>input_sequence_29415
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--------------------------------------------------------GACCTCGACGGCTGCAAGCTAGCT
AGCT----CCGGCGCTGCGCTGGCCAACTCGGGACCTGTCGCGCTCGCCTTCGCAACGAACACCTCGTTCTCTGCTGGCG
GCAGAGGTGGATCAAGGCTGTCGATACCCATGGCCATGACGCCGCCGTCCTCCTTCCCGCCGGCGTCCCCGTCGTCGTAC
TTCAACATGTCCTCCGGGTTCCTCGACTCGCCGGTCCTCCTCACCCCCAGCGTAAGCACCGATCGAGCAGTTCATCGTAA
TCATCCCTCCCGCCGTGCCGCGCATGCGTGCACTGCAACGGTGCAAGTGGCTTATTT-CAAACATGGAAGCTGACAGATG
TGGGTGTGCTTGTTTCAGCTATTCGCATCGCCGACGACGGGCGCATTCCCCTCGCACCAGTTCAACTGGATGGGGACGCC
GGAGAACGACGGCCTGCAGGGAAGCACCAGCCAGGACGAGCAGCGGCAGTACTCCGGCTTCACGTTCCAGACGACGGCGC
CGCTGCCGGCGGTGACCACCACGACCGCGTCCTCCTTCCTGCAGTCGTCCATGCCCATGGCTCAACTGGTAAGACCGAAT
GATCAACTACATGCAAAGTCACTCGTTAAGAGAACGA----------------------------------------CAT
TTTGACAGTTGACTGGAAGATAGACGACCCCGGCTTCTTACTTGGAATATTCAGGCCCACTCATAATATTTTCTTTGTAC
TTCTAGCCCACAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AATTTAAGCC
TACT-------------------------CAGAACATTGAGGCCCGCTCAGCGTTTGCCACACTTCTACTGTAGGAGTAC
TTCTACCCCACATACTATTTTTTCTGATTTCCT--------AAAAAAAAAACTAA----TGTCATCTCCTGACTTGTTCA
CAATATGTGACTTGTCTTCACATGCCTTTATGCTTATCAGGTCAAAAAAATGCACACACGCATTATCTCTTAATATCATT
TGGAAATTAAAACACTGTAGTCAACGCTGTCACACTCCAAGCTCAAGTCAAAACCATTGTACCAATTGTGCCCGTGCACT
TGTACTACATGATCTCTAATATATTGTGCTACTGTAGGTGGGAGACTCGTACGAGCAGCAG------CAGCAACCGTGGA
GCTACCAAGACACGGGCATGAACGGGGGCGCGAGGCCGGCCGAGTTCACCACGCAATTCGAGCCGCCGACCACGTCGACC
ATCATGGCGACGACGGCGCCCGACGTGCTCGGGAACGGCGCCTACAGCGTCCCGGTGCCGTCGGGGACGGCCGGGTACCG
CGTGCAGAGCCGGCGGCCGTCGTCGGACGACGGCTACAACTGGCGCAAGTACGGGCAGAAGCAGATGAAGGGGAGCGAGA
ACCCGCGCAGCTACTACAAGTGCTCCTTCGCCGGCTGCCCCACCAAGAAGAAGGTGGAGCAGGCGCCCGACGGTCAGGTC
ACCGAGATCGTCTACAAGGGCACGCACAACCACCCCAAGCCGCAGAACCCGCGCCGGGGCTCCGGCTCGGCGGTGTCGTC
GTCGTACGCGCTGCAGTGCCACGGGGCCAACGACGCGTCGAGCGACGCGCTCTCCGG---------CACGCCCGAGAACT
CCTCGGCGTCCTACGGGGAGGACGAGACGAACGGCGTGAGCTCGAGGCTGGCCGGAGCCGTCGGCGGCGGTGATGATCAG
TTCGACGACGAGGAGCCTGACTGCAAGAGATGG-----------------------------------------------
---------------------------------------------------------------------------AGGAG
CGACGGCGAGGCGACGATTATGGGCGTCGGCAACCGGACGGTGCGGGAGCCGAGGGTCGTCGTCCAGACGATGAGCGACA
TCGACATCCTCGACGATGGCTACCGGTGGCGCAAGTACGGGCAGAAGGTGGTCAAGGGCAACCCAAACCCGAGGTACGTT
CGAGCTGAAGGTTTACCGAACTTCTTGAGATGAAGCACGAATGTTGGACACGTGTGAGCTGACATGCACGGCTTTGCCTT
TCTCTT-CTCGGCAGGAGCTACTACAAGTGCACGACGCCCAACTGCCCGGTGCGGAAGCACGTGGAGCGCGCGTCGCAGG
ACCTGCGGGCCGTGGTCACCACGTACGAGGGCAAGCACAACCACGACGTGCCGGCTGCGCGCGGGAGTGCCGCCGCAGCA
GCACGGTACCGCGCCGCGACGCTGCAACCGGCCGCGAGCTACCTGCAGGGCGCCGGCGGCTATTCCAGCCTTCGCCCCGA
CGGGTTCGGCGGCGTCGACGGCGGCGGCGCGCCCGCGGAGATGAGCGGGTTCGCGCTGTCCGGGTTCGGCAACCCCTCGT
ACTCGTACCCGAGCATGCAGGAGCAGCAGCAGCAAC------------AGAGCGACGCGATGTACTACGACGCCTCGAGG
ACCAAGGACGAGCCGAGGGACGACATGTTCTTCGGCCACTCGTCGATGTTCTGACCGGAAAATTCTCAACGACACCCATC
GAAATCAAGG----------------------AGTAGGATT---GTTCATTTTTATCTTTTTTTGGACTGTGTGTGCATA
