>input_sequence_29321
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--------------ACGCT---ACCCACATTTCGCATCGCACACTGACACTGGGCACGTGGCCACCATGGTGTCGTCAGT
CACCCTGGCAAGGAAATCCCAGTCGTTCGTCGTGCCGGCCGCGCCGGCGTCGGGAGAGACGCTGGAGCTGTCCGCCATCG
ACCGCGTGCCCGGGCTGCGCCACACCGTGCGGTCACTGCACGTGTTCCGGCGCAACGGC---------GCCGACAGCGCC
AGGCCGGCCGAGGTGATCCGCGCCGCGCTGTCGCGCGCGCTGGTGGAGTACCCCGCGTTCGCCGGCCGCTTCGTGGGATC
GGCGGCGGCTGGCGAGGCCTGCGTTGCGTGCACCGGCGACGGCGCTTGGTTCGTTGAGGCCGCCGCCGACTGCAGCCTGG
AGGACGTGAACGGCCTGGACTACCCTCTCGTGGTCTGCGAGGAGGAGCTGCTGCCCGCTCCGGAGGAAGGCGTTGACCCT
ACCACTATTCCGGTCATGATGCAGGTATATACGTACGGTTACATCATATTTTCGTTACTGCTTCTTCCGTTTTAAATTAC
TCGTCGTGGTTTTAGTTCAAGTGCCTCTGTTCCTTTTTATGAGACGTTTTAGACATTCAGATACTGTTTAAAACAGTATT
CCCTTCATTCGAAAAAGCTTGTCTCTCAAATGAATATATCTAGCATAAAGTTAGTGTTAGATACATTCATTTGAAATATA
CTAGATACATTCATTTGAGAGACAAGTTTGGGACAAGTTTTTTCGGATAAAGAGAGTAAAAAAAACTATCTGAAACGTCT
TATAAAAACAAACAAAGGAAGTACATGAGTCCGAGGCTCCTTGCAGAAAATGTTTA----------GGCATCTGCAGTCC
GCATCTTTCATTCATTTTCGCATTTTCTTGTGTGCGATTATCAAAGGCAGTAAGCGAGCATCAACTTATTCAAGTCACCA
ACAACATATATTTATACATAGTCCGATCGGGTA-TAGTATATTTAGATCAGGCTGCCAATTTCCGCCCGTTTATTCTTAA
GC--ATGCTCGTCCGTATTAGTAAACGTTTTAAGCTTAAAAACAGGGGCATGGACATTTTAAGCAGGGAGAGAGAGCAAC
CCACCACATCGAGAAACCATCGCCATGAATTAGT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGGGCGTCTGAAGTCATGAAGTCAGGAAGAAAGA
ATATGTTGACCTCAAGAAACC-----------------------------------------------ACATGTTGTTTC
CTATTTTTTTCC-CAATATAGATGTTGTTTCAAGACAGTATTTCTAATGGATTCATTTCTCGGACTAGTGTAGGTCAAGA
-----------CCCTTTTTTGCGACCAGAGAGAGTAGCTCCAAAATGAACCAAGACTACGTATCAGAGTGGTTGAACTGT
AACACATATGTATG------------------------------------------------ATACACTAACTAGGTGGA
ACTGTACCACATCCCCCTCTTTTTTAGGATACATCGCGTTGTTGGTAGTGGAAGATAGAAAGTGCCGGCA----------
------------GCACCGACACGTCACAATGGTTTAGGTAGTCTACTACTACAGCCTGACTG-TATTTGTCTCTTCACTG
ACTCAAATTCCATACAACCACTTCATCTGAATAACAATATCGAATGTCATGGTTTCAGGACTCTATATTGCAAACTTTTT
-CCTTGTCATTTTAACTGATGTTTCAAGACTGATATTGCAT---------------------------------------
----------------------------TACCTTTCTCGTTCTAACTCTGTCCATGC----CAGGTGACCGAATTCACTT
GTGGAGGATTTGTTGTGGGCTTGGTAGCGGTCCACACCCTCACAGACGGGCTTGGCGCAGCACAATTCATCAACACAATT
GCTGAGTTAGCCCGCGGTCTGGACAAGCCTACGGTGGCTCCTGCATGGGCTCGGGCTGTAATCCCAAGCCCACCCAAGTT
ACCTCCAGGGCCACCGCCATCGTTCCAGTCCTTCGGCTTCCAGCATTTCGCCACAGATGTTAGCTCAGAGTGTATCGCCC
ATGTCAAGGTCGAATACTTCCAAGCAATGGGTCAGTATTGCTCAACTTTTGATGTCGCCATTGCAATGGTTTGGCAAGCT
CGAACTCGGGCCATCAAGTACAGTCCAGAATCCGAGGTCAAAATATGCTTCTTCGCAAACACCAGACACCTTCTCACACA
AGTTCTCCCAAAGGATGGGGGCTTCTACGGCAACTGCTTCTACCCGGTTACCGTGACATCTATGGCGAAGGATGTTGCCA
