>input_sequence_28672
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-----------------------------------------------------------------------ATGGAGTTC
GTGGCGTCCATCGTCGACACGGCGTTCCGGCCGCTCAAGGACTACTTCGCGCGGACGTTCGGGTACGTCATGTCCTGCGC
CGACTACATCGACGCGCTGGGCCAGGAGGTGGACGAGCTCAAGAGCAAGCGCGACGACGTCAAGCGCATGGTGGACGCCG
CCGAGCGCCAGGGGATGGAGGCCACCAGCCAGGTCAAGTGGTGGCTCGAGTGCGTCGCCAGGCTCGAGGACGCCGCCGCC
CGGATCCACGCCGAGTACCAGGCGCGCCTGCAGCTCCCGCCCGACCAGGCGCCCGGCCTCAGGGCCACCTACCGCCTCAG
CCAGAGGGCCGACGAGACGCTCGCCGAGGCCGCCGGCCTCAAGGACAAGGGCGACTTCCACAAGGTCGCCGACGAGCTCG
TGCAGGTCCGCTTCGAGGAGATGCCCAGCGCGCCCGTCGTCGGCATGGACGAGATGCTCCAGGAGCTCCACGCCTGTGTC
CGGGGCGGCGACGTCGGCGTCGTCGGCGTCTACGGCATGGGCGGGATCGGCAAGACCGCGCTGCTCCACAAGTTCAACAA
CGACTTCCTCATCGGCTCGCAGGACATCAATGTCGTCATCTACATCCAAGTTGGCAGGGAGTTCAGCCTCGACGACATCC
AGAAGGTCATCGGCGACCGGCTCGGGTTGAGCTGGGAGAACAGGACGCCCAAGGAGCGCGCTGGGGTGCTATACAGGGTG
CTCACCAAGATGAACTTTGTGTTGCTGCTGGACGACCTCTGGGAGCCACTCAACTTCCGGATGCTCGGCATTCCGGTTCC
CAAGCACAACTCCAAGAGCAAGATCATCGTGGCGACGAGGATGGAGGACGTGTGCAACCGAATGGATGTCCGTCGCAAGC
TCAAGATGGAGCGCCTGCCACCGATGGCTGCCTGGGAGCTCTTCTGTGACAAGGTCGGCGAGCACCTCGTGCGTGCCGCC
CCAGAGATCTGGCGCCCGGCAAGGGGAGTGGCCATGAAATGTGGTGGGCTGCCCCTCGCGCTCATCACCGTCGGCCGGGC
CATGGCAAGCAAACACACTGTAAAAGAATGGAAGCACGCCATCACTGTTCTAAATATTGCCCCATGGCAGCTTCTTGGCA
TGGAGTTGGACCTTCTTATGCCTCTCAAGAGCAGCTATGACAACTTGCCCAGTGACAAGCTAAGGCTCTGCCTGCTGTAT
TGCTCGCTGTTTCCAGAGGACTTCATCATTTCCAAGGATTGGGTCATAGGCTACTGCATCGGTGAAGGTTTCATAGATGA
TCTATACACTGAGATGGATGAGATATACAACAAAGGGCATGACCTTCTGGGTGATCTCGAGATTGCATCTTTGCTGGAAA
AAGGTAAAGACGACGAACACATCAGTATGCATCCCATGGTCCGCGCGATGGCTCTCTGGATAGCATCAGAATTCGGCACA
AAAGAGACCAAATGGCTTGTCCGTGCCTGGGTTGGGCTCAAGGAAGCACCAGGTGCAGAGAAATGGAACGAGGCCGAGCG
GATTTGTTTCATGCGGAATAACATCGTGGAGCTGTATGAGACGCCTAATTGCCCTCTGTTGAAGACCTTGATGCTACAAA
ACAACGCTGGGTTGAAAAAGTTGTGCGACGGCTTCTTCCAGTTCATGCCATCTCTCAGGGTATTAGATCTCTCGCACACC
TCTATCACTGAATTACCCTCAGGGATCAGTGCATTGGTTCAGTTGCAGTACCTTGATTTGTATCACACATACATCAAATC
ACTGCCAAGGGAGCTAGGATCACTGGTCAGTCTGCGGTTCCTGCTGCTCTCACATATGCCGCTTGTAATGATCCCAGGTG
GTGTCATAGATAGCCTCAAAATGCTGCAAGTTCTGTACATGGACTTCAGTTACGGAGACTGGAAAGTTGGTGAGAGTGGA
AATGGTGTTGATTTTCAGGAGCTTGAGAGCCTACGCAGGCTCAAGGCAATCGACATCACAGTACAGTCGGTCGAGGCCCT
AGAGAGACTGGCGCGGTCATATCGCCTCGCCGGTACAACAAGAAATCTGATGATAAAAGCATGCGGTGGCCTGACAAAGA
TAGAGCTCCCTTCAAGCCACCTCTGGAAGACCATGACAAACCTGAAGAGAGTGTGGATCGCAAACTGCAGCAATCTAGCG
GAGGTGATCATTGACGGCAGTGAAGAAACTGATTGCCCCATTTTAGATCCCTGTGATTTTATGAGGATGGGTGAAGTTAT
CGAGTGTGAACAGCCCGCCCTTGATAGCCTGCAGGGTATCATCCTGCAGAGCCTTCTGAAGGTAAAGATCGTCTACAGGG
GTGGGTGCGTCGAGAATCTGTCATCATTGTTCATCTGGTACTGCCTAGGACTGGAGGAGCTCATCACACTCAGCGATGGA
GATCAAGAAGCAGCGGCGAACGAAGACGAACAAGCTGCAGGGACTACTAGCAAAGTGATCACGCCCTTCCCTAAACTTAA
GGAACTGTATCTCCAAGGCCTACCAAATTTGAGGGCGCTGAGCAGTAGCGCATGCATGCTGCGGTTCCCGTCACTGAAGA
GACTCAAGATCGTCGATTGTCCAAGCCTCAAGAGGCTTAAACTTGTTGACGCGGAACTAAAGGTGATACAATGCGCGAGG
GACTGGTTCGATGGGTTGGAGTGGGATGATGATGAGGTCAAAGCATCTTACGAGCCACTGTTGGATGAAAGATA-TGAGT
GA------------------------------------------------------------------------------