GGTCTCCGGTCAGGTTAGTTCA-TTTTTTTGGAGGCCCGGACAAGGACATGACTGCCAGAATGGTGGTGGCACATGGCCT
CCATTTAACACCTTGCACAAGGAAGAT-------------TAGTAGCATAGGGAATAAAGTAGAGGA-------TCCATT
TAAGTTTTTTTC---GGCAGTTTGACTGCCTTTTATTCTCGGTGAAAATTCGTTGTAATCA---TATTAATTTTACCCTT
AATTTTAACACAAGCTTGAATGATCTCAGTC-------------------------------------------------
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-----------------------------------------------------------------------
>chr1A_1_TraesCS1A01G298600
CATGTACAACTCTGGGAAAGCATGGAAGGGACCGACGCTCCAGGGAGGGAAGCGATATGGGAACGATGCGGTCGCCCGAC
CGTGCGACAAGACCATAGGGTTTCACTCAAAGACACATCCCCTAAGAGTTGGAAAAGGTCGGAGAGCTCCATGATGACGC
CCGCGGGCAACGCGCCGTCGACCGATTTATATTCAACTGAAGGTTTCTGCTGTCATTTTGTAGTCATGGTTTTATCATAT
ATTTCACTTTATATACTCTTCTACTAATAACTCGTGGTTTTGTGTGTCGTCTAGATTAATAATAGGTTGAAAGATATGAA
TTTCTCCCTTTCCATAGAAAAAGGAGACAGAGATGTTGTAGTAACATTTTGGTCAAATTGCATCGGTGCTACAGTATTTC
TTTTGGGTGCCAAATGTTTGAAAACCGAGAATGAACCGACTTATTTTGGAAACAAAGTGTTCAGTTAACAATTTTTAGCT
CCCAGCAAAAAATTTATATTTAACAAAACTTAATTAACTCCCAGCAAGAAATGAGCTTAATGAACACTGTCAAGACAAGT
CTCCCGGTCGCCGCAAAGCGATACTGA-GATGTGGCTTAATTTAACTAAT-------------CAACGAGCGCATTGTGG
TTGGCCCA-GGCCATGATCCCAGTCGACAAGAACTAGTCAGACAAACGATCCACGGCCGTCACTCCCTCCGCCCACCCAA
AACTGTACCCGCCTCCGCACAGCCCCCTCCAAAGAGGTCCCGCAACCCGCCACGTGAGCCACCAAGCGCAC-TCCCATTG
GTGGGTATCCCATCCTTCTAACCATCGCGCTGGTCGTAGCCGCCAGTCAAAGAAGCATTGCTTTGACCAGTCAACGGTCA
AATATTCAAACCTCTATATAGGCCTCGGCCGGTCCTGTCCGGAGAGTCATCTCATCACCGTCGATCGATCCCATTCCCAG
CTGCGCGCGCTCTTTGCTCCCCTTCTCCCTCTCCGGCCGTCTCCCTCGCCGCCGGTGACCTCGACGGCTGCAAGCTAGCT
AGCT----CCGGCGCTGCGCTGGCCAACTCGGGACCTGTCGCGCTCGCCTTCGCAACGAACACCTCGTTCTCTGCTGGCG
GCAGAGGTGGATCAAGGCTGTCGATACCCATGGCCATGACGCCGCCGTCCTCCTTCCCGCCGGCGTCCCCGTCGTCGTAC
TTCAACATGTCCTCCGGGTTCCTCGACTCGCCGGTCCTCCTCACCCCCAGCGTAAGCACCGATCGAGCAGTTCATCGTAA
TCATCCCTCCCGCCGTGCCGCGCATGCGTGCACTGCAACGGTGCAAGTGGCTTATTT-CAAACATGGAAGCTGACAGATG
TGGGTGTGCTTGTTTCAGCTATTCGCATCGCCGACGACGGGCGCATTCCCCTCGCACCAGTTCAACTGGATGGGGACGCC
GGAGAACGACGGCCTGCAGGGAAGCACCAGCCAGGACGAGCAGCGGCAGTACTCCGGCTTCACGTTCCAGACGACGGCGC
CGCTGCCGGCGGTGACCACCACGACCGCGTCCTCCTTCCTGCAGTCGTCCATGCCCATGGCTCAACTGGTAAGACCGAAT
GATCAACTACATGCAAAGTCACTCGTTAAGAGAACGA----------------------------------------CAT
TTTGACAGTTGACTGGAAGATAGACGACCCCGGCTTCTTACTTGGAATATTCAGGCCCACTCATAATATTTTCTTTGTAC
TTCTAGCCCACAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AATTTAAGCC
TACT-------------------------CAGAACATTGAGGCCCGCTCAGCGTTTGCCACACTTCTACTGTAGGAGTAC
TTCTACCCCACATACTATTTTTTCTGATTTCCT--------AAAAAAAAAACTAA----TGTCATCTCCTGACTTGTTCA
CAATATGTGACTTGTCTTCACATGCCTTTATGCTTATCAGGTCAAAAAAATGCACACACGCATTATCTCTTAATATCATT
TGGAAATTAAAACACTGTAGTCAACGCTGTCACACTCCAAGCTCAAGTCAAAACCATTGTACCAATTGTGCCCGTGCACT
TGTACTACATGATCTCTAATATATTGTGCTACTGTAGGTGGGAGACTCGTACGAGCAGCAG------CAGCAACCGTGGA
GCTACCAAGACACGGGCATGAACGGGGGCGCGAGGCCGGCCGAGTTCACCACGCAATTCGAGCCGCCGACCACGTCGACC
ATCATGGCGACGACGGCGCCCGACGTGCTCGGGAACGGCGCCTACAGCGTCCCGGTGCCGTCGGGGACGGCCGGGTACCG
