>input_sequence_28744
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-------------------------------------------------------------------------ATGGCGG
CGGCGCGGGGACAAAAGGCGCTGGCGACGCTGGTGAGGTCGCTGCGGAGCGATTCCATCTCCAACTCCAATGCTCCCAGG
CTCAGGCACCTCCCGTCTCTCAGGTACGCATCGGCTTCCCCCCTTCTCTCCTTCGTAGGGGAT-------------GCTG
GTGGATGATGCGTGCTGATTTGATTTGACTGGGACGTGGATTTGGCTTGATCAGGAGGACCTTCTCGCTCTACGACCAGA
TCAACCTCATCGACAACGTCCCCGAAGACCAGCTCCGCTTCCAAACGTAACCTCTCTTTACATCCTCCCAGTTCCATTTC
AATTGTTTTCAGCTTTTGCTGTGCGATAGCAAGATTGCCTTCTTCAAAATATATCCGTAAATATGTAAAATTGTGGAATG
AGATTGACCATGGTTGTGTTTTAAGCTCAATGTTTGATGTATGCTCGAAGAATCATCCTGGTAGTGGTAGATTAATCAAT
GTACTCTCTTCCCAAAATAACAGGTTACAACATATCACTCAAATCGGTCAGTATCTGGAAGTTTAATTACTTACAAAATT
ATCTGAAGGGTCCTGTGGTTGATTAGTGCCCGGAAGTTTGGTTACAAACTGATGTTCTTCTCTTAAAACCAGATACTGCC
CACAGGAGAGTGCTGTAGCCTGTAGATACTCTTGTTCTACCTACTAATCCTAGTTGTTTGTAGGATTAAACCAGACGAAT
GCTTTAGATACATACGTTGATAATTCATATCACGAATTTCAATGACATTTTCTAGCAGATGGAGTGAGATTGAAGAGGTT
TTGATTAGAAGTGGTCATCTTCATATAGGATGGTTAACTCATATTATTGCTTGCAAGTAAAGGGATGCAGCTGCCATTTT
TCCCTTTTTTTCCCTTTAGTTGCTAGGAATCTGAAAATGATGCTGTACTCATGTACTGCTATGAATAATTTCTGAGGATT
GACAAGTAACTTCAACAAAAGTGAATCAATCCCCTTT-TTTGCTGAATGAAGGGGAACACAACATGTTTGAGCGACTTTT
TTTAGG--CTGCGAACTGTCATTTTTGCCTCTCAGATTATATTGGTTTTA------------------------------
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---------------------GGAAGACCACTAGCCTATTATTTAGAAAGCCAAAAGGAAATTAGCTAGGCGTAAAAGTG
GTTTCTTAGTTCTTATCCTGGCGGTGTTGGGGGCAGGTTGAATGATAAGGAAAACAAACAGAATTGCCGT-GGTAGCTGG
AAGCCGCTATGCATGAAAAACATCTAGTGGTTTGGGCATTCAAAACCTCAGAGTTATTTACATGTCTTGTT-TTGGGAAC
CATTATTTTAATCTTCTGATGCGTAAGGCTGTCACACGGTTGTTTTATTGTACCTGTTTTCCTTGTTAAACTGCATAGTA
TGACTTAGCCTTGTACTGATCTTGTT------------------------------------------------------
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-----------------------CTTAGATTCAATATAAAGCTGGGAGAGGTGCATCGGTTTCTCACTTTCTCTTATGAC
AATCACTTTGCTCTACTGTCATGAGGGGTGGATAGGACAACATATAGTGGATTTTTTTAACATTCCCCTTTAGTTTGCTA
ACTTTGGTT-CCTTCCCTGAGAATCATCATCTCAGTCTCGCTTATATACAATTGGCAAGAGTAACCAAAATTGTCAAAAA
TAGTGATTTGGGACACACTTGAATTT-GCCATGACTTGGGGCTTAGATTTCTCTTGTTATGCTTTCAGTTGTGAGTAG--
----------------------------------------------------------------TTCTGAAGAAAATGTC
ATTCTACTATCTCATTTAGTTCCGTGGAACTTGTGTATTTGATCAGATGACTGAAATAC--------TCTGCAGTTACGA
TGACACTGGATTCAAGATTAACAATGTAAAGTATGAAGGGAGCTTGCTGATAGTAGAAAACAAGATACTGACCTGGACAC
CCAAAACATTTGCGGATATAACTGCTGAAAGGTAAAGGCTTGCACAGTAATATACTATCTGCCGTATATATGTCTTGAGC
AATGACTCTATTAGGCCATGTGATACCATTTGTTTGCAGTAGCGCTGTTGAATCTATTCCTGTTTGTTTGTTATTTACTG
ACAACTTATATTCCTTCAATAATGCAGTTTATCAATCTTCAAAATTGTGCACCCAATCCCAGGTATCTTGGCCAGTACCC
TACAGTTCTACATGGCATTTTCTTATCATAATTTTATCGTGTCAGATGAGCATGGTTCCCAAGGGTGGCCATTTCATGTT
TAGTAAAAATGAACATTGTTTACGCGTTCAAGATATTGTGGTTTGTTTTTTT-ACTTCCGCGTTGTGGTTCAATATGTTG
CTCTAGTAGTTTATCCAAGTTCATTGTTAAAAATTAACAATATTTCCTCAGGG-CCCAGGGGTGGGCAGTTATGTTGTTC
GTATTTCTGAACCAAATTAGCGTTACTTGGTTATTAACATCCAATATACTGTGTTTCTCCAGAGATTCTGATTCTTGGTT
GCGGGAAATACGTCCAGCCAGTCAGTCCTGAGCTGCGCAAGTTCATTCGGTCAACTGGGATGAAACTGGAGGCCATCGAT
TCGGTAAC--------GCATTCCCCCCCTCCATGTAC-------------------------------------------
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-----------------AACATACCGTCTATGTCGAAAATCTCAATTCGAAACAC-AAACTTTGATACTGTGGTGCAAAC
TGTTGGCTCTGCAAGTGCATAATGGCCCATAGTTGTTTGGCAGAGGAATGCGGCTTCGACCTATAATATTCTGAACGAAG
