>input_sequence_28969
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------------------------------------------------------------------------ATGGCCGC
GGCGG---------C------CGGTGGCCACCGCTGGACGGAGGAGGTGGACGACCTGGTCGACGCCGGGGACGTCGACG
GCGCCATCTCCCTCCTCGAGTCCGTGGTCTCCAGCCTCTCCACCGCCGCCCCCTCGCCTCCGCCGGCGGGCGCCGATCTC
CGCCTCGCCACGGCGCTCGGCGACCTCGCCGGCCTCCACGCCTCCCGCGGGAACACCCTCCAGGCCGACGCCATCCGCTC
CCGCGCCATCGTCCTCCGCCTCCGCGCCGAGAAAGAAGCCCCCCGGCCCCAGGCCCTAGGGTTTGTTCCTCCTCCTATCC
CAAGCTCTGTTCTTGCTTCTGAACCGAATCTTGGCCTGCTCGACCTGGACTTGCCAATTTGGAAAAATTGTGATGTTTTC
TCTGTAAATTCGAGTAGCTTCTAGCTCGCGATCTCGTAGATAGCAGAGCACGAATCACGTAAATGTGGCACACGATCTGA
ACAAATTCAGCTGCAGTTGCTCCCTGTTTGGGCCACCTGACCTGACCAACTCCTGCTCTGCTTCTGATAATTTACATTGA
AGGGATCATGCGACGGCGGAGAATTCTGCATCGCCAGAGGCCTCTACGGGATCTATGGACTCGAAAGCCTTGTCTAGCGT
CGACGACAAGGAGGGAGATGAAGATGACGGTATTATTCTAGTAGCCTCTGTCTCTGTGCT-GAGCTGGAAACAGCTCAGG
CAAAACTGAGACACTGACATTCTTCCTCTGACGCCTATGCAGATTGGGAGGCTATTGCGGACCGAGGCGATGAGACACCG
GTGCGCCCCCTCATGCAAGAGGCGAGGGTGACAACACCTTGTAGTTCTTCAGAGAAAAGTGGCACTTCATCTTCAGGGAC
CAAGAGGAGGGGAAGGGGTTCTTTTCTCTATGATAAGAGTGTTTTATACAGCGACCAGTGCGGTTCAGAGAGGGATCTGG
ATGACAAAGGGTCTGATCCAGCTCGTGGTGGATCAAAGGGTCATGCGGATGAAAAAGATAATAAGGATGGTAATTTATTC
AGGATGACTAGTCTTCTCTGTCTAGTTGGCTTGCTCACGGTGGGTAAACTAAACTCTTGTTCTTTTTGTTTGGTTTTGCA
GCTGCAAAACGATTTGGGACAAGGCACGCGCTTGTTCTTTACGACTTCCCACCTAGCACACGCACAACAGATTTGGAAAG
GATCTTTGAGAAGTTTGGAGACCATGGAGTTGCCGTCCGCTGGGTCAATGATTCAGTTGCACTTGCAGTTTTCCGGACCC
CGTCATCTGGTAATTTGGTTGTTACACTTACTTCTAGTAATCTTTCTGTATGTTTCTTCGTATACCTTGATCTAGTAACT
GTTGCCACATTCTTGTGTAACCTAGACTTTTTTATTATCGAACTGTACAAGTACACAACTCCACCTGTGGAAGCAAAGCT
TTGATGTCAAATATGGTGCATTGGACAAGCATTATTTCCATTTTCATAATTATTTCCGTCAGAAGGGCAGTTCTCCAGAT
TTTTTAGCTAAACTGTTATGATAGCTAACCATAACTCCATAGCTAAATTATTAGAGGGAACCATTACAATCCCCTTCTTC
CAACTCGGCTGTGCGGGACTTTGTTTGTTTCATGATATATGTGTAATTTTGATATGTGCGCTCAGTCAAAACATGACAGT
TATGAAGTCCAACCTAGACAGCAAA-TGCATAATTGATTATTAGTCTTTGGTTTATTGCTCAAGCTATTCACTGTCGTTC
TGGTTCAGTCTTTCTCCATTCTCTTGGACCTTAGATCTTTGTGCTGATCACATGAACTTCCAAGCTTTTTATTACTTATG
TTTTCTGGCTTTAATCGATGCATTCTGATCGCTTCATTCTGGCCTATTGTACTGGAGCTAATGAGCCACAGGCTTCTGTG
CCTCCAAGATACAATGTGCAAAACATGATCAAAGAGAAAAAGTACAAATTGG-ACAGTTCCCTTATCCCAATTAGGTTGC
ATTGTACCA--TTTATTTCATGATGTATGTGTAATGTTGATATGTGTGCATACAGAACATGGTATTT------------C
TACAGAGCAGAATGCAAAATTTAGTAGGGAGCAGAATTCATGATTTAGTAGAAAGCAGAATGCATAGTTTACTC-TAGTC
TTGGTTCATCGTTGAAGCTTATACTTTGATGATTGTTCAACCTTTTTTCCCATCCTGCTGAAACTTGAACTTCATGCTGA
TGTTATGAACTTGCAAGGTGTCTGTACTTCTGTTTTCTGGCTTTATTGATTCTATTCTGGCCTATTGACCTGTTGGCCTG
TTGTCATGTACTCCTGTAGCTAAGGAGGCACAAGCTTGCGTGCCTCCAAGATACAAAGTACGGTCACTAAAGGATAATGA
CGATCTCTTGGCAAAAATCGACGGTACAGGTAACAGCTTGTTCCTTGTGCTAATCCTTTTCAGCTTGATCTTCTTGTCCC