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--
>chr3D_1_TraesCS3D01G319000
TAAAAAAAAATCACTCCATGATTGTAAGACGTGCATTGCACGTGTAAGCATGGTGTTATGGACAGGGGAAAAACAAAATT
GATACGGTACTAGGAGTATATAAAAGCTACTATTCATATTTTTTGGACTTGTGGTTTTTTATTGCCTTGGATACCAGGAC
AGTCATTCCCCCGTAAACTTACACGGGTATTATGCTAGGTCATGTTTGTTAAATAAGTTTCAGAAAGTTTTGAATCTTTA
TTTATTTTTTAATTGATTTTTCAACTCGGATGCATTGGCCGGCATGTTCCAAAGACCACAGTGTGCTACCGCTTC--GAG
ACACCTTCCGTTCCCTTGCAGACAGACACCTGTCATTGACCGTCTCGAACACATCGGAGATCAACGTTGAAAACTC----
------TGCACTGTCACTATGCACGCATCTTGACACCTTGTCTTGTTTGCACATTCAACTGCACAGACATGCTCGAGCTC
GACCGTGGTCACGTTTCTCCGTGGAACACACAGCCCGCCTGACGAAAGAAAA-GAAAAGAAAAAATAAACAGCCCGCCCG
ACGCCGTGGCGCAGTCAAGTCACCACCGCCGCCACCACACTCGCCACGCCAGTCGCCACCTTCCTCGCAGTCGCAGTGAG
CCGGTGATGGACTCCAACTGTGCGCAGTCCAAGTCTT----CGCCCCCGTCCATCTTCCTCCACCTCGCGGGTGTGCATT
TCTCCGTGTGTTCCTTCTTGGCTAAGGATACTCCTACTCTGAGCACCGCCCCCCCAGCTACCAATTTGTCCATTTCCCAT
GGCTTCACCCACAAGCTCCAACTGATTTCCCCTAGCACCAATTGCAGCTTGTCGGGTTCCTCCCTTCCGCCTCC------
-----GTGCATCTGCTTCAGTAATTAGCCCCCCATTCTGCTCCGTCGCCGCACAGATCCTCCAATTCGTGCCCAAATCA-
GGTTC--TTGGCCGACCAAATCCAGGCCTCGCTCGGCGTAGAGTGAGGCATTCGGCTCGCGGCGGGCGGCGATGGAGTTC
GTGGCGTCCATCGTCGACACGGCGTTCCGGCCGCTCAAGGACTACTTCGCGCGGACGTTCGGGTACGTCATGTCCTGCGC
CGACTACATCGACGCGCTGGGCCAGGAGGTGGACGAGCTCAAGAGCAAGCGCGACGACGTCAAGCGCATGGTGGACGCCG
CCGAGCGCCAGGGGATGGAGGCCACCAGCCAGGTCAAGTGGTGGCTCGAGTGCGTCGCCAGGCTCGAGGACGCCGCCGCC
CGGATCCACGCCGAGTACCAGGCGCGCCTGCAGCTCCCGCCCGACCAGGCGCCCGGCCTCAGGGCCACCTACCGCCTCAG
CCAGAGGGCCGACGAGACGCTCGCCGAGGCCGCCGGCCTCAAGGACAAGGGCGACTTCCACAAGGTCGCCGACGAGCTCG
TGCAGGTCCGCTTCGAGGAGATGCCCAGCGCGCCCGTCGTCGGCATGGACGAGATGCTCCAGGAGCTCCACGCCTGTGTC
CGGGGCGGCGACGTCGGCGTCGTCGGCGTCTACGGCATGGGCGGGATCGGCAAGACCGCGCTGCTCCACAAGTTCAACAA
CGACTTCCTCATCGGCTCGCAGGACATCAATGTCGTCATCTACATCCAAGTTGGCAGGGAGTTCAGCCTCGACGACATCC
AGAAGGTCATCGGCGACCGGCTCGGGTTGAGCTGGGAGAACAGGACGCCCAAGGAGCGCGCTGGGGTGCTATACAGGGTG
CTCACCAAGATGAACTTTGTGTTGCTGCTGGACGACCTCTGGGAGCCACTCAACTTCCGGATGCTCGGCATTCCGGTTCC
CAAGCACAACTCCAAGAGCAAGATCATCGTGGCGACGAGGATGGAGGACGTGTGCAACCGAATGGATGTCCGTCGCAAGC
TCAAGATGGAGCGCCTGCCACCGATGGCTGCCTGGGAGCTCTTCTGTGACAAGGTCGGCGAGCACCTCGTGCGTGCCGCC
CCAGAGATCTGGCGCCCGGCAAGGGGAGTGGCCATGAAATGTGGTGGGCTGCCCCTCGCGCTCATCACCGTCGGCCGGGC
CATGGCAAGCAAACACACTGTAAAAGAATGGAAGCACGCCATCACTGTTCTAAATATTGCCCCATGGCAGCTTCTTGGCA
TGGAGTTGGACCTTCTTATGCCTCTCAAGAGCAGCTATGACAACTTGCCCAGTGACAAGCTAAGGCTCTGCCTGCTGTAT
TGCTCGCTGTTTCCAGAGGACTTCATCATTTCCAAGGATTGGGTCATAGGCTACTGCATCGGTGAAGGTTTCATAGATGA
TCTATACACTGAGATGGATGAGATATACAACAAAGGGCATGACCTTCTGGGTGATCTCGAGATTGCATCTTTGCTGGAAA
AAGGTAAAGACGACGAACACATCAGTATGCATCCCATGGTCCGCGCGATGGCTCTCTGGATAGCATCAGAATTCGGCACA
AAAGAGACCAAATGGCTTGTCCGTGCCTGGGTTGGGCTCAAGGAAGCACCAGGTGCAGAGAAATGGAACGAGGCCGAGCG
GATTTGTTTCATGCGGAATAACATCGTGGAGCTGTATGAGACGCCTAATTGCCCTCTGTTGAAGACCTTGATGCTACAAA
ACAACGCTGGGTTGAAAAAGTTGTGCGACGGCTTCTTCCAGTTCATGCCATCTCTCAGGGTATTAGATCTCTCGCACACC
TCTATCACTGAATTACCCTCAGGGATCAGTGCATTGGTTCAGTTGCAGTACCTTGATTTGTATCACACATACATCAAATC
