGATGTTCTGGTCGTTCTGGGATTGATTTTTTTTT-CCTAGATGGTCATG
GATTTTAAGATGCCCGGAAAAGTGTACAGTGCTGCAATGTCTCCGATTGCAACAACGCATATGCTCATCGCTACCGGAAG
CGCAGACGTTCAGGTCCGTTTGTGTGATATTGCTTCCGGGGCCTTTACTCACACGTTGTCCGGTCATCTTGGTTAGTCCC
TTCCTGCTAGTGTGATGATGAAGCAGCATTCTTGTTTTGT-TTTTATGCTTATCCTCTTCGATCATCTCAGATGGTATCA
TGTCTTTGGAGTGGTCTACCTCAAGCGAGTGGATCCTAATGAGTGGTGGCTGCGACGGGGCGATACGTTTTTGGGACATA
AGACGAGCTGGATGCTTCCTTGTCCTTGATCAGTTACGGTCTCAGCTAGGAAGACGGCCTCCCATTCTTGATGGCACCAC
CGACAACGTATGCTTGCCATCACCCTTTACTTTTTATCTGCTTCTGGGTTTGGTTATTTCTTCAGAATATATTTGCTCGC
AGGGCTAATACAGAACTGCTTGCTATTATTCTGGCTACTGTTCCAAAACTGTTAGGTCTCCAAGTAGGAGTGGATTTTTC
CCGCAAGAAAAGGGTACAAGCGGATACCTGGTATATATTCATGTCCTAGGCCTATGTCATTGTTTTAGCATCATCATATA
TACTCCCTCCGCTATCCATGTGCCAGAGCCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAACT
TGTTTGGGACTAAAGGCTTTGTTGTTGTTGTTGTTGTATATATACTCCCTCCGTTCCCAAATACTATGTCTTTTTAGAGA
TTTCAACAAATGACTACACACAGAGCAAAATGAGTGAATCTATACTCTAAAATATGTCTACATACATCCGTATGTTGCAG
TCCATTTGAAATGTCTAAAAAGACTTATATTTAGGAACGGAGGAAGTAGATGGTATGGATCAGTGTAGTGCTCTAGTTCT
TAAAAGATGGGATCTGCATTTCATTGGGAGATAATCCATGCTGCTCTACACAAGGTTCCTTCCTGCTGTTTATTGTTGTG
TCCTGAAAAAATTGTTGATGTCATGCAAGTACAATGGGAGATAATTAATATTATTAGGTTCTTGTGTTGTTCATTGTTGT
GTCTGAAAGATGGTTGATGACGTGCAAGTACATCTGCTAGTTGACATCTTCAATGCATATATATTTTTCATCTTAAGCAG
CATCAGAAGAACTTAGGACGTTCATCTTCATCAAAGAGTTACTCGGTTCAGCAGAGGACAGGCAATCATAAGAAGCAGTC
CAAAGCACTACGCAAAAGTCTAACCATGGTACGTGGACATACGCAACAGAAAGTGCATCCCGGTATGTCATCCAGTCAAA
ATCATAAAACAGCTCATTATGGTGCTGTTACAGGATTAAGAACAACAACAGATGGGATGCACCTTCTTAGCTCAGGTTGA
GTTAATCTCTTCTCTATCGGTTATCTGCTGCGATGCCTGAAATTGGCATGCAGTGCAACAATGATAATTTAAGCTTAAGC
CTGTTATTAAGAAGAGGTTATCGTTTCTCTTCAGGATCTGATTCTCGTTTAAGACTCTGGGATATCGATTCAGGCTGCAA
TACTTTGGTCAATTTTGAAGCCATGCGATTGCAAACTAGCAAGCCACTACAACTAGCTGTCACTGATGATCCATCACTTG
TGTTCATTCCATGCATGTCAAGCATCAAGGTATGCTGTTGCTTTTCCAGCTTTATGGCTTCATTCTGCATTTTGAAGTTC
ACGTCTAAGTATTGTACTTGCT--TAGGCATACAATACATGGTCTGGTACGACATTTCAAACATTCCGTGGGCATTATGA
CCATGTAAATTGCTGCTACTATAACTCACAAGACCAAGTAAGTTTTCC-TCTATTGTTCTCTGTTAAGCTTTAGTGTTTT
AACATATATTCCATTCCTAAATGTTCGAGAATGCAGGAACTCTATACTGGTAGCAATGATCGACAAATTCTTGTGTGGTC
TCCATCGACTCCTGCTTTGACTGAAATGGTACAAAACCTATCCATTGACAGCATGCATTTTTTT----------------
TAGTGAGTTAATATTCTTCCAATGGGAGTTTGAGAAGGAA--GAGTACAAAGTTTTTGTGTAAATTTGATGATTTGACGC
TGCTAAATATCTGCAGGAAGACGATGACAAGCGGCAAGAAGGTTTTGCAGCTGATGAGGATAACTGGAGTGACTGAGAAC
TTCTGAGTTTTTTGAGGGAGAGGACTTATGAGTTGATCACGTGTATATATACAAGGTTACTAACAATATTGACACAAGTG
ATGCCGAAATAAAGTCAGGGTTCTTGTTAGGTATTACATGAACAAGTAATTACTTGTGTTTGCCTACTACTCCCTCCGTC
CGAAAATACTTGTCATCAAAATAGATAAAAATGAATGTATCTAGAACTAAAATATGTCTAGATACATCTCCTTTTATCCA
TTTTGATGACAAGTATTCCGGACGGAGGGAGTACTATGAGAGGATGTTGTAATTTAGGATTTGAACTTTTTGTAGTTCAT
TGAGACTTATGTATTCAGACATCATAACAAAAAGAGAGCAGTATTATGTACGGTTCACCCAACTGCTATTTATGTATACA
TTGTTCTTGCTAAGGCATTGCACATGTTTTATGTCTTCTCTGTGGCTAAAGTTCCTGAAGGGACCAGCAACCAAATT--T