TAAGGATCGTGTGTAGTTCATAGCTCATACCTTCCACCTTATGTTGTTTC-CATGTTGAATTGCAGACCTAGAACCGCCG
ACGCCAAGACCAAAGACGTCCGCGAGAACGGCGCAGAGGCTGATCGCCCACGGGATGGGGCTAAAGCAGTTCACGACCAT
CGATGCAGGCGAGCGGAAGGAGCAGGAGGAGGCGAGGAGGAGCCGGATCACCGCCCGGCAAGCTGCGCGCGATGATGCCT
GGGGTGAGGACTGA------------------------------------------------------------------
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----------------------------------------
>chr3D_1_TraesCS3D01G521500
TGTCCCTAGTAAGCCTCTACTAGACTAGCTCGTTGATCAAAGATGGTTAAGATTTTCTAACCATATATCGACATGGGTTG
TCATTTGATAACAGGATCATATCATTAGGAGATTGATGTGATGGACAGACCGAACTGTAAGCTTAGCATCAAATCGTTTA
CTTATTTGTTACAACTATCTTCATGTCAAGTATCAGTTCCTTAGACCATGAGATCATGTCACTATGACGAAGCATCACTC
GAGATCCGTCCATTCGAAGAGAGGGAGGAGTAGACGTAGATGAGGACAAAGCAATGCACAAGAGGATGCGCTGCCTCACC
GTCAACCTTGGCGGAGCATGCCGCGACTGCCAGAGTAGTAGAGGAAGAGAAACAAGAGTGGCGAATGGAAGCTAGGTCTA
GGGCTCTAGGCATTAGGGATTTGCGATGAAAAATTGGGTGTGAATCGGTGTATAACCATTAGCTGGACTGCGGTTATATG
AGAGGCTTGCAAGGTCCTTTTTGCAAAAGATTTGATTCAACAACTTTGATAAATGCCATGAACCAACGCCTCGTACGACT
CAACAACCCCATCATCGGTTTTAACCCAACTATACCGGTTTTGGACCAAAGTGGTT------------CGTGCCAATTTT
CATAGT----CAATGAGGTGTTGGATGAAAGTTGTACATACGTGTTGAGTGCTACGCGGTGTAATTTACTCTTTTAGTTC
GTTTGATTGATTGAATAAGAAGTTTTAGAGAAGGGTACCCT---AAAAAAAAGGTTTTAGACAAGAAAATGGTCCAATCA
TGAGAAATTGATTC-GCAACTTTAGCAAAGCACAAGCACCCCTCAAAAACAAAAACAAAGCATA-----AAGCACCAAAA
AATTAGCTGTGACATGAACTTTGTAGCACG------ACACACCTGTGTGCGGGGCCCACACTTGA-GCCCCCGACTGCCT
GAGTTGCCTACCACCACCGTCTCCCATCTGTCTACAGTCCACGCGAGAGTCCAGCCCAGCCTACCCCCACCGATGGCCGC
GGCGG---------C------CGGTGGCCACCGCTGGACGGAGGAGGTGGACGACCTGGTCGACGCCGGGGACGTCGACG
GCGCCATCTCCCTCCTCGAGTCCGTGGTCTCCAGCCTCTCCACCGCCGCCCCCTCGCCTCCGCCGGCGGGCGCCGATCTC
CGCCTCGCCACGGCGCTCGGCGACCTCGCCGGCCTCCACGCCTCCCGCGGGAACACCCTCCAGGCCGACGCCATCCGCTC
CCGCGCCATCGTCCTCCGCCTCCGCGCCGAGAAAGAAGCCCCCCGGCCCCAGGCCCTAGGGTTTGTTCCTCCTCCTATCC
CAAGCTCTGTTCTTGCTTCTGAACCGAATCTTGGCCTGCTCGACCTGGACTTGCCAATTTGGAAAAATTGTGATGTTTTC
TCTGTAAATTCGAGTAGCTTCTAGCTCGCGATCTCGTAGATAGCAGAGCACGAATCACGTAAATGTGGCACACGATCTGA
ACAAATTCAGCTGCAGTTGCTCCCTGTTTGGGCCACCTGACCTGACCAACTCCTGCTCTGCTTCTGATAATTTACATTGA
AGGGATCATGCGACGGCGGAGAATTCTGCATCGCCAGAGGCCTCTACGGGATCTATGGACTCGAAAGCCTTGTCTAGCGT
CGACGACAAGGAGGGAGATGAAGATGACGGTATTATTCTAGTAGCCTCTGTCTCTGTGCT-GAGCTGGAAACAGCTCAGG
CAAAACTGAGACACTGACATTCTTCCTCTGACGCCTATGCAGATTGGGAGGCTATTGCGGACCGAGGCGATGAGACACCG
GTGCGCCCCCTCATGCAAGAGGCGAGGGTGACAACACCTTGTAGTTCTTCAGAGAAAAGTGGCACTTCATCTTCAGGGAC
CAAGAGGAGGGGAAGGGGTTCTTTTCTCTATGATAAGAGTGTTTTATACAGCGACCAGTGCGGTTCAGAGAGGGATCTGG
ATGACAAAGGGTCTGATCCAGCTCGTGGTGGATCAAAGGGTCATGCGGATGAAAAAGATAATAAGGATGGTAATTTATTC
AGGATGACTAGTCTTCTCTGTCTAGTTGGCTTGCTCACGGTGGGTAAACTAAACTCTTGTTCTTTTTGTTTGGTTTTGCA
GCTGCAAAACGATTTGGGACAAGGCACGCGCTTGTTCTTTACGACTTCCCACCTAGCACACGCACAACAGATTTGGAAAG
