>input_sequence_28810
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--------------------------------------------------------------ATGCACCCTGTGTCGATC
TCCTTTCAACCCTTCACTGCAACTCCCGCGGGCGATTTTCCCTCGAGGTAAGTTTTTGCCTGCTGGACCTGTATTCAGTT
TCTTGGCCATCTCTTGTGTTTCCTTTAATGTTAACCCTGTTTCTTGTTTTTC-GGCATTAGGACCACTAATGTGAGGTCT
CGCGGTGATTTTGTCAAGTTGCCAACAGTTGGAAGAAGTAGTGGATACCGTGCCATGAATTCCGGACCAAATTCTGCTTC
CAGGTCTGCAACGACTGGGGAACAGGATTTTGCTGTGGGAGAGAATGATGGTGTGATCATAGTCGACCATGGGTCACGGC
GACAGGAATCTAATCTCATGCTAAGTAATGGACCGATTATTTTCCTTGA-ATTTC-TGGTGTTTCCCATGGTGCTTATCT
TG---AGTAATTTCTTGAAAATTGCAGACGATTTTGTTACTATGTTCAGGGC--AAGGACTGGATACAGGATTGTTGAGC
CTGCTCACATGGTATGCTTACTGTTCTTGCAA-TTTTGTGGAATGGCTTTTATGATTAGGGAGGGAGGTGCAGATTCTAA
ATTTATTAAACTCTGCTTGAAGCCTGCAG-----CCCTTTACCAATTTTATGACAGTAAACTGGCAATCAGTAAATCAAC
TTGTAATTTCGATTTCAGGTTACATAAAGCATTTCTGGATTTAATTTTCCCTT-GCTTGCCACTGAACATGGCTACAGAT
TTCTAATGGAGTGCAGACTATTCTTTGAAACTACCTTGTACTGGCCAACTCACAAGACCGCTCT-CCTGCGGAAAAATAA
AAAA-----TAACTTACATGGTCACTCACTTAGATTTCTCTATCTGACATGATTTTATTCAGTAGCTTCTTTCTATTTAC
GAATGAGAATCTGTAGATATACCGCTGTACTTTCTTATTTTCTTCTGTTAGCGACGGGAGAATTTCCAGGATCACTCATT
TGGATTCTCTGACATTCCTCTCATTTGAGCCCATGCATATTTTGTTGGCAACATACACAAAGGAACACTT-------AGG
TTAACATCACATGGTATTCTGGTTGAGGATACTAAATATATTTAATGGTC------------------------------
--------ACTGTTAATGTTCCTCATGTTGCAGTTTCTGATGCTTTGTAGTAACAATGTGACATAAGTAATAT-AAATTC
GTTTCCAAAGTAGTGATTTAGAAATATTTCTGAAGACATTGTTTTCACAAGTAGTGTTTCAAAATTATTCCTAAAAGATA
TTTGTGGCATAATTGGGAGTTTACTTGTTGATTGAAACCATTGCTCGGAGCTATTTTAACAAATA-------TGGTATGA
TAATACTATTCTAGCAACACATTGGCTTTTTATGTTGGCATCTATTTGTCCATTCT----TTGCTATTTGGTTGTACTGC
TAAATTATATATGGGCTGGAGACTCTGGGGCAAATAAATCATATTTATCTAGTTCTTCTTTCTA----------------
----------------------------------TGCATTTGGCAAAATGAAGGAGCTCGCTGAGCCTACCATTAAAGAA
GCATTTGGAAAATGTGTCCAGCAAGGCGCATCCCGCATTATTGTCAGCCCATATTTCCTTTCACCTGGACGGCACTGGAA
ACAAGTAAGATTTTCAGTCATTTAACATCGGTA----------------------------TTCAGTTTATTAAAATGTT
CAACGCAGAAGTAGGTAGCGGTTTCTGTGTAATATCTTAATGCTTA----------------------------------
-----------------------------------------------------------------------CATAGCTAT
AGTAAGACAATATTTCTCATTCAATTCTGCATT-T------TTTTTCTCAGGATATACCTTCTTTAGCAGCAGAAGCCTC
TAAAGAGCACTCTAACGTGGCCTACATTGTCACTGCTCCTCTTGGATTGCATGAGCTTATGGTGGTATGTGCTCATTAAT
TCCCCCATAGTCTATCACACAATGCATTGTGCAGTC-----TC----TCTTATGAGAAC---TACTCCCTCTATTCCAAA
ATAGATGACTCAACTTTGTACTAACTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTAGTTGTTAATC-AA
AAGTAAACTAGGTGCTCGCTGAAA-GTTGGGAACTGCATCTTTTAGACAACTTATTCTTCCAGCCCTCCAGAAAAATCAT
GAAAAGGAATGTGGATTTTCCTTGATAAGTAGATCTACTAAAACTTCCACCCTTTTGAAT--TTCCTACTTTTTTGTTGA
AGGGAATGTTGAACTTCTCTACTAGAAAGGCATACTAG--TTTTTTTTCCTGAACAATGAATCCAAGAGTTATTGAACAC
GACGGATTAATCTTTCATTACCTTAGCATCCCATCATGTTACTGTGTTACATTCTTGTAAATTTTACTTGTAGATCACTG
TGGTATGTGATTCTATACTGTATCAGTATGTCACTTTGTTGCTATATTAGTAAGCGGTATGCCACT-------------A
ATCTGAAATTATCGTGATAACCTGCTTTAATTTGGCAAAATGGTATTTATAGATAGCAAACCAAA---------------
---------------------------------------------------------------TCGAATATACCACCTAC
TCCACTGTTCATATTATCCAAGGCAATCTCCTCTCTTTTTTTTGACAATCAACAAGAGCAATCTCCTCTTAATACAAGGG