ATAAAACCAAATTACCATTGCTATTGGTCT-GTTATCAGACAGATACTGAATACGGAGTAGTATTTAACTTAATCAGGGT
CCCCATCAGCAGAAGACACATGAGTTCTGCTGTTAGGTTCACATGATGCAACATATCACGCAACTTTTGATCAAGAGCAA
TGGCTCATGATTTCCATTATTCGTCTATTACATATTGGCGTGACATTGTTCAGTTTGTCAAT--------------G---
-----------ACATTGCTGAATTTGTGTGACTGCGTAAACAATAGATGTACATATGTTACAGCCTTACAGGAAGAAAAA
AAAACTCAGTTACAACTTGCACCAGGTTCAGAGAAGTTGCAGGCGCCTAGCCCGCACTTATTCCAGACCTATGCCCTTTA
TTCTGTTGCTGAGCTGCTAATATTCTCAGAACTACTCCCTCTGTCCAGAAATACTTGTCATCAAAATGGATGAAAATGAA
TGTATCTAGAACTAAAATGCATCTAGATACATCTATTTCAATGACAAGTATTTCCGGACGGAGGGAGTATGAGCCCAAGA
TATGCAGGAGCTGGTAGCTCATATTGCCTGAACTTGAGTTCCTAAACTACAAGGATCTGTTGGAGTTCCTAAGATACACA
GCTCTGTTATGTACTCCCTCCGTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGATGTATTTTAGTTCTAGATACA
TCCATTTTTATGCATTTCTCCGACAAGTATTTCCGGACGGAGGGAGTATAACTGTGCATCACTGGACATCCGCAATGGCA
ACCCGTTGAAAGGTTGAATCGGACGAACATACCATATATTGCTGCAAGTAACAGCTGATGCTGCAACAGCTTATTGTGTA
GGTGGATACACACGGAAGACCCTGGGTTGCAGCGAACATTCCCCA-
>chr3A_537
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTCGATCCATTGCA--AT
GGTGAACTTGATATCCTTCTTTTGTGAACGTTGTCGCGGGCCCTTTGCTGAACTTGCTATCCTTCCTTCGTAGGGGAGGA
GGTTGCGATTCAAGAGAATGA-AACTTCTAGGCTCGTGGGATTGTTAGGTGACGACTTTGAGATTCACAAAATCAACGGG
AGTCGTTTGCTGAGTATTAACTCGTTCAATTATCATCTTACTCTCAAGGTTCTCATGAAAATGTTTC-GATTAGATAGTA
TACACACAAAAATATAAGATTGCATGTCACACCTCCTGTTTTTCATGTCTTTTTAAAGAAGTATACAAGA-------CTA
CCAATTAAAACACATGTGATCATTAGTAAAGAACACTCTTTTTCCAAGGAGCAAAGAACACGCTTAATCCATCTACTATT
CCGTTTTTGTTATCATCAATAAGGCTCCTCCCAGTGCTTCACCTTGTACATATGCTAAGTCTTCCAGGTAGGTAAAAAAT
CTGATGTGGTAAGTTATTTAAAAGGAGAGAGATGAGTGTAGTAACCCCACAAGAAACAATGCTAAGCGCGTGAACCTAGG
CAAAACATTTAAAAAAGGAAGCCCACCAATACATGAAGAGCTTTAGTTGCTAAATCATTATATGAAGCAAGCTTAGCAAC
CATAAGCTAAGCACCTATGCATTGAGGAGTATAGTTGATAAGCTATTCTAAGCACCCATACATTAGCAACAGCCTAAAGA
ACACACTCAATCCATCTATTTTTGTTACTAGAACAATGCTCGTTCATTGCAACGGGATATAAATATTCTATTACGTTAGC
TTGTGATTTACCTGTCAATAATAATGCAATTGTGTAAATAAATGTTCATCAAATTCTGACCGTGAATTACCTTATATTTT
GATTAGAAGTTTGATAAGTAAAGTAAAGTGAAATTTGTTCAGAAGGTAAGTAAATTAAGATGATTGATTATTATATACAT
TGAAGGTTGGACAAAAGGTGGTAAGAAGAAAGGTGAAACGGGAACCTTATGTTCTTTTTAAGTAGTATGATATGATAGTG
ATAAGTAAAGTAAAGTGAAATTTGTTCAGAAGGTAAGTAAACTAAGATGATTGATTATCATATACGTTGAAGGTTGGATA
AAAGGGTGGTGAGAAGAAAGGTGAAACGGAACCTTATGTTCTTTTTAAGTAGTAGTGATTTACTGTTTACAATCGTTTCA
TCACATCCAT---AGGAGGACACGTGTACACCACTGACATCTGGATATAACCGCTGAATTTAA--------TGGAAGGGC
AACAATTGAGTCCCC-TACCTCACCGGTCA------GCTCAGCAGGCGCCCGATTCGCGCCGCCCTCCCCCTTCGCTCGC
GCCCGACTTCTGTCGCCGTTCGCCGCCGCAGAGCGCATACACCGCGGCGCGCCCCGAGTGGATGTGGTGGGAGGAGGTGA
GGAGGAGGGAACGCGGGGAGCTGCGCCCGCGGCGCTTCGAGGCCCTCGCCCGCTCGCGCCGCGCTGCCTCGCTCGCGCTC
TCCAACCGCAAGGAGATCGCGACCCCGCACCTCGGCGCCGTCAACTCCCTCCAGGTCCCCTTCTTCCCCCTCGCTCCCCC
AATCGCCCCCTGTCACTGCCTCCCCGCCCGCCGCCCCCGCATCAGCTGCGCGTAGCGCACAGATCAGCGGTACTATTAAT
TTTGCGTGTTAATGCGTCGAGAAACTGCGCCTAGCGAGATCGAACTTCTGTGCGGATGCGTCAATCGACGTTGCCGGCGT
TCGTAATTTGACAATATGGCCAGGTTGATTTGACAGAGGGGAGGTACCTGCTCTCGGGGGCGTCGGACGGATCGGCCGCC
