>input_sequence_28655
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-ATGGCGTCGTCGAGGGTGATGGCGTCGTCGTCGTCG------AAGCCGCCGTCGCACACGGCGTCGGATCTCGCGCGCT
TCGCGCAGGCAGCTGGGAGGCCCGGCGG------CGGGGGCGGCAGCGGGCTGGGGTCCATGAACGTGGAGGAGCTGCTC
CGCGGCATCTACGGCGACGCCCCCACGCCGGCGCCCGACCGGCCGGCGTCGCCCCCCGTCCCGCCGCTCCCGGCGCCATC
GCGGCAACAGGCGACCGCGCGGCGGACGGCGGACGAGGTGTGGAGAGAGATCACCGGCGGTAGCGGCGGGGAGGAGGAGG
CGGCCCCGGCCTCCGCTGGCGGGGCCGGGGAGATGACGCTGGAGGACTTCCTGGCGAGGGAGGACGGCGCCGTCGTCAGG
GGGA------------------CGGAGGAGCAGGTGGCGATGCCGACGATGGCGCTTCTCGGCGGGGCGGAGGGCGCGCG
GGGCGGCGGGAGGGGGAGGAAGCGGCAGCTCATGGACCCCATGGACCGCGCCGCGATGCAGCGGCATAAGCGGATGATCA
AGAACCGCGAGTCCGCCGCGAGGTCACGGGAGAGGAAGCAGGTGGGCGGTCGAAACTCGTTACGTAGTACTGCTTTTAGT
TACTTTTTACACGAAAAGAAGATCAAAAGCTCCTCCCGGTCATGCGAATTTGACTGGGTGGTTTGGCGATAAATATTTTG
ATTCGTCCACTCCAGGCCTACATAGCGGAGCTCGAGTCGCTGGTCACCCAGCTCGAAGAGGAGAACGCCCACCTGTCCAA
AGAACAGGTACTGCTCCCTCCCACATGTCCTCTCGTGGTTTCCTCAAGCGTCGAGTTTCTTTTTTCTTTTTAAGAAAAAC
AATCTAAGTTTCCA-----TAGATCTCGCATTGCATGTTCATCTCAATGCATTTGTGTTCCCTTCGTTACGC--TTTGCA
AATTCTCATGGTGAATGTGTCTTTGGTGTGTTCCAGGAGGAGGCAAACCAGAGACGGCTGAAAGAGGTATGTTTATCAGA
TGTTGCTTTAAATTCTCTATCATGACTGTAAATGTATAAAGTACTTATTTCTTTTC------------------------
-----------AGGATTTCATTTGCTAACTACTGTAGTGTTTAAGATCAGCCTGAAATCACAAAACAAAATCTATCTTGT
TGGGG----TAGATTGCCCTTCTTCCCTCGATATCTAGGAT-----TTTTGAGCCGACTAATCTT-GCATGAAGCTCAAT
AGCC-TGGTTTTGAATCCCATGACCTCCTTTACTCTAGAAATTGCAACCTTCTCAACCTTTGTACATCGTCTACCAATTG
GTGGGTCAGTGCTTCGCAATGTTCTACTCCCTCCGTTCGGAATTACTCGTCTAAAAAATGGATGTATCTAGAACTAAAAT
ACGTCTAGATACATTCATTTTTACGACAAGTAATTCCGAACGGAGGGAGTAACACTAAAAGATAAATGTAAGACAAGCTT
TTTTGGACGGAGTAATACTTTCATGAAGCATAAGTCAGTC-TCCGTTGTAGTCTACCAACATTCTTCAA-------TATA
CTT-AAAATATTGCCTAACAGTGCTTTGATCTTGTGTGGGAATACACGTTTCAGAACATAGTCATGGTCACTATATGCCC
ATTAATGCATCAGATAAGCATGCTCTATGGTCTCTCTACTCTGGACTGTATGATGTGCTGTGCTTAGGCAATTTGGCACT
TTAAGGCCTTGTACACTGCAAGGTGCTTAGAGGAGGTGCTTAAAGAAATAAATCAGGTTTTCCTTAAGCATCGATGCTTA
TTTGTACAGGATAGACGCTTAACTAAGCGTCTCTTCTGTAGAAATAGGCACCGGTGCTTCAGACAAACTCGGTTTATTTT
TCTAAGCACCTCCCTAAGCATCTCCCATCGCACAAGGCCTAATGAGCTAACGTGCTTAAGGCCCCTAACCGGCTGTCCAC
