>input_sequence_28992
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----------------------------------------------------------------------------ATGG
GGAAGTGGATCAAGTCGCTGGTGGGCCTCAAGGCGCCGTCGGCGTCCGCGGCGCCGGGGAAGGGCCGGAAGTGGAGCCGG
CTGTGGCGGAGCGGGTCCTCGTCCGCGTCCAGGGACGGCGCCGGGGGCTGCGAGGCGTCCTCGACCACGTCGTCCGCCAG
CGGGATCGGCTCCGTCGTGGCCGCCGTGGCGCGCGCGCCGCCCCGGGACTTCCGCGTGATCAGGCAGGAGTGGGCCGCCA
TCCGCATCCAGGCCGCCTTCCGCGCCTTGCTGGTAA------------CCAACGCGCAGATTCCTCCATGATTTCGTGCT
ACTACGTATTCGGATCTGATGCGATACTGGTA----TTGATGAACTGATGATCTGTCGCGCGGTTGATCAGGCGAGGCGG
GCGCTGAAGGCGCTGCGGGGCATCGTGCGGCTGCAGGCGCTGGTGCGTGGCCGGCTGGTGCGGAGGCAGCTCGCCGTCAC
GCTCAGCCGCATGGAGGCGCTGCTGAGGGTGCAGGAGCGCGCCATGGAGCGCCGGGCGCGCTGCTCTGCCGACGCGCACT
CACAGGACGCGCCCGGCGACCGCAACGGCCGCGCCGACCCTCTCAGGGAAACCGAGGTACACATC-TTTTTGGATTGAAT
GTGCATTTTCAATGCTTGCTTCGATCAACGACTCGTGCAGCGCTCGGTAATGTCGAGAATGTAGTTTTCGTTCCTGCAAA
TTTGATAGAATCGCTCCATTCCTTGTGGCAAGAATTTGATGGTTTTTTTAGACACGACAAGAATTTGATGATGAATTAGA
TTAAGGCTGAGCTTTCTGTCAAAAAAAAGGCTGAGCTGGGCCTTCCTGTGACATAATATGGG-CCACCAGTTTATTAGTT
TAACACTGGCGCATGGGCTGTGTTGTTGAGTCCAGTCCACTCTTCGATTT------------------------------
-----------------------------------------------------------------CTGGCCCCTGGGCTA
TGTTGTTGCCTCAACACATGGTTCTGTTGCTCAAAACACACACACACACACACATGGTTCTAAAAAACACAAACACACAC
ATTTACAGGTTTTAAAACTAC------AC---AAATATACTTTTCCTCCAAAACAACGCCATTAGTGATTTTAATTTAGA
TCTGAATTCAAGTTACGAGTTAAGAAAGATTGCCATGCTCACATATTTGAATCCAGTTGGTAATAATTAATTACTTGTGC
AAACCAAATTTGATTCGAGCATGAGGTTTGGAGATCGCTTCGCTTCCAGGATGTGAATTCAGAGATAATTCTGTAGATGG
AAATCACCATCTGAATGCTTGACTACACTATGTGTTTACAAAAGGCAGTTTAATTAGCGGAAGAGTTTTGATGAAGTGTA
CTAGGTTCTTAC-TTTTCAACTCGTCTATGTTTTTTTT-AGAACGGCTCATGTATAATTTGAGAGGTTTGCACTTGTTCT
TAAAAAGAAAAGGATGTGTGAATATGCCTACTTTTATCTGAAAAGGACTTCTGCCAGTATGACTAAGATTGACATTGACA
GTTAAACTTCC--TTTGTTTTGGGTGATGATTGAGTCCATTATAAGATTGTTATTTGTGCTTTCACATGTAACATGCTTG
TTTGAATCGATCCTTGTAGTGACGATGTTAGGTGAGAAAAGCAATACGTATACACCAATGAGGCCTTATGCAGTTAGTGA
TTGCCCACCATGTTTTAAGTTCAGAACACAACTTACACACAATGGAGCTCAGAGGACATGTTGACATTTATGTGAGTTAA
TTAGGATAACCAAGTA--ATAACATATTTGGTGTTCTCACTGGTGGAATTATGTAAGTTGATTAGGAAATGTGGCGTCAA
ACTTGTTTGTGACAGATTAGCTGACATTCTTAGCACTGCAGGAACGGTGGTGTGACAGGCAAGGTTCTGTCAACCAAGTA
AAATCAAGAATGCACATGAAACATGAGGGCGCAGTGAAGAGACAAAGGGCAATTGCTTATGCTCATTCTCACCAGGTATA
TGCTGAACCAATGAGAATTTTCTAATACGTACGCACCTTACATTTGAGACTGATCTTTATTTCTTCACTTCTTTTATTTA
TTTAATTAATTATTTTTGCACATAATTCTTTCAGGGTCGGAGTTCTAGATACAGTGGAAGGTCAAGCTCCCCTGCAAGCT
CTCTCAGGAACCATGAATCTTACATAGAAGGATGGATGGCAACAAAGCCTTGGGAGAGCACGCATATGGACTCAAACCTC