GCGACGCCAGCAATGGTTGGTGAGTTGCTCCAATCATTCAGTATCATCTCATAGTAGATT-GGTTACAAATTGCACGGCA
AAAATGTTTCTGCAGGATGTTATGAATGATCGCATCAAGTACTGCCTGAGGCATGTTGCAGGCGATGCCGGTGAGTGTGC
AGTATGTGCTGGGACTGGAAAGTGCCACCTCTACTCCTGA----------------------------------------
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>chr5A_1_TraesCS5A01G063800
CACAATAAAGACATCTTTTTTGTGGAATTGAAAAAGGTATAGCCGATTCGACATTCCTTGGCACAGAACGGCGAATAGGA
TTTCCGCACAGGGCAGCACTACG----CACACACGTCAATGTCTTGCCCAGGACCCAAACCAAATAGGCCCAGAACTGTT
GACACGTCACCAGCCTCCCTCCACCCCCACC-ACGCCCTCTCTCGTCTCGCTCA--CTGTCTCGCAATCGTTCCTCTCCA
CCCACTGTCAT---CAAGAAAAAAAGAATCGTTCCTCTCCACCTCCCTGACGCGAGCGCGGCA---CCGGCGGCCGACGC
AGCACCGGCGGCGGAGGTATGCTCTCCTCCCACCCGAAACTTTCCCCTATCCCACCT-ATTATCTTCCGTTTCTATAAGT
TGAGCCCTCTAAGACCTAGTTCCGTGAGATGGAATTTGGCAATCCCTTTCGGCACCAATGACAG-CCCTACTTCAGAGGC
ACCTCAAACAGATGTCCATGAACTTGGTTGGGCATTTCACCGGCAGCCACTCGATCCAGTA------------CGATTGT
AGCACGATTCTTGTTCCTAGTA--------------CTAAGTGGGTAACTTACTTTGGTGATAGTTATAGTCCCATTCAA
ATTTCATTAAAAATGAATTTGCGTGCAATGGGTTAGCGCTAGTTACTAGTGCAAGTAATTTCAGATGAGATGCGACTCTA
TTTTTTTCCGCCTATCAGATGCCACTCTATTTAAATGTAATTAATTTGATTTTGCCAACTGAAAGTGGATCTGCTCATAT
GTAAATACAGGGCCTCCCGAGCCTTCTAGGCAGTCATCTCTTAGATGCCTTTTTGTATCCTGCGTCTCTGATAGC-----
--------------------------------------------------------CATGTTTTTCATCAGGAATCATCA
TCCACACTGAAATATTCTTTTGTACAGAAGGTGCCTGTTAGATCGACTGTCTACATTGCCTTTTGAGAAAACATAGAGGG
ATCTTTCTGGCATCTGCTCTTACGTGAAGCTAGAATCGCGGAGGGGGTGCTCTGATAGGTCTATGCACCCTGTGTCGATC
TCCTTTCAACCCTTCACTGCAACTCCCGCGGGCGATTTTCCCTCGAGGTAAGTTTTTGCCTGCTGGACCTGTATTCAGTT
TCTTGGCCATCTCTTGTGTTTCCTTTAATGTTAACCCTGTTTCTTGTTTTTC-GGCATTAGGACCACTAATGTGAGGTCT
CGCGGTGATTTTGTCAAGTTGCCAACAGTTGGAAGAAGTAGTGGATACCGTGCCATGAATTCCGGACCAAATTCTGCTTC
CAGGTCTGCAACGACTGGGGAACAGGATTTTGCTGTGGGAGAGAATGATGGTGTGATCATAGTCGACCATGGGTCACGGC
GACAGGAATCTAATCTCATGCTAAGTAATGGACCGATTATTTTCCTTGA-ATTTC-TGGTGTTTCCCATGGTGCTTATCT
TG---AGTAATTTCTTGAAAATTGCAGACGATTTTGTTACTATGTTCAGGGC--AAGGACTGGATACAGGATTGTTGAGC
CTGCTCACATGGTATGCTTACTGTTCTTGCAA-TTTTGTGGAATGGCTTTTATGATTAGGGAGGGAGGTGCAGATTCTAA
ATTTATTAAACTCTGCTTGAAGCCTGCAG-----CCCTTTACCAATTTTATGACAGTAAACTGGCAATCAGTAAATCAAC
TTGTAATTTCGATTTCAGGTTACATAAAGCATTTCTGGATTTAATTTTCCCTT-GCTTGCCACTGAACATGGCTACAGAT
TTCTAATGGAGTGCAGACTATTCTTTGAAACTACCTTGTACTGGCCAACTCACAAGACCGCTCT-CCTGCGGAAAAATAA
AAAA-----TAACTTACATGGTCACTCACTTAGATTTCTCTATCTGACATGATTTTATTCAGTAGCTTCTTTCTATTTAC
GAATGAGAATCTGTAGATATACCGCTGTACTTTCTTATTTTCTTCTGTTAGCGACGGGAGAATTTCCAGGATCACTCATT
TGGATTCTCTGACATTCCTCTCATTTGAGCCCATGCATATTTTGTTGGCAACATACACAAAGGAACACTT-------AGG
TTAACATCACATGGTATTCTGGTTGAGGATACTAAATATATTTAATGGTC------------------------------
--------ACTGTTAATGTTCCTCATGTTGCAGTTTCTGATGCTTTGTAGTAACAATGTGACATAAGTAATAT-AAATTC
GTTTCCAAAGTAGTGATTTAGAAATATTTCTGAAGACATTGTTTTCACAAGTAGTGTTTCAAAATTATTCCTAAAAGATA
TTTGTGGCATAATTGGGAGTTTACTTGTTGATTGAAACCATTGCTCGGAGCTATTTTAACAAATA-------TGGTATGA
TAATACTATTCTAGCAACACATTGGCTTTTTATGTTGGCATCTATTTGTCCATTCT----TTGCTATTTGGTTGTACTGC
TAAATTATATATGGGCTGGAGACTCTGGGGCAAATAAATCATATTTATCTAGTTCTTCTTTCTA----------------
----------------------------------TGCATTTGGCAAAATGAAGGAGCTCGCTGAGCCTACCATTAAAGAA