AGGGGAGGGCAGTGGCGGCCGCAGTCCTTCCGTTCGGAGTCGACTCTTAA------------------------------
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>chr1B_1_TraesCS1B01G226600
GAGATTCTTAGGGAGTTTAGCCAAGTGGACCTGTGACAAAAAGGACCCTGTGTTAGCACAATGGCACAAAATATTTATTC
TGGACACAGACCCCATAGTCAAAATTATATTGAAACTCCTGAATTCAGTGAACTAGCATATTTTGTAATTGTAGGCTTGT
AACTTCGATATTTTTGGGGACAGAACATTGTCGCAATCAGGGTGACTTCCACTAGCATTCTGACTGGTTAAGCTCCACGA
GGTCTGGACAAGAATGAAAGCACACAAATAATCTAGAACTGTAATACCATGCTGCATCTGAACACTCCAGAGCAGTACTT
TTGCAACTTTCTCAATGCCAATCAAAGCTCTCAATACTTGATATAAATCATAAATGTCCATAAAATGTTCAATGCGGTAT
TGACCCAATATATTATACAGTAGATTATAAATTTATAAGATGCAACAGATTAACTAGCAAGCAATAATAATGGCGTGAAA
ATCTATTCAAAACCTAATTGCAAGGAGGAACTACCACATCTATCACAAGATTCACACCCTTGGGGGCACCTGAATAAACA
TTCTGCATGAATCAGCACCTACTTCCTGCCAAAATTCCCCAGATTTGACAAATTGAGCTCGCAGCCAGTT----------
--------------GAAACAGACAAGGACGAGAGGAAGAGAGGGGGAGGTGGACCTGGGCAGGGGAGGACTGCTCCATGA
GCTGGAGAAGGTTGGAGGTGGACTGCACCGCCTGCCCTATCTGCTCCGCCACCGTCGCCTTCGCTCCTCCGCCGCCGCCC
GCCACCGCAGCCATCTCCTGGTCGTCGTC---------GTCGCCGCCGCACACCGCAGCCTCGGAATAATTCGAGGCCCA
GCCCAGCCAACTGCAACATGGGCCACGTGGGCTGTCCATGTAAGGAGCCATTCGTAACTCGAAACATTTTCAGAGGTGGT
GGGTGCAAAACTCCCGACTCCCCTTGAACACGACGCGCCCCCACCGACCGGCGGCGAGGAAGAGGAGGAGGACATGGCGG
CGGCGCGGGGACAAAAGGCGCTGGCGACGCTGGTGAGGTCGCTGCGGAGCGATTCCATCTCCAACTCCAATGCTCCCAGG
CTCAGGCACCTCCCGTCTCTCAGGTACGCATCGGCTTCCCCCCTTCTCTCCTTCGTAGGGGAT-------------GCTG
GTGGATGATGCGTGCTGATTTGATTTGACTGGGACGTGGATTTGGCTTGATCAGGAGGACCTTCTCGCTCTACGACCAGA
TCAACCTCATCGACAACGTCCCCGAAGACCAGCTCCGCTTCCAAACGTAACCTCTCTTTACATCCTCCCAGTTCCATTTC
AATTGTTTTCAGCTTTTGCTGTGCGATAGCAAGATTGCCTTCTTCAAAATATATCCGTAAATATGTAAAATTGTGGAATG
AGATTGACCATGGTTGTGTTTTAAGCTCAATGTTTGATGTATGCTCGAAGAATCATCCTGGTAGTGGTAGATTAATCAAT
GTACTCTCTTCCCAAAATAACAGGTTACAACATATCACTCAAATCGGTCAGTATCTGGAAGTTTAATTACTTACAAAATT
ATCTGAAGGGTCCTGTGGTTGATTAGTGCCCGGAAGTTTGGTTACAAACTGATGTTCTTCTCTTAAAACCAGATACTGCC
CACAGGAGAGTGCTGTAGCCTGTAGATACTCTTGTTCTACCTACTAATCCTAGTTGTTTGTAGGATTAAACCAGACGAAT
GCTTTAGATACATACGTTGATAATTCATATCACGAATTTCAATGACATTTTCTAGCAGATGGAGTGAGATTGAAGAGGTT
TTGATTAGAAGTGGTCATCTTCATATAGGATGGTTAACTCATATTATTGCTTGCAAGTAAAGGGATGCAGCTGCCATTTT
TCCCTTTTTTTCCCTTTAGTTGCTAGGAATCTGAAAATGATGCTGTACTCATGTACTGCTATGAATAATTTCTGAGGATT
GACAAGTAACTTCAACAAAAGTGAATCAATCCCCTTT-TTTGCTGAATGAAGGGGAACACAACATGTTTGAGCGACTTTT
TTTAGG--CTGCGAACTGTCATTTTTGCCTCTCAGATTATATTGGTTTTA------------------------------
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---------------------GGAAGACCACTAGCCTATTATTTAGAAAGCCAAAAGGAAATTAGCTAGGCGTAAAAGTG
GTTTCTTAGTTCTTATCCTGGCGGTGTTGGGGGCAGGTTGAATGATAAGGAAAACAAACAGAATTGCCGT-GGTAGCTGG
AAGCCGCTATGCATGAAAAACATCTAGTGGTTTGGGCATTCAAAACCTCAGAGTTATTTACATGTCTTGTT-TTGGGAAC
CATTATTTTAATCTTCTGATGCGTAAGGCTGTCACACGGTTGTTTTATTGTACCTGTTTTCCTTGTTAAACTGCATAGTA
TGACTTAGCCTTGTACTGATCTTGTT------------------------------------------------------
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-----------------------CTTAGATTCAATATAAAGCTGGGAGAGGTGCATCGGTTTCTCACTTTCTCTTATGAC
AATCACTTTGCTCTACTGTCATGAGGGGTGGATAGGACAACATATAGTGGATTTTTTTAACATTCCCCTTTAGTTTGCTA
ACTTTGGTT-CCTTCCCTGAGAATCATCATCTCAGTCTCGCTTATATACAATTGGCAAGAGTAACCAAAATTGTCAAAAA
TAGTGATTTGGGACACACTTGAATTT-GCCATGACTTGGGGCTTAGATTTCTCTTGTTATGCTTTCAGTTGTGAGTAG--
----------------------------------------------------------------TTCTGAAGAAAATGTC
ATTCTACTATCTCATTTAGTTCCGTGGAACTTGTGTATTTGATCAGATGACTGAAATAC--------TCTGCAGTTACGA