TGATGGGGCTGCTTGGTGTGATCAGGATGATTAGGGACGGGAAGGCAAGGCTCCCTTTGGAGTTTGCCAAGTGGGCGTCA
GGGGATGTGAAGATTGATCCATACCAGTTGGCGTTCGAGCACAATGTGCTATTTGTGTCGGATTGGACGAGGCTTGGATT
CTTTGAGGTCGACTACGGGTGGGGCACTCCTAGCCATATCTTACCATTTACCTATGCAGATTACATGGCGGTCGTGGTGC
TTGGTGCTCCGCCAATGCCCAAGAAGGGCACACGAGTTATGACCCAGTGTGTGGAGGAGAAGTATCTCAATGAGTTCAAG
GATGAGATGAAGGGTTTCTTTTAAAAGCCTAGTTGTTATCATATCAATGGCATGAGTGGATGTTGGGTTTGGATAAAAAA
ATTGGA----------GCATGAGGAAATACTACACTTGCGATGTTGGGAAAAGTAACAAATAATATTGTCGCACAACTAT
CCATGTAATTCAGGGGGTGGGCTAATATATGGACAACTGCTCAATAAAGTTTGTGAAAGTAC------------------
--------------------------------------------------------------------------------
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----------------------
>chr3A_1_TraesCS3A01G251800
GTAAATCCAGTCAGTGCATGGATAC----TAGCCTAATGCCATTAACCAATCCATTTCCATCTTGTGACCATTGCACG--
----TAAAACTATGATGACGAACTTGTGACTGTACTGTAGCTCACCTATGGTGCCGAGACCGGCCATTGTGATGGCAATC
CAATCAAGGCCATTCATGACCTCCTTGAGGTAAAAATGGGAGAAGACGCAGAGTATGGCGAGGCCGCAGCCGGCAATCGG
CTGCACGACAGAGACCTGATGAGAAAAAA-CAAACGCCGCATCAGTCATCATGCGGCATCCTAC----------------
------TAATCGGGCGAGAAGAGAAACACAAGGGAGTTGGGAAGCAGGCAACGCACCGGCGCCTGCGAGAGCGCGGTGAG
CATGAGGGCGGCGCCGCACATGTCGAGGAGGAAGCCGCTGATCCAGAGCCTGTTGAGCGCGTAGCCCCGTATGACCTGCA
CAAGACCGAAGAGGGCGGCGTCATCCATCTAACA-----GTAAGCAGCAGCGCCGGCAACCGGAAGGGATGGATAAGGGG
GCA------GGGAGGGGAGAG---GGGTGCCTTGAGCTTGAAGGAGAGGGGCGGGAGGATGAGGGTGCCCTTCTTCTGGA
GCACCTTGCCGATGCTGTTGCCGGCGGCGCCGGCCAGCGTGAGCGCCACCGACTCCCACATCCCCGATCCGATCCGGCAC
CAGGCGCGCGCGTGGGGGGTTTCCCTGGAGCTTTTTGGGTGTGGGAGGGCCGAGGAGAAGACCACGAGTGGGAGGAGCCG
AGGAGGTGGCCGGGTGGCGTCCTTTTCTCGTCGTGTCGTGCGCCCCCGTGCCCGAGCGTGGGTGCCGCCGGTGGCG----
--CTCTCGTTGGTGCCTGGGTCGCGTCGCGTGTGCGGGAGGGATGCTCCATTTTTTTATTCTATTGTCTCTGCTTTTGGG
CTTTGCAAGCTTGGATGGGCTGCCGCTCGTACATTCAGCCCAGCCCAGACTTCGGCGTTTATAAATACGCATCCCGT-GC
TGTCTCGAAGCCTCACGCT---ACCCACATTTCGCATCGCACACTGACACTGGGCACGTGGCCACCATGGTGTCGTCAGT
CACCCTGGCAAGGAAATCCCAGTCGTTCGTCGTGCCGGCCGCGCCGGCGTCGGGAGAGACGCTGGAGCTGTCCGCCATCG
ACCGCGTGCCCGGGCTGCGCCACACCGTGCGGTCACTGCACGTGTTCCGGCGCAACGGC---------GCCGACAGCGCC
AGGCCGGCCGAGGTGATCCGCGCCGCGCTGTCGCGCGCGCTGGTGGAGTACCCCGCGTTCGCCGGCCGCTTCGTGGGATC
GGCGGCGGCTGGCGAGGCCTGCGTTGCGTGCACCGGCGACGGCGCTTGGTTCGTTGAGGCCGCCGCCGACTGCAGCCTGG
AGGACGTGAACGGCCTGGACTACCCTCTCGTGGTCTGCGAGGAGGAGCTGCTGCCCGCTCCGGAGGAAGGCGTTGACCCT
ACCACTATTCCGGTCATGATGCAGGTATATACGTACGGTTACATCATATTTTCGTTACTGCTTCTTCCGTTTTAAATTAC
TCGTCGTGGTTTTAGTTCAAGTGCCTCTGTTCCTTTTTATGAGACGTTTTAGACATTCAGATACTGTTTAAAACAGTATT
CCCTTCATTCGAAAAAGCTTGTCTCTCAAATGAATATATCTAGCATAAAGTTAGTGTTAGATACATTCATTTGAAATATA