GCATTTGGAAAATGTGTCCAGCAAGGCGCATCCCGCATTATTGTCAGCCCATATTTCCTTTCACCTGGACGGCACTGGAA
ACAAGTAAGATTTTCAGTCATTTAACATCGGTA----------------------------TTCAGTTTATTAAAATGTT
CAACGCAGAAGTAGGTAGCGGTTTCTGTGTAATATCTTAATGCTTA----------------------------------
-----------------------------------------------------------------------CATAGCTAT
AGTAAGACAATATTTCTCATTCAATTCTGCATT-T------TTTTTCTCAGGATATACCTTCTTTAGCAGCAGAAGCCTC
TAAAGAGCACTCTAACGTGGCCTACATTGTCACTGCTCCTCTTGGATTGCATGAGCTTATGGTGGTATGTGCTCATTAAT
TCCCCCATAGTCTATCACACAATGCATTGTGCAGTC-----TC----TCTTATGAGAAC---TACTCCCTCTATTCCAAA
ATAGATGACTCAACTTTGTACTAACTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTAGTTGTTAATC-AA
AAGTAAACTAGGTGCTCGCTGAAA-GTTGGGAACTGCATCTTTTAGACAACTTATTCTTCCAGCCCTCCAGAAAAATCAT
GAAAAGGAATGTGGATTTTCCTTGATAAGTAGATCTACTAAAACTTCCACCCTTTTGAAT--TTCCTACTTTTTTGTTGA
AGGGAATGTTGAACTTCTCTACTAGAAAGGCATACTAG--TTTTTTTTCCTGAACAATGAATCCAAGAGTTATTGAACAC
GACGGATTAATCTTTCATTACCTTAGCATCCCATCATGTTACTGTGTTACATTCTTGTAAATTTTACTTGTAGATCACTG
TGGTATGTGATTCTATACTGTATCAGTATGTCACTTTGTTGCTATATTAGTAAGCGGTATGCCACT-------------A
ATCTGAAATTATCGTGATAACCTGCTTTAATTTGGCAAAATGGTATTTATAGATAGCAAACCAAA---------------
---------------------------------------------------------------TCGAATATACCACCTAC
TCCACTGTTCATATTATCCAAGGCAATCTCCTCTCTTTTTTTTGACAATCAACAAGAGCAATCTCCTCTTAATACAAGGG
GCGACGCCAGCAATGGTTGGTGAGTTGCTCCAATCATTCAGTATCATCTCATAGTAGATT-GGTTACAAATTGCACGGCA
AAAATGTTTCTGCAGGATGTTATGAATGATCGCATCAAGTACTGCCTGAGGCATGTTGCAGGCGATGCCGGTGAGTGTGC
AGTATGTGCTGGGACTGGAAAGTGCCACCTCTACTCCTGATCGTGATGACATGAGAGTTGCTCGAAAGTCTAATCAGGAC
GCCTTGTTTTTGGCTCATTGGCAGCGCAGATTGATGGCTGAGGCCAATAATTCCATCTTGTTAACCCATGCTCCTTGTTA
TCTGCCATGCGATTAGAAAACATTGTACCAACAATGATCTTGGCGGTTTCGTTCAGCTTGTAGATCTAGAGTGTTTTCAG
CAGTCTGAACAAGAAACCATGAC----GAGTGTAAATTTGTCATGTAAATCAAA----GCCTGGTATGCACCACCAACAA
ATTTGTTATGGC-------------------------AATGTCTGGAATGACGCTGCATCGCCATCCTCCGCCAA-----
---------------------------------------TGAGTTATTCTTTCTCCCTGCTGCCT--TTTTCGCTGTCGC
TGTGTATACGCTGCCCTGCCCTGCCCTTACCGTTTATTGTTGCTTGTTGCTGCCGGACTGCCGCCTCCTCTGTTA-AAAA
TACAAGACACGTTTGATTTTCTGTAGCCTTTGACACATGATTATAATGGCAATTTCCACCAATAATATGCTTGCAAACTT
AGTACTAAAAGACATGCAACATTTTTTCTTTGCAAAACAAAAGAAAACGATGTTACTCTTGCATGCTAACTCCATATACT
TCTGCATGTATTAGCGTCAATGTTTCGTTGGCGACAAGAAAATTTATGTGTCTTAACTTACATTTTGGAATGGCGGGAGT
AGTACAAACCATCTCCATGTCATCTGCTTACAAACCATCTCCATGTCATCTGCTTCTGGTTTCGGTGGATGTTCGTTGGA
TACTTGGATCTAGGTCATCCCTGTTGTTTTCTCCCACCTAGGACCTCTATATGCATGCCACCTCTACTCACATTAGCATT
CAATCCTCAACTGCATGAAGGGTGTCATTCTTTTCGAGCATCTCTTTTATCGTTCTCCTGATTATTCGGCACTTTATTCG
CCCGGTTGTATTTGCTATGTTCTTCTTGCCCTCATGAACGCATTAAACTGACTGCTTAGTCTGTCAAGTGCGTCTTCTTA
>chr5D_81
--------------------------------------------------------------------------------
TTTCCGCACGTGGCAGCACTACGCACGCACACACCTCCATGTCTAGCCCAGGACCCAAACCAAATAGTCCCAGAAATGTT
GACACGTCACCAGCCTCCCTCCACCCT-ACC-ACGCCCTCTCTCGTCTCCCTCACGCTGTCTCGCAATCGTTCCTCTCCA
CCCACTGTCATCATCAAGAAAAAAAGAATCGTTCCTCTCCACCTCCCTGACGCGTC----GCA---CCGGCGGCCGACGC
GGCATCGGCGGCGGAGGTATGCTCCCCTCCCACCCGAAACTTCCCCCTATCCCACCT-ATTATCTTCCGTTTCTATCAGT