TGACACTGGATTCAAGATTAACAATGTAAAGTATGAAGGGAGCTTGCTGATAGTAGAAAACAAGATACTGACCTGGACAC
CCAAAACATTTGCGGATATAACTGCTGAAAGGTAAAGGCTTGCACAGTAATATACTATCTGCCGTATATATGTCTTGAGC
AATGACTCTATTAGGCCATGTGATACCATTTGTTTGCAGTAGCGCTGTTGAATCTATTCCTGTTTGTTTGTTATTTACTG
ACAACTTATATTCCTTCAATAATGCAGTTTATCAATCTTCAAAATTGTGCACCCAATCCCAGGTATCTTGGCCAGTACCC
TACAGTTCTACATGGCATTTTCTTATCATAATTTTATCGTGTCAGATGAGCATGGTTCCCAAGGGTGGCCATTTCATGTT
TAGTAAAAATGAACATTGTTTACGCGTTCAAGATATTGTGGTTTGTTTTTTT-ACTTCCGCGTTGTGGTTCAATATGTTG
CTCTAGTAGTTTATCCAAGTTCATTGTTAAAAATTAACAATATTTCCTCAGGG-CCCAGGGGTGGGCAGTTATGTTGTTC
GTATTTCTGAACCAAATTAGCGTTACTTGGTTATTAACATCCAATATACTGTGTTTCTCCAGAGATTCTGATTCTTGGTT
GCGGGAAATACGTCCAGCCAGTCAGTCCTGAGCTGCGCAAGTTCATTCGGTCAACTGGGATGAAACTGGAGGCCATCGAT
TCGGTAAC--------GCATTCCCCCCCTCCATGTAC-------------------------------------------
--------------------------------------------------------------------------------
-----------------AACATACCGTCTATGTCGAAAATCTCAATTCGAAACAC-AAACTTTGATACTGTGGTGCAAAC
TGTTGGCTCTGCAAGTGCATAATGGCCCATAGTTGTTTGGCAGAGGAATGCGGCTTCGACCTATAATATTCTGAACGAAG
AGGGGAGGGCAGTGGCGGCCGCAGTCCTTCCGTTCGGAGTCGACTCTTAATCAC-GTCAGCAGACCGGTTTGCGTTCTCC
TTGAAGTCCATGGAGCTGACATGAGACCTCTCTTGTACCTCGGGGTCGAAACCTGTAACGATCGGTGGCAAGTGTTGTTC
CCCGCTCCTTTTTCTGTTGTCCCTTAGGAAGCATCACCCTGGTTGTGAAGTGTGTTCTCTTGTGACCGCGAAAACAAAAA
CAAAAGCAGTCTACCTTGTGTACATCAGAATAATCAGCACGAGCCGAACGGTGTTTTCCTTACTAGGCAGGGTTTATTTA
TTGGTCTTGTCGGCCCTGGGATTCATCTGCCATAAGGCCAAATCGATGAACCGACGAACAAACGGCGTGTGCACTGATGT
TTATACTTGTCCTGTAGTATCTCCCATAGCTATGGAAGGTTA-----ACACGATACAGT-AAATTGTGGTGGCGCAGAAT
GATATTGCGCTTGCAAATTACTGGGAGGAGAAAAATTGCCGTGCGTGTTCTCTAGGCGTGAGAGGCACCCTGCCGACTT-
GGGCAGGCAGTTCAGATCTCACGCCGAAACTCGGGGAGCCATACGCCTGGACTCGAGAGGTTGAGATATATCCTGCTTCC
CATTTTTGTTTGAACAAAAGTAGCGAGATATAGCTCGCTAGCTGCGCCACACACGGCAGTG---ATGGAGGCACGAAAGG
GAGATGGATCTTTGTCATCGTTTTCTCCGTCCACATCGCCTCAACGGGAACGTTTACTCGCATAGCCTAGCTCCGCACGC
AGGGCAGG-----CGCGACGAGCTCCAGCCAACTTGTCCTTGTTTTCTTTTGGAG--AAAATTCGTTCCAGCCAGTTTGT
TCTTGTCTGCATTGTCCGACACATTGCCGTCTCCGCGCGGCCCGCGAAGTCCCCAACTGCCCATCCCCCCAAACAGGATC
CGTCTCGCGTGGCATATTCCTCTCCGTGCACGCGGCCGTTCTGAGTGCACCGGCCAGTCGGCACACTCGTGTGTGATAGC
CGTGCGTTGACGGTATTATTGCGCTTGC
>chr1A_1
GAGATTCTTAGGGAGTTTAGCCAAGTGGACCTGTGACAAAAAGGACCCCGTGTTAGCACAATGATACAAAATATTTATTC
TGGACACAGACCCCATAGTCAAAATTATACTGAGACTCCTGAATTCAGTGAACTAGCATATTTTGTAATTGTAGGCTTGT
AACTTCGATATTTTGGGGGACAGAACATTATCGCAATCAGGGTGACTTCCACTAGCAATCTGATTGATTAAGCACCACGA
GGTCTGGACAAGAATGAAAGCACACAAATAATCTAGAACTGTAATACCATGCTGCATCTGAACACTCCAGAGCAGTATTT
TTGCAACTTTCTCAATGCCAATCAAAGCTCTCACTACTTG---------ATAAATGTGGACAAAATGTTCAATGCGGTCT
TGACACAAAATATTAGA---------------TTATAAGATGCAACAGATTAACTAGGAAGCAATCACAATGGCGTGAAA
ATTCATTCAAAACCTAACTGCAAGGAGGAACTACCACGTCTATCGCAAGATTCACACCCTTGGGGGCACCTGAATAAACA
GTCTGCACGAATCAGCACCTACTTCCTGTCGAAATTCCCCAGACTTGACAAATTGTTGCTCTTGTATCACATCCAAACGG
ATGCGAAACAGCAAGAAACAGACAAGGA-GAGAGGAAGAGAGGGGGAGGGAGACCTGGGCAGGGGAGGACTGCTCCATGA
GCTGGAGAAGGTTGGAGGTGGACTGCACCGCCTGCCCTATCTGCTCCGCCACCGTCGCCTTCGCTCCTCCGCCGCCCCCC
GCCGCCGCAGCCATCTCCTGGTCGTCGTCGTCGTCGCCGTCGCCGTCGCACAGCGCAGCCTCAGAATAATTCGAGGCCCA
GCCCAGTCAACTGCAACATGGGCCACGTGGGCTGTCCATGTAAGGAGCCATTCGCAATTCGAAACATTC-CAGAGGTGGT
GGGTCGAAAACTCCCGAACCCCCTAGAACAGGACACGCCCCCACCGACCGGCGGCGAGGAAGAGGAGGAGGACATGGCGG
CGGCGCGGGGGCAAAAGGCGCTGGCGACGCTGGTGAGGTCGCTGCGGAGCGATTCCATCTCCAACTCCAACGCTCCCAGG