GATCTTTGAGAAGTTTGGAGACCATGGAGTTGCCGTCCGCTGGGTCAATGATTCAGTTGCACTTGCAGTTTTCCGGACCC
CGTCATCTGGTAATTTGGTTGTTACACTTACTTCTAGTAATCTTTCTGTATGTTTCTTCGTATACCTTGATCTAGTAACT
GTTGCCACATTCTTGTGTAACCTAGACTTTTTTATTATCGAACTGTACAAGTACACAACTCCACCTGTGGAAGCAAAGCT
TTGATGTCAAATATGGTGCATTGGACAAGCATTATTTCCATTTTCATAATTATTTCCGTCAGAAGGGCAGTTCTCCAGAT
TTTTTAGCTAAACTGTTATGATAGCTAACCATAACTCCATAGCTAAATTATTAGAGGGAACCATTACAATCCCCTTCTTC
CAACTCGGCTGTGCGGGACTTTGTTTGTTTCATGATATATGTGTAATTTTGATATGTGCGCTCAGTCAAAACATGACAGT
TATGAAGTCCAACCTAGACAGCAAA-TGCATAATTGATTATTAGTCTTTGGTTTATTGCTCAAGCTATTCACTGTCGTTC
TGGTTCAGTCTTTCTCCATTCTCTTGGACCTTAGATCTTTGTGCTGATCACATGAACTTCCAAGCTTTTTATTACTTATG
TTTTCTGGCTTTAATCGATGCATTCTGATCGCTTCATTCTGGCCTATTGTACTGGAGCTAATGAGCCACAGGCTTCTGTG
CCTCCAAGATACAATGTGCAAAACATGATCAAAGAGAAAAAGTACAAATTGG-ACAGTTCCCTTATCCCAATTAGGTTGC
ATTGTACCA--TTTATTTCATGATGTATGTGTAATGTTGATATGTGTGCATACAGAACATGGTATTT------------C
TACAGAGCAGAATGCAAAATTTAGTAGGGAGCAGAATTCATGATTTAGTAGAAAGCAGAATGCATAGTTTACTC-TAGTC
TTGGTTCATCGTTGAAGCTTATACTTTGATGATTGTTCAACCTTTTTTCCCATCCTGCTGAAACTTGAACTTCATGCTGA
TGTTATGAACTTGCAAGGTGTCTGTACTTCTGTTTTCTGGCTTTATTGATTCTATTCTGGCCTATTGACCTGTTGGCCTG
TTGTCATGTACTCCTGTAGCTAAGGAGGCACAAGCTTGCGTGCCTCCAAGATACAAAGTACGGTCACTAAAGGATAATGA
CGATCTCTTGGCAAAAATCGACGGTACAGGTAACAGCTTGTTCCTTGTGCTAATCCTTTTCAGCTTGATCTTCTTGTCCC
TAAGGATCGTGTGTAGTTCATAGCTCATACCTTCCACCTTATGTTGTTTC-CATGTTGAATTGCAGACCTAGAACCGCCG
ACGCCAAGACCAAAGACGTCCGCGAGAACGGCGCAGAGGCTGATCGCCCACGGGATGGGGCTAAAGCAGTTCACGACCAT
CGATGCAGGCGAGCGGAAGGAGCAGGAGGAGGCGAGGAGGAGCCGGATCACCGCCCGGCAAGCTGCGCGCGATGATGCCT
GGGGTGAGGACTGAGGACTGCCTGGCTGTCCGAGAACTGCTGTCGCTGGCTGGCGTGCGCGGCGCCGCCTCCTGCCGGGC
TGCTCCCAGTCAAACCT-----------------------------------CTGGGTTTGTTTCACACGTATCACGGGG
GTGTTTAAATTACATGTTGATGGTGTTGTTTGAGTGGCGGTGATGGTATCCCTGGTTTCATTGGATTTTACTGTGGTTTC
CCACTCCCAGGATTGTAATGTCAGAGGTGCAGAGGCTGGGAGGCTGTTGTGGGAAAGAAAAATAAACCTTGTTT-----A
CCACAAATTAAT--------------------------------------------------------------------
--------------------------------------TTAAGTGCTATGTGCCTAAAGTGATTTACCTGAATTTTCCGG
GGAAGCCATAAGACCAAGCAAGATTTCGACTACTGGGAGAGGCACGTACTGCGGTACGTTTCACGTGGCGAGGAGTGCTC
GAGCTGCTGGGCTCCATCCAAGATTGTTCCCTCCATGGCGGCCTCTCCTGCTGAAAGTGCGTCGCTTGGTGTCGTTCCTG
GCTGAGGATCTAGCCATAGACGAGGCTGAGGTGCTTAGGACAGTGCGAGGCCCGGCGAAAAAGTTGAAGGATGACGTAAA
GTACAACATGGATGCCATCAAACCTAATGGCGAACCAAGCGAGCCTAAGAAGAATGCGGGCAAGTTCGTTCGTCAGTGTG
GAGTTCTTGTGAAGGACCAAATTCCGATCGCCATTCAAGAATGGAAAAAGCAAGCAAAGGAACGTCCAGACCTTATTTTT
GTCGACCAAAGAGCAAAAGATCGGCTTTGGGAATCTCTCATGTCACATTTCACCCTAACAGATCATTTCACAGATGCAGA
TGTGCAGAAAATCAAGGACGCTGCTCTTAGAAAGATGGCAGTTGCATTCAACAACCACAAGAAAAGTATATGGGCCAAAT
ACGTCGAAGGAGGAAAGAAGACTCCAGAAGATGGCGGTTGCAAAGTCCTAAGCGAAGGAAACATTACCGGTTTAAGGTCA
TGCTATTAAACCGGACCATTGATTCAAAGATAAAATGCTA