TGAATCCTCTAAGACCTAGTTCCGTGAGATGGAACTTAGCAGCCCCTTTGGGCACCGACGACAGCCCCTACTTCAGAGGC
ACCTCAAATAGATGTTCATGAACTTGGTTGGGCATTTCACCGGCAGTCACTCGATCCAGTTTCCCTTCGTAATCGATTGT
AGCACGATTCTTATTCCTAGTAGTATTTGGCAACAGCTCAGTAGGTAACTTACTTTGGTGATAGTTCTAGTCCCATTCAA
ATTTCATTAAAACTGAATTTGCGTGCAATGGGTTAGCTCTAGTTACCAGTGCAAGCAAGATGTCACTAGG----------
------------------------------------GTAATTAATTTGATTTTGCAAACTGT------ATCTGCTCATAT
GGAAATGCAGGGCCTCCCGAGCGTTTTAGGCAGTCATCTCTTAGATGCCTTTTTGTATCCCGCGTCT-------------
------------------------------------------------------GGCATGTCTTTCATCAGGAATTATCA
TCCACACTGAAATATTCTTTTATACAGAAGGTG-CTGTTAGATCGACTGTCTA------------AGAAAATATAGAGGG
GTCTTTCTGTCCTCTGCTCGTACCTGAAGC---AAGCGTGGAGGGGCTGCTCTAATAGGTCTATGCACCCTGTGTCAATC
TCCTTTCAACCATTCACTGCAACTCCAGCGGGCAATTTTCCCTCAAGGTAAGTTTTTGCCTGCTGGACCTGTATTCAGTT
TCTTGGCCAACTCTTGTGTTTCCTTTAATTTTAACCCTGTTTCTTGTTTTTTTGGCATTAGGACCACTAATGTGAGGTCT
CGCCGTGATTTTGTCAAGTTGCCGACAGTTGAAAGAAGTAGTGGATACCGTGCCATGAATTCCGGACCAAATTCTGCTTC
CAGGTCTGAAATGACTGGGGAACAGGATTATGCTGTGGGAGAGAATGATGGTGTGATCATAGTCGACCATGGGTCACGGC
GACAGGAATCTAATCTCATGCTAAGTAATGGACCGATTATTTTCTGTGA-ATTTTATGGTGTTTCCCATGGTGCTTATCT
TGAGTAGTAATTTCTTGAAAATTGCAGACGATTTTGTTACTATGTTCAGGGC--AAGGACTGGCTACAGGATTGTTGAGC
CTGCTCACATGGTATGCTTGTTGTTCTTGCAATTTTTGTGCAATTGCTTTTCTGATTAGGGAGGGAGGTGCAGATTCTAA
ATTTATTAAACTCTGCTTTAAGCCTGCAG-----CCCTTTGCCAATTTTATGACAGTAAACTGGCAATCAGTAAATCAAC
TTGTAATTTTGATTTCAGGTTACATAAAGCATTTCTGGATTTAATTTTCCCTT-GCTTGCCACTGAACATGGCTGCAGAT
TTCTAATGGAGTGCAGGCTATTCTTTGAAACTACCTTGTACTGGCCAACTCACAAGACCGCTCT-CTGCGG--AAAAATA
AAAA-----TAATTAACATGGTCACTCATTTAGAATTCTCTATCTGACATGATTTTATTCAGTAGATTCTTTCTATTTAC
CAATGAGAATCTGTATATATACC-------------------------------------------------------TT
TGGATTCTCTGACATTCCTCTCATTCGAGTCCATACATATTTTGTTGGCAACATCCACAAAGGAACACTTTGAGTTTAGG
TTAACATCATTTGTCAATCTAGTTGAGGATACTAACTATATTTAATGGTCTAAATCGTCAGCTTATGCGTCTAAGATAAG
CATCTGCCACTGTTAATGTTACTCATGTTGCGGTTTCTGATGCTTTGTAGTAACAATGTGACATAAGTAATTTAAAATTC
GTTTCCAAAGTACTGATTTAGAAATATTTGTGAAGACATTGTCTTCATAAGTAGTTTTTCAAAATTATTCCTAAAAGATA
TTTGTGGCATAATTGGGAGTTTACTTGTTGATTGAAAC-ATTGCTCGGAGCTATTTTAACAAATATTTAATTTGGTATGA
TAATACAATTCTAGCAACACATTGGCTTTTTATGTTGGTATCTATTTGTCCATTCT----TTGCTATTTGGTTGTACTAC
TAAACTATATATGGTCTGGAGACTCTGGGGCAAATAAATCATATTTATCTAGTTCTTTTTTCTA----------------
----------------------------------TTCATTTGACAAAATGAAGGAGCTCGCTGAGCCTACCATTAAAGAA
GCATTTGGAAAATGTGTCCAGCAAGGAGCATCCCGCATTATTGTCAGCCCATATTTCCTCTCACCTGGACGGCACTGGAA
ACAAGTAAGATTTTCAGCCATTTAACATTGGTA----------------------------TTCAGTTTATTAAAATGTT
CAATGCAGAAGTAGGTAGCGGTTTCTGTGTAATATCTTAATGCTTA----------------------------------
-----------------------------------------------------------------------CATAGCTAT
AGTAAGACAATATTTCTCATTCAATTCTGCACTGT------TTTTTCTCAGGATATACCTTCTTTAGCAGCAGAAGCCTC
TAAACAGCACTCTAACGTGGCCTACATTGTCACTGCTCCTCTTGGATTGCATGAGCTTATGGTGGTATGTGCTCATTAAT
TCCCCCATAGTCTATCACAGTTTGCATTGTGCAGTC-----TCATTTTCTTATGAGAAC---TA----------------
-------------------------------------------------------------------GTTGTTAATCGAA
AAGTAAACTAGATGCCCGCTGAAA-GTTGGAAACTGCATTTTTTAGACAACTTATTCTTCCAGCCCTCCAGAAAAATCAT