GTCTTCGATCTCAAGGACGCGACGGAGTACGAGGCCGGGTTCATAGCCAAGCACAGGAGCATTCTGCTCGTGGACAGGCA
GCATCAGCATGGCCACAAGTTCACCGTCTCCAAGGCCATCTGGTATCCTGTGGACACCGGGCTGTTCGTCACGGCCTCCT
TCGATAACTATGTCAAAGTGTGGGATACCAATTCCAGTCAAGTATGTGTGT------TTTGCTTTGTTTGATGCCGATCT
TAATATTTTGCCCCGTTGAGGTGTTGATTCAGATGTTCTGGTCATTCTGGGATTGGTTTTCTTTTTCCTAGGTGGTCATG
GATTTTAAGATGCCCGGAAAAGTGTACAGTGCTGCAATGTCCCCAATTGCAACAACGCATATGCTCATCGCAACCGGAAG
CGCAGACGTTCAGGTCCGTTTGTGTGATATTGCTTCCGGAGCCTTTACTCACACGTTGTCCGGTCATCTTGGTTAGTCCC
TTCCTGCTAGTGTGATGATGAAACACCATTCTTGTTTTGTTTTTTATGCTTATCCTCATCGATCATCTCAGATGGTATCA
TGTCTTTGGAGTGGTCTACCTCAAGCGAGTGGATCCTAATGAGTGGTGGCTGCGACGGGGCGATACGTTTTTGGGACATA
AGACGAGCTGGATGCTTCCTTGTCCTTGATCAGTTACGGTCTCAGCTAGGAAGACGGCCTCCCATTATTGATAGCACCAC
GGACAACGTATGCTTGCCGTCATCCTTTACTTTT-ATCTGCTTCTGGGTTTGGTTATTTCTTCAGATTATATTTGCTCGC
AGGGCTAATACAGAACTGCTTGCTATTATTCTGGCTACTATTCCAAAACTGTTAGGTCTCCAAGTAGGAGTGGATTTTTC
CTGCAAGAAAAGGGTACAAGCGGATATCTGGTATATATTCATGTCCTAGGCCTATGTCATTGTTTTAGCATCATCATATA
TAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATGGTATGGATCAGTGTAGTGCTCTAGTTCT
TAAAAGATGGGATCTGCATTTCATTGGGAGATAATCAATGCTGCTCTACACAAGGTTCCTTCCTGCTGTTTATTGTTGTG
TCCTGAAAAAATGGTTGATGTCATGCAAGTACAATGGGAGATAATTAATATTATTAGGTTCTTGTGTTGTTCATTGTTGT
GTCCGAAAGATGGTTGATGACGTGCAAGTACATCTGCTAGTTGACATCTTCAATGCATATATATTTTTCGTCTTAAGCAG
CATCAGAAGAACTTAGGACGTTCATCTTCATCAAAGAGTTACTCAGTTCAGCAGAGGACAGGCAATCATAAGAAGCAGTC
CAAAGCACTACGCAAAAGTCTAACCATGGTACGTGGACATACGCAACAGAAAGTGCATCCCGGTATGTCATCCAGTCAAA
ATCATAAAACAGCTCATTATGGTGCTGTTACAGGATTAAGAACAACAACAGATGGGATGCACCTTCTTAGCTCAGGTTGA
GTTAATTTCTTCTCTATTGGTTATCTGCTGCTATGCCTGAAATTGGCATGCAGTGCAACGATGATAATTTAAGCTTAAGC
CTGTTATTAAGAAGAGGTTATCGTTTCTCTTCAGGATCTGATTCTCGTTTAAGACTCTGGGATATCGATTCAGGCTGCAA
TACTTTGGTCAATTTTGAAGCCATGCGATTGCAAACTAGCAAGCCACTACAATTAGCTGTCACTGATGATCCATCACTTG
TTTTCATTCCATGCATGTCAAGCATCAAGGTATGCTGTTGCTTTCCCAGCTTTATGGCTTCATTCTGCATTTTGAAGTTC
ACGTCTAAGTATTATACTTGCT--TAGGCATACAATACATGGTCTGGTACGACATTTCAAACATTCCGTGGGCATTATGA
CCATGTAAATTGCTGCTACTATAACTCACAAGACCAAGTAAGTTTTCCCTCTATTGTCCTCTC-TAAGCTTTAGTGTTTC
AACGTGTATTCCATTCCTAAATATTCGAGAATGCAGGAACTCTATACTGGTAGCAATGATCGACAAATTCTTGTGTGGTC
TCCATCGACTCCTGCTTTGACTGAAATGGTATAAAATCTATCTATTGACACCATATGCAGTG----TTTTTGCATTTTTC
TAGTGAGTTAATATTCTCCCAATGGGAGTTTGAGAAGGAATTTAGTACAAAGTTTACGTGTAAATTTGATGATTTGACGC
TGCTAAATATCTGCAGGAAGACGATGACAAGCGGCAAGAGGGTTTTGCAGCTGATGAGGATAACTGGAGTGACTAAGAAC
TTATGAGTTTTTTGAGGGAGAGAACTTATGAGTTGAGCA--TGTGTATATACAAGGTTACTAACAATATTGACACAAGTG
ATGCCGAAATAAAATCAGGGGTCTTATTAGGTATTACACGAACCAGTAATTACTTGTGTTTGGTTACCACTC--------
--------------------------------------------------------------------------------
------------------------------------TGAGAGGATGTTGTACATTAGAATTTGAATTTTTTGTAGTTCAT
TGAAACTTATGTATTCAGACATCATCACAAAAAGAGGAGAGTACTATGTATGGTTCACCCAACTGTTATTTATGTACC--
TTTTTCTTGCTAAAGCATTGCACATGTTTTATGCCTTCTCTGATGCTGAAGTTCCTGAAGGGAACAATGATGAAATTAAT