CTAGATACATTCATTTGAGAGACAAGTTTGGGACAAGTTTTTTCGGATAAAGAGAGTAAAAAAAACTATCTGAAACGTCT
TATAAAAACAAACAAAGGAAGTACATGAGTCCGAGGCTCCTTGCAGAAAATGTTTA----------GGCATCTGCAGTCC
GCATCTTTCATTCATTTTCGCATTTTCTTGTGTGCGATTATCAAAGGCAGTAAGCGAGCATCAACTTATTCAAGTCACCA
ACAACATATATTTATACATAGTCCGATCGGGTA-TAGTATATTTAGATCAGGCTGCCAATTTCCGCCCGTTTATTCTTAA
GC--ATGCTCGTCCGTATTAGTAAACGTTTTAAGCTTAAAAACAGGGGCATGGACATTTTAAGCAGGGAGAGAGAGCAAC
CCACCACATCGAGAAACCATCGCCATGAATTAGT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGGGCGTCTGAAGTCATGAAGTCAGGAAGAAAGA
ATATGTTGACCTCAAGAAACC-----------------------------------------------ACATGTTGTTTC
CTATTTTTTTCC-CAATATAGATGTTGTTTCAAGACAGTATTTCTAATGGATTCATTTCTCGGACTAGTGTAGGTCAAGA
-----------CCCTTTTTTGCGACCAGAGAGAGTAGCTCCAAAATGAACCAAGACTACGTATCAGAGTGGTTGAACTGT
AACACATATGTATG------------------------------------------------ATACACTAACTAGGTGGA
ACTGTACCACATCCCCCTCTTTTTTAGGATACATCGCGTTGTTGGTAGTGGAAGATAGAAAGTGCCGGCA----------
------------GCACCGACACGTCACAATGGTTTAGGTAGTCTACTACTACAGCCTGACTG-TATTTGTCTCTTCACTG
ACTCAAATTCCATACAACCACTTCATCTGAATAACAATATCGAATGTCATGGTTTCAGGACTCTATATTGCAAACTTTTT
-CCTTGTCATTTTAACTGATGTTTCAAGACTGATATTGCAT---------------------------------------
----------------------------TACCTTTCTCGTTCTAACTCTGTCCATGC----CAGGTGACCGAATTCACTT
GTGGAGGATTTGTTGTGGGCTTGGTAGCGGTCCACACCCTCACAGACGGGCTTGGCGCAGCACAATTCATCAACACAATT
GCTGAGTTAGCCCGCGGTCTGGACAAGCCTACGGTGGCTCCTGCATGGGCTCGGGCTGTAATCCCAAGCCCACCCAAGTT
ACCTCCAGGGCCACCGCCATCGTTCCAGTCCTTCGGCTTCCAGCATTTCGCCACAGATGTTAGCTCAGAGTGTATCGCCC
ATGTCAAGGTCGAATACTTCCAAGCAATGGGTCAGTATTGCTCAACTTTTGATGTCGCCATTGCAATGGTTTGGCAAGCT
CGAACTCGGGCCATCAAGTACAGTCCAGAATCCGAGGTCAAAATATGCTTCTTCGCAAACACCAGACACCTTCTCACACA
AGTTCTCCCAAAGGATGGGGGCTTCTACGGCAACTGCTTCTACCCGGTTACCGTGACATCTATGGCGAAGGATGTTGCCA
TGATGGGGCTGCTTGGTGTGATCAGGATGATTAGGGACGGGAAGGCAAGGCTCCCTTTGGAGTTTGCCAAGTGGGCGTCA
GGGGATGTGAAGATTGATCCATACCAGTTGGCGTTCGAGCACAATGTGCTATTTGTGTCGGATTGGACGAGGCTTGGATT
CTTTGAGGTCGACTACGGGTGGGGCACTCCTAGCCATATCTTACCATTTACCTATGCAGATTACATGGCGGTCGTGGTGC
TTGGTGCTCCGCCAATGCCCAAGAAGGGCACACGAGTTATGACCCAGTGTGTGGAGGAGAAGTATCTCAATGAGTTCAAG
GATGAGATGAAGGGTTTCTTTTAAAAGCCTAGTTGTTATCATATCAATGGCATGAGTGGATGTTGGGTTTGGATAAAAAA
ATTGGA----------GCATGAGGAAATACTACACTTGCGATGTTGGGAAAAGTAACAAATAATATTGTCGCACAACTAT
CCATGTAATTCAGGGGGTGGGCTAATATATGGACAACTGCTCAATAAAGTTTGTGAAAGTACATTGTGCCCTTTAATTGT
TGATTTTGTATTGATGACGACAAATTAGTGGGACTAATATTGCATGCTAATTGATGATACCAAAAACCGTTAGTGTCCTC
GGTAGGGTGGAGAACGTGACCAAATGTACCAGAGGGGATCACACACGGTTTTTTTGTATTGATGACAACAAATTAGTAGG
ACTAATATTGCACGCTAATTGATGATACCAAAAAATGTCAGTGTCCTCGGCAGGGTGGAGAACGTGACCGAATGTACCCG