CTCAGGCACCTCCCGTCTCTCAGGTACGCATCGGCTTCCCCC------TCCTTCGTAGGCGATGCTGGTGGATGACGCGT
GCTG------------GATTTGATTTGACCGGGATGTGGATTTGGCTTGATCAGGAGGACCTTCTCGCTCTACGACCAGA
TCAACCTCATCGACACCGTCCCCGAAGACCAGCTCCGCTTCCAAACGTAACCTCTCCTTACATCCTCCCCGTTCCATTTC
AATTGTTTTCAGCTTTTGCTGTGCGATAGCCAGATTGCCTTCTTCAAAATATATCCGTGGATATGTAGATTTGTGGAATG
AGATTGACCATGATTGCGTTTTAAGCTCAATGTTTGATGTATGGTCGAAGAATCATCCTGGTAGTGGTAGATTAATCAAT
GTACTCTCTTCCCAAAATAACAGGTTACAAAATATCACTCAAATCCGTCAGTATCTGGAGGTTTAATTACTTACAAAATT
ATCTGAAGGGTCCTGTGGTTGATCAGTGCCCGGAAGTTTGGTTACAAACTGATGTTCTTCTCTTAAAACCAGATACTGCC
CACAGGAGAGTGCTGTAGCCTGTAGATACTCTTGTTCTACCTACTAATCCTAGCTGTTTGTAGGATTAAACCAGACGAAT
GCTTTAGATACTTACGTTGATAATTCATATCACGAATTTCAATGACATTTTCTAGCAGATGGAGTGAGACTGAAGAGGTT
TTGATTAGAAGTGATCATCTTGATATAGGATGGTTAACTCATATTATTGCTTGCAAGTAAAGGGATGCAGCTGCCATTTT
TCCTTTTTTC-CCCTTTAGTTGCTAGGAATCTGAAAATGATGCTGTACTCACGTACTGCTATGAATAATTTCTGAGGATT
GACCAGTAACTTCAACAAAAGTGAATCAATCTCCTTT-TTTGCTGAATGAAGGGGAACACAACATGTTTGAGCGACTTTT
TTTAGG--CTGCGAACTGTCATTTTTGCCTCTCAAATTATTTTGGTTTTA------------------------------
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---------------------GGAAGACCACTAGCCTATTATTTAGAAAGCCAAAAAGAAATTAGCTAGGTGTAAAAGTG
GTTTCTTAGTTCTTATCCTGGGGGTGTTGGGGGCAGGTTGAATGATAAGGAAAACAAACAGAATTGCCGTTGGTAGCTGG
AAGCCGCTATGCATGAAAAACATCTAGTGGTTTGGGCATTCAAAACCTCAGAGTTATTTACATGTATTGTTTTTGGGAAC
CATTATTTTAAACTTCTGATGCGTAAGGCTGTCACACGGTTGTTTTATTGTACCTGTTTTCCTTGTTAAGTTGCATAGTA
TGACTTAGCCTTGTACTGATCTTGTTTTTTTTCGACCGAAGGGGCCACACGGCCCTCATATTCATTATGAAAATGGACTT
GTTTACAGGGCAACAAACCAACCATTACATCACTGATCTAGAACCACACCAGGATGCTCCAGCGTAGCAAGCCTAATCAT
CACACCGCTGATATATATCACCACATCAGGATGCTTCAATCTACCCAAAACTAGCCCAGAAAAGGCCTAGTGTCACACTA
CCTACAAAGGTATCAACAGAGTAAAGGACGACAACCAAATTAACATAAAGGCTTCGAGGCCAGCAAGCATTTCCAGCGGC
TAGCTTCACAAGATCCTTCTCACATGCGGCGCCAAACCATGCCCACCTCTGAAGACATCACGAGTCACCCTCACGATCCG
TCTAGACACCTGATGCAGCATGTTTTGTACCCCTCTTTTCTGCAGATTTTTCCAGGAGTCAATTAGGGAACAAACAAGAA
AGATAATGCCAGTAGGATCTGTAGGCATGGCACTTTGAAAACTGGATTTGTTCCTTGTTTTCCATATAGACCACAAGAGA
GCAGCAGTACCCAATAAAACAACTACCCTATCTTTGCCAGTATAGCTAGACAACCAGTTCTGGCACAGGTCGAAAAAAGA
CATTGGAGCTCTCTGGTTCCCTAGAGCACATCCCACAATATTCCACAGGAACTTAGCTAAGGAACAAGAGAAAAATAAAT
GATTCACAGGTACTGATCTTGTTCTTAGATTCAATATAAAGCTGGGAGAGGTGCATCTGTTTCTTACTTTCTCTTATGAG
AATCACTTTGCTCTACTGTCATGAGGGGTGGATAGTACAACACATAGTGGATTTTTTTAACATTCCCCTTTAGTTTGCTA
ACTTTGGTT-CCTTTCCTGAGAATCATCATCTCAGTCTCGCTTATATACAATTGGCAAGAGTAACCAAGATTGTCAAAAA
TAGTGATTGGGGACACACTTGAATTT-GCCATGACTTGGGGCTTAGATTTCTCTTGTTATGCTTTCAGTAGTGTGTAG--
----------------------------------------------------------------TTCTGAAGAAAATTTC
ATTCTACTATCTCATTTAGTTATGTCGAACTTGTGTATTTGATCAGATGACTGAAATAC--------TCTGCAGTTACGA
TGACACTGGATTCAAGATTAACAATGTAAAGTATGAAGGGAGCTTGCTGATAGTAGAAAACAAGATAATGACCTGGACAC
CCAAAACATTTGCGGATATAACTGCTGAAAGGTAAAGGTTTGCACAGTAATGTACTATCTGCTGTATATATGTCTTGAGC
AATGACTCTATTAGACCATGTGATACCATTTGTTTGCAGTAGCGCTGTTGAATATATTCCTGTTTGTTTGTTATGTACTG
ACAACTTATATTCCTTCAATAATGCAGTTTATCAATCTTCAAAATTGTGCACCCAATCCCAGGTATCTTGGCCAGTACCC
TACAGTTATACATGACATTTTCTTATCATAATTTTATCGTGTCAGATGAGCATGGTTCCCAAGGGTGGCCATTTCATGTT
TAGTAAAAATGAATATTGTTTACGCGTTCAAGATATTGCGGTCTGTTTTTTTTACTTCCGTGTTGTGGTTCAACATGTTG
CTCTAGTAGTTTATCCAAGTTCATTGTTAAAAATTAACAATATTTCCTCAGGG-CCCAGGGGTGGACAGTTCTGTTGTTT
GTATTTCTGAACCAAATTAGCGTTACTTGGTTATTAACATCCAATATACCGTGTTTCTCCAGAGATTCTGATTCTTGGTT
GCGGGAAATACGTCCAGCCAGTCAGTCCTGAGCTGCGCAAGTTCATTCGGTCAACTGGGATGAAACTGGAGGCCATCGAT