TAGTAAGTGGCTTGCCAATTAAGTAAGATGCGATGTCGACAGCGTTCGGCCACGTCCACACAACACGAGCCACATGCCAA
GCGTGAGATCGTCTAATGG--AGTATGTCATTTTCTTTACTTTGGACTTTGGACCCTTTCCAACTCAACATGGGTACGTT
TCATAGGCCATTGTTATTAAA-TG--ATCACTGCCTGCAGTCTTTTGCTTAGCACTTCTCCGTGGCATCACCCATTTGTC
AATCAGGCAC-TGCGTTCGTCGTGTGTATTTTTTACTAGAGA--------------------------------------
--------------------------------------------------------------------------------
-------------------------TGTTGGAGGGAAAGTGGCCTGATTACACATCATGTTCATATGGGTAGGGAATGGT
CTGCATCCCAGCTTATAAAT-----AGTTCATATCCAGTTGGTCTTCCAGATTAATTGCTTTCAA-AAAAGAAAATTCTT
TCAAGCGCCATCGTTGCCTAAAAGAATTCTATTTTTATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGAATTTGCGTTTTTAGTTCATTTTAGATGCTTGTCTGAAGAA
ATTTATTTACTTCGTGCAGCTCAAGGAAAAATTGACTCCAGTCATTATTGCAAAAACGCCGTCACAAGATCTTAGAAGAA
CAAACTCAATGGAGTGGTAG------------------------------------------------------------
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>chr3B_1_TraesCS3B01G411300
GACAATCATATGAAGCATATCAGTGTATCACCACCCTGATCTACATAAGCCAACCCACCA-TATCACCATAACAGAATGA
CGACATGCTCGTAAAGGCCTGAAAGAAGGGACTGTTGAAGAAGAAGATGTTGTCGTCAAGTTGATGGAACCACACCAACG
GGACGAAAATTTTCAAGCTCCTCTCAGCAATGCCGGATCAACCAACATCGAGATGGTTTCTAAGTCAGAGAACTTTTATT
CGGCACAACACCTTCATTATCATCATCACGGCAACAAAAAGCTAACCAAAGAGATGCAACTATATAGAGAAGAAAAGGCG
AGAAATCCTTTCGGCGGGGATGC---------------GGGAGGGGTTTACAATATGAACACAAATACTACAATCTCATA
CTATC-ATTTTTTTTACTGGAATCTCATATCCTAATGGCGCGAATCACACAAATGAGCCAGAGCAGAGCACGGGGGAGAC
GAGGCCGCAGTCGATCCCATCTTATCTTCATCCTGTTTACCCTGGCACCCACAGTATACGTCACCTGCTCAGCAGGGCCA
GGTCAGAAAAAGGCAAATGGAAGCAATCCAACGGGCTGCCGGCGCGCCCGATCGGTC-GGAGATCAAATCAAACGCCGAA
CCCGCGCGAAAGCACGGTCAATCATTGGCCAATCGACGGCTATAAGCCCCCCGCCCCATCTTCCCCGCCGATCATCCTCC
CATCACATCGCGCCGGTCAGTGGTCACTCGCGCCGTAATCACACGCGCCTTCCGTAACACTCGGGCGAGGAGCGG-----
AAGCCACGAGAAGCCGAGAGCACGCACGCGCGCACGCGACGCCAACTAACGCGCCTCCCCCACGTTTCCAGGGAGCTCGC
CACG------------------TCTGACCAACCAGCCAACCAACCAACCACCACCCCGTGCTGGCCCGGAGAACTCCGAC
GAGGACGGGACGGAGCTGAACCGGGAGGCGCGGCCGCGGCGATGGCCGGGTGGCGGGCCTAGGCGGGGGAGCGGCGAGCG
CATGGCGTCGTCGAGGGTGATGGCGTCGTCGTCGTCG------AAGCCGCCGTCGCACACGGCGTCGGATCTCGCGCGCT