GAAAAGGAATGTGGATTTTCGTTGATAAGTAGATCTACTAAAACTTCCATCCTTTTGAAT--TTCCTAAATTTTTCTTGA
AGGGAATGTTGAACTTCTCTACTAAAAAGGCATAATGG-TTTTTTTTTTCCGCACAATGAATCAAAGAGTTATTGAACAC
GATGGATTAATTTTTCATTACCTTAGCATGCCATTATGTTACTGTGTTACATTCTTGTAAATTTTACTTGTAGATCACTG
TGGTATTTGATTCTATACTGTATCAGTATGCCACTTTGTTGCTATATTAGTAAGCGGTATGCTAGT-------------A
ATCTGAAATTATCGTGATAATCTGCTTTAATTCTGTAATATGGTATTTATAGATAGCAGACCAAA---------------
---------------------------------------------------------------TTGAATATACCACCTAC
TCCACTGTTCATATTATCCCAGGCAATCTTCTCTTTTTTTTTTGACAATCAAGAAGAGCAATCTCCTCTT----------
--------------------------------------CAGTATAATCTCAAAGTTGATT-GGCTACAAATTCCACGGCA
AACATGTTTCTGTAGGATATTATGAATGACCGCATCAAGTACTGCCTGAGGCACGTTGCAGGCGATGCCGATGAGTGTGC
AGTATGTGCTGGGACTGGAAAGTGCCACCTCTACTCCTGATGATGATGACATGTGAGCTGCTCGAAAGTCTAATCAGGAC
ACCTTGTTTTTCTCTCATTGGCAGCGCAGATTGATGGCTGAGGCCAATATTTCCATCTTGTTAACCCATGCTCCTTGTTA
TCTGCCATGTGATCAGAAAACATTGT---AACAATGATCTCGGCGGTTTTGTTCAGCTTGTAGATCTAGAGTGTTTTCAG
TAGTCTGAACAAGATACCATGACAAGAGAGTGTAAATTTGTCATGTAAATCAAACACTGCCTGGTATGCACCAC-AACAA
ATTTGTTATGCCCCTGCAAGAAAAAAAATGTTACGGAAATGTCTGGAATGACGCTCCATCGCCATCCTCTGCCTCTGAGT
TGTTCTCTCTCTGTTTTTTGTTTGTTTGCGGGGTGCCTCTGAGTTGTTCTTTCTCCCTGCTGCAACCTTTTCGCCGTCGC
TGTGTATACGCTGCCTTGCCC----------GTTTATTGTTGCTTGTTGCTGCCGGACCGCCGCCTCCTCTGTTACAAAA
TACAAGATGTTTGAATTTT-------------------------------------------------------------
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>chr5B_124
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-----------------------------------------------CCAGGACCCAAACCAAATAGCCCCAGAACTGTA
GACACGTCACCAGCCTCCCTCCACCCCCACCCACGCCCTCTCCCGTCTCGCTCACGCTGTCTCGCAATCGTTCCTCTCCA
CCCACTGTCA---TCAAGAAAAAACGAATCGTTCCTCTCCACCTCCCTGACGCGAGCGACCAAAGTCCGGCGGCCGACGC
GGCAACGGCGGCGGAGGTATGCTCCCATCCCACCCGAAACTTCCCCCTATCCCACCTTATTATCTTCCGTTTCTATCAGT
TGAACCCTCTAAGACCTAGTTCCGTGAGATGGAATTTAGCAGCCCCTTTGGGCACCGACAACAG-CCCTACTTCAGAGGC
ACCTCAAATAGATGTTCATAAATCTGGTTGGGCATTTCACCGGCAGTGACTCGACCCAGTTTCCCTTCGTAATCGACTGT
AGCACGATTCTTGTTCCTACTA------------------------------CTTTGGTGATAGTTCTAGTCCCGTTCAA
ATTTCATTAAAATTGAATTTGCGTGCAACGGGTTAGCGCTAGTTACTAGTGCAAGCAATTTCAGATGAGATGCCACTCTA
TTTAGGGGTAATT--------------------------ATTAATTTGATTTTGCCAACTGAAAGTGGATCTGCTCATAT
GGAAATACAGGGCCTCCCGAGCCTTCTAGGCAGTCATCTCTTGGATGCCTTTTTGTATCCTGCGTCTCTATTGTTCATTG
TTTTTGATATAGCTTACCACTCGTGCCAAGTGGTTGTATCCTGCGTCTCTGACAGGCGTGTTTTTCATCAGGAATTATCA
TCCACACTGAAATATTCTTTTATACAGAAGGTGCCTGTTAGATCGACTTTCTACATTGCCTTTTGAGAAAACATAGAGGG
ATCTTTCTGCCCTCTGCTCTTACCTGAAGCTAGAATCACGGAGGGGGTGCTCTGATAGGTCTATGCACCCTGTGTCGATC
TCCTTTCAACCCTTCACTGCAACTTCAGCGGGCAATTTTTCCTCAAGGTACGTTTTTGCCTGCTGGACCTGTATTCAGTT
TCTTGGCCATCTCTTGTGTTTCCTTTAATTTTAACCCTGTTTCTTGGTTTTTTGGCATTAGGACCACTAATGTGAGGTCT
CGCTGTGATTTTATCAAGTTGCTGACAGTTGGAAGAAGTAGTGGATACCGTGCCATGAATTCCGGACCAACTTCTGCTTC
CAGGTCTGAAACGACCGGGGAACAGGATTATGCTGTGGGAGAGAATGATGGTGTGATCATAGTCGACCACGGGTCACGGC
GACAGGAATCTAATCTCATGCTAAGTAATGAACCGGTTATTTTCCGTGAAATTTC-TGGTGTTTCCCATGGTGCTTATCT
TG---AGTAATTTCTTGAAAATTGCAGACGATTTTGTTGCAATGTTCAGGGC--AAGGACTGGCTACAGGATTGTTGAGC