AGGGGATCACAGACGGAGTTTTACCCAGGTTCGGACCCTCATGGTCAAGATAATACCCTACTCCTGCTTTGTTTTTTTAT
TGATGGTTCGTGTGAGGGGGTTACAAATTGAAGGTAGTGATAGCTACCGAGGTTTAAGTTATTCATCAGGTGTCGTCCAA
TCTACACCCCCCCCCCCCGCCCGCCTTATAAAGGAGGGGGTGAGAACTAGGGTTTACATGTGAAAGTGCGTTATATCGAC
TAGAGGGAGGGTGAATAGGCGATTTTTACAAATTCGTCACTAAAGAATTTCTAGGTGAGGAAATTCCTAAGCAACAAACT
ACTTAGCAGCAGAATAAGTACTCAGATGCATGCATAACAGAACAGAAGCACAGTCATTATGATGAAATGAAAACAAGCAC
AGAGTACAAGTAGCGTATAAACAGGACAAGCAGGCTGAAGACAACCTGACTGGAAAAATAGGATTATGGAAATTGAGAAA
GTCTTCAGTCAAAGTCTTCAAACAGTAACGATCAAGTACTTCAATACAAGAATGACGAAATGAAAGGATTGAGGAAATAG
AACCAGTAGCTTGGTGAAGACGATGATTTGGTAGACCAGTTCCAACTATAGCTGGCCAAATGGGCCGGCCCGGCCCGGCC
CATCCTAATCGTGTCTGGCACAACCCGGCCCGCCGAGGCACGATTATTATACGGGCCGTGTCATGCCAGCCCGCGTGCTG
CAGCCTTCAGCCCAGGCACGAC
>chr3B_1
GTAAATCCAGTCAGTGCATGGATACATGCTAGCCTAATGCCATTAACCAATCCATTTCCATCTTGTGACCATTGCACGTA
AAACTAAAACTATGATGACGAACTTGTAACTGTACTGTAGCTCACCTATGGTGCCGAGACCGGCCATTGTGATGGCAAGC
CAATCAAGGCCATTCATGACCTCCTTGAGGTAAAAATGGGAGAAGACGCAGAGTATGGCGAGGCCGCAGCCGGCAATCGG
CTGCACGACAGAGACCTGATGAGAAAAAAACAAAGGCCGCATCAGTCAACATGCGGCATCCTAATAAGGCAGTGAGTAAC
TGCGCGTAATCGGGCGAGAAGAGAAACAGAAGGGAATGGGGAAGCAGGCAACGCACCGGCGCCTGCGAGAGCGCAGTGAG
CATGAGGGCGGCGCCGCACATGTCCAGGAGGAAGCCGCTGATCCAGAGCCTGTTGAGCGCGTAGCCCCGTATGACCTGCA
CAAGAGCGAAGAGGGCGGCGTCATCTATCTAACA----AGTAAAGAGCGGCGCCAGCATCCGGAAGGGATGGATAAGGGG
AGGGAGG-----------GAG---GGGTGCCTTGAGCTTGAAGGAGAGGGGCGGGAGGATGTGGGTGCCCTTCTTCTGGA
GGACCTTGCCGATGCTGTTGCCGGCGGCGCCGGCCAGCGTGAGCGCCACCGACTCCCACATCCCCGATCCGATCCGGCAC
CAGGCGCGCGCGTGGGGG-TTTCCCTAGAGCTTTTTGGGTGTGGGAGGGCGGAGGAGGAGACCACGAGGGGAGGGGGAGG
AGAGGA------GGTGGCGTCCTTTTCTCGTCGTGTCGTGCGCCCCCGTGCCCGAGCGTGGGTGCCGCCGGTGGTG----
--CTCTCGTTGGTGCCTGGGTCGCGTCGCGTGTGCGGGAGGGATGCTCCCATTATTCTATTG--TGTCTCTGCTTTGGGC
TTTTGCAAGCTTGGATGGGTTGCCGCTCGTACATTCAGCCCAGCCCAGACTTCGGCGTTTATAAATACGCATCCCGT-GC
TGCCTCGAAGGCTCACACT---ACCCACATTTCGCACCACACATTGACACTGGGCACGTAGCCACCATGTTGTCATCAAT
CACCCTGGCAAGGAAATCCCAGTCGTTCGTCGTGCCGGCCGCGCCGGCGTCGGGAGAGACGCTGGAGCTGTCCGCCATCG
ACCACGTGCCCGGGCTGCGCCACACCGTGCGGTCTCTGCACGTGTTCCGGCGCAACGGCGACCGCAGCGCCGACGGCGCC
AGGCCGGCCGAGGTGATCCGCGCCGCGCTGTCGCGCGCGCTGGTGGAGTACCCCGCGTTCGCCGGCCGCTTCGTGGGCTC
GGTGGCGGCTGGCGAGGCCTGCGTTGCGTGCACCGGCGACGGCGCTTGGTTCGTTGAGGCCGCCGCCGGCTGCAGCCTGG
AGGACGTGAACGGCCTGGACTACCCGCTCATGGTCTGCGAGGAGGAGCTGCTGCCCGCTCCGGAGGAAGGTGTTGATCCT
ACCACTATTCCGGTCATGATGCAGGTATATACGTACG--TACATCATATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TACATGAGTTCGAGGCTCCTTGCAGAAAACGTTTACTAGGCAATAGGCATTCGCAGTCC
GCATCTTTCATCCATTTCA-CATTTTCTTGTCTGCGATGATCAAAGGCAGTAAGCGAACATCAACTTATTCAAGCCACCA