>chr3B_221
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ACTACGGCGAGGCATTACTC
AAGATCCGTCCATCCGAAGAGAGGGAGGAGTGGAAGAAGATGAGGACAAAGCAGTGCGTAAGAGGATGTGTTGCCTCACC
GTCACCCTCAGCGG-GCATGCCGCGACTGCCAAAGTCGTAGAGGGGGAGAATG-AGAGTGGGGAATGGAAGCTAGGG---
-----CTAGACATTAGGGATCTGCGGTGGGAAATTGGCTGCGAATAGGTGTATAACAATTTGTTGGACCGCGGTTACACG
AGAGGCTTGCAAGGTCCTTTTTGCAAAAGTTTTGATTCGGCAACTTCAATAGACGTCATGAACCGACGCCTCGTACGAGT
CAACCGCCCAGTCATCGGTTTAAACCCAGCCAGACCGATTTTGGACCACAGTGGCCGCGCAAGACAAGCGTGCCTCTTTT
CGTTGTCAACCAACCAGTCGTTGGATGAAAG-TGTACATACATGTCGAGTGCTAC-CAGTGTAATTTACTCTTTTAATTT
GTTC--------GAATAAGAAGTTTTAGAGAAGGGTATCAGCAAAAAAAAAAGGTTTTAGAGAAGAGAATGGTCCAATTA
GTAAGGG--------------------AAGCGCAAGCACCCCTC--------------AAGCAAAGCATCATCACCACAA
AATTAG------------------------------------CTGTGTGCGGGACCCACACTTCA-GCCC----------
------------ACTACCGTCTCCCACCTGTGTACAGTCCACGCGAGAGACCAGCCCAGCCTACCCCCACCGATGGACGC
GGCGGCGGCGGCGGC------CGGCGGCCACCGCTGGACGGAGGAGGTGGACGACCTGGTGGACGCCGGGGACGTCGACG
GCGCCATCTCCCTCCTCGAGTCTGTCGTCTCCAGCCTCTCCACCGCCGCCTCCCCGCCTCG---GGCGGGCGCCGATCTC
CGCCTCGCCACGGCGCTCGGCGACCTCGCCGGCCTCCACGCCTCCCGCGGCAACACGCTCCAGGCCGACGCCATCCGCTC
CCGCGCCATCGTCCTCCGCCTCCGCGCCCAGAAAGAAGCCCCCCAGCCCCAGGCCCTAGGGTTTGCTCCTCCTCCTCCCC
CAAGCTCTGTTCTTGCTTCTGAACCGAATCTTGGCCTGCTCGACCTGGACTTGCCAATTTGCAATTTTTTAGCTGTTTTC
TCTGTAAATTCGAGTAGCTTCTAGCTCGCGATCTCGTAGATGTCAGAGCACGGATCACGCAAATGTGGCACACGATCTGA
ACAAACTCAGCTGCAGCTGCTCCCTGTTTGGGCCATCTGACCTGACTAACTCCTGCTCTGCTTCTGATAATGTACATTGA
AGGGATCATGCGGCAACGGAGAATTCTGCATCGCCGGAGGCTGCTACGGGATCCAAGGACTCGAAAGCCTCAGCTAGCGT
CGACAAGAAGGACGAAGATGAAGACGATGGTATTATTCTAGTGGCCTCTGTCTCTGTGCT-AAGCTGAAAACAGCTCAGG
CAAAACTGAGACATTAACATTCTTCCTCTGACGCATATGCAGATTGGGAGGCTATTGCGGACCGTGGCGACGAGACGCCG
GTGCGCCCCCTCGTGCAAGAGGCGAGGGTGACAACACCTTGTAGTTCTTCAGAGAAAAGTAGCACTTCATCTTCAGGGAC
CAAGAGGAGGGGAAGGGGTTCTTTTCTTTATGATAAGAGTGTTCTGTACAGCGACCAGTGCGCTTCAGAGAGGGATCTGG
ATGACAAGGGGTCTGATCCAGCTCATGGTCGATCAAAGGGTCGTGCGGATGAGAAAGATAATAAGGATGGTAATTTATTC
AGGATGACTAGTCTTCTCTGTCTAGTTAGCTTGCTCATGGTGGGTAAACTAAACTCTTGTTCTTT-TGTTTGGTTTTGCA
GCTGCAAAACGATTTGGGACAAGGCATGCCCTTGTTCTTTACGACTTCCCACCTAGTACACGCACAACAGATTTGGAAAG
GATTTTTGAGAAGTTTGGAGACCATGGAGTTGCCATCCGCTGGGTCAATGATTCTGTTGCACTTGCAGTTTTCCGGACCC
CATCATCTGGTAATTTGATTCTGATAGTTACTTCTGATAATCTTTCTGCATGTTTCTTCGTATTCCATGATCTAGAAACT
GTCGCCACATTCTTGTTTAACCTAGACTTTTGTATTATTGAAATGTATACGTACACAACTCCACCTATGGAAGCAAAGCT
CTGATGTCAAATAAGATGCATTGGACAAGCATTATTTCCATTTTCATAATTATTTCCTGCCGAAGGGCAGTTCCCCAGA-
TTTTCATTGTGAGGGCA-------------------------CTAAATTAATAGAGGAAATCATTGTAATTCCTTTTTTC
CAATTAGGCCGCGTGGGACTTTGTTTATTTCGTGATATATGTGTAATTTTGATATCTATGAG-----AAAACATGACAGT
TATGAAGTCCAACCTAGATAGCAAAATGCATAATTGACTATTAGACTTTC-TTTATTGCTCAAGCTAT--ACTGTTGTGC