TCGCGCAGGCAGCTGGGAGGCCCGGCGG------CGGGGGCGGCAGCGGGCTGGGGTCCATGAACGTGGAGGAGCTGCTC
CGCGGCATCTACGGCGACGCCCCCACGCCGGCGCCCGACCGGCCGGCGTCGCCCCCCGTCCCGCCGCTCCCGGCGCCATC
GCGGCAACAGGCGACCGCGCGGCGGACGGCGGACGAGGTGTGGAGAGAGATCACCGGCGGTAGCGGCGGGGAGGAGGAGG
CGGCCCCGGCCTCCGCTGGCGGGGCCGGGGAGATGACGCTGGAGGACTTCCTGGCGAGGGAGGACGGCGCCGTCGTCAGG
GGGA------------------CGGAGGAGCAGGTGGCGATGCCGACGATGGCGCTTCTCGGCGGGGCGGAGGGCGCGCG
GGGCGGCGGGAGGGGGAGGAAGCGGCAGCTCATGGACCCCATGGACCGCGCCGCGATGCAGCGGCATAAGCGGATGATCA
AGAACCGCGAGTCCGCCGCGAGGTCACGGGAGAGGAAGCAGGTGGGCGGTCGAAACTCGTTACGTAGTACTGCTTTTAGT
TACTTTTTACACGAAAAGAAGATCAAAAGCTCCTCCCGGTCATGCGAATTTGACTGGGTGGTTTGGCGATAAATATTTTG
ATTCGTCCACTCCAGGCCTACATAGCGGAGCTCGAGTCGCTGGTCACCCAGCTCGAAGAGGAGAACGCCCACCTGTCCAA
AGAACAGGTACTGCTCCCTCCCACATGTCCTCTCGTGGTTTCCTCAAGCGTCGAGTTTCTTTTTTCTTTTTAAGAAAAAC
AATCTAAGTTTCCA-----TAGATCTCGCATTGCATGTTCATCTCAATGCATTTGTGTTCCCTTCGTTACGC--TTTGCA
AATTCTCATGGTGAATGTGTCTTTGGTGTGTTCCAGGAGGAGGCAAACCAGAGACGGCTGAAAGAGGTATGTTTATCAGA
TGTTGCTTTAAATTCTCTATCATGACTGTAAATGTATAAAGTACTTATTTCTTTTC------------------------
-----------AGGATTTCATTTGCTAACTACTGTAGTGTTTAAGATCAGCCTGAAATCACAAAACAAAATCTATCTTGT
TGGGG----TAGATTGCCCTTCTTCCCTCGATATCTAGGAT-----TTTTGAGCCGACTAATCTT-GCATGAAGCTCAAT
AGCC-TGGTTTTGAATCCCATGACCTCCTTTACTCTAGAAATTGCAACCTTCTCAACCTTTGTACATCGTCTACCAATTG
GTGGGTCAGTGCTTCGCAATGTTCTACTCCCTCCGTTCGGAATTACTCGTCTAAAAAATGGATGTATCTAGAACTAAAAT
ACGTCTAGATACATTCATTTTTACGACAAGTAATTCCGAACGGAGGGAGTAACACTAAAAGATAAATGTAAGACAAGCTT
TTTTGGACGGAGTAATACTTTCATGAAGCATAAGTCAGTC-TCCGTTGTAGTCTACCAACATTCTTCAA-------TATA
CTT-AAAATATTGCCTAACAGTGCTTTGATCTTGTGTGGGAATACACGTTTCAGAACATAGTCATGGTCACTATATGCCC
ATTAATGCATCAGATAAGCATGCTCTATGGTCTCTCTACTCTGGACTGTATGATGTGCTGTGCTTAGGCAATTTGGCACT
TTAAGGCCTTGTACACTGCAAGGTGCTTAGAGGAGGTGCTTAAAGAAATAAATCAGGTTTTCCTTAAGCATCGATGCTTA
TTTGTACAGGATAGACGCTTAACTAAGCGTCTCTTCTGTAGAAATAGGCACCGGTGCTTCAGACAAACTCGGTTTATTTT
TCTAAGCACCTCCCTAAGCATCTCCCATCGCACAAGGCCTAATGAGCTAACGTGCTTAAGGCCCCTAACCGGCTGTCCAC
TAGTAAGTGGCTTGCCAATTAAGTAAGATGCGATGTCGACAGCGTTCGGCCACGTCCACACAACACGAGCCACATGCCAA