CGTGCAGAGCCGGCGGCCGTCGTCGGACGACGGCTACAACTGGCGCAAGTACGGGCAGAAGCAGATGAAGGGGAGCGAGA
ACCCGCGCAGCTACTACAAGTGCTCCTTCGCCGGCTGCCCCACCAAGAAGAAGGTGGAGCAGGCGCCCGACGGTCAGGTC
ACCGAGATCGTCTACAAGGGCACGCACAACCACCCCAAGCCGCAGAACCCGCGCCGGGGCTCCGGCTCGGCGGTGTCGTC
GTCGTACGCGCTGCAGTGCCACGGGGCCAACGACGCGTCGAGCGACGCGCTCTCCGG---------CACGCCCGAGAACT
CCTCGGCGTCCTACGGGGAGGACGAGACGAACGGCGTGAGCTCGAGGCTGGCCGGAGCCGTCGGCGGCGGTGATGATCAG
TTCGACGACGAGGAGCCTGACTGCAAGAGATGG-----------------------------------------------
---------------------------------------------------------------------------AGGAG
CGACGGCGAGGCGACGATTATGGGCGTCGGCAACCGGACGGTGCGGGAGCCGAGGGTCGTCGTCCAGACGATGAGCGACA
TCGACATCCTCGACGATGGCTACCGGTGGCGCAAGTACGGGCAGAAGGTGGTCAAGGGCAACCCAAACCCGAGGTACGTT
CGAGCTGAAGGTTTACCGAACTTCTTGAGATGAAGCACGAATGTTGGACACGTGTGAGCTGACATGCACGGCTTTGCCTT
TCTCTT-CTCGGCAGGAGCTACTACAAGTGCACGACGCCCAACTGCCCGGTGCGGAAGCACGTGGAGCGCGCGTCGCAGG
ACCTGCGGGCCGTGGTCACCACGTACGAGGGCAAGCACAACCACGACGTGCCGGCTGCGCGCGGGAGTGCCGCCGCAGCA
GCACGGTACCGCGCCGCGACGCTGCAACCGGCCGCGAGCTACCTGCAGGGCGCCGGCGGCTATTCCAGCCTTCGCCCCGA
CGGGTTCGGCGGCGTCGACGGCGGCGGCGCGCCCGCGGAGATGAGCGGGTTCGCGCTGTCCGGGTTCGGCAACCCCTCGT
ACTCGTACCCGAGCATGCAGGAGCAGCAGCAGCAAC------------AGAGCGACGCGATGTACTACGACGCCTCGAGG
ACCAAGGACGAGCCGAGGGACGACATGTTCTTCGGCCACTCGTCGATGTTCTGACCGGAAAATTCTCAACGACACCCATC
GAAATCAAGG----------------------AGTAGGATT---GTTCATTTTTATCTTTTTTTGGACTGTGTGTGCATA
GGTCTCCGGTCAGGTTAGTTCA-TTTTTTTGGAGGCCCGGACAAGGACATGACTGCCAGAATGGTGGTGGCACATGGCCT
CCATTTAACACCTTGCACAAGGAAGAT-------------TAGTAGCATAGGGAATAAAGTAGAGGA-------TCCATT
TAAGTTTTTTTC---GGCAGTTTGACTGCCTTTTATTCTCGGTGAAAATTCGTTGTAATCA---TATTAATTTTACCCTT
AATTTTAACACAAGCTTGAATGATCTCAGTCTAATGTATCTCGGGTTTGGGTTATTTTAACACTGCCAGTATGTATCCGC
GTTATTTTGTGGACAAGATAAATATACTCTAAATGATCGCCGCCCGTGGCGGAGTCCATGCCCCACGTCTTGTTTTCCCC
ATGTCTGGCAAACTCACCAGCCATGAGCCCCGGGAAATGAAACTGCAGGAGGGGAAGAGTAGAAGTGGCCTTCCTGGGAC
CAAGCCACGATGGTGTCCCATGTGCTACTCTTCCTCACCGGAGTCCGCTGTATTGACGGCGCCACACGTGGATGGGTCAA
CCTTGTGGTCGTCACGGTCGCCTGCGCCTCCTCTTCGACCACCTCCGTGTCGATCTCCATGAACAGGGTGTCCCTCTCCT
CCCTCTCCTAAGAAGAGATTTGCCTCTCATCCCAAGAACACGCCATGGCTTCTCTGCACAAAAACTCGATAAAGGTCTAA
AGAGATTTGGTTTTGTTATTTGTGAGAAGAAGGAAGGCCTTAGAGCGGTATATAAGAGGGTTAGGTCGCAAGATTTCGCA
AGCTAAAGGCAGTTGGAAAAGATTAGGAAACAAACTGAACGAAACCGGATCAAATCAGCACAAGATCATGCCTTCCGAGC
GAAGGAGGGCGCACGGTACAAGTGCTTGTGACCGCACCGCCTCCTTTTGCCAGCGTTCAAATCATCTAAAACGAAAGACA
GCCGATGGTATGAGCGCTATGTTGGGGAACGTTGCAGAAAACAAAAAATTTTCCTACTCGTTTCACCAAGATCATCTAGG
AGTTCATCTAGCAAGGAGTGATTAGATGCATCTACATACCTTTGTAGATCGCGAGCGGAAGCGTTCAAAAGAACGGTGAT
GATGTAGTCGTACTCGACGTGATTCAAATCACCGATGACCAGCGCCGAACGGACGGCACCTCCGCGTTCAACACACGTAC
GGAACAGCCACGTCTCCTCCTTCTTGATCCAGCAAGGGAGGGAGGAGAGGTTGAGGGAGATGGCACCAGCA
>chr1B_499
--------------------------------------------------------------------------------
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------------------TTTAACAAAACTTGATTAACTCCCCGCAAAACAAGCT-TTAATTAACGCTCGCAAGGCAAGT