GGCGAGTCGCGTCGTCTGCATAGCTACAAGGAGAAGATGAACTTTGAAGATTCCAAATATTCATGTGCTGGCTCCATCAA
GATCAGAAGAAACAACGACTCGACCAGGGTTGAAACAATGCCTCCTCCGGCACTCTCGGCTTCCTCGTCGGACTTTGGGT
GCGACGAGAGCTCTCCGTCGACATCTTCGGTGACCCCGGGATACT---CTACCAACACCTTGGCATCGGAGGCAAGATCC
GACGGTGGTGGAGGGCCGGGGTACATGAGCTTGACCAAGGCTGCCAAAGCAAGGCTGGAGGACGTCGGCGGCAGTCGGAG
AGGGCCGTTCCAGCTGCAGAGGCAGCGGTCTGGGGGCGTGCCGTATTACAGCAGAAGGGTGGCGCTCTCCTCGTTGGACT
CCGAGAGCAACGCCGGCTCCGATGTCTCGGCCGCCGCGAGGAGGTTGAACAGCTTGTCTCTGAAAGGGCAGAGCATGACC
CGAAGCTTGGACAAGGAGAACTACAATTATTAA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr1B_1_TraesCS1B01G379600
GTGATATGTTTTTCTCATATTGCAACACACCAACACGTTTGCTAGCGATACTAGAAAAGACCGGAGGAAGTACTAGTGAT
TTTTTGCGAACCAACCTGTGTTGAGTTGGTTAGGTGGACAGGGGTATCCTCAACCCATCAGGGTTCAAATCCTGGTGCTT
GCATTATTCCTGGATTTATTTCAGGATTTCCGGCGATGCGCTTTCAGTGAGAGGAGACGTTCCCGTCGACGACGAGGCGC
CTACGGTGGCTTTGTAAATCTCAAGATGATATGTCGGCTCAGTCTCTCGAAGGTGCTCGTGGGGATAGGGTGTGCCTATA
TACATTCATAGGGGTGAGTGTATGCGCGTGTATATGAGCGCTTGTGTCTGTACTGATGCTAAAAAAAAGTAGTAGTGGTT
TTTCCTTGCGAGAAGCGAATCGTGAAAGCGCACCAAGGTCCGTTCTGCCCACGGCCCCTCGACGCCGTGCCGTGCCGGCG
GCGTCAACCGTCGATCGTCGAGCGCGAGCTGATCGTCTCCACCTCCCC-----AGGCCGTCCGTAACTGACATGTGCGCC
CACGTTCGCCGTGGACCCGGCGGGTCAGCGTCCGGGGCCCGTCCCACGAGAAAGCCACGTTCCAGACGGCCCTTCTTTCC
CGGAAACCTATGCGCCACGGGAGCTCCGCCGTGCCTCCTCCCACCTGAACCAGCAAACACGTGGGCCCCACCTTGAGCGC
CGGGCCCGCGCCCAGCGACCCGGCGTGCTCGCCCTCGGGGCCGGCTTTCCTTGTCGCCGTTCGAAATTCGAATTGAATGC
CCACGCGCGGAGCGGAAACGGACTCCAAACCCCCCGGAGAAAAAGACAACGGCTACCTCCCCCACTACTTGTGCTTCCGT
TTTGTCTCGTCTCGAT----CAGCCGGCCTCATTCTTCGTCGGTCGTCACTCTCCC-CGCACC------------CGCAG
AGCCAGCCAAGCAG---GAGCTCCAG-CCCGGACGTGTAACGACTGACGAGAGCGTGAG----------GGCGTCGATGG
GGAAGTGGATCAAGTCGCTGGTGGGCCTCAAGGCGCCGTCGGCGTCCGCGGCGCCGGGGAAGGGCCGGAAGTGGAGCCGG
CTGTGGCGGAGCGGGTCCTCGTCCGCGTCCAGGGACGGCGCCGGGGGCTGCGAGGCGTCCTCGACCACGTCGTCCGCCAG
CGGGATCGGCTCCGTCGTGGCCGCCGTGGCGCGCGCGCCGCCCCGGGACTTCCGCGTGATCAGGCAGGAGTGGGCCGCCA
TCCGCATCCAGGCCGCCTTCCGCGCCTTGCTGGTAA------------CCAACGCGCAGATTCCTCCATGATTTCGTGCT
ACTACGTATTCGGATCTGATGCGATACTGGTA----TTGATGAACTGATGATCTGTCGCGCGGTTGATCAGGCGAGGCGG
GCGCTGAAGGCGCTGCGGGGCATCGTGCGGCTGCAGGCGCTGGTGCGTGGCCGGCTGGTGCGGAGGCAGCTCGCCGTCAC
GCTCAGCCGCATGGAGGCGCTGCTGAGGGTGCAGGAGCGCGCCATGGAGCGCCGGGCGCGCTGCTCTGCCGACGCGCACT
CACAGGACGCGCCCGGCGACCGCAACGGCCGCGCCGACCCTCTCAGGGAAACCGAGGTACACATC-TTTTTGGATTGAAT
GTGCATTTTCAATGCTTGCTTCGATCAACGACTCGTGCAGCGCTCGGTAATGTCGAGAATGTAGTTTTCGTTCCTGCAAA
TTTGATAGAATCGCTCCATTCCTTGTGGCAAGAATTTGATGGTTTTTTTAGACACGACAAGAATTTGATGATGAATTAGA
TTAAGGCTGAGCTTTCTGTCAAAAAAAAGGCTGAGCTGGGCCTTCCTGTGACATAATATGGG-CCACCAGTTTATTAGTT