GCGTGAGATCGTCTAATGG--AGTATGTCATTTTCTTTACTTTGGACTTTGGACCCTTTCCAACTCAACATGGGTACGTT
TCATAGGCCATTGTTATTAAA-TG--ATCACTGCCTGCAGTCTTTTGCTTAGCACTTCTCCGTGGCATCACCCATTTGTC
AATCAGGCAC-TGCGTTCGTCGTGTGTATTTTTTACTAGAGA--------------------------------------
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-------------------------TGTTGGAGGGAAAGTGGCCTGATTACACATCATGTTCATATGGGTAGGGAATGGT
CTGCATCCCAGCTTATAAAT-----AGTTCATATCCAGTTGGTCTTCCAGATTAATTGCTTTCAA-AAAAGAAAATTCTT
TCAAGCGCCATCGTTGCCTAAAAGAATTCTATTTTTATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGAATTTGCGTTTTTAGTTCATTTTAGATGCTTGTCTGAAGAA
ATTTATTTACTTCGTGCAGCTCAAGGAAAAATTGACTCCAGTCATTATTGCAAAAACGCCGTCACAAGATCTTAGAAGAA
CAAACTCAATGGAGTGGTAGACATGAGCCAAGCTCAGTAGCCATCCCCTTACAGCTATGTAGATTTTGATTTGTTTGTCT
GTCATTCCTCTGTTTATTGGAGTTAACTCAGTTGTTGTAACTTAGTAGATATAGCATAAACAGCTTAAATGGAATCATAA
TGTGTAGAGCGGAAGGCTGCGTTTGAGCAAAATGGAATCTCATCAGCAGCTTATATTCTGTCTGATTTGCCTT-TCTTTT
TATTTGCATTGCTGCCAGTATGCATGGCGATG------------------------------------------------
-----------------------TAGAGCACAATACATACAGAACATCAGAATGGTGTGCAAACATAATGCTAGAGACAT
GTAGCGAACAGAATAAGG-CGCAAGGCATGAAACAAAATAAGCAAGCGA-CCATAGGC----------------------
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--------------------------------------------------ACGCTCAAATTTAGCATTTGTATTGTAGTA
CAGCAAAGCTTATCAGCATAACTC-------TGATGATACAAGAACCAACAAGAAACTCTTTTGGTTTTCGCCCGGTTTT
CCCGAATTAACCGAGCAACTCTTTTCTTTTTAATGAATGCAGGATAACTGCCATTTCGAAAAAAAGAACCAACAAGAAAC
TTCCGCCCCCAAGGATAACCGCTACATGATACAGGTTGTGCCTGGAAATTAGAGTACCCACGT-ATACATAGGGCTCAAC
ATGGTTGGTCTATAAGAATGGGGGAGAATACACAATGGTTCTTGGATGTGTGATC-------------------------
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---------------------------------------------------AAAGGATGCTCGCGCACTCTCGCAGCCGC
TGCCTTAAACCCCAATTACCGAGAGAAGATCCTGCCTAACATCGGCAACGAAGATACTTCCAGACTCGCACCACCCAGCA
ACCACATCTGTGTTTGCACACTGCAGATCAGAAGCACATTGCCGCATTAGGGACTTCAACAGTGCATTTGTTACACTTGT
ATGCATATATAATG--TTTTTTCTGAGACTATTTTTCCTCCCACGGGTGGGGGGCTGG-GGGGTACCTTTGAAAAGCCCA
GCCAGTTGGAATCACCTCGAAATGAGAATGCGCGCTTACTTTCTCTCCAGCGT
>chr3A_4
---AATCATATGAAGCATATCAGTGGATCACCATCCTGATCTACATATGCCAACCCACCAATATCGTCATAATAGAATGA