ACTGCCAAGGGAGCTAGGATCACTGGTCAGTCTGCGGTTCCTGCTGCTCTCACATATGCCGCTTGTAATGATCCCAGGTG
GTGTCATAGATAGCCTCAAAATGCTGCAAGTTCTGTACATGGACTTCAGTTACGGAGACTGGAAAGTTGGTGAGAGTGGA
AATGGTGTTGATTTTCAGGAGCTTGAGAGCCTACGCAGGCTCAAGGCAATCGACATCACAGTACAGTCGGTCGAGGCCCT
AGAGAGACTGGCGCGGTCATATCGCCTCGCCGGTACAACAAGAAATCTGATGATAAAAGCATGCGGTGGCCTGACAAAGA
TAGAGCTCCCTTCAAGCCACCTCTGGAAGACCATGACAAACCTGAAGAGAGTGTGGATCGCAAACTGCAGCAATCTAGCG
GAGGTGATCATTGACGGCAGTGAAGAAACTGATTGCCCCATTTTAGATCCCTGTGATTTTATGAGGATGGGTGAAGTTAT
CGAGTGTGAACAGCCCGCCCTTGATAGCCTGCAGGGTATCATCCTGCAGAGCCTTCTGAAGGTAAAGATCGTCTACAGGG
GTGGGTGCGTCGAGAATCTGTCATCATTGTTCATCTGGTACTGCCTAGGACTGGAGGAGCTCATCACACTCAGCGATGGA
GATCAAGAAGCAGCGGCGAACGAAGACGAACAAGCTGCAGGGACTACTAGCAAAGTGATCACGCCCTTCCCTAAACTTAA
GGAACTGTATCTCCAAGGCCTACCAAATTTGAGGGCGCTGAGCAGTAGCGCATGCATGCTGCGGTTCCCGTCACTGAAGA
GACTCAAGATCGTCGATTGTCCAAGCCTCAAGAGGCTTAAACTTGTTGACGCGGAACTAAAGGTGATACAATGCGCGAGG
GACTGGTTCGATGGGTTGGAGTGGGATGATGATGAGGTCAAAGCATCTTACGAGCCACTGTTGGATGAAAGATA-TGAGT
GAATTCAGTTTTTGTGCATTATGTTGGCCCAAAATTTCAGAGATACATTTCCCCTCGCTTATGCCGGGCTTTTGCGTCTG
GCATTCGACGGGCCTTTCTTGGCATTTCGAAGAAAATAAAAACAG-GTTTACTCCACCCC-----TTTTTATACTTTTCA
AAAAAGATGCTTGGTG----TTGATCAATCACTGAATTCAGGGATTGATATGCCCTTCAGATGTGTCATCA---------
-------------------------------------------------------------TTCTTCTGAGAGATTATAC
TTTTGTTTTTGTGTGGACTGGAC-TATGCACATCTGATGAATGGATCGTAGCAGTGATCGGCAGGTGTTGGTATGAATAT
ATTGCCGGTACCAACC-AGTGCTGATCC-------AAATCTCTATGCAG----TACGGCTGATGGCTGATGCAGCTAACA
TATCCCTGCGTGC-----------------TCTGCTGCAAATTGCAATCGACAATCCCTAAAAAAAAC------------
--------------------------------------------------------------------------------
-----------TAACTGTGATTGATGTATCCTTATCACAGATTTTAGACTTGGCTAAAGATGAAAAGAAAACCTAGTAGT
TGCAATCTGTGATGA-----CGGGCGCCGATGTA---CGTACCTCGAGCTGCTGCAATCTCATCT----AGAATTCCTGA
TTCTAGCGTTGCTGTAAACAGCGAATCTG---GACTTCACGCATTGGGAATAAATAGGG----ATTTGGGAGGTGGCGAC
CGGGGC---------AGTCGGCGGCCTTCAGGAACGGGGAGGACTGGGGTTACCGCCTACC-------------------
-----------TCCAACTGGACGCAGCTCCCCTGGGCCCACACGTCAGTGACCAAAGTCAGGTCTGACGCGGGGATCCAA
CTAGGCACTGGGCCGCTCCAAGGTTGTGCGCATAGTTAAAAAAAAAAGAGGGATTG---GAATTATACTATGGGCTTTTG
AAATA---AACCTTGTCTCAGATCTAATTGATCGACCCCTCAAAAAAAATTCTAATTGATCGAATTGATTAGCCTCAGTC
ACCTAAAAA---AAAGTTGATTAGCCTAAAAAAAATTGATCGAATTGATGTAAATTAAGCAAACCAGAACCACATGGCGT
AT
>chr3B_291
AAAACC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CAGTGTGCTACCGCTTC--GAG
ACACCTTCCGTTCCCTTGCAGACAGACAGCTGTCATTGACTGGCTCGAAGACATCGGAGATCAACGTTGAAAAGTC----
------TGCACTGTCACTATGCACGCATAT-------TTGTCTTGTTTGGACATTCAACCGTACGGACGT------GCTC
GACCGCGGTCACGTTTCTCCGTGGAACAAACAGCCCGCCTGACGAAAGAAAA-GAAAAAAAAA-----------CGCCCG
ACGCCATGGCGCAGTCAAGTCACCACCACCACCA---CACTCGCCACGCCCGTCGCCACCTTCCTCGCGGTCGCAGTGAG
CCGGTGATGGACTCCAACTGTGCGCAGTCCAAGTCTTCGCGCGCCCCCGTCCATCTTCCTCCGCATCGCGA---------
-----GTGTGTTCCTTCTTGGCTAAGGATACTCCTACTCTGAGCTCCAA-CCCCCAGCTACCAATTTGTCCATTTCCCAT
GGCCTCACCCACAAGCTCCAACTGATTTCCCCCAGCACCAATTGCAGCTTGTCGGGTTCCTCCCTTCCGCG-CCGCGCGT