TCGGTAAAGTTCAAATGCATTTCCCCCCTCCAAGTAC-------------------------------------------
--------------------------------------------------------------------------------
-----------------AACATAGCGTCTATGCTGAAAATCTCAATTCGAAACAC-AAACTTCGATACTGTGATA-----
-----------------CATAACGGCCCATATTTGTTTGGCAGAGGAATGCGGCTTCGACCTATAATATTCTGAATGAAG
AGGGGAGGGCAGTGGCGGCCGCAGTTCTTCCGTTTGGAGTCGACTCTTAATCACTGTCAGCAGAGCGGTTTGTGTTCTCC
TTGAAGTCCATAGAGCTGACATGAGACCTCTCTTGCACCTCGGCGTCGAAACCTGTAACGATCGGTGGCAAGTGTTGTTC
CCCACTCCTTTTTCTGTTGTCCCTTAGGAAGCATCACCCTGGTTGTGAAGTGTGTTTTCTTGTGACCGCGAAAACAAAAA
CAAAAGCAGTCTACCTTGTGTACATCAGAATAATCTGCACGAGCCGAACGGTGTTTTCCGTATTAGCCAGGGTTTATTTA
TCGGTCTTGTCGGCCCTGGGATTCATCTGCCATGAGGCCAGATCGATGAACCGACGAACAAACGGCGTGTGCACTGATGT
TTGTACTTGTCCG---GTATCTCCCATAACTATGGAAGGTTCGATTCACACAATACAGT-AAATTGTGGTGGCGCAGAAC
GATTTTGCGCCGGTAAATCA---GAAGGAGAAAAATTGGCGTGCGTGTTCTC-AGGCGTGAGAGGCACGCTGCCGACTT-
GGGCAGGCAGTTGAGATCTCACGCCGAAACTCGGGGAGCCATACGCCAGGACTCGAGAGGCTGAGATATATCCTGCTTCC
TTTTTTTGTTTGAAC-AAAGTAGCGAGATATAGCTCGCTGGCTACGCCACACACGGTGGTGGTGATGGAGGCAGGAAAGG
GAGATGGATGTTTGTCATCGTTTTCTCCGTCCACATCGCCTCGACGGGAACGTTTACTCGCATAGCCTAGCTCCGCACGC
AGGGCAGGGCAGGCGCGACGAGCTCCGGCCAACTTGCCCTTGTTTTCTTTTGGAGGAAAAACTCGCTCCAGCCAGTTTGT
TCTTGTCTGCATCGTCCGACACATTGCCGTCTCCGCGCGGCCCGAGAAGTCCCCAACCGCCCATCCCCCCAAACAGGATC
CGCCTCGCGTGGCATATTCCTCTCCGCGCACGCGGCCGTTCTGATTGCACCGGCCAATGGGC------------------
----------------------------
>chr1D_1
GAGATTCTTAGGGAGTTTAGCCAAGTGGACCTGTGACAAAAAGGACCCTGTGTTAGCACAATGGCACAAAATATTTATTC
TGGACACAGACCCCATAGTCAAAATTATATTGAAACTCCTGAATTCAGTGAACTAGCATATTTTGTAATTGTAGGCTTGT
AACTTCGATATTTTTGGGGACAGAAAATTGTCGCAATCAGGGTGACTTCCACTAGCATTCTGACTGGTTAAGCTCCACAA
GGTCTGGACAAGAATGAAAGCACACAAATAATCTAGAACTGTAATACCATGCTGCATCTGAACACTCCATAGCAGTACTT
TTGCAACTTTCTCAATGCCAATCAAAGCTCTCAATACTTGATATAAATCATAAATGTCGATAAAATGTTCAATGCGGTAT
TGACCCAATATATTATACAGTAGATTATAAATTTATAAGATGCAACAGATTAACTAGCAAGCAATAATAATGGCGTGAAA
ATCTATTCAAAACCTAATTGCAAGGAGGAACTACCACATCTATCACAAGATTCACACCCTTGGGGGCACCTGAATAAACA
TTCTGCATGAATCAGCACCTACTTCCTGTCAAAATTCCCCAGATTTGACAAATTGAGCTCGCAGCCAGTT----------
--------------GAAACAGACAAGGACGAGAGGAAGAGAGGGGGAGGTGGACCTGGGCAGGGGAGGACTGCTCCATGA
GCTGGAGAAGGTTGGAGGTGGACTGTACCGCCTGCCCTATCTGCTCCGCCACCGTCGCCTTCGCTCCTCCGCCGCCGCCC
GCCGCCGCAGCCATCTCCTGGTCGTCGT---------CGTCGTCGTCGCACACCGCAGCCTCGGAATAATTCGAGGCCCA
GCCCAGCCAACTGCAACATGGGCCACGTGGGCTGTCCATGTAAGGAGCCATTCGTAACTCGAAACATTTTCAGAGGTGGT
GGGTGCAAAACTCCCGACCCCC-TAGAACACGACGCGCCCCCACCGACCGGCGGCGAGGAAGAGGAGGAGGACATGGCGG
CGGCGCGGGGGCAAAAGGCGCTGGCGACGCTGGTGAGGTCGCTGCGGAGCGATTCCATCTCCAACTCCAACGCTCCCAGG
CTCAGGCACCTCCCGTCTCTCAGGTACGCATCGGCTTCCCCCGTTCTCTCCTTCGTAGGGGAT-------------GCGT
GCTG------------GATTTGATTTGACCGGGACGTGGATTTGGCTTGATCAGGAGGACCTTCTCGCTCTACGACCAGA
TCAACCTCATCGACAACGTCCCCGAAGACCAGCTCCGCTTCCAAACGTAACCTCTCCTTACATCCTCCCAGTTCCATTTC
AATTGTTTTCAGCTTTTGCTGTGCGATAGCAAGATTGCCTTCTTCAAAATATATCCGTGAATGTGTAAATTTGTGGAATG
AGATTGACCATGGTTGCGTTTTAAGCTCAATGTTTGATGTATGGTCGAAGAATCATCCTGGTAGTGGTAGATTAATCAAT
GTACTCTCTTCCCAAAATAACAGGTTACAAAATATCACTCAAATCGGTCAGTATCTGGAGGTTTAATTGCAAAATT----
-TCTGAAGGGTCCTGTGGTTGATCAGTGCCCGGAAGTTCAGTTACAAACTGATGTTATTTTCTTAAAACCAGATACTACC
TACAGG----------AGAGTGTTGCTACTCTTATTCTACATACATAT--------------------------------
---------------GTTGATAATTCATATCACGAAATTCAGTGACATTTTCTGGCAGATGCAGTGAGACTGGAGAGGTT