AGGTTCAGTGTTCTTCCATTGTTTTGGACCATAGAACTTTGTGCTGATTATATGAACTTGCAAGATTTCTAT-ACTTATG
TTCCCTGGTTCTAATCGATGCATTCTGACCGCTTCATTCTGGCCTATTGACCTGTAGCTAACTGGTCACAAGCTTGTGTG
CTTCCC----ACAAAGTACAAAACATGATATG-------AAGTACAAATTGGCACACATCCCTTATTCCAATTAGGTTAC
GTGACACTTTGTTTATCTCATGATGTATGCGTAATTTTGATGCACGAGCATACAAAAAATGGTATTCCTGAAGTCCAATG
CTGAAAGCAGAATGCATA---------------------ATAATTTTGTAGAAAGCAGAGTACATAATTTACTGTTAGTC
TTGGTTTATTGTTGAAGCTTATACTTTCATGCTGGTTCAGCG---TTTTCCATCCTGCTGGTACTTAGAACTTATGCTGA
TGATACGAACTTGCAAGGTCTCTGTACTTCTGTTTTCTGGCTTTATTGATTCTATTCTGGCCTATTGACCTGTTGGCCTG
TTGTCATGTACTCCTGTAGCTAAGGAGGCACAAGCTTCCGTGCCTCCAAGATACAAAGTACGGCCACTAAAGGATAATGA
CGATCTTTTGGCAAAAATCGATGGTACAGGTAACAGCTTGTTCCTTGTGATGATCCTTTTCAGTTTGATCTTCTTCTCCC
TAAGGATCATGTGTAGTTCATAGCTCATACCTTCCACCGTATGTTGTTTC-CATGTTGAACTGCAGACCTAGAACCGCCG
ACGCCGAGGCCGAAGACGTCGGCGAGAACGGCGCAGAGGCTGATCGCCCACGGGATGGGACTAAAGCAGTTCACGACCAT
GGATGCAGGCGAGCGGAAAGAGCAGGAGGAGGCAAGGAGGAGCCGGATCACCGCCCGACAAGCTGCGCGCGACGATGCCT
GGGGTGAGGACTGAGGACTGCCTGGCTGTCCGAGAACTGCTGTCGCTGCCTGGCCTGCGCGGCGCCGCCTCCTGCCAGGC
TGCTCCCGGGCCTTGCTTTCTTACACGAGTGTGCTCCCGTTAAACCTCTGTGCTGGGTTTGTTTCACACGTGTCAGGGGT
GTGCTTGAATTACGTGTGGATGGTGTTGTTTGAGTGGTGATGCTGCCATCCCTGGATTCATTGGATTTTACTGTGGTTTC
CCACTCCCAGGATTGTGATGTCAGAGCTGCAGAGGTTGGGAGGCTGGTGTGGGAAAGAAAAATAAACCTTGTTT-----A
CAACAAATTAATGTACTCCCTCCGTCCACTTTTGTAAGTCGTTTTAGACAGCTCAAAATGTGCTGTTTTGCACATTGTCT
GAAATGTCTTCAAGGTCTTATAAAAATGAACAGAGGGAGTAAGTGCTATGTGCCTAAAATGATTTACATGAATTTTTCTG
GGAAGCCATAAGACCAAGCAAGATTTCGGCTACCGGGAGA------------GGGACGTCTCACGTGGCGAGGAGTGCTC
GAGCTGCTGGGTTCCATCTTAGATTGTTCCCTCCAAT---GCCTCTCCTGCTGAAAGTGCGTCGCATGGTGTCGTTCCTG
GCTGAGGATCTAGCCATAGATGAGGCTGAGGTGCTT--------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>chr3A_625
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------TTTT
CCTTGT----CAACCAGTCGTTGGATGAAAG-TGTACATACGTGTCGAGTGCTAC-CGGTGTAATTTACTCTTTTAGTTT
GTTTGAAT-----AATAACAAGTTTTAGAGAAGGGTATCGGTAAAAAAAA---GTTTTAGAGTAGAGAATGGTCCAATTA
TGAGAAATTGATTCAGCAACTTTAGCAAAGCATAGGCACACCTCAAAAACAAAAGCAAAAGCAAAGCATAAGCAGCACAA
AATGAGCTGTGACATGAATTTTGTAGCATAAGACACACACACCTGTGTGCGGGGCCCACACTTCAGGCCCCCGACTGCCT
GAGTTGCCTACCACTAGCGTCTCCCACCTGTCTACAGTCCACGCGAGAGTCCAGCCCAGCCTACCCC-ACCGATGGACGC
GGCGG---------CGGCGGCCGGCGGCCACCGCTGGACGGAGGAGGTGGACGACCTGGTGGACGCCGGCGACGTCGACG
GGGCCATCTCCCTCCTCGAGTCCGTCGTCTCCAGCCTCTCCACCGCCGCCCCCTCGCCTCCGC---CGGGCGCCGATCTC
CGCCTCGCCACGGCGCTCGGCGACCTCGCCGGCCTCCACGCCTCCCGCGGCAACACCCTCCAGGCCGACGCCATCCGCTC
CCGCGCCATCGTCCTCCGCCTCCGCGCCGAGAAAGAAGCCCCCCAGCCCCAGTCCCTAGGGTTTGTTCCTCCTCCTCTCC
CAAGCTCTGTTCTTGCTTCTGAACCGAATCTTGGCCTGCTCGACCTGGACTTGCCAATTTGCAAAAATTGTGATGTTTTC
TCTGTAAATTC---TAGCTTCTAGCTCAGGATCTCGTAGATGTCAGAGCACGAATCACGCAAATGTGGCACACGATCTGA
ACAAATTCAGCTGCAGTTGCTCCCTGCTTGGGCCA-----CCTGACTAACTCCTGCTCTGCTTCTGATAATGTACATTGA