CTCCCAGTCGCCGCAAAGCCACTGCACTGATATGGCTTAATTTTAATTTATATATAACTAACCCAATGAGCGCATTGTGG
TTGGTCCTTGGCCATGATCCCAGTCGACAAGAAGTAGTCAGACAAACGATCCACGGCCGTCACTCCCTCCGCCCACCCAA
AACTGTACCCGCCTCCGCACAGCCCCCTCCAAAGAAGCCCCACCACCCGCCACATCAGCGACAGCGCGCAC-TCCCATTG
GTGTGTATCT-----TTCTAACCAATGTGCTGGTCGTAGCCGCCAGTCAAAGAAGCATTGCTTTGACCGGTCAACGGTCA
AATATTCAAACCTCTATATAGGCCTCAACCGGTCGTGTCCGGAGAGTCATCTCATCACCGTCGATCGATCCCATTCCCAG
CTGCGCGCGCTCTTTGCTCCC-TTCTTCCTCTCCGGCCGTCTCCCTCGCCACCGGTGACCTCGACGGCTGCAAGCTAGCT
AGCTAGCTCCGGTGCTGCGCTGGCCAACTCGGGACCTGTCGCGCTCGCCTTCG---CGAACACCTCGTTCTCTGCTGGCG
GCAGAGGTGGATCAAGGCTGTCGTTACCCATGGCCATGACGCCGCCCTCCTCCTTCCCGCCGGCGTCCCCGTCGTCCTAC
TTCAACATGTCCTCCGGGTTCCTCGACTCGCCGGTCCTCCTTACCCCCAGCGTAAGCACCGATCGAGCAGTTTATCGTAA
TCATCCCTCCGGCCGTGCCGCGCATGCGTGCAGTGCAACGGTGCAAGTGGCTTATT-CCAAACATGGAAGCTGACAGATG
TGGGTGTGCTTGTTTCAGCTATTCGCATCGCCGACGACGGGCGCGTTCCCCTCGCATCAGTTCAACTGGATGGGGACGCC
GGAGAACGACGGCCTGCAGGGAAGCGCCAGCCAGGACGAGCAGCGGCAGTACTCCGGCTTCACGTTCCAGACGACGGCGC
CGCTGCCGGCGG---CCACCGCGACCGCGTCCTCCTTCCTGCAGTCGTCCATGCCCATGGCTCAACTGGTAAGACTCAAT
GATCAACTGCATGCAAAGTCACTCGTTAAGAGAACGACATTTTGACAGTTTTTTGAAAGACCCAGCATGATCACTGACAT
TTTGACAGTTGACTGATAGATAGACGACCCGGGCTTCTGGTTTAGAATATTCAGGCCCACTCATAATATTTTCTTGGTAT
TTCTACCCCACAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AATTTAAGCC
TACTCCTTGCTCAAAAAAAAAAGCCTACTCAGAATATTGAGGCCCGCTCAGCGTTTGCCACACTTCTAC-----------
-----CCCCACATACTTTTTTTTTACCGATTTCCTCAAAAAAAAAAAAAAACTGG----TGTCATCTCCTGACTTGTTCA
CAATTTGTGACTTGTCTTCACATGCCTTTATGCTTGTCATGTCAAAGAAATGCACACACGCATTATCTCTTAATATTATT
TGGAAATTAAAACACTGTAGTCAGCGCTGTCACACTCTAAGCTCAAGTCAAAACCATTGTACCAATTGTGCCCATGCACT
TGTACTACATGATCTCTAATGTATTGTTCTACTGTAGGTGGGAGACTCATACGAGCAGCAGCA---ACAGCAACCGTGGA
GCTACCAAGACACGGGCATGAACGGGGCCACGAGGCCGGCGGAGTTCACCACGCAATTCGAGCCGCCGACGACGTCCACC
ATCATGGCGACGACGGCGCCTGACGTGCTCGGGAACGGCGCCTACAGCGTCCCGGTGTCTTCGGGGACGGCCGGGTACCG
CGTGCAGAGCCGGCGGCCGTCGTCGGACGACGGCTACAACTGGCGCAAGTACGGGCAGAAGCAGATGAAGGGGAGCGAGA
ACCCGCGCAGCTACTACAAGTGCTCCTTCGCCGGCTGCCCCACCAAGAAGAAGGTGGAGCAGGCGCCCGACGGCCAGGTC
ACCGAGATCGTGTACAAGGGCACGCACAACCACCCCAAGCCACAGAACCCGCGCCGGGGCTCCGGCTCGGCGGTGTCGTC
GTCGTACGCTCTGCAGTGCCACGGGGCCAACGACGCGTCGAGCGACGCGCTCTCCTG---------CACGCCCGAGAACT
CGTCGGCGTCCTACGGGGACGACGAGACGAACGGCGTGAGCTCAAGGCTGGCCGGAGCCGTCGGCGGCGGTGAGGATCAG
TTCGACGACGAGGAGGCTGATTGCAAGAGATGG-----------------------------------------------
---------------------------------------------------------------------------AGGAG
CGACGGCGAGGCGACGGTTATGGCCGTCGGTAACCGGACTGTGCGGGAGCCAAGGGTCGTCGTCCAGACGATGAGCGACA
TCGACATCCTCGACGACGGCTACCGGTGGCGCAAGTACGGGCAGAAGGTGGTCAAGGGCAACCCGAACCCGAGGTACGTT
CGAGCTGATGGTTTACTGAACTTCTTGAGATGAAGCACGAATGTTGGACACGTGTGAGCTGACATGCACGGCTTTGCCTT
TCTCTT-CTCGGCAGGAGCTACTACAAGTGCACGACGCCCAACTGCCCGGTGCGGAAGCACGTGGAGCGCGCGTCGCAGG
ACCTGCGCGCCGTGGTCACCACCTACGAGGGCAAGCACAACCACGACGTGCCCGCCGCGCGCGGGAGCGCCGCCGCAGCA
GCGCGGTACAGAGCCGCGACGCTGCAGCCGGCCGCGAGCTACCTGCAGGGCGCCGGCGGCTATTCCAGTCTTCGCCCCGA