TTGATTCGAAGTGATCATCTTGATATAGGATAGTTAACTCATTTTATTGCTTGCAAGTGAAGGGATAGAGCTGCCATTTT
TCCTTTTTTA-TCCTTTAC-TGCTAGGAATCTGAAGTTGATGCTGTACTCATGTACTGCTATGAATAATTTCTGAGAACT
GGTCACTAACTTCAGCATTACGGAATTGGTCACTTCTCTTGGCTGAATGAAGGGGAATGTAACATGTTTGAGCGATTCCT
TTTTTTTTCTGCAAACAGTCATCTTTGCCTCTCAAATTATTTTGGTGTTATAAGCTGTGGCGGAGCGTGAGCTAATTGCA
AGAGGAGGCCAACCCCAGGTCAAAACAAAAAATATGCGTGAAAAAACACGCAATAAGGGATGATTAGATGACCATTTCTT
CCATAGGACTGCATAATGTGTTGTTTTCAGTGCTACCTAAACCAGAAATTTATAATGCATCAAATTTTTTTATCAATTAG
TAGACGGAGTATGTGAGTAGAAACCTAAATTACCATAGCATATCAATTTTCAATGAAATAAAATGGAACATTGGCTATAT
ACCTAACCTAACCAAACACTAAGTCCGTAACCAAGTAACATAACGAACGCACCAGGACGCGTGGGTGTGCTAGCATCGCT
GCCTCAGTGACATGGGCATGCGGGCGCGACTCTAATCGATGGATGACGAGCAGCGGAGGAGAAGGGGATTGATGCCTAGG
GTTCCATGGCATCGGGCGCGCGGTGTCCCGTCGTCGGCGGTGTGGGCGTGCGGCTACCATATTTGGTCGGGGCGACGAGA
AGCCGAGTAAAAAGAGGATTTGAGGAGGAGTTCGCAATCAACCAAATTAGTCCATCATCACGCCACCTACACTAGACTGG
GGCCTGGAGGCAATGACGCTGGTGGCGGATGGCTCACGGACAAGCATCAGGCAGCCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCCCAGTTTGGCCTCCACGAC
CATGACCCTCCGCCAGTGGTTGGAATACCACTAGCCTATTACTGAGAAAGCGAAAAGGGAATTCGC--GGTGGAAAAGTG
GTTTCTTAATTCTTATCCTGGGGATGGTCAGGGTGGGTTGAATGATAAGGAAAACAAACAGAAATGCCATTGGTAGCTG-
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------------------------GGAGCTGATGAGAAAAAATATAGTGG--TTCTTTTACATTCTCCAGTAGTTCGCTA
ACTTTTGTTTCCTTTTCTGAGAATCATCCTGTCAGTCTAGCTTATATGCAATTTGGCAAGAGTCA---------------
-------TGGGGACACACTTGAATTTTGCCATGACTTGAGGCTTAGATTTCTCTT-TTATGCTTTCAGTTATGTGTGTTA
TTCTTTCTTTTAAGAAAAGGGCTTGCCCCCACCCCCATTTTATTAGAATGAATTGTGTGTATTATTCTGAAGAAAATTTC
ATTGT--TATCTCATTTAGTTCTGTAGAACTTGTATATTTGATCAGATTACTGAAATCCGTTCTGCTTCTGCAGTTACGA
TGACACTGGATTCAAGATTAACAATGTAAAGTATGAAGGGAGCTTGCTGATAGTAGAAAACAAGATAATGACCTGGACAC
CCAAAACATTTGCGGATATAACTGCTGAAAGGTAAATGTTTGCACAGTAATGTA------------TATATTTCTTGAGC
AATGACT--ATTAGATCATGGGATACCATTTGTTTGCAGTAGTGCTGTTGAATCTATTCCTGTTTGATTGTTATTTACTG
ACAACTTATATTCCTTCAATAATGCAGTTTATCAATCTTCAAAGTTGTGCACCCAATCCCAGGTATCTTAGCCAGTGCCC
TAT-GTTCTACATGGCATTTTCTTATGCTA---------------ATGAGCATGGTTCCCATGGGTGGGCATTCCATGTT
TAGTCAAAATGAATATTGTTTATGCGTGCATGATATTGCGGTCTA-TTTTTTTACTTCCATGTCGTGGCTCAACATGTTG
CTCTAGTAGTTTATCCAAGTTCATTGTTAAAAATTAACAATATGTCCTCAGGGACCCAGGGGTGGACAGTTCTGTTGTTC
GTATTTCTGAACCAAATTACCGTTAG--GGTTATTAACATGCAATATACCGTGTTTCTCCAGAGATTCTAATTCTTGGTT
GCGGGAAATACGTCCAGCCAGTCAGTCCTGAGCTGCGCAAGTTCATTCGGTCAACAGGGATGAAACTGGAGGCCATCGAT
TCGGTAAAGATCAAAGGCATTTTGCCCCTCATGTACTCCCTCCGTCCCAAAATGTACAAAGTCCGAGACACTTATTTTGG
GATGGAGGGAGTACAACATAATATCTACTCCCTCCGTTCTAAAATAAATGATCCAACTTTGTACTAACTTTAGTACAAAG
TTGGGTCACTATTTTGGAACGGAGGGAGTATGTTGAAAATCTCAATTCCAGACACAAAACTTCGATACTGTGATGCAAAC
TGTTAGCTCTGCATGTGCATAATGACCCATATTTGTTTGGCAGAGGAATGCGGCTTCGACCTATAATATTCTGAACGAAG
AGGGGAGGGCAGTGGCGGCCGCAGTTCTTCCGTTTGGGGTCGACTCTTGATCAC-------------GTTTGTGTTCTCC
TTGAAGTCAATAGAGCTGACATGAGACCTCTCTTGTACCGCGGCGTTGAAACCTGTAACGATCGGTGGCAAGTGTTGTTC
CCCACTCCTTTTTCTGTTATCCCTTAGGAAGCATCACCCTGGTTGTGAAGTGTGTTCTCTTGTGACCGCGAAAACAAAAA
CAAAAACAGTCTACCTTGCGTACATCAGAATAATCAGCA-GAGCCGAACGGTGTTTTCCGTATTAGCCAGGGTTTATTTA
TCGGTCTTGTCGGCCCTGGGATTCATCTGCCATGAGGCCAAATCGATGAACCGACAAACAAACGGCGTGCGCACTGATGT
TTATACTTGTCCTGTAGTATCTCCCATAGCTATGGAAGGTTC-----ACACGACACAGTAAATTTGTGGTGGCGCGGAAT
GATTTTGCGCCGGTAAATTA---GGAGGAGAAAAATCGCCGTGCGTGTTCTCCTGGCGCGAGAG--ACGCTGCCGACTTG
GGGCAGGCAGTTGAGATCTCACGCCGAAACTCGGAGGACCATACGCCTGGACTCGAGAGGCTGAGATATATCCTGCTTCC