AGGGATCATGCGACGGCGGAGAATTCTGCATCGCCAGAGGCTGCTACGGGATCTAAGGACTCGAAAGCTTCAGCTAGCAT
CGACGGGAAGGACGAAGATGAAGATGATGGTATTATTCTAGTAGCCTCTGTCTCTGTGCTTAAGCTGGAAACAGCTC-GG
AAAAACTGAGACTTTAACATTCTTCCTCTGACGCATATGCAGATTGGGAGGCTATTGCGGACCGTGGCGACGAGACACCG
GTGCGCCCCCTCGTGCAAGAGGCGAGGGTGACAACACCTTGTAGTTCTTCAGAGAAAAGTAGCACTTCATCTTCAGGGAC
CAAGAGGAGGGGAAGGGGTTCCTTTCTTTATGATAAGAGTGTTCTGTACAGCGACCAGTGCGGTTCAGAGAGGGATCTGG
ATGACAAAGGGTCTGATCCAGCTCATGGTGGATCAAAGGATCATGCGGATGAGAAGGATAACAAGGATGGTAATTTATTC
AGGATGACTAATCTTCTCTGTCTAGTTAGCTTGCTCATCGTGGGTAAACTAAACTCTTGCTCTG--TGTTTGGTTTTGCA
GCTGCAAAACGATTTGGGACAAGGCACGCCCTTGTTCTTTATGACTTCGCACCTAGCACACGCACAACAGATTTGGAAAG
GATCTTTGAGAAGTTTGGAGACCATGGAGTTGCCATCCGCTGGGTCAATGATTCTGTTGCACTTGCAGTTTTCCGGACCC
CATCATCTGGTAATTTGGTTGTTACACTTACTTGGAGTAGTCTTTCTGTATCTTTCTTCGTATACCTTGATCTAGAAACT
GTTGCCACATTCTTGTGTAACCTAGACTTTTTTATTATCGAAATGTACAAGTACACGACTCCACCTGTGGAAGCAAAGCT
CTGATGTCAAATATGGTGCATTGGACAAGCATTATTTTCATTTTCACAATTATTTCCTGCAGAAGGGCGGTTCTCCAGA-
TTTTTGGCCAAACTGTTATGATAGCTCACCGTAAATCCATGGCTAAATTATTAGAGGAAACCATTGCAATCCCCTTGTTC
CAACTCGGCTGTGCGGGACTTTGTTGGTTTCATGATATGTGTGTAATTTTGATATGTGCGCTCAGTCAAAACATGACAGT
TATGAAGTCCAACCTAGACAGCAAG-CGCATAATTGACTATTAGTCTTTGGTTTATTGCTCAAGCTATTCACTGTCGTGC
TGGTTCAGTGTTCCTTCAGTCTTTTGAACCTTAGCT-TTTGTGCTGATCATATGAACTTGCAAGCTTTTTATTACTTACG
TTTTCTGGCTTTAATCGATGCATTCTGATTGCTTCATTCTGACTTATTGCACTGTAGCTAATGAGCCACAGGTTTCTGTG
CCTCCAAGATACAATGTACAAAGCATGATTAAAGAGAAAAAGTACAAATTGACACAGTTCCCTTATCCCAATTAGGTTGT
GTTCCACCA--TTTAAATCATGATGTATGTGTAATGTTGATATGTGTGCATACAGAACATGGTATTTCTGAAGTCCGAAC
TACAGAGCAGAATGCATAATTTCGTAGGGAGCAGAATTCATGATTTAGTAGAAAGCAGAATGCATAATTTACTGTTAGTC
TCGGTTCATTGTTGAAGCTTATACTTTCATGCTTGTTCAACCTTTTTTCCCATCCTGCTGAAACTTGAACTTCATGCTGA
TGATTTGAACTTGCAAGGCCTCTGCACTTCTGTTTTCTGGCTTTATTGATTCTATTCTGGCCTATTGACATGTTGGCCTG
TTGTCATGTACGACTGTAGCTAAGGAGGCACAAGCTTGCGTGCCTCCAAGATACAAAGTACGGTCACTAAAGGATAATGA
CGATCTCTTGGCAAAAATCGACGGTACAGGTAACAGCTTGTTCCTTGTGCTAATCCTTTTCAGTTTAATCTTCTTCTCCC
TAGGGATCGTGTGTAGTGCATAGCTCCTTACTTCCATCTTATGTTGCTTTTCATGTTGAACTGCAGACCTAGAACCGCCG
ACACCAAGACCAAAGACATCCGCGAGAACGGCGCAGAGGCTGATCGCCCACGGGATGGGGCTAAAGCAGTTCACGACCAT
CGATGCAGGTGAGCGGAAGGAGCAGGAGGAGGCGAGGAGGAGCCGGATCACCGCCCGACAAGCTGCGCGCGATGATGCCT
GGGGTGAGGACTGAGGACTGGCTGGCTGTCCGAGAACTGCTGTCGCTGGCTGGCGTGCGGCAT--CGCCTCCTGCCGGGC
TGCTCCCAGGCCTTGCTTTCTTACACGAGTTAGCTCCAGTCAAACCTCTGTACTGGGTTTGTTTCACACGTATCACGGGG
GTGCTTAAATTACATGTTGATGGTGTTGTTTGGGTGGCGATGATGGCATCCCTGGTTTCATTGGATTTTACTGTGGTTTC
CCACTCCCAAGATTGTAATGTCAGAGGTGCAGAGGCTGGGTGGTTGGTGTGGGAAAGAAAAATAAACCTTGTTTTTTTTA
CCAGAAATTAAT--------------------------------------------------------------------
--------------------------------------GTAAGTGCTATGTGCCTAAAGTGATT----------------