CTGCTCACATGGTATGCTTATTGTTGTTGCAGCCCTCCACTAA-------------------------------------
----------------------------------------------TTTTTGACAGTAAGCTGGCAATCAGTAAATCAAC
TTGTAATTTCGATTTCAGGTTACATAAAGTATTTCTGGATTTAATTTTCCCTT-GCTTGCCACTGAACATGGCTACATAT
TTCTAATTGAGTGCTGGCTATTCTTTGAAACTACCTTCTACTAGCCAACTCACAAGATCACTCA---------AAAAATA
AAAAATAAGTAACTTGCATGGTCATTCATTTAGAATTCTCTATCTGACATGATTTTATTCAGTAGCTTCTTTCTATCTAC
CAATGAAAATCCGTCTATACACCGCTGTACTTTCTTATTTTCTTCTG--AGCAATGGGAGAATTTCCATGATCACTCATT
TGGATTCTCTGATGTTCCGCTTGTTCGAATCCGTACATATTTTGTTGGCTACATCCACAAAGGAACACTTTGAGTTTAGG
TTAACATCACATGGTATTCTAGTTGAGGA---TAAATATATTCAATGGTCTAAGTCGTCAGCTTATGTGTCTAAGATAAG
CATCTGCCACTACTAATGTTTCCCATGTTGCTGTTTCTGATGCTTTGTAGTGACAATGTGACATAAGTAATTTGAAATTG
TTTTCCGAAGTAGTGATTTAGAAATATTTCTGAAGACATTGTTTTTACAAGTAGTGTTTCAAAATTATTCCTAAAAGATA
TTTATGGTATAATTGGGAGTTTACTTGTTGATTGAAACCATTGC----------------------------TGGTATGA
TAGTACTATTCTAGCAACACATTGACTTTTTATGTTGGTATCTATTTGTCCATTCTCCAATTGCTATTCTGTTGTACTAT
TAAATCATATATGGGCTGGAGACTCCGGGGCAAATAAATCATATTTATTTAGTTCTTCTTTCTACGCTTAGGACTTTTGT
TTTCACTTTACGGTTTATGAAGTGGCTGAATGTGTGCTTTTGGCAAAATGAAGGAGCTCGCTGAGCCTACTATTAAAGAA
GCATTTGGAAAATGTGTCCAGCAAGGAGCATCCCGCATTATTGTCAGCCCATATTTCCTTTCACCTGGACGGCACTGGAA
ACAAGTAAGATTTTCAGTCATTTAACATTAGTAATGCAGAACGCTCAAGACTTGAGGCTATTTCAGTTTATTAAAATGTT
CAATGCAGAAGTAGGTAGTGGTTTCTATGCTATATCTTAATGCTTACTCCCTCCGTTCCAAATTACTCGTCGTTGAAATG
GATGTATCTAGAACTAAAATACATCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGGAGGGAGTACATGGCTAT
AGTATGACAATATTTCTCATTCAATTCTGCACTGTTTTTTTTTTTGCTCAGGATATTCCTTCTTTAGCAGCAGAAGCCTC
TAAAGAGCACTCTAACGTGGCCTACATTGTCACTGCTCCTCTTGGATTGCATGAGCTTATGGTGGTATGTGCTCATTAAT
TCCCCTATAGTCTATCACAATGTGCATTGTGCATTCAGTAGTCATTTTCTTATGAGAGCTAGTA----------------
-------------------------------------------------------------------GTTGGTAATCGAA
AAGTAAACTAGATGCCCGCTGAAAAGTTTGAAACTGCATTTTTAGACAA--TTATTCTTCCAGCCCTCCAGAAAAATCAT
GAAAAGGAATATGGACTAACCTTGATAAGTAGATCTACGAAAACATCCACCCTTTTGATGACTTTCTACATTTTTCTTTA
AGGGAATGTTGAACTTCTCTACTAAAAAGGCATAATAGATTTTCTTTTTCTGGACAATGAATCCAAGAGTTATTGAACAC
TACAGATTAATATTTCATTACCTTAGCATGCCATCATGTAACTGTGTTA--------------------------CACTC
TGGTGTGTGATTCTATACTGTATCAGTATGTCACGGTTGCTATAT-TTAGTAAGCGGCATGCTAGTATTTGAAACCAGAA
ATCTGAAATTATCGTGATAATCTGCTTTAATTCGGTAATATGGTATTTATAGATAGCAAACCAAAATATTTACTCCTTTG
GTGAGTTACTTCTGTATTTACATCTATCAAAGTGAATTTTGTGCAAACTATGATATCTACTGATCGAATATACCACCTAC
TCCACTGTTCATATTATCCAAGGCAATCTC----CTTTTTTTTGACAATCAAGAAGAGCAATCTCCTCTTAATAGAAGAG
GCGATGCCAGCAATGGTTGGCGAGTTGCTCCGATCATTCAGTATCATCTCAAAGTAGATTTGGTTACAAATTCCACGGCA
AACATGTTTCTGTAGGATATTATGAACGACCGCATCAAGTACTGCCTGAGGCACGTTGCAGGCGATGCTGATGAGTGTGC
AGTATGTGCTGGGACTGGAAAGTGCCACCTCTACTCCTGACGGTGATGACATGTGAGTTGCTCGAAAGTCTAATCAGGTC
ATCCTGTTTTTGGCTCATTGGCAGCACAGATTGATGGCTGAGGCCAATAATTCCATCTTGTTAACCCATGCTCCTTGTTA
TCTGCCATGTAATCAGAAAACATTGT---AACAATGATCTCGGCGGTTTTATTCAGCTTGTAGATTTAGAGTGTTTTCAG
TAGTCTGAACAAGATATCATGACAAGAGAGTGTAAATTTGTCATGCAAATCAAACACTGCTTGCTATGCACTACC-----
---------------GCAAGAAAAAAACTGTTACGAAAATGTCTGGAATGACGCTCCATCGCCATCCTCCGCCTCTTAGT
TGTTCTCTCTC---------------------------------------------------------------------