CC------------CTTCAGTAATTAGCCCCCCATTCGGCTCCGTCGCCGCACAGATCCTCCAATTCGTGCCCAAATCA-
GGTTTCTTTGGCAGACCGAATCCAGGCCTCGCTCGGTGAAGCCTGAGGCATTCGGCTCGCGGCGGGCGGCGATGGAGTTC
GTGGCGTCCATCGTGGACACGGCGTTCCGGCCGCTCAAGGACTACTTCGCGCGGACGTTCGGGTACGTCATGTCCTGCGC
CGACTACATCGACGCGCTGGGCCACGAGGTGGACGAGCTCAAGAGCAAGCGCGACGACGTCAAGCGCATGGTGGAAGCCG
CCGAGCGCCAGGGGATGGAGGCCACCAGCCAGGTCAAGTGGTGGCTCGAGTGCGTCGCCAGGCTCGAGGACGCCGCCGCC
CGGATCCACGCCGACTACCAGGCGCGCCTGCAGCTCCCGCCCGACCAGGCGCCCGGCCTCAGGGCCACCTACCGCCTCAG
CCAGAGGGCCGACGAGACGCTCGCCGAGGCCGCCGGCCTCAAGGACAAGGGCGACTTCCACAAGGTCGCCGACGAGCTCG
TGCAGGTCCGCTTCGAGGAGATGCCCAGCGCGCCCGTCGTTGGCATGGACGAGATGCTCCAGGAGCTCAACGCCTGCGTC
CGGGGCGGCGACGTTGGCGTCGTCGGCGTCTACGGCATGGGCGGGATCGGCAAGACCGCGCTGCTCCACAAGTTCAACAA
CGACTTCCTCATCGGCTCGCAGGACATCAATGTCGTCATCTACATCGAAGTTGGCAGGGAGTTCAGCCTCGACGACATCC
AGAAGGTCATCGGCGACCGGCTCGGGTTGAGCTGGGAGAACAGGACGCCCAAGGAGCGCGCTGGGGTGCTCTACAGGGTG
CTCACCAAGATGAACTTTGTGTTGCTGCTGGACGACCTCTGGGAGCCACTCAACTTCTGGATGCTCGGCATTCCAGTTCC
CAAGCACAACTCCAAGAGCAAGATCATCGTGGCGACGAGGATGGAGGACGTGTGCAACCGAATGGATGTCCGTCGCAAGC
TCAAGATGGAGCGCCTGTCACCGATGGCCGCCTGGGAGCTCTTCTGTGACAAGGTCGGCGAGCACCTCGTGCGTGCCGCC
CCAGAGATCTGGCGCCCGGCAAGGGGAGTGGCCATGAAATGTGGTGGGCTGCCCCTCGCGCTCATCACCGTCGGCCGGGC
CATGGCAAGCAAGCACACTGCAAAAGAATGGAAGCACGCCATCACTGTTCTAAATATTGCCCCATGGCAGCTTCTTGGCA
TGGAGATGGACCTTCTTATGCCTCTCAAGAGCAGCTATGACAACTTGCCCAGTGACAAGCTAAGGCTCTGCCTGCTGTAT
TGCTCGCTGTTTCCAGAGGACTTCATCATTTCCAAGGATTGGGTCATAGGCTACTGCATCGGTGAAGGTTTCATAGATGA
TCTATACACTGAGATGGATGAGATATACAACAAAGGGCATGACCTTCTGGGTGATCTCGAGATTGCATCTTTGCTGGAAA
AAGGTAAAGACGACGAACACATCAGTATGCATCCCATGGTCCGCGCGATGGCTCTCTGGATAGCATCAGAATTCGGCACA
AAAGAGACCAAATGGCTTGTCCGTGCCTGGGTTGGGCTCAAGGAAGCACCAGGTGCAGAGAAATGGAGCGAGGCCGAGCG
GATTTGTTTCATGCGGAATAACATCGAGGACCTGTATGAGGCGCCTAATTGCCCTCTGTTGAAGACCTTGATGCTACAAA
ACAATGCTGGGTTGAAAAAGATATGCGACGGCTTCTTCCAGTTCATGCCATCTCTCAGGGTATTAGATCTCTCGCACACC
TCTATCACTGAATTACCCTCAGGGATCAGTGCATTGGTTCAGTTGCAGTACCTTGATTTGTATCACACAGACATCAAATC
ACTGCCAAGGGAGCTAGGATCACTGGTCACTCTGCGGTTCCTGCTCCTCTCACATATGCCGCTTGTAATGATCCCAGGTG
GTGTCATAGATAGCCTCAAAATGCTGCAAGTTCTGTACATGGACTTCAGTTACGGAGACTGGAAAGTCGGTGAGAGTGGA
AATGGTGTTGATTTTCAGGAGCTTGAGAGCCTACGCAGGCTCAAGGCAATCGACATCACAGTACAGTCGGTCGAGGCCCT
AGAGAGACTGGCGCGGTCATATCGCCTCGCCGGTACAACAAGAAATCTGATGATAAAAGCATGCAGTAGCCTGACAAAGA
TAGAGCTCCCTACAAGCCACCTCTGGAAGACCATGACAAACCTGAAGAGAGTGTGGATCGCAAGCTGCAGCAATCTAGCG
GAGGTGATCATTGACGGCAGCGAAGAAACTGATTGCTCCATTTTACATCCCATTGATTTTATGAGGATGGGTGAAGTTAT
TGAGTGTGAACAGCCCGCCCTTGATAACCTGCAGGGTATCATCCTGCAGAGCCTTATGAAGGTAAAGATCATCTACAGGG
GTGGGTGCGTCGAGAATCTGTCGTCATTGTTCATCTGGTACTGCCAAGGACTGGAGGAGCTGATCACACTCAGTGATGGA
GATCAAGAAGCAGCGGAGAACGAAGACGAACAAGCTGCAGGGACTT---GCAAAGTGATCACGCCCTTCCCTAAACTTAA
GGAACTGTATCTCCAAGGCCTACCAAAGTTAAGGGCGCTGAGCAGTAGCGCATGCATGCTGCGATTCCCATCACTGAAGA
GACTCAAGATCGTCGATTGTCTAAGCCTCAAGAGGCTTAAACTCGTTGCCGCGGAACTAAAGGTGATACAATGCGCGAGG
GACTGGTTCGATGGGTTGGAGTGGGATGATGATGAGGTGAAAGCATCTTACGAGCCACTGTTGGATGAAAGATA-TGATT
GAATTCAGTTTTTGTGCATTATGTTGGCCCAAAATTTCAGAGATACATTTTCCATCGCTTATGCCGGGC-TTTGCGTCTG