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----------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S---S----S----
S------------S-----------------S--S-S----------------S---SS---------S-S---------
----S---SS----S-----------------S---S-------SS-----SSS-------S--------------SSSS
SSSSS----S----------S----S--SS-------S--S----S----------S---S-S-----S-------S-S-
-----------------------------S--------SS------SS---S-S-S--------S-------------S-
----SS---SS----------S------S-S-S----S----------S-----SS------------------SS----
-S-S---------SS--SS------------S-------------S---------S-----------------------S
------S-SSSS-------------------------S-SS--------------------S----S-----------S-
------------------------------------------------------S----SSSS--------------S--
------------------S---------SS---------------------------------S----------------
--------------S-----------S-------------------------------------------------S---
------------------------S-----------------------------------S-------------------
-------------------------S-------------------------------------S----------------
--------------------------------------------------S-----------------------------
--------------------------------------------S-------------------------------S---
-------------------------------------------------------------S------------------
-----------------------------------------SS----------------S--------------------
-----------------------------------S----------S------------------------S--------
-----------------------------------------SS------------S--------------SSS-------
------S-----S-S------------S---------------------------------S------------------
-------------S-S------------------S-----------------------------S-----S---------
------------S-----------------------------------------------S-------------------
---------------------------S---------------S-S----------------------------------
------------------------S---------------------------S---------------------------
---------------------------S---------S---------------------------S--------------
-----------------------------S--------------------------------------------------
----------------------------------S-------------------S-------------------------
-S-------------------------------------------------------------------------S----
------------------------------------------S-------------------------------------
S--------------------------------------------------------SS--------------------S
--------S-----------------S---S---S-----S----------------S-------S----------S---
--------------------------------------------------------------------------------
-------------------------------------S----------------------------------------S-