ATAAAACCAAATTACTATTGCCATTGGTCTTGTTA-----------------------------------TGAACAGGGT
CCCCAGCAGCAGAAGACACATGAGTTCTACTGTTAAGTTTACATGATGCAAG-TATCATGCAACTTTTGATCAAGAGCAA
TGGCTCCTGATTTCCATTATTAATCTATAACATATTGGTGCGACATTGTTCAGTTTGTCCAT--------------GTTA
CAACTGGCACGACATTGCTGAATTTGTGTGACTGCGTAAACAATAGATGTACATATGT----GCCTTACAGGG---AAAA
AAAACTCAGTTACAACTTGCACCAGGTTCAGAGAAGTTGCGGGCGCCTAGCCCGCACTTATTCCAGACCTACCA--TTTA
TTGTGTTGCTGAGCTGCTAATATTCTCAGAACTATGATTTGC--------------------------------------
---------------------------------------------------------------------TGAGCCCAAGA
TATGCAGGACCTGGTAGCTCATATTGCCTGAACT----TTCCTAAACTACAAGGATCTGTTGGAGTTCCTAAGATACATA
GCTCTGTTAT----------------------------------------------------------------------
---------------------------------------------GTATAACAGTGCGTAACTGGAAATCCGCAATGGCA
ACCCATTGAAAGGTTGAATCGGACAAACATACCATATATTGCTCCAAGTAACAGCAGATGCTGCGACAGCTTATTGTGTA
GGTGGATACATACGGATGATCCTGGGTTGCGGCGAACATTCCCCAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----
-S-S-------------S-SSSSSSSSSSSS---------------S-------------------------------SS
----------SSSSSSSS-------S------S---------------------S----SSS----S-S-----------
---SSS-----------S---------SSSSSSSSSSSSSSSSSSSSSSSS-----------S--SSSS-----------
-----SSSS------SS-S------S-S------S--S-S-----S------S---S------S------S---------
-------------------------------------------------------------S--S---------------
-----------------------S------------S-----------------------------S-------S-----
S------------------SSS--------SS------SS---------------------SS-S----------SSS--
-------------S------------------------------------------------------------SSSSS-
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---------------------------------------------------------------------------S----
----------SS-----------------SS-------------------------------------------------
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------------------------------------------S-----------S-------------------------
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---------------------------------------------------------------------S----------
------S--S-S-S---S---------------------------S------S---------------------------
--------------------------------------S------------S-----------S----------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
---------------------------------------------------------------------------S----
-S------------------------------------------------S---S----SS----------------S--
------------------------------------S-------------------------------------------
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-------------S------------------------------------------------------S-----------
--------S------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------S-------------------------S------------------------------------