TAACACTGGCGCATGGGCTGTGTTGTTGAGTCCAGTCCACTCTTCGATTT------------------------------
-----------------------------------------------------------------CTGGCCCCTGGGCTA
TGTTGTTGCCTCAACACATGGTTCTGTTGCTCAAAACACACACACACACACACATGGTTCTAAAAAACACAAACACACAC
ATTTACAGGTTTTAAAACTAC------AC---AAATATACTTTTCCTCCAAAACAACGCCATTAGTGATTTTAATTTAGA
TCTGAATTCAAGTTACGAGTTAAGAAAGATTGCCATGCTCACATATTTGAATCCAGTTGGTAATAATTAATTACTTGTGC
AAACCAAATTTGATTCGAGCATGAGGTTTGGAGATCGCTTCGCTTCCAGGATGTGAATTCAGAGATAATTCTGTAGATGG
AAATCACCATCTGAATGCTTGACTACACTATGTGTTTACAAAAGGCAGTTTAATTAGCGGAAGAGTTTTGATGAAGTGTA
CTAGGTTCTTAC-TTTTCAACTCGTCTATGTTTTTTTT-AGAACGGCTCATGTATAATTTGAGAGGTTTGCACTTGTTCT
TAAAAAGAAAAGGATGTGTGAATATGCCTACTTTTATCTGAAAAGGACTTCTGCCAGTATGACTAAGATTGACATTGACA
GTTAAACTTCC--TTTGTTTTGGGTGATGATTGAGTCCATTATAAGATTGTTATTTGTGCTTTCACATGTAACATGCTTG
TTTGAATCGATCCTTGTAGTGACGATGTTAGGTGAGAAAAGCAATACGTATACACCAATGAGGCCTTATGCAGTTAGTGA
TTGCCCACCATGTTTTAAGTTCAGAACACAACTTACACACAATGGAGCTCAGAGGACATGTTGACATTTATGTGAGTTAA
TTAGGATAACCAAGTA--ATAACATATTTGGTGTTCTCACTGGTGGAATTATGTAAGTTGATTAGGAAATGTGGCGTCAA
ACTTGTTTGTGACAGATTAGCTGACATTCTTAGCACTGCAGGAACGGTGGTGTGACAGGCAAGGTTCTGTCAACCAAGTA
AAATCAAGAATGCACATGAAACATGAGGGCGCAGTGAAGAGACAAAGGGCAATTGCTTATGCTCATTCTCACCAGGTATA
TGCTGAACCAATGAGAATTTTCTAATACGTACGCACCTTACATTTGAGACTGATCTTTATTTCTTCACTTCTTTTATTTA
TTTAATTAATTATTTTTGCACATAATTCTTTCAGGGTCGGAGTTCTAGATACAGTGGAAGGTCAAGCTCCCCTGCAAGCT
CTCTCAGGAACCATGAATCTTACATAGAAGGATGGATGGCAACAAAGCCTTGGGAGAGCACGCATATGGACTCAAACCTC
GGCGAGTCGCGTCGTCTGCATAGCTACAAGGAGAAGATGAACTTTGAAGATTCCAAATATTCATGTGCTGGCTCCATCAA
GATCAGAAGAAACAACGACTCGACCAGGGTTGAAACAATGCCTCCTCCGGCACTCTCGGCTTCCTCGTCGGACTTTGGGT
GCGACGAGAGCTCTCCGTCGACATCTTCGGTGACCCCGGGATACT---CTACCAACACCTTGGCATCGGAGGCAAGATCC
GACGGTGGTGGAGGGCCGGGGTACATGAGCTTGACCAAGGCTGCCAAAGCAAGGCTGGAGGACGTCGGCGGCAGTCGGAG
AGGGCCGTTCCAGCTGCAGAGGCAGCGGTCTGGGGGCGTGCCGTATTACAGCAGAAGGGTGGCGCTCTCCTCGTTGGACT
CCGAGAGCAACGCCGGCTCCGATGTCTCGGCCGCCGCGAGGAGGTTGAACAGCTTGTCTCTGAAAGGGCAGAGCATGACC
CGAAGCTTGGACAAGGAGAACTACAATTATTAATCCCACTTATC--------TGCTCACATGGACAAACTAGTTTGCACC
TCATATACTCCCTCCGTTCCAAAATAGATGACCCAAATTTATACTAACTTTAGTACAAAGTTAGTACAAAGTTGAGTCAT
CTATTTTGGAACGGAGGGAGTATAAATTTTCTTCATTCTGCTTCTGCTGTAGCGTTATGTGCACACACACATACCCAGTT
CAAGTTCAACGCCTCATTG----CATCAATAATAATAATATTCTAGGTGACATTGGTCAGAATGGAAAAGGTTCCCCAAG
TCTTTGTGATTGTCCTGATCTAATACCGTTTTGTACTTTGTACCTATGTCAAAGGTTGAACCTCTGTTTGTCCCTCTAGG
CTCTAGCTAACTGCGGTGTGGCAGGATCCATCTTCTTCTCTCTCGGATGCATGAGATCGAATCTCTTGGAAGAGTGAGGC
GTCGGTCGGCAGCCGGCCGGTCCTTCCCCGCCTGGGAAAGAGATACAACGAACCTATAGGGCCATAGCTTCCACGACAAA
GGCAGGGGAGGTAACATAGCGGTTCGTGCAACGCGCTAGGTGGCGCGTCTCGCGATTTGTGGTGGTCGGCATGGTACTTG