---------S--S---------S---------------------------S--------S--------------------
-------------------------------------------------S----S-------------------------
-----------------S-----------S--------------------------------------------------
S--SS-----------S---------------------------------------------------------------
----------------S-----S-------------------------------------------S------S------
---------S-----------------S---S------------------------------------------------
--S----------------S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-----------S----
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------S-SSSS-----------------------------------------------------------------
---S-----------------------------------S------S---------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------S----------------------------S--------S-S-
----------------------------S----S------SSSSSSSSSSSS--S----S--------------------
-----------S------SS---------------SSSSS-------------------------S--------------
--------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_571
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGTACGACT
CAACAACCCCA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------
>reverse_1671
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TGTCTAGCGT
CGACGACAAG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>forward_987
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CTACCACCACCGTCTCCCAT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>reverse_1964
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TTATACAGCGACCAGTGCGG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>forward_1693
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTAGCGT
CGACGACAAGGAG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>reverse_2538
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------GTCAGAAGGGCAGTTCTCCA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>forward_2025
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----AAAGGGTCTGATCCAGCTCG-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------
>reverse_3581
--------------------------------------------------------------------------------
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------------------------------------------------------------TTGCAGACCTAGAACCGCC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------
>forward_2295
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------TCCGCTGGGTCAATGATTCA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>reverse_4451
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------CCCGGCGAAAAAGTTGAAGG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