TGACATGTTCGTAAAGGCCTGAAAGAAGGGACTAGTGAAGAAGATGATGTTGTCGTCGAGTCGATGGAACCACACCAACG
GGACGAAAACTCTCAAGCTCCTCTCAGCAATGCCGGATCAACCAACACCGAGATGGGATCTAAGTCGGAGAACTTTTATT
CGACACATCACCTTCATTACCATCATCAAGACAACAAAAGT-TAACCAAAAAGACCCTACCATATAGAGAACAAAATGCG
AGAAATCATTTCGGCGGTGGAGTGATGGGCGGGGACGTGGGAGGGGTTTACAATATGAACACAAACACTACAATCTCATA
CCATCGATTTTTTTTACTGGAATCTCATATCCTAAAGGCGCCAATTACACAAATGAGCCACAGCAGAGCACGGGTGAGAC
GAGGCCGCAGCCGATCCCATCTTATCTTCACCCTGTTTACCCTGGCACCCACAGTATACGTCACCTGCCCAGCGGGGCCA
GGTCAGAAAAAGGCAAGAGGAAGCAATCCAACGGGCTGCCGGCGCGCCCGATCCGACGGGAGATCAAATCAAACGCCGAA
CCCGCGCGAAAGCACGGTCAATCATTGGCCAATCGACGGCTATAAACCCCCCGCCCCATCTTCCCCGCCGATCACCCTCA
CATCACATCGCGCCGGTCAGTGGTCACTCGCGCCGTAATCACACACGCCCTCCGTAACACTCGTGCGAGGCGCGG-----
AAGCCACGAGAAGCCGAGAGCACGCGCGCGCGCACGCGACGCCAACCGACGCGCCTCCCCCACGTTTCCAGGGCTCTCGC
CCGGCCGGCCGGCCCCCTCTGCTCTGGCCTGCCAGCCA---AACCAACCACCGCCCCGCGCTGGTTCAGGAACCTCCC--
---GACGGGGACGGA--------------------GCGGCGATGGCCGGGAGGACGGCCTAGGCGGGGGAGCGGCGAGCG
CATGGCGTCGTCGAGGGTGATGGCGTCGTCGTCGTCGTCGTCTAAGCCGCCGTCGCACACGGCGTCGGATCTCGCGCGCT
TCGCGCAGGCCGCGGGGAGGCCCGGCGG------CGGGGGCGGCAGCGGGATGGGGTCCATGAACGTGGAGGAGCTGCTC
CGCGGCATCTACGGTGACGCCCCCACGTCGGCGCCCGACCGGCCGGCGTCGCCCGTTATC---CCGCCCGTGGCGGCGCC
GCGGCAGCAGGCGGCCCCGCGGCGGACGGCGGACGAGGTGTGGAGGGAGATCACCGGCGGCAGCGGCGGGGAGGAGGAGG
CGGCCCCGGCCACGGCTGGCGGGGCCGGGGAGATGACGCTGGAGGACTTCCTGGCGAGGGAGGAGGGCGCCGCCGTCAGG
GGCCCCGGCCCTTCCGCGGCGCCGGAGGAGCAGGCGGCGATGCCGACGATGGCGCTTCTCGGCGGGGCGGAGGGCGCGCG
GGGCGGCGGGAGGGGGAGGAAGCGGCAGCTCATGGACCCCATGGACCGCGCCGCGATGCAGCGGCAGAAGCGGATGATCA
AGAACCGCGAGTCCGCGGCGAGGTCGCGAGAGAGGAAGCAGGTGGGCGGTAGAAACTCGTTACGTA---CTGCTTTTACT
TTTACAA--ACACCGATCA------AAAACTCCTCCTGATCATGCGAATTTGACTGAGTGGTTTGGCGGT-AATATTTTG
GTTCGTT-----CAGGCCTACATAGCCGAGCTCGAGTCTTTGGTCACGCAGCTCGAAGAGGAGAACGCCCACCTGTCCAA
AGAGCAGGTATAGAATGTGGTTGTGCCCTTTCTTC--------------------------TTTCCTTTTTAAGAGAAAA
TAAGTCGGGTTTCCATGGTTAGATCTTGCATTGCATGTTTTTTTCAGTGCATCTGTGTTCCATTAGCTACAGTTTTAGCA
AACTCTCATGGT-AATATGTCTTTGGTGTTTTCTAGGAGGAGACAAACCAGAGGCGGCTTAAAGAGGTATGTTCATGATA