CCAGACTTCAGGGTGGCGGGGGTGCTCGTCTACCGGTGGGGTGTGGTGGTTCTTCGGGCTCAATACATCTCGATCGGTAC
GAATGGTACATTTTCCTTGTCACGTGTCGGGGGAGGAGGAGGCACCGTGAGACATGGTACATTTTCCTTGTCACGTTGCG
AGAATTGGTGAGGCGTCTGGCCATACGGCACAATACATCTCGATCGGTACGAATGGCAGGCAGGGAGAGAGAGGTTTAAA
GCCGTCATGGGGTGCTGGAGGTAGTGGGTCACATCACTCTTCCCCTTCCTCCTCAATCTAGACCACAAAGAGCTTTGTCC
TGTCAAAACCCTCGTCGACGATGGTGGAAATCACAGAAGAGAGGATGAGGGAGTTCGTGGGATGGGATACACACAAGCGT
GCTCG
>chr1A_393
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TAGTGATT
CTCCCTTGCGAGAAACGAAGCGTGAAAGCGCAGCAAGGTCCGTTCTGCCCACGTTCCC-CGACGCCGTGCCGTGCCGGCA
CCGCCGTCGACGGACCGTCGAGCGCGAGCTGATCGTCCCCACCTCCCCTCCTCAGGCCGTCCGTTACTGACAAGTGCTTC
CACGTTCCCCGTGGACCCGGCGGGTCAGCGTCGGGGGCCCGTCCCACGAGAAAGCCACGTTCCAG--------TCTTTCC
CGGAAACCTATGCGCGACGGGAGCTCCGCCGTGCCTCCTCCCACCTGAACCAGCAAACACCTGGGCCCCACCTCGAGCGC
CGGGCCCGCGCCCAGCGACCCGGCGTGCTCGCCCTCGGGGCCGGCTTTCCTTGTCGCCGTTCGAAATTCGAATTGAATGC
CCACGCGCGGAGCGGAAACGGACTCC------CCCGGAGAAAAGGACAACGGCTACCTCCCCCACTACTTGTACTTCCGT
TTTGTCTCGTCCGATCGTCCCGGCCGGCCTCATCCTTCGTCGGTCGTCACTCCCCC-CGCGCCCGCAGACGCAGACGCAG
AGCCAGCCAAAGCAGGAGAGCTCCCG-CCCGGACGTG-------TGACGAGAGCGTGAG----------GGCGTCGATGG
GGAAGTGGATCAGGTCGCTGGTCGGCCTCAAGGCGCCGTCGGCGTCCGCGGCGCCGGGAAAGGGCCGGAAGTGGAGCCGG
CTCTGGCGGGG------------CGCGTCCAGGGACGGCGCCGGGGGCTGCGAGACGTCCTCGACCACGTCGTCCGCCAC
CGCGCTCGGCTCGGTCGT---------GGCGCGCGCGCCGCCCGCGGACTTCCGCGTGATCAGGCAGGAGTGGGCCGCCG
TGCGCATCCAGGCCGCCTTCCGCGCCCTCCTGGTAAGTGGTAACCAATCCAACGCGCAGATTGCTCCATGGTTTCGTGCT
ACTGCGCATTCCGATCTGATGCGATACCGGTG----ATGATGGACTGATGATCTGTCGCGCGGTTGATCAGGCGAGGCGG
GCGCTGAAGGCGCTGCGGGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGCCGGCTGGTGCGGAGGCAGCTCGCCGTCAC
GCTCAGCCGCATGGAGGCGCTGCTGAGGGTGCAGGAGCGCGCCATGGAGCGCCGGGCGCGCTGCTCCGCCGACGCGCAGT
CACAGGACGCGCCCGGCCACCGCGACGGCCGTGCCGATCCGCTCAGGGAAACCGAGGTGCATATCTTTTTTTGATTGAAT
GTGCGTTTGCAATGCTTGCTTCGATCCATGACTCTTGCAGCGCTCGGTAATGTCGAGAATGTAGTTTTCATTCCTGCAAA
TTTGATAGAATCGCTCCATTTCTTGTGGCAAGAATTTGATGGTGAATTAGAGATTG------------------------
---------------------------AGGCTGAACTGGCCCTTCCTGTGG-----TATGGG-CCTCCAGTTTCTTAGTT
TAACACTGGCCCATGGGCTATGTTGTTGAGAATGTAGAAATTTGATAGAATCGCGCCATTTTTGGTGGCAAGAATCTGGT
GGAGAATTCGAGAGATTGGGGCTCAGCTGGGCCTTGCTGT---------------------AACACTGGCCCATGGGTTA
TGTTGTTCAGTCCGCTCTC--TTCCATTTCTGAAAACACACCCCTCTTTTTTTTTTCTG--------AAAACACACACAC
TTTTACAGGTTTTTAAACTAC------ACCACAAATATACAATTCCTCCAAAAGAACGACATTAGTGATTTTTA-TTAGA
TCTGGATTCAAATTATAAAGTAAAAAAGATTGCCATGCTCACATATTTGAATCCAGTTGGTAAA---TAGTTACTTGTGC
AAACCAAATTTGATTCGAGCATGAGGATTGGAGATCGTTTCGTTTCCAGGATGTGAATTCAGAGATAGTTCTGTAGATGG