ACAACATATATTTATACATATTCGGATCGGGTATTAGTATATTTACCTCATGCTGCCAATTTCCGTCCGTTTTTTCTTAA
GCAAATGCTCGTCCGTATTAGTAAACGTTTTAAGCTAAAAAAAGGGGGCATGGACATTTCAAGCAGGGAGAGAGAGCAGC
CCACCACATTAAGAAACCATCGCCATGAATTAGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGGACGTC--------TGAAGTCAGGAAGAAAAA
ATAGGCAGACCTCAAGAAACC-----------------------------------------------ACATGTTGTTTC
CTTTTTTTTTCCGCAATATAGATGTTGTTTCAAGACAGTATTTCTAATGGATTCATTTCTCAGAGCAGTGC---------
-----------------------------------AGCTCCCAAATGAACCAAGACTACATATCAGAGTGGTTGAACTGT
AACACA----TATG------------------------------------------------ATACACTAACTAGGTGGA
ACTGTACCACATCCCT---TTTTTTAGGATACATCGCGTTGTTGGTAATGGAAGATAGAAAGTGCCGGCACCACATATTT
CTAACAACTGAAGCACCGACACGTCACAATGGTTTAGGTAGTCTACTACTACTGCCTGACTG-TATTTGTCTCTTCACTG
ACTCAAGTTCCATACAACCACTTCATCTGAATAACAATAACGAATGTCAAGGTTTCAGGCCTG-ATATTGCAAACTTTCT
ACCTTGTCATTTTAACCGATGTTGCATGCACGGGTGTTGACATGTTGCATGTTTGCAAACTAGATTTTTTTTGGGAGCAA
AATGTTTGCAAACTAGATGTATTCATTATACCTTTCTCGTTCTAACTCTCTATGTGCATAGCAGGTGACCGAATTCACTT
GTGGAGGATTTGTTGTGGGCTTGGTAGCGGTCCACACCCTCGCAGACGGGCTTGGTGCTGCACAATTCATCAATGCAATT
GCTGAGTTAGCGCGTGGCCTGGACAGGCCTACGGTGGCTCCTGTATGGGCTCGGGCTGTAATCCCGAACCCACCCAAGTT
ACCTCAGGGGCCACCACCATCATTCCAGTCATTCGGCTTCCAGCATTTCGCCACAGATGTCAGCGCGGACTGTATCGCCC
ATGTCAAGGCCGAATACTTCCAGGTAATGGGTCAGTACTGCTCAACTTTCGATGTCGCCATTGCAAAGGTTTGGCAAGCT
CGAACTCGGGCCATCAAGTACAGTCCAGAAGCCGAGGTCAAAATATGCTTCTTCGCAAACACCAGACACCTTCTCACACA
TGTTCTCCCAAAGGATGGGGGCTTCTATGGCAACTGCTTCTACCCGGTTACCGTGACGTCTACAGCGAAGGATGTTGCCA
CGGCGGGGCTGCTTGGTGTGATCAGGATGATTAGGGACGGGAAGGCAAGGCTAACTTTGGAGTTTGCCAAGTGGGCATCA
GGGGATGTGAAGATTGATCCATACCAGTTGACGTTCGAGCACAATGTGCTATTTGTCTCGGACTGGACAAGGCTTGGATT
CTTTGAGGTCGACTATGGGTGGGGCGCCCCTAGCCATATCATACCATTCAACTACGCACATTACATGGCGGTCGCGGTGC
TTGGTGCTCCACCAATGCAGAAGAAGGGCACCCGGGTTATGACCCAGTGTGTGGAGGAAAAGCATCTCAATGAGTTCAGG
AATGAGATGAAGGGTTTCTTTTAAAAGTCTAGTTGTTATCATATCAATGGCATGTGTGGATGCTGGGTTTGGATAAATTT
GTGGCAATCT--GGAGGCATGAGTAAATACTACACTTGCAATGTTGTGAAAAGTAACAAATAATATTGTCGCACAACTAT
CCATGTAATTCAGGGGTTTGGCTAATATATGGATGACTGCCCAATAAAGTTTGTGAAAGTGTAGTGTGCCATTTAATTGT
TGATTTGATATTGATGACGACAAATTAGTGGGACTAATATTACACGCTAATTGACGATGTCTAAAACCGTGAGTGTCTCG
GTAGGGGTGGAGAGTGTGACC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr3D_47
--------------------------------------------------TCCATTTCCATCATGTCAATATTGAATGTA
AAACGTGATGATCGTGGCGTAGTGACT--------TGTAGCTCACCTATGGTGCCGAGACCAGCCATTGTGATGGCAATC
CAATCGAGGCCATTCATGACCTCCTTGAGGTAAAAGTGGGAGAAAACGCAGAGTATGGCGAGGCCGCAGCCGGCAATCGG
CTGCACGACAGAGACCTGATGAGAAAAAA-CAAACGCCGCATCAGCC---------------------------------