GCATTCGACGGGCCTATCTCTGCGTTTCAAAGAAAATAAAAACAGTGTTTACTCCACCCC-----TTTTTAAATTTTTCA
AAAAAGATGCTTGGTG----TTGATCAGTCACTGAATTCAGGGATTGATATGCCCTTCAGATGTGTCATCG---------
-------------------------------------------------------------TTCTTCTGAGAGATTATGC
TTTTGTTTTTGTGTGGACTGGAC-AATGCACATTTGATGAATGGACCGTATGAATGTC----------------------
--TGCCGGTACCAACCGAGTGTTGATCCAAATCTGAAATCTGTATGCAG----CACGGCTGATGGCTGATGCAGCTAATC
CATTCCTTCTTTCCCTGCGTGCTCTGCCTGTCTGCTGCAAATTGCAATCGGCAATCCCTAAAAAA--C------------
--------------------------------------------------------------------------------
-----------TAACGGTGATAGATGTATCCTCATCACAGATTTTAGACTTGGCTAAAGATGAAAGGAAAACCTAGT---
TGCAAGCTGTGATAA-----CAGGCGCCGATGTA---CGTACCTCGAGTTGCTGGG-----ATCT----AGAGTTCCTGA
TCCCAGCGTTGCTGCCAACAGCGAATCTGTAGGACTTCACGCTTTGGGACTAGGGATTTGGCCATCTGGGAGGTGGCGAC
CGGGGCGACCCTGCGAGTCGGCGGCGTTCAGGAACGGGGAGGACTGAGGGTAGCGCCTACC-------------------
-----------GCCAACTGGACGCACTTCCTCTGGGCCCACACGTCAGTGACCAAAGTCAGGTCTGACGCGGGGATCCAA
CTGGGCACTGGGCCGGTCCAAGGTTGTGCGCATAGTTAAAAAA-AAAAAGAGGGAGTAAAAATTATACTATGGGCTTTTG
AAATACTAAACCATGTCTCAGATCTAATTGATCGA---------------------------------------------
--------------------------------------------------------------------------------
--
>chr3A_291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAAAACCACAGTGTGCTACCGCTTCGAGAG
ACACCTTCCGTGCCCTTGCAGACAGACACCTGTCGTTGACTGTCTCGAAGACATCGGAGATCAACGTTGAAAAGTAGTAC
GTAGTATGCACTGTCACTATGCACGCATAT-------TTGTCTTGTTTGCACGTTCAACCGTACTGACATGCTCGGCCGT
GGTCA-------GTTTCTCCGTGGAACAAACAGCCCGCCTGACGAAAGAAAAAGAAAAGAAAGAA-AAACAACCCGCCCG
ACGCAATGGCCCAGTCAAGTCACCACCACCACCA---CACTCGCCACGCCAGTCGCCACCTTCCTCGCGGTCGCAGTGAG
CCGGTGATGGACTCCAACTGTGCGCAGTCCAAGTCTT----CGCCCCCGTCCATCTTCCTCCGCATCGCGGGTGCGCATT
TCTCCGTGTGTTCCTTCTTGGCTAAGGATACTCCTGCTCTGAGCTCCAA-CCCCCAGCTACCAATTTGTCCATAT-----
-------CCCACAAGCTCCAACTGATTTCCCCCAGCACCAATTGCAGCTTGTCGCGTTCCTCCCTTCCGCCTCCGCGCGT
CCCGTGTGCATCCGCTTCAGTAATTAGCCCCCCATTCGGCTCCGTCGCCGCACAGATCCTTCAATCCGTGCCCAAATCAG
GGTTC--TTGGCCGACCGAATCCAGGCCTCGCTCGGCGGAGACTGAGGCATTCGGCTCGCGGCGGGCGGCGATGGAGTTC
GTGGCGTCCATCGTCGACACGGCGTTCCGGCCGCTCAAGGACTACTTCGCGCGGACGTTCGGGTACGTCATGTCCTGCGC
CGACTACATCGACGCGCTGGGCCACGAGGTGGACGAGCTCAAGAGCAAGCGCGACGACGTCAAGCGCATGGTGGACGCCG
CCGAGCGCCAGGGGATGGAGGCCACCAGCCAGGTCAAGTGGTGGCTCGAGTGCGTCGCCAGGCTCGAGGACGCCGCCGCC
CGGATCCACGCCGAGCACCAGGCGCGCCTCCAGCTCCCGCCCGACCAGGCGCCCGGCCTCAGGGCCACCTACCGCCTCAG
CCAGAGGGCCGACGAGACGCTCGCCGAGGCCGCCGGCCTCAAGGACAAGGGCGACTTTCACAAGGTCGCCGACGAGCTCG
TGCAGGTCCGCTTCGAGGAGATGCCCAGCGCGCCCGTCGTCGGCATGGACGAGATGCTCCAGGAGCTCAACGCCTGCATC
CGGGGCGGCGACGCCGGCGTCGTCGGCGTCTACGGCATGGGCGGGATCGGCAAGACCGCGCTGCTCCACAAGTTCAACAA
CGACTTCCTCATCGGCTCGCAGGACATCAATGTCGTCATCTACGTCGAAGTTGGCAGGGAGTTCAGCCTCGACGGCATCC
AGAAGGTCATCGGCGACCGGCTCGGGTTGAGCTGGGAGAACAGGACGCCCAAGGAGCGCGCTGGGGTGCTCTACAGGGTG
CTCACCAAGATGAATTTTGTGTTGCTGCTGGACGACCTCTGGGAGCCACTCAACTTCCGGATGCTCGGTATTCCGGTTCC
CAAGCACAACTCCAAGAGCAAGATCATCGTGGCCACGAGGATGGAGGACGTGTGCAACCGAATGGATGTCCGTCGCAAGC