-----------------------S--------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----S--------------------------------------------------------------------------
---S----------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------S-----------------------
----------------S-----SS--------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
---------------------------------------------------------S------SS--------------
---S-----------------------------------------------S-----S-------------------S--
----------------------------------------------------------------------------SS--
--S----------S-------S-----S------------------------S----------------------S----
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--------S-------------------------------------------S--------
------S--S----------S--------------------------------S--------------------------
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-------S-------------------S---------------S--S---------------------------------
--------------------------------------------------------------SSSSSSSSSSSSSS----
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------------------------------S------------------------------------S-S------S---
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--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
---S----------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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----------------S--------S-------S----S-------
>forward_635
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-------------------------------------------------------GCTATCCTTCCATCGTGGGT-----
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>reverse_2615
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------------------------------------------------------TGCTTCACCAATCCTGACCT------
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>forward_2304
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--------------------------------------------ACTTCTGTTCGGTGCGTGAG----------------
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>reverse_4369
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------------------------------------------------GCAATTAGCTGTCACTGATGATCC--------
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>forward_2869
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-------------------------------------------------CACACGTTGTCCGGTCATCA-----------
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>reverse_5036
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---------------------------------------------------------------------------GAGTG
ATGCCGAAATAAAGTCAGG-------------------------------------------------------------
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----------------------------------------------