--------ATCGGGCGAGAAGAGAAACACAAGGGAGTCGGGAAGCAGGCAACGCACCGGCGCCTGCGAGAGCGCGGTGAG
CATGAGGGCGGCGCCGCACATGTCGAGGAGGAAGCCGCTGATCCAGAGCCTGTTGAGCGCGTAGCCCCGTATGACCTGCA
CAAGACCGAAGAGGGCGGCGTCATCTATCTAACACAGTAGTAAACAGCAGCGCCGGCATCCGGAAGGGATGGGTAAGGGG
ATGGATAAGGGGAGGGGAGTGGGAGGGTGCCTTGAGCTTGAAGGAGAGGGGAGGGAGGATGTGGGTGCCCTTCTTCTGGA
GGACCTTGCCGATGCTGTTGCCGGCGGCGCCGGCCAGCGTGAGCGCCACCGACTCCCACATCCCCGATCCGATCCGGCAC
CAGGA-----------GG-TTTCCCTAGAGCTTTTTGGGTGTGGG----CGGAGGAGGAGACCACGAGGGGGAGGAGCCG
AGGAGGTGGCCGGGTGGCGTCCTTTTCTCGTCGTGTCGTGCGCCCCCGTGCCCGAGCGTGGGTGCCGCCGGTGGTGCGTG
CTCTCTCGTTGGTGCCTGGGTCGCGTCGCGTGTGCGGGAGGGATACTCCATTTTTTTATTCTATTGTCTCTGCTTTTGGG
CTTTGCGAGCTTGGATGGGCTGCCGCTCGTACATTCAGCCCAGCCCAGACTTCGGCGTTTATAAATACGCATCCCGTTGC
TGTCTCGAAGGCTCACACACTAACCCACATCTCGCATCACACACTGACACTGGGCACGTGGCCACCATGGTGCCATCAAT
CACCCTGGCAAGGAAATCCCAGTCGTTCGTCGTGCCGGCCGCGCCGGCGTCGGGAGAGACACTGGAGCTGTCCGCCATCG
ACCGCGTGCCCGGGCTGCGCCACACCGTGCGGTCCCTGCACGTGTTCCGGCGCAACGGCGACCGCCGCGCCGACGGAGCC
GGGCCGGCCGAGGTGATCCGCGCCGCGCTGTCGCGCGCGCTGGTGGAGTACCCCGCGTTCGCCGGCCGCTTCGTGGGATC
GGTGGCGGCTGGCGAGGCCTGCGTTGCGTGCACCGGCAACGGCGCTTGGTTCGTTGAGGCCGCCGCCGACTGCAGCCTCG
AGGACGTGAACGGCCTGGACTACCCGCTCATGGTCTGCGAGGAGGATCTGCTGCCCGCTCCGGAGGAAGGCGTTGACCCT
ACCACTATTCCGGTCATGATGCAGGTATATACGGA-G--TACATCATATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TACATGAGTTCGAGGCTCCTTGCAGAAAACGTTTAC-------TAGGCATTCGCAGTCC
GCATCTTTCATCCATTTCA-CATTTTCTTGTGTGCCATGATCAAAGGCAATGAGCGAACATCAACTTATTCAAGCCACCA
ACAACATATATTTCCCCCTCAAAAAAAAACCAACAACATATATTTTTATACGTAC------------------TTATTAA
GCAAATGCTCGTCC------------------------------------------------------------------
------CATGAAGAAACCATCGTCGTGAATTACTTCAGCAACCACCAATGCACAGAAAAGCACTCAATATGAGGGGTTGC
TAGTTGACCTTTCCCCTATGAAAAATATTGGATTTGGTAGCATAAATAGAGTGCGACGAAGTGCTAGCCTTCTACATCCC
GAGATAATATTATAGTAGTATTTTTTTGGCAAAAAATATATGATCAAATCTATTATAAAAGTTCACTGTAAGTACAAAGC
ATCTCGCACTCACCTGGCATGTGTACGTACCACCCGGTCGAGGATCAGGGCGTC--------TGAAGTTAGGAAGAAAGA
ATATAGGTAGACCTCTGAAGTCAGGAAGAACGTCGGTGAACAATATTTGAAGAGACAAATCATGCTTTACATGTTGTTTC
CCTTTATTTGCCGCAATATGGATGTTGTTTCAGGACAGTATTTCTAATGGATTTATTTCTCAGAACAGTGTATGTCCGCA
CACAGTCAAGGCCCTTTTTTGCGAACAGAGAGAGTAGCTCCCAAATGAACCAAGACTATATATCAGAGTGGTTGAACTGT
AACACA----TATCTGTGTAACACATATGCTACACTATTTCACCAAAAATAAAACACATACCATACACTAACTAGGTGGA
ACTGTACCACATCCCT---GTTTTCTGTATTAT----------------------TAGAAAGTGCCGGCACCACATATTT
CTGACAAGTGAAGCACCGACACATCACAATGGTTTAGGTAGTCTACTCCTACTGCCTGCCTACTATTTGTCTCTTCATTG
ACTCAAGTTCCATACAACCACTTCATCTGAATAACAATAACGAATGTCATGGTTTTAGGACTCTATATTGCAAACTTTTT