AAATCACCATCTGAATGCTTGACTACACTATGTGTTCACAAAAGGCAGTTTAATTAGCGGAAGAGTTTTGATGAAGTCTA
CTATGTTGTTATATTTTCAACTTGTCTATCTTTTTTTTAAGAACGGCTCATGTATAATTTGAGAGGTTTGCATTTGTTCT
TAAAAAGAAAAGGATGTGTGAATATGGCTACTTTTATCTGAAAAGGACTTCTGCCAGTATGACTAAGACTGATATGGACA
GTTAAACCTTTTTTTTGTTTTGGGTGATGATTGGGTCCATTATAAGATTGCTATTTGTGCTTTCACATGTACCATGCTTG
TT---------CCTCGTAGTGACGATGTTAGGTGAGAAAAGCAGTACGTATACACCAATGAGGCCTTATGCAGTTAGTGA
TTGCCCACCATGTTTGAAGTTCAGAACACAACTTACACACAATGGAGATCAGAGGTCATGTTGACATTTCTGTCAATTAA
TTAGGATAACCAAGTAATATAGCATATTTGGTGTTCTCACTGGAGGAATTATGTAAGTTGATTAGGAAATGTGGCGTCAA
ACTTGTTTGTGACAGCTTAGCTGACATTCTTAGCACTGCAGGGACGATGGTGTGACAGGCAAGGTTCTGTCAACCAAGTA
AAATCAAGAATGCACATGAAACATGAGGGCGCAGTGAAGAGACAAAGGGCAATTGCTTATGCACATTCTCACCAGGTATA
TGCTGAATCAATGAGAATTTCCTAATACGTACACACCTTACTTTTGATACTGATCTTTATTTCTTCACTTCTTTTATTTA
TTTAC--------TTTTGCTCATAATTCTTTCAGCGTGGGAGTTCAAGATACAGTGGAAGGTCAAGCTCCCCTGCAAGCT
CTCTCAGGAACCATGAGTCTTACATAGAAGGATGGATGGCAACAAAGCCCTGGGAGAGCACGCATATGGACTCAAACATC
GGCGAGTCGCGTCGTCTACATAGCTACAAGGAGACGATGAACTTCGAAGACTCCAAATATTCATGTGCTGGCTCCACCAA
GATCAGAAGAAACAACGACTCGACCAGGGTTGAAGCAATGCCTCCACCGGCGCTCTCGGCTTCCTCTTCTGACTTTGGGT
GCGACGAGAGCTCTCCGTCGACATCCTCGGTGACCCCGGGATACT---CTACCAACACCTTGGCATCAGAGGCGAGATCC
GACAGTGGTGGAGGGCCGGGGTACATGAGCCTGACCAAGGCTGCCAAAGCAAGGCTGGAGGACATCGGCGGCAGTCGGAG
AGGGCCCTTTCAGCTGCAGAGGCAGCGATCTGGGGGCGTGCCGTATTACAGCAGAAGGGTGGCACTCTCGTCGTTGGACT
CCGAGAGCAACGCGGGGTCAGATGTCTCGGCCGCCGCGAGGAGGTTGAACAGCTTGTCTCTGAAAGGCCTGAGCATGACG
AGGAGCTTGGACAAGGAGAACTACAATTATTAATCCTAGCTGCTTGCTTGCTTGCTCACATGGACAAACTAGTTTGCAAC
TCATAC--------------------------------------------------------------------------
---------------------ATAAATTTTCTTCATTCTGCTTCTGCTGTAGCGTTATGTGTACACGCCCCCAGTG---T
CAAGTTCAACGCCTCATTGATTGCATTAATAATAAT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr1D_529
AGACCATCCGT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTACTGACATGTGCGCC
CACGTTCGCCGTGGACCCGGCGGGTCAGCGTCCGGGGCCCGCCCCACGAGAAAGCCACGTTCCGGACGGTCCTTCTTTCC
CGGAAACCGATGCGCGACGGGAGCTCCGCCGTGCCTCCTCCCAACTGAACCAGCAAACACGTGGGCCCCACCTTGAGCGC
CGGGCCCGCGCCCAGCGACCCAGCGTGCTCGCCCTCGGGGCCCGCTTTCCTTGTCGCCGTTCGAAATTCGAATTGAATGC
CCACGCGCGGAGCGGAAACGGACTCC------CCCGGAGAAAAGGACAACGGCTACCTCCCCGGCTACTTCTGCTTCAGT
TTTGTCTCGTCCCGAT----CGGCCGGCCCCATTCTTCATCCATCGTCACCCCTCCTCACACC------------CGCAG
TGCCACGCGGGAGC---TAGCTCCGACCCCGGACGCG-------GCGAGAGAGAGGGAGAGAGAGGGGCGGCGTCGATGG
GGAAGTGGATCAAGTCGCTGGTGGGCCTCAAGGCGCCGTCGGCGTCCGCGGCGCCGGGGAAGGGGCGGAAGTGGAGCCGG
CTGTGGCGGAG------------CGCGTCCAGGGACGGCGCCGGGGGCTGCGAGACGTCCTCAACCACGTCGTCCGCCAG