CGGGTTCGGCGGCCTCGACGACGGCGGCGCGCCCGCGGGGATGAGCGGGTTCGCGCTGTCCGGGTTCGGCAACCCGTCGT
ACTCGTACGCGAGCATGCAGGATCAGCAGCAGCAACCACAGCAGCAGCAGAGCGAAGCGATGTACTACGACGCCTCGAGG
ACCAAGGACGAGCCGAGGGACGACATGTTCTTCGGCCACTCGGTGATGTTCTGACCGGGGAATTCTCAACGCCACCCATC
GAAATCAAGG----------------------AGTAGGATTCTTGTTCATTTTTATCCTTTTTTGGACTGTGTGTGCATA
GGTCTCGGGTCAGGTTTGTTCATTTTTTTTGGAGGCCCGGACATGGACGTGACTGCCAAA-----------ACATGGCCT
CCATTTAACACCTTTGCACAAGGGGCTTAGAAAAGATTAGTAGCAGCATAGGGAATAATAAGAAAGTACAGTAGTCCATT
GAAGTTTTTTTTCCTGGCAGTCTGACTGCCTTTTATTTTCAGTAAAAATTTGTTGTAATCATCATATTAATTTTA-----
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>chr1D_551
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----------------------------------------------------------------------CAAGGCAAGT
CTCCCGGTCGCCGCAAAGCCACTGCACTGATATGGCTTATAATTTAATAATA-ATAACTAACCCAATGAGCGCATTGTGG
TTGGTCCTTGGCCATGATCCCAGTCGACAAGAACTAGTCAGACAAACGATCCACGGCCGTCACTCCCTCCGCCCACCCAA
AACTGTACCCGCCTGCGCACAGCCCCCTCCAAA-AAGCCCCACAACCCGCCACGTCAGCGACCAAGCGCACTTCCCATTG
GTGGGTATCT-----TTCTAACCATCGATCCGGTCGTAGCCGCCAGTCAAAGAAGCATTGCTTTGACCAGTCAACGGTCA
AATATTCAAACCTCTATATAGGCCTCAACCGGTCCTGTCCGGAGAGTCATCTCATCACCGTCGATCGATCCCATTCCCAG
CTGCGCGCGCTCTTTGCTCCCCTTCCTCTTCTCTCGCCGTCTCCCTCGCCTCCGGTGACCTCGACGGCTGCAAGT----T
AGCTAGCTCCGGCGCTGCGCTGGCCAACTCGGGACCTGTCGCGCTCGCCTTCG---CGAACACCTCGTTCTCTGCTGGCG
GCAGCGGTGGATCAAGGCTGTCGATACCCATGGCCATGACGCCGCCGTCCTCCTTCCCGCCGGCGTCCCCGTCGTCGTAC
TTGAACATGTCCTCCGGGTTCCTCGACTCGTCGGCCCTCCTCAGCCCCAGCGTAAGCACCGATCGAGCAGTTCATCGTAA
TCATCCCTCCCGCCGTGCCGCGGATGCGTGCAGTGCAACGGTGCAAGCGGCTTATTTCCAAACATGGAAGCTGACAGATG
TGGGTGTGCTTGTTTCAGCTATTCCCATCGCCGACGACGGGCGCATTCCCCTCGCATCAGTTCAACTGGATGGGGACGCC
GGAGAACGACGGCCTGCAGGGAAGCGCCAACCAGGACGAGCAGCGGCAGTACTCCGGCTTCACGTTCCATACGACGGCAC
CGCTGCCGGCGG---CCACCGCGACCGCGTCCTCCTTCCTGCAGTCGTCCATGCCCATGGCTCAACTGGTAAGACCGAAT
GATCAACTGCATGCAAAGTCAATCAAGAGAAG-------------------------------------------GACAT
TTTGACAGTTGGCTGATAGATAGACGACCCGGGCTTCTGATTCAGAATATTCAGGCCCACTCATAATA--------GTAT
TCCTAGCCCACTTTTAGTGGGTCTGTCTATATCACATCTAGATGTGAGATATTATCTCACATCTAACTCTCTCATTTTTG
ATTTTTTTTTTAAAGTCTTTCATAATTTTGTTTTGTCCCTAAGGATGAGGGAGTTANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACATCTAGATGTGAAATAGCAAACCTGAATTTAAGCA
TACT-------------------------CAGAATATTAC-----------------CCACACTTCTACTGTAGGAGTAT
TTCTACCCACATACT--TTTTTTCTGATTTCCT--------CAAAAAAAAAAAAACTGTTGTCATCTCCTGACTTGTTCA
CAATTTGTGTCTTGTCTTCACATGCCTTTATGCTTATCAGGTCAAACAAATGCGCAC--GCATTATCTCTTAACATTATT
TGGAAATTAAAACACTGTAGTCAACGCTGTCACACTCTAAGCTCAAGTCAAAACCATTGTACCAATTGTGCCCATGCACT
TGTACTACATGATCTCTAATGTATTGTGCTACTGTAGGTGGGAGACTCATACGAGCAGCAGCAGCAACAGCAACCGTGGA
GCTACCAAGACACGGGCATGAACGGGGGCGCGAGGCCGGCGGAGTTCACCACGCAATTCGAGCCGCCGACCACGTCGACC
ATCATGGCGACGACGGCACCTGACGCGCTCGGGAACGGCGGCTACAGCGTCCCGGCGCCGTCGGGGGCGGCCGGGTACCG
CGTGCAGAGCCGGCGGCCGTCGTCGGACGACGGCTACAACTGGCGCAAGTACGGGCAGAAGCAGATGAAGGGGAGCGAGA