CTTTTTTGTTTGAACAAA-GTAGGGAGATATAGCTCGCTGGCTACGCCACACACGGTGGTG---ATGGAGGCACGAAAGG
GAGATGGATCTTTGTCATCGTTTTCTCCGTCCACATCGCCTCGACTGGAACGTTTACTCGCATAGCCTAGCTCCGCACGC
AGGGCA-----GGCGCGACGAGCCCCGGCCAACTTGTCCTTGTTTTCTTTTGGTG--AAAACTCGCTCCAGTCAGTTTGT
TCTTGTCTGCATTGTCCGACACATTGCCGTCTCCGCGCGGCCCGCGAAGTCCCCAACCGCCCATCCCCCCAA-CAGGATC
CGCCTCGCGTGACATATTCCTCTCCGCGCACGCGGCCGTTCTGATTGCACCGGCCAGT----------------------
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>SNPs
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----------------------------------------------------------S---------------------
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----------------------------S---------------------------------------------------
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---S-----------------------------------------S----------------------------------
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------------------S-----S-------------------------------------------------------
----------S-----------------------------------------------------------S---------
------------------------------------------S-----------------------------------SS
-SS-SSSSSSSSSSSS-------------S--------------------------------------------------
--------------------------------------------------------S-----------------------
----------------------------------------------------------S----------S----------
----------------S--------------------------S------------------------------------
------------------------------S----------------------------S--------------------
-----------------------S--------------------------------------------------------
-----------------------------------------------------S--------------------------
-----------S---------------------------------------------------------S----------
-------------S-------S----------------------------------------------------------
---S-----SS---------------------------------------------------------------------
---S---------------------------S------------------------------------------------
----------------------------------S-----S---------------------------------------
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----------------------------------------------------------------------S---------
---------------------S----------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------S---------------------------------------------------------SS---------
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---------------------------------------------------------S------S--------------S
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--------------S-----------------------------------------------------S-----------
--------S----------------------------------------------------------------S------
-----------------------------------------------------------------------------S--
----------------------S--S------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------S------------S----------S-----------------
--------------S-----------------------------------------------------------------
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-------------S------------------------S---S-----------------S------------S------
-----------------------------------------------------------------S-----S--------