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>chr5A_1401
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-----------------------------------------------------------------CCATGGTGCTTATCT
TG---AGTAATTTCTAGAAAGTTACAGACAATTTTGTTACTATGTTCAGGGCAAAAGGACTGGCTACAGGATTG-TGAGC
CTGCTCACATGGTATGCTTATTGTTCTTGCATTTTTTGTGGAATTGCTTTTATGATTAGGGAGGGAGGTGCAGATTCTAA
ATTTATTAAACTCTGCTTGAAGCCTGCAGTGCAGCCCTTTGCCAATTTTATGACAGTAAACTGGCAATCAGTAAATCAAT
----------------------CATAAAACATTTCTGGATTTAATTTTCCCTTTGCTTGCCACTGAACCTGGCTACAGAT
TTCTAATGGAGTGCAGACTATTCTTTGAAACTACCTTGTACTGGCCAACTCACAAGACCGCTCTCCTGCAG--AAAAATA
AAAA-----TAACTTACATGGTCACTCATTTAGAATTCTCTATCTGACATGATTTTATTCAGTAGCTTCTTTCTATCTAC
CAATGAAAATCCCTATACACACCGCTGTACTTTCTTATTTTCTTCTGTTAGCAATGGGAGAATTTCCATGATCACTCATT
TGGATTTTCTGACATTCCGATCGTTTGAGTCCATACATATTTTGGTGGCAACATCCACATACGAACACTTTGAGTTTAGG
TTAACATCACATGGTATTCTAGTTGAGGATACTAAATATATTCAATGGTCTAAGTCGTCAGCTTATGTGTCTAAGATAAG
CATCTGCCACTGTTAATGTTTCTCATGTTGCTGTTTCTGATGCTTTGTAGTGACA--------TAAGTAAAAA-AAA---
---TCCAATGTAGTGATTTAGAAATATTTCTGAAGACATTGTTTTCACAAGTAGTATTTCAAAAT---------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------SS-----------------------S--S------S----------------------S------------
--------------------------------------------------------------------------------
----------------------------------------------------------SS--------------------
S---S-------------------S-----------------S---------------------------------S---
---S---------------------------------S---SS------S------S-S---------------------
--------S------S------------------------------S-------------S-------------------
--------------------------------------S---S-----------------------S-------------
------------S------------------------------------------S-----------------S------
---SSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------
-S-------------------------------------------------------------------SS-SSS-----
---------------------------------------------------------------------------S----
---------------------S----------------------------------------------------------
---------S-S-----------S--------------------------------------------------------
--------------------------S------S----------S-----------------------------------
-----------------------------S---------------------S----------------------------
---S-------------------S--------------------------------------------------------
--------S--------------------S--------------------------------------------------
---------------------------------------------S----------------------------------
---------------------------------------------------------------S----------------
--------------------S-----------------------S-----------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSSS-SS----SS-
----------------------------S-----S---------------------------------------------
S--------------S------------------------------------S-S-------------S-----------
-----------------------------S----S-------------------S-------------------------