CGCGCTCGGCTCGGTCGTGGCCGCCGCGGCGCGCGCGCCGCCCCGGGACTTCCGCGTGATCAGGCAGGAGTGGGCCGCCG
TGCGCATCCAGGCCGCCTTCCGCGCCCTCCTGGTAAGTGGTAACCG-----ACGCGCAGATTGCTCCATGGTTTCGTGCT
ACTACGTATTCCGATCTGATGCGATACTGGTGTTTGTTGATGAACTGATGGTCTCTCGCGCGGTTGATCAGGCGAGGCGG
GCGCTGAAGGCGCTGCGGGGCATCGTGCGGCTGCAGGCGCTGGTGCGCGGCCGGCTGGTGCGGCGGCAGCTCGCCGTCAC
GCTCAGCCGCATGGAGGCGCTGCTGAGGGTGCAGGAGCGCGCCATGGAGCGCCGGGCGCGCTGCTCCGCCGACGCGCTGT
CACAGGACGCGCCCGGCCACCGCGACGGCCGTGCCGATCCGCTCAGGGAAACTGAGGTACATATC-TTTTGGGATTGAAT
GTGCATTTGCAATGCTTGCTTCGATCCATGGCTCTTGCAGCGCTCGGTAATGTCTAGAATGTAGTTTTCATTCCTGGAAA
TTTGATAGAATCGCTCCATTTCTTGTGGCAAGAATTTGATGGAGAATTAGAGATTC------------------------
---------------------------AGGCTGAGCTGGGCCTTCCTGTTACAAAATATGGGTCCTCCGGTTTCTTAGTT
TAAAACTGGCCCATGGGCTATGTTGTTGAGAATGTAGAAATTTGATAGAATCGCTCCATTTCTTGTGGC-AAAACTTGAT
GGAGAACTAGAGATT----GGCACAGCTGGACCTTGCTGTGGGCCTCCACTTTCTTAGTTTAACACTGGCCCATGGTTTA
TGTTGTTGAGTCCGCTGTC--TTCCA---------------------------TTTCTT--------CACACGCACACAC
TTTTACAGGTTTTAAAACTACTACAACAC---AAATATATTTTTCCTCCCAAAGAACACCATTAGTGATTTTAA-TTAGA
TCTGGATTCAAGTTATGAATTAAGGAAGATTGCCATGCTCACATATTTGAATCCACTTGGTAAA---TAATTACTTGTGC
AAACCAATTTTGATTCGAGCATCAGGTTTGGAGATCGTTTCGCTTCCAGGATGTGAATTCAAAGATAATTCTGT------
--ATCACCATCTGAATGCTGGACTACACTATGTGTTCACAAAAGGCAGTTTAATTAGCAGAAGAGTTTTGATGAAGTGTA
CTAGGTTCTTAAATTTTGAACTCGTCTATCTTTTTTTC-AGAACGGGTCATGTAAAATTTGAGAGGTTTGCACTCGTTCT
TAAAAAGAGAAGGATGTGCGAATATGGCTACTTTTATCTGAAAAGGACTTCTGCCAGTATGACTAAGATTGACATTGACA
GTTAAACTTC--TTTTGTTTTGGGTGATGATTGAGTCCATTATAAGATTGTTATTTGTGCTTTCACATGTACCATGCTTG
TTTGAATCGATCCTTGTAGTGACGATGTTAGGTGAGAAAAGCAATA----TACACCAATGAGGCCTTACGCAGTTAGTGA
TTGCCCACCATGTTTTAAGTTCAGAACGCAACTTACACACAGTGGAGCTCAGAGGACATGTTGACATTTATGTGAATTAA
TTAGGATAACCAAGTA--ATAACATATTTGGTGTTCTCACTGGAGGAATTATGTAAGTTGATTAGGAAATGTGGCGTCAA
CTTGGTTTGTGACAGATTAGCTGACCTTGTTAGCACTGCAGGAACGATGGTGTGACAGGCAAGGTTCTGTCAACCAAGTA
AAATCAAGAATGCACATGAAACATGAGGGTGCAGTGAAGAGACAAAGGGCAATTGCTTATGCTCATTCTCACCAGGTATA
TGCTGAACCAATGAGAATTTCCTGATACGTACACACCTTACATTTGAGACTGATCTTTATTTCTTCACTTCTTTTATTTA
TTTATTTATTTATTTTTGCACATAATTCTTTCAGGGTCGGAGTTCAAGATACAGTGGAAGGTCAAGCTCCCCTGCAAGCT
CTCTCAGGAACCATGAGTCTTACATAGAAGGATGGATGGCAACAAAACCCTGGGAGAGCACGCATATGGACTCAAACCTC
GGCCAGTCGCGTCGTCTACATAGCTACAAGGAGACGATAAACTTCGAAGACTCCAAATATTCATGTGCTGGCTCCACCAA
GATCAGAAGAAACAATGACTCAGCCAGAGTTGAAGCAATGCCTCCACCGGCGCTCTCGGCTTCCTCCTCGGACTTTGGGT
GCGACGAGAGCTCTCCGTCGACATCCTCGGTGACCCCAGGATACTCTGCTACCAACACCTTGGCATCAGAGGCAAGATCC
GACAGTGGTGGAGGGCCGGGGTACATGAGCTTGACCAAGGCTGCCAAGGCAAGGCTGGAGGACGTCGGCGGCAGTCGGAG