TCAAGATGGAGCGCCTGCCACCGATGGCCGCCTGGGAGCTCTTCCGTGACAAGGTCGGCGAGCACCTCGAGCGTGCCAGC
CCAGAGATCTGGGGGCCGGCAATGGGAGTGGCCATGAAATGTGGTGGGCTGCCCCTTGCGCTCATCACCGTCGGCCGGGC
TATGGCCAGCAAGCACACTGCAAAAGAATGGAAGCACGCCATCACCGTTCTAAATATTGCCCCATGGCAGCTTCTTGGCA
TGGAGACGGACGTTCTTATGCCTCTCAAGAGCAGCTATGACAACTTGCCCAGTGACAAGCTAAGGCTCTGCCTGCTGTAC
TGCTCGCTGTTTCCAGAGGACTTCATCATTTCCAAGGATTGGGTCATAGGCTACTGCATCGGTGAAGGTTTCATAGATGA
TCTATACACTGAGATGGATGAGATATACAACAAAGGGCATGACCTTCTGGGTGATCTCAAGATTGCATCCTTGCTGGAAA
AAGGTAAAGACGACGAACACATCAGTATGCATCCCATGGTCCGCGCGATGGCTCTCTGGATAGCATCAGAATTCGGCACA
AAAGAGACCAAATGGCTTGTCCGTGCCTGGGTTGGGCTCAAGGAAGCACCAGGTGCAGAGAAATGGAGCGAGGCTGAGCG
GATTTGTTTCATGCGGAATAACATCGTGGAGCTGTATGAGACGCCTAATTGCCCTCTGTTGAAGACCTTGATGCTACAAA
ACAACGCTGGGTTGAAAAAGTTGTGCGACGGCTTCTTCCAGTTCATGCCATCTCTCAGGGTATTAGATCTCTCGCACACC
TCTATCACTGAATTACCCTCAGGGATCAGTGCATTGGTTCAGTTGCAGTACCTTGATTTGTATCACACAGACATCATATC
ACTGCCAAGGGAGCTAGGATCACTGGTCACTCTGCGGTTCCTGCTCCTCTCACATATGCCGCTTGTAATGATCCCAGGTG
GTGTCATAGATAGCCTCAAAATGCTGCAAGTTCTGTACATGGACTTCAGTTACCGAGACTGGAAAGTCGGTGAGAGTGGA
AATGGTGTTGATTTTCAGGAGCTTGAGAGCCTACGCAGGCTCAAGGCAATCGACATCACAGTACAGTCGGTCGAGGCCCT
AGAGAGGCTGGCACGGTCATATCGCCTCGCCGGTACAACAAGAAATCTGATGATAAAAGCATGCGGTAGCCTGACAAAGA
TGGAGCTCCCTTCAAGCCACCTCTGGAAGACCATGACAAACCTGAAGAGAGTGTGGATCTCAAACTGCAGCAATCTAGCT
GAGGTGATCATTGACGGCAGCGAAGAAACTGATTGCCCCATTTTAGATCCCTGTGATTTTATGAGGAAGGGTGAAGTTAT
CGAGTGTGAACAGCCCGCCCTTGATAGCCTGCAGGGTATCATCCTGCAGAGCCTTCTGAAGGTAAAGATCGTCTACAGGG
GTGGGTGCGTCGAGAATCTGTCGTCATTGTTCATCTGGTACTGCCTAGGACTGGAGGAGCTCATCACACTCAGCGATGGA
GATCAAGAAGCAGCGGCGGACGAAGACGAACAAGCTGCAGGGACTACTAGCAAAGTGATCACACCCTTCCCTAAACTTAA
GGAACTGCATCTCCAAGGCCTACCAAAGTTGAGGGCGCTGAGCAGTAGCGCATGCATGCTGCGGTTCCCGTCACTGAAGA
GCCTCAAGATCGCCGATTGTCCAAGCCTCAAGAAGCTCAGACTCGCTGCCGCAGAACTGGAGAAGATACAATGCGCGAGG
GACTGGTTCGATGGGTTGGAGTGGGATGATGATGAGGTCAAAGCATCTTACGAGCCACTGTTGGATGGAAGAATGTGAGT
GAATTCAGTTTTTGCGTATTATGTTGGCCCAAAATTTGAGAGATACACTTT----------TGCCAGGC-TTTGCGTCCC
GGCTTTTCTCTACTA--------GTTTCGAAGAAAATAAAAACAG-GCTTACTCCACCCCCCCTTTTTTTTTACTTTTTC
AAAAAGATGCTTGGTACGTATTGATCAGTCACTGAATTCAGGGATTGATGTGCCCTTGTGTCATCATTCTAGTTTGAGAT
CTGCACAGTGGTGCCTGTCAGATGTTTGAGTTCAGGGATATGCCCTTGTGTCATCCTCCTTTTCTTCTTGGAGATTATGC
TTTTGTTTTTGTGTGGGCTGAACAAATGCACATCTGATGAAT--------------ATCAGCAGGTGTTGGTATGAATAT
CTTGCCGGTACCAACC-AGTGTTGATCC-------AAATCTGTATGCAGTACGTACGGGTGATGGCTGATGCAGCTAACC
TATCCCTTCTTTCCATGCGTGCTCTGCCCGTCTGCTGCAAATTGCAATCGACAATCCCTAAAAATCTACTCCCTCCGTTC
GGAATTACTTGTCGCGGAAATGGATGTATCTAGACGTATTTTAGTTCTAGATACATCTATATCCGAGACAAGTAGTTCCG
AACGAAGAGAGTAACTGTGATAGATGTATCTTC-TCACAGATTTTAGACTTGGCTAAAGATGAAAGGAAAACCTAGT---
TGCAAGCTGTGATGAACTCACGGGCGCCGGTGTATTGCGTACCTCGAGTTGCTGCAATCTCATATACTCAGAATTCCTGA
TTCTAGCGTTGCTGCCAACAGCGAATCTGTAGGATTTCACGCATTGGGAATAAATAGGG----ATTTGGAAGGTGGCGAC
CGGGGCGAACCTGCGAGTCGGCGGCGTTCAGGAACGGGGAGGACTGGGGGTACCGCCTACCTTTTTTTGAGACAAGGGGG
TACCGCCTACCTCCAACTGGACGCAGCTCCCCTGGGCCCACACGTCAGTGACCAAAGTCAGGTCTAACGCGGGGATCCAA
CTGGGCACTGGGCCGGTCCAAGGTTGTGCGCATAGTTAAAAAA-AAAGAGGGATTG---AAATTATACTATGGGCTTTTC