--------------------S-----------------------------------------------------------
--------------------S----------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S---------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
----------------------------S---------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
-------------------SSS------------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
-----------S---S--------------S--------S----------------------------------------
---------------------------------------------------------------------S-----S----
------------------------S---------S-------------S---S---------------------------
-----------S-----------------S--------------------------------------------------
--------------------------------------------------------------S-S---------------
--------------------S-----------S--S--S-----------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------S---S-
----S---------------S----------S-------------------S--------------------S-------
--S---------S-----S----------S-----------------------S----------------S---------
-----------------------------------------S-----------S--------------------------
S-------------------------------------------------------------------------------
---------S---S------------SSS-----------S--------S------------------------------
S-------------S-----------------------------------------------------------------
----------S--------------------------------------------S-----------------SS-----
---------------------------------------------S-----------------SS---------S-----
---------------S-----SSSSSSSSSS---------------------------S---------------------
-------SSSS-SSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_745
--------------------------------------------------------------------------------
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-----TTCCGCCTATCAGATGCCAC-------------------------------------------------------
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>reverse_2884
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---CGCAGAAGTAGGTAGCGGTT---------------------------------------------------------
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>forward_1909
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-------------------------------------------------CTCACAAGACCGCTCTCCTG-----------
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>reverse_3372
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-----------GTGCTCGCTGAAAGTTGGGA-------------------------------------------------
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>forward_2747
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------GGAAAATGTGTCCAGCAAGGC-----------------------------------------------------
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>reverse_4893
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------------AGCGTCAATGTTTCGTTGGC------------------------------------------------
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--------------------------------------------------------------------------------