AGGGCCGTTCCAGCTGCAGAGGCAGCGGTCTGGGGGCGTGCCGTATTACAGCAGAAGGGTGGCGCTCTCTTCGTTGGACT
CCGAGAGCAACGCGGGATCGGATGTCTCGGCCGCCGCGAGGAGGTTGAACAGCTTGTCTCTCAAAGGGCAGAGCATGACG
AGGAGCTTGGACAAGGAGAACTACAATTATTAATCCTAGCTGCTTGCTTGCTTGCTCACATGGACAAACTAGTTTGCAAC
TCATA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>SNPs
SSSSS--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
S-S-----------S----S------------S--------------------SS---S--------------------S
S--S-SS-SSSS--S----------------------S--------------------------S---------------
---------------------------------------------------------------------S----------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------SSSSSS-----------S------------------------------------
-----------S---------S------------------------------S---------------------------
-----------SSS----------S------------SSSSSSS------------------------------------
--------------------------------------------------------------------------------
-----------SSSSSSSSSSSS-------------------------------S-------------------------
--S-S-------S-------------S----------------------------------------------------S
-S------------------------S-S---------------------------------S-------S---------
-----------S-------------------S------------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------------------------S-----------S-
-----------------S-----S-------S-----S--S--------------------S------------------
--------S-----------------S-S-----S----------------------------------S----------
--------------------S----------------------SSS--SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S-----------S-------S------
----------S--------S----------SSSSSSSS-S-S-SSS-SSS------------------------------
------------------------------------------------------------------------S----S--
--------SS--SS-S-SSSS---SS--S--S---------S-SSSSSSSSSSS-SS--SSSSSSSS----S--------
S----------------------------------------------------S--------------------S-----
----S----------S--S--------------------------------------------SSSS-------------
-------------------------------------S------------------------------------------
------------------------------------S-------------------------------------------
-----------S-----------------S--------------------------------------------------
--------------------------S-----------------------------------------------------
----------S------------------------------------------------------------S--------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------S------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------S-----------S-----------------------------------------------
----S---S------------------------------------S----------------------------------
----------------S--------------------------------S------------------------------
-----------------S----------------S---------S-----S-------------------------S---
----------------------------------S----------S-----S--------------S-------------
-------------------------S-----------------------------------------S------------
---S----------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------S--S--S-----------------------------------------------------------S
S-S---------------------------------S-SS-SSS----------------------------------S-
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----------------------------------------S----S-S-SS-SSSSSS-
--------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_131
--------------------------------------------------------------------------------
-------------------------------AGGTGGACAGGGGTATCCTC-----------------------------
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>reverse_1931
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----------GCATGGGCTGTGTTGTTGAG--------------------------------------------------
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>forward_216
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------------------------------------TGCGCTTTCAGTGAGAGGAG------------------------
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>reverse_1960
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---------------------------------------CTCTTCGATTTCTGGCCCCT---------------------
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>forward_1343
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-------------------------------------------GGTAACCAACGCGCAGATTC-----------------
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>reverse_3330
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-------------------------------------------------TTGGGAGAGCACGCATATGG-----------
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>forward_3007
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---------------------------TCTTAGCACTGCAGGAACGG---------------------------------
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>reverse_4679
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--------------------------------------CTCGATCGGTACGAATGGCA----------------------
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-----