ACCCGCGCAGCTACTACAAGTGCTCCTTCGCCGGCTGCCCCACCAAGAAGAAGGTGGAGCAGGCGCCCGACGGCCAGGTC
ACCGAGATCGTGTACAAGGGCACACACAACCACCCCAAGCCGCAGAACCCGCGCCGGGGCTCCGGCTCGGCGGTGTCGTC
GTCGTACGCGCTGCAGTGCCATGGGGCCAACGACGCGTCGAGCGACGCGCTCTCCGG---------CACGCCCGAGAACT
CGTCGGCGTCCTACGGGGACGACGAGACGAACGGCGTGAGCTCAAGGCCTGCCGGAGCCGTCGGCGGCGGTGAGGATCAG
TTCGACGACGAGGAGCCTGACTGCAAGAGATGG-----------------------------------------------
---------------------------------------------------------------------------AGGAG
CGACGGCGAGGCGACGATTATGGCCGTCGGCAACCGGACGGTGCGGGAGCCGAGGGTGGTCGTCCAGACGATGAGCGACA
TCGACATCCTCGACGACGGCTACCGGTGGCGCAAGTACGGGCAGAAGGTGGTCAAGGGCAACCCAAACCCGAGGTACGTT
CGAGCTGAAGTTTTACTGAACTTCTTGAGATGAAGTACGAATGTTAGACACGTGTGAGCTGACATGCACGGCTTTGCCTT
TCTCTTTCTCGGCAGGAGCTACTACAAGTGCACGACGCCCAATTGCCCGGTGCGGAAGCACGTGGAGCGCGCGTCGCAGG
ACCTGCGGGCCGTGGTCACCACGTACGAGGGCAAGCACAACCACGACGTGCCGGCCGCGCGCGGGAGCGCCGCCGCAGCA
GCGCGGTACCGCGCTGCGACGCTGCAGCCGGCCGCGAGCTACCTGCAGGGCGCCGGCGGCTATTCCAGCCTACGCCCCGA
CGGGTTCGGCGGCGTCGACGGCGGCGGCGCGCCCGCGGAGATGAGCGGGTTCGCGCTGTCCGGGTTCGGCAACCCGTCCT
ACTCGTACGCGAGCATGCAGGAGCAGCAGCAGCA---------GCAACAGAGCGACGCGATGTACTACGACGCCTCGAGG
GCCAAGGACGAGCCGAGGGACGACATGTTCTTCGGCCACTCGTTGATGTTCTGACCGGAGAATTCTCAACGACACCCATC
GGAATCAAGGGGCGAGGAAACTGGGTAAATTAAATAGGGATCTTGTTCTTCTTTTC---TTTTTGGACTGTGTGTGGATA
GGTCTCCGGTCAGGTTAGTTCA-TTTTTTTGGAGGCCCGGACATGGACATGACTGCCAGAATGGTGGTGGCACATGGCCT
CCATTTAACACATTGCACAAGCAAGAT-------------TAGTAGCATAGGGAATAAAGAAAGTAGAGGA-AGTCCATT
GTTTTTTTTTGGCAGTTTCA-CTGGCTGCCTTTTGTTCTTAGTGAAAATTTGTTGTAATCA---TATTAATTTTA-----
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>chr3B_2254
GGCG----------------------------------------------------------------------------
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------------------GTCGTCGGACGACGGGTACAACTGGCGCAAGTACGGGCAGAAGCAGGTGAAGGGGAGCGAGA
ACCCCCGCAGCTACTACAAGTGCACCTTCCCCAACTGCCCCACCAAGAAGAAGGTGGAGACGTCGCTGGAGGGCCAGATC
ACCGAGATCGTGTACAAGGGCACGCACAACCACGCCAAGCCGCTCAACACGCGCAGGGGCTCCGGCGGCGGCGCGGCGGC
G------GCCCAGGTGCTGCAGATCGGCGGCGACGCGTCTGAGAATTCCTTCGGAGGGATGGTCACCACGCCCGAGAACT
CGTCGGCGTCCTTCGGGGACGACGACA---ACGGTGTAAGCTCGCCGCGCTCTGGCAACGTCGGCCGTAACGACAA----
--CGACGATGATGAGCCGGATTCCAAGAGGTGGGTACCAACTTCAACTTGTACTTCG---ATTTTTCTGGATCCAACGTG
TATATGTACGAGTTGCATTGTTGGAGGAACAGAGGAAATTAACCTGCTACCGGCCAAATTTTCAGGAGGAGAGACAGTGG
TGACGGCGAGGGAATAAACATGGCCG---GCAACCGTACGGTGCGGGAGCCGAGGGTGGTCGTCCAGACCATGAGCGACA
TCGACATCCTCGACGACGGCTACCGGTGGAGGAAGTACGGGCAGAAGGTGGTGAAGGGCAACCCGAACCCGC--------
--------------------------------------------------------------------------------
--------------GGAGCTACTACAAGTGCACCACGGTGGGGTGCCCCGTGCGGAAGCACGTGGAGCGCGCGTCCCACG
ACCTGCGCGCCGTGATCACCACGTACGAGGGCAAGCACAACCACGACGTGCC----------------------------
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-----------------------------------------------------------------------
>chr3D_2254
GGCG----------------------------------------------------------------------------