TGTTGCTTTTAATTCTGTATCATGTTTGTAAGTGTAGAAAGCACCTCTA-CTTTCCCACATAATAACATGCCACACAATT
CAAAAGTGATTACGATTTCATTTGCTG------------------------------AAACAAAACATAATCTACCTTGT
TGAAGTAGCTAGACTGCCCTTCTTCCCTCAATATCAATAGCTAGGATTTTGAGCGGACTAATGGCAGCATGAAGCTCAAT
AGCCCTGGTTTTGGATCCCATGACCTCCTTTACTCTAGAAATTTCAACCTTCTGAACATTTGAAGATATTCCACCACTTG
GTGGGTCAGTTATTCGCGATGTTCCATCA---------------------------------------------------
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-------------AATACTTTCAGAAAGCACAAGTCAGCTACCATCTTTAGTCTGCCAACATTCTTCAGTAATCAGTATA
CTT-AAATTAATTCATAACAGTGCTTTGATCTTGTGCGGGAATACACGTTCCAGAACATATCCACGCTCACTGTATGCCC
ATTAATACATCAGATAAGCACGCTCTATGGTCTCTCTACTCTGGACTGTATGATGTGCTGTGCATCGGCAATTTGTCACT
TC------------------------------------------------------------------------------
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----------------------------------------AATGAGCTAACGTGCTCAAGGCCCCTAACTGGCTGCCCAC
---TAAGTGGCTTGTCAATTAAGTAAGATGCGATGTCGACAGCGTTCGGCCGCGTCCACACATCACGAGCCACATGCCAA
GCGTGAGGTCATCTATAGTTCC--ATGCCATTTTCTTTACTTTGGAGCTTGGACCCTTTCCAACTCAACATGGCTACATT
TCATAGGTCACGGGATTAAAATAGTTATCACAGCCTGCAGG--TTTGCCTAGCACTTTACTGTGACATCACACATTTGTT
AAACTGAGTCATGTGTGCGTCCTATGTATCACACAATGATC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AATGGT
CTGCATCTCATCTTGGAAAT-----AGTTCACCTCCAGTTGATTTTGCAGACTGGTTGCCTTCAT-AAAGGAAATTTCTT
TTAGGCGCCATAACTCGTATTCCCATAACTTGTATATATATTTCGAGTTAGTATGTGCC-CCCATAACTCGTATTCCAGA
AAGAAAAAAATC--CCCTGACTTAGTG-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTTTTCAGTTCATTTTAGATGCTTGTCTGAAGAA
ATCTATTTACTTCATGCAGCTCAAGGAAAAAGTGACTCCAGTCATCATTGCAAAAACGCCGTCGCAAGATCTTAGAAGAA
CAAACTCAATGGAGTGGTAGACATGAGCCAAC------AGCCATCCCCTTACAACTATATAGATTTTGATTTGTTTGCCT
GCCATTCTTCTGTTTACTGGACTTAACTCAGTTGTTGTAACTTAGTAGAAATAGCATAAACAACTTAAATGGAATCATAA
TGTGTAGAGCGGAAGGCTGCATTTGAGCAAAAAGGAGTCTCATCAGCAGCTTATATTCTGTCTGATCTGCCTTCTCTTTT
TATTTGCATTGCAGCCAGTATGTATGGCAATGTAGAGCACATTTTTTCCCGAAAAGGAGGATTACCCCCGGCCTCTGCAT
CACCATGATGCACACAGCCATGATAGAGCACAATACATACAGAGCATCAAAATGGTGTGCAAACATAATGCTAGAGACAT
ATAGCGAACAGAATAACGCCGCAAGGCATGAAACACAATAAGTAAGCGAACCATAGGA----------------------