-------------------------------------------------S------------------------------
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-------S-------------S----------S-----------------------------------------------
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-----------------------S---------S----------------------------S---------S-------
----S--------S-----------------S------------------------------------------------
-------------------------S--------S-----------------------------S-------S-------
-----------S-------------------------------S------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------------------------------S--S---S-------------
-S-------------------------------S----------------------------------------------
-----------------------------------------S--------------------------------------
---S------SS-S------SSS-----------------------------S---------------S-----------
------------S-----------------------------------------------S-------------------
-S-------------------------------------S---S------------SS----------------------
------------------------------------------S-------------------------------------
--------------------------S----------------------------------S---S--------------
---------------------------------------------------------S----------------------
--S-----------------------S-----------------S-------------S---SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_985
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-----CAAAACTCCCGACTCCCCTT-------------------------------------------------------
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>reverse_4788
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-------------------------------------------------------------------CTGACCTGGACAC
CCAAAAC-------------------------------------------------------------------------
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>forward_1208
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--------------------------------------------------------------------TAGGGGATGCTG
GTGGATGA------------------------------------------------------------------------
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>reverse_4895
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--------------GCCATGTGATACCATTTGTTTGC-------------------------------------------
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>forward_1924
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----------------------------------------------------------------ATGCAGCTGCCATTTT
TCCC----------------------------------------------------------------------------
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>reverse_5673
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------------------------------------------------------------------------GTGCAAAC
TGTTGGCTCTGC--------------------------------------------------------------------
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>forward_5194
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------------------------------------------------------CTTCCGCGTTGTGGTTCAAT------
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>reverse_6723
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--TCTCGCGTGGCATATTCCTC----------------------------------------------------------
----------------------------