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------------------GTCGTCGGACGACGGGTACAACTGGCGCAAGTACGGGCAGAAGCAGGTGAAGGGGAGCGAGA
ACCCCCGCAGCTACTACAAGTGCACCTTCCCCAACTGCCCCACCAAGAAGAAGGTGGAGACGTCGCTGGAGGGCCAGATC
ACCGAGATCGTCTACAAGGGCACGCACAACCACGCCAAGCCGCTCAACACGCGCCGGGGCTCCGGCGGCGGCGCGGCCGC
G------GCTCAGGTGCTGCAGAGCGGCGGCGACGCGTCCGAGAATTCCTTCGGCGCGATCGTCACGACGCCCGAGAACT
CGTCGGCGTCCTTCGGGGACGACGACAACAACGGCGTGAGCTCGCCGCGGGCTGGC------------AACGACAA----
--CGACGATGATGAGCCGGATTCCAAGAGGTGAGCGCCGAA------TTGTACTTTAAATATATTTTTGGATTCAATGTG
--TATGTACGAGTTGCATTCTTGGAGGAACAGGGGAAATTAACCTGCTATCGGCCAAATTTTCAGGAGGAAAGACGGTGG
TGACGGCGAGGGAATCAACATGGCCG---GCAACCGGACGGTGCGGGAGCCGAGGGTGGTCGTCCAGACCATGAGCGACA
TCGACATCCTCGACGACGGGTACCGGTGGAGGAAGTACGGGCAGAAGGTGGTGAAGGGCAACCCGAACCCGC--------
--------------------------------------------------------------------------------
--------------GCAGCTACTACAAGTGCACCACCGTGGGGTGCCCCGTGCGGAAGCACGTGGAGCGCGCGTCCCACG
ACCTGCGCGCCGTGATCACCACGTACGAGGGCAAGCACAACCACGACGTGCCGGCCGCCAGGGGGAGCGCCGC-------
--------------------------------------------------------------------------------
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>chr3A_2254
GGCG----------------------------------------------------------------------------
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------------------GTCGTCGGACGACGGGTACAACTGGCGCAAGTACGGGCAGAAGCAGGTGAAGGGGAGCGAGA
ACCCCCGCAGCTACTACAAGTGCACCTTCCCCAACTGCCCCACCAAGAAGAAGGTGGAGACCTCCCTGGAGGGCCAGATC
ACCGAGATCGTCTACAAGGGCACGCACAACCACGCCAAGCCGCTCAACACGCGCAGGGGCTCCGGCGGCGGCGCGGCCGC
G------GCCCAGGTGCTGCAGAGCGGCGGCGACGCGTCCGAGAATTCCTTCGGAGGGATGGTCACCACGCCCGAGAACT
CCTCGGCGTCCTTCGGGGACGACGAGA---ACGGTGTAAGCTCGCCGCGGTCTGGCAACGTCGGCCGTAACGACAA----
--CGACGATGATGAGCCGGATTCCAAGAGGTGAGCACCGATTCAT-------------------------ATCCCATGTG
--TACATGCGAGTTGCATTCTTGGAGGAACAGAGGAAATTAACCTGCTATCGGCAAAAATTTCAGGAGGAGAGACGGTGG
TGACGGCGAGGGAATGAACATGGCCG---GCAACCGGACGGTGCGGGAGCCGAGGGTGGTCGTCCAGACCATGAGCGACA
TCGACATCCTCGACGACGGGTACCGGTGGAGGAAGTACGGGCAGAAGGTGGTGAAGGGCAACCCGAACCCGC--------
--------------------------------------------------------------------------------
--------------GGAGCTATTACAAGTGCACCACGGTGGGGTGCCCCGTGCGGAAGCACGTGGAGCGCGCGTCCCACG
ACCTGCGCGCGGTGATCACCACGTACGAGGGCAAGCACAACCACGACGTGCCGGCCGCCAGGGGGAGCGCCGC-------
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-----------------------------------------------------------------------
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------S----------S----S-S-S-SSS-----S---S--SS----S-----
-------------------S-SSSSSS----S-----------S-S-S-S----------------S-------------
----S--S------------------------------------------------------------------------
-----------------------------------S-S---S-------------S---S--------------------
---------SSSSSS------------S----------------------------------------------------
--------------------------SS----------------------------------------------------