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--------------------------------------------------ACGCTCAAATGTAGCATTCGTATTGTAAGC
CAGCAAAGCTTATCAGCATAACTC-------TGATGATACAAGAACC---------------------------------
----------------------------------------------------------------------AACAAGAAAC
TTCCGCCCCCAAGGATAACCGCTACATGATACAGGTTGTGCCTGGAAATTAGAGTACCGACATCATTCATAGTGCTCAAC
ATGGTCGG----TAAGAATGGGGGAGAATACACAATGGTTCTTGGATGTATGATC-------------------------
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---------------------------------------------------AAAGGATGCTCGTGCACTCTCAAC-----
-GCCTTAAACCCCAATTACCGAGAGAAGATCCTGCCTAACATCGGCAACGAAGATACTTCCAGACTCGCACCACCCAGCA
ACCACATCTGTATTCGCACACTGCAGATCAGAAACACATTCCCGCATTAGGGACTTTGACAGTGCATTTGTTGCGCTTGT
ATGCATATATAATT--TTTTGTCTGAGGCTATTTTTCCTCCCACTGGGGTGGGGGCCAAGGGGTACCTTTGAAAAGCCCA
GCCAGTTCGAATCACCTCGAAATGAGAATGCGCACTTACTTTCTCTCCAGCGT
>chr3D_429
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---------------------------------------------CACACAAATGAGCCACAGCACCGCACGGGTGAGAC
GAGGCCGCAGTCGATCCCATCTTATCTTCATCCTGTTTACCCTGGCACCCACAGTATACGTCACCTGCCCAGCGGGGCCA
GGTCAGAAAAAGGCAAGAGGAAGCAATCCAAGGTGCTGCCGGCGCGCCCGATCCGACGGGAGATCAAATCAAACCCCGAA
CCCGCGCGAAAGCACGGTCAATCATTGGCCAATCGACGGCTATAAACCCCCCGCCCCATCTTCCCCGCCGATCT-CCTCA
CATCACATCGCGCCGGTCAGTGGTCACTCGCGCCGTAATCGCACGCACCTTCCGTAACACTCGGGCGAGGAGCGGAGCGG
AAGCCACGAGAAGCCGAGAGCACGCACGCGCGCACGCGACGCCAACCAACGCGTCTCCCCCACGTTTCCAGGGAGCTCGC
--------CCGGCCCCCTCTGCTCTGACCAGCCAGCCA---AACCAACCACCGCCCCGCGCCGGTCCGGAAACCTCCGGC
GAGGACGGGGACGGA--------------------GCGGCGTCGGCCGGGAGGTGGGCCTAGGAGGGAGAGCGGCGAGCG
CATGGCGTCGTCGAGGGTGATGGCGTCGTCGTCGAA------------GCCGTCGCACACGGCGTCGGATCTCGCGCGCT
TCGCGCAGGCCGCGGGGAGGCCCGGCGGCGGGGGCGGGGGCGGCAGCGGGCTGGGGTCCATGAACGTGGAGGAGCTGCTC
CGCGGCATCTACAGCGACGCGCCCACGCCGGCGCACGACCGGCCGGCGTCGCCCCCCGTCCCGCCGCTCCCGGCGGCGCC
GCGGCAGCAGGCGACCGCGCGGCGGACGGTGGACGAGGTGTGGAGGGAGATCACTGGCGGCAGCGGCGGGGAGGAGGAGG
CGGCCCCGGCCACCGCTGGCGGGGCCGCGGAGATGACGCTGGAGGACTTCCTGGCGAGGGAGGACGGCGCCGTCGTCAGG
GGGG------------------CGGAGGAGCAGGTAGCGATGCCGACGATGGCGCTTCTCGGCGGGGCGGAGGGCGCGCG