AAA---TAAACCTTGTCTCAGATCTAATTGATCGA----------------------------ATTGATTAGTGTCAGTC
ACCTCAAAAAACAAAGTTGATTAGCCTAAATTTTTTTGATCAAATTGATGTAAATTAAGCAAACCAGAACCACATGGCGT
AT
>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------------------
----------------------------------------S--------S-----------------------S------
----------------------------S-SSSSSSS----------------------S-S--S----------S----
-----S----------------------S------------------------------------S-----S--------
-----S---------------------S--S---SSS-------------------------------S-----------
--------------------------------------------------------------S-S---------S-----
--------------------------------------------S--SSS------------------------------
---S----------------------------S-----------------------------------------------
------------S------------------------S------------------------------------------
-----------------S--------------------S---S-------------------------------------
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------------------------S-------------------------------------------------------
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--------------------------------------------------------------------S-------S---
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----------------------------------------------S---------------------------------
----------------------------------------------------------------------S---------
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----------------------------S---------------------------------------------------
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------------S-------S-----------------------------------------------------------
-----S--------------------------------------------------------------------------
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-------------------------------------------------------------------S------------
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---------------------------------------------------------------------S----------
-----------------------------S---------------S----------------------------------
-------------------------------------------------------------------S------------
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-------------------------------------------------------------------S------------
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--------------------S-----------------------------------------------------------
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----------------------S---------------------------------------------------------
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---------------------------S----------------------------------------------------
-------------------------------------------S----S-------------------------------
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--------------------------------------------------S--S---------------S----------