-CCTTGTCATTTTAACTGATGTTTCAAGACTGATATTGCAT---------------------------------------
----------------------------TACCTTTCTCGTTCTAACTCTGTCCATGC----CAGGTGACTGAATTCACTT
GTGGAGGATTTGTTGTGGGCTTGGTAGCGGTCCACACCCTTGCAGACGGGCTTGGCGCAGCACAATTCGTCAACGCAATT
GCCGAGTTAGCCCGCGGCCTGGACAGGCCTACGGTAGCACATGTATGGGCTCGGGCTGTAATCCCGAGCCCACCCAAGTT
ACCTTCGGGGCCACCACCAACGTTCCAGCCCTTAGGCTTTAAGCATTTCGCCACAGATGTCAGTTCAGATTGTATGGCCC
ATGTCAAGGCTGAATACTTCCAGGCAATGGGTCAGTACTGCTCAACTTTCGATGTCGCCATTGCAAAGGTTTGGCAAGCT
CGAACTCGCGCCATCAAGTACAGTCCACAAGCCGAGGTTAAAATATGCTTCTTCGCAAACACCAGACATCTTCTCACACA
GGTTCTCCCAAAGGATGGGGGCTTCTACGGTAACTGCTTCTACCCGGTTACTGTGACGTCTACAGCGAAGGATGTTGCCA
CGTCAGGACTGCTTGGTGTGATCGGGATGATTAGGGACGGGAAGGCAAGGCTCCCTTTGGAGTTTGCCAAGTGGGCGTCA
GGGGATGTGAAGGTTGATCCATACCAGTTGACATTCCAGCACAATGTGCTATTTGTGTCGGATTGGACGAGGCTTGGATT
CTATGAGGTCGACTACGGGTGGGGCGCCCCTAGCCATATCATACCATTCACATATGCAGATTACATGGCGGTCGCGGTGC
TTGGTGCTCCACCAATGCCGAAGAAGGGCACCCGAATTATGACCCAATGTGTGGAGGAGAAGCATCTAAAGGACTTCAGG
GATGATATGAAGGGCTTATTTTAAATGTCTAGTTGGTATTGTATCAATGGTATGTGTGTATGTTGGGTTTGGATAAATTT
GTGGCAATCTTTGGAGGCATGAGGAAATACTACACTTGAGATGTTGGGAAAAGTAAGAAATAATATTGTTGCACAACTAT
CCATGTAATTCAGGGGTTGGACTAATATATGGACGCTTGCCCAATAAAGTTCGTGAAAGTGTTGTGTGCCCTTTAATTGT
TGATTTGGTATTGATGATGACAAATTAGTGGGACTAATATTTCACGCTAAGTGATGATACCGAAAACCGCCAGTGTCCTC
CGTAGGGTGGAGAGAGTGACTGGATGTACCAAAGGGGATCAGACGAGGTTATTTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>SNPs
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S--------------S----------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-----------------S--------------S---------------------
SSS----------------------------------------------------------S------------------
-S------------------------------------------------------------------------------
------------------S-------S-----------------------S------S----------S-----------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----S---------------------S-----------------------------------S---S-
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------S-----
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-------------------------S---S--------------------------------------------------
-------------------------------------SS-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------S-------------------S--------------------SS-------
-----------S-----SSS------------------S------------------S----------------S-----
--------------------S--S---------------------SS---S--------------S------S-------
------------------------------------S-----SS---------------S------------------S-