--------------------------S-----------------------S-----------------------------
-----------------------------------------------------SSS------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------S-----------------------
-------------------------S------------------------------------------------------
------------SSS-----S-----------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------SS-------------S-------S-S--S-------------------------------S---S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S--------------------------------------------S
----------------S---------------------------------------------------------------
----S-----------------------------------------S-----------------------------S---
-------------------------------------S-----------------------------------S------
--------------------S---------------------------S-------------------------------
----------------------------------------S---------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-----------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------S---------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S-----------S------------
--S-----------------------S-----------------------------------------------------
---------------------------------------------------------------------------S----
--------S-----------------------------------------------------------------------
-------------------------------------------S---------------S--------------------
---------------------------------------------------------S----------------------
-------------------------------------------S------------------------------------
------------------------------------------------------------S-S-S-S-------------
S----------S---------S------------------S---------S------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_35
---------------GAAAGCATGGAAGGGACCGA---------------------------------------------
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-----------------------------------------------------------------------
>reverse_1697
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAGATAGACGACCCCGGCTT--------------------------------------------
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-----------------------------------------------------------------------
>forward_98
------------------------------------------------------------------------------AC
CGTGCGACAAGACCATAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_2369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------GTACGAGCAGCAGCAGCAA-------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>forward_2278
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------AGTCAACGCTGTCACACTCC------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_4222
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------ACTGCCAGTATGTATCCGC
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