---------------S---SS--S--------------------------------------------------------
---------------------------S----------------------------------------------------
------------------------------------------------------------------------------S-
------------------------S--------------------S----SS-S-----S--------------------
S--------------------S-------------------S-------------------------------------S
-------S-S-S-----------------------------------------------------SS-------------
--------------------------------------------------------------------------------
---------------------S----------S--------------------------------S-----------SSS
-----S------------------------------------------S-------------------------------
--------------SS----------------------------------------------------------------
-------------------------S-----------------------S------------------------------
--------------------------------------------------------------------------------
--S------------S---------------------------S---------------S--------------------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS------
----S-------------------------SSSSS------S--------------------------------------
--
>forward_476
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--------------------------------------------------------AACTGCACAGACATGCTCGA----
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>reverse_1647
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----------------------------------------------CAAGTTGGCAGGGAGTTCAG--------------
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--
>forward_769
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-----------------------------ACTCCTACTCTGAGCACCGC-------------------------------
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--
>reverse_1949
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----------------------------TGCCTGGGAGCTCTTCTGT---------------------------------
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--
>forward_833
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-------------AGCTCCAACTGATTTCCCCT-----------------------------------------------
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>reverse_2846
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---------------------------------------------GCTCTCACATATGCCGCTTG---------------
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>forward_2166
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------------------------------------------------------------------GCAGCTTCTTGGCA
TGGAGT--------------------------------------------------------------------------
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>reverse_4134
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-----------------------------------------------------GTGATCGGCAGGTGTTGGTA-------
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--