---------SS---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------SSSSSSSS------------------
-----SS-------------------------------------------------------------------------
--S----------------------------------------------------------S--SS------S---SSS-
------------------------S----------------S-----------------S--------------------
------SSSS----------------------------------------------------------------------
---------------SSSS----------------------------S--------------------------------
----------------------------------------------------S---------------------------
------S--------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------S-----
-----------------S-------S-----------------S---------------------S--------------
------S--------S--------------------------------------------S--------S----------
---------S------------S--------------S-----------S----------------S-------------
------------------------------S-------------------------------------------------
S--------------------------------------------------------S----SS----------------
S-SS----------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------S-S------------S-------S-------------------------S-----
----------S--------S-----------S------------------------------S---------------S-
---------------------------S--------------------------S----------------------SSS
S-S-S---------------------------------------------------------------------------
----------------S-----------------S-----S-------------------SS-S----------------
------S----------------------------------S--S----------------S--------S---------
-------------SS------SS--------S---------S--SS----S----SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_563
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AAGGGATGGATAAGGGG
GCA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------
>reverse_2159
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
CCACCACATCGAGAAACC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------
>forward_1079
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GCTACCCACATTTCGCATCG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>reverse_3507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGGTTTGGCAAGCT
CGAACT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_2817
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GGA
ACTGTACCACATCCCCC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>reverse_4472
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATGTACCCG
AGGGGATCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