GGGCGGCGGGAGGGGGAGGAAGCGGCAGCTCATGGACCCCATGGACCGCGCCGCGATGCAGCGGCAGAAGCGGATGATCA
AGAACCGCGAGTCCGCTGCGAGGTCACGAGAGAGGAAGCAGGTGGGCGGTACAAACTCGTTACGTAGTACTGCCTTTACT
TACTTTTACACAAAGATCG------AAAGCTCCTTCTGGCCATGCGAATTTGACGGAGTGGTTTGGCGGT-AATATTTTG
GTTCGTCCGCTCCAGGCCTACATAGCCGAGCTCGAGTCGTTGGTCACGCAGCTCGAAGAGGAGAACGCCCACCTGTCCAA
AGAGCAGGTATAGAATGTGACTGTGCCCTTTCTTCAGCCGAGTTTTCTTC------------------------------
--AGCCGAGTTTCCATGACTAGATCTTGCATTGCATGTTTGTTTCAGTGCATCTGTGTTCCATTAGCTACGGTTTTAG--
AACTCTCATGGT-GATATGTCTTTGGTGTGTTCCAGGAGGAGGCAAACCAGAGACGGCTTAAAGAGGTATGTTTATGAGA
TGTTGCTTGAAATTCG--ATCATGATTCTAAGTGTAGAAAGTACTTCTTTCTTTACCACATAATAGTATGCCACACGATT
CCAAAGTTATTAGGATTTGAATGGCTAAC-----TAGTGATTATGATCAGCCCGCTAACAGAAAACACAATCTATCTCAT
TGAAG----TAGATTGCCCTTCTCCTCTAC-----------------TTTGAGCGGACTGATCGCAGCATGAAGCTCAAT
AGCC-TGGATTTGGATCCCATTACCTCCTTTACTCTAGAAATTGCAACCTTGTGAACACTAGAAGATTTTCTACCACTTG
GTGGGTCAGTGTTTCGCGATGTTTTCTATCAAAT----------------------------------------------
--------------------------------------------------------------------------------
--------------ATACTTTCAGAAAGCATAACTCAGCCTTCCGTCTTAGCCTGCCAACATTCTTCGG-------CACA
CTTAAAAATATTGCCTGACAGTGCTTTGATCTTGTGTGGGAATACACGTTTCAGAACATAATCATGGTTACTGTATGCCC
ATTAATGCATCAGATAAGCATGCTCTATGGTTTCTCTACTGTGGACTGTATGATGTGCTGTCCTTCGCCAATTTGGCACT
CC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AATGAGCTAACGTGCTTAAGGCCCCTAACCGGCTGTCCAC
---TAAGTGGCTTGTCAATTAAGTAAGATGCGATGTCGACAGCGTTCGGCCACGTCCACACAGCACGAGCCACATGCCAA
GCGTGAGATCGTCTATGTTCTAGTATGTCATTTTCTTTACTTTGGAGTTTGGACCCTTTCCAACTCAACGTGGGTACATT
TCATAGGCCATTCTTATTAAAATG--ATCACAGCCTGCAGTCTTTTGCTTAGCACTTTTCCGTGACATCACCCATTTGTC
AATCAGGCAC-TGCGTTCGTCGTATGTATTTTTTACTCCATACGTACCTAAATATAAATCTTTTCAGAAATTTTATATGG
ACTACATACAGAGCAAAATAAGTGAATCTATACTCTAAAACATGTCTATATACATTCATATGTAGTTTATATTGAAATCT
TTGAAAAGACTTATAGTTAGAAACGTGTTCCAGGCAAAGTGGTCTGATCACACATCATGTTCATGTGGATAGGGAATGGT
CTGCATCTCGGCTTAGAAATGGAGTAGTTCACATCCAGTTGATTTTCCAGATTAATTGCCTTCAAAAAAAGAAAATTCTT
TCAGGCGCCATCATTGCCTAAAAGAATTCTATAT------TTTTTAGTCAGTATGTGACTCCCCTTACTCGTATTCCGGA
AAAGAAAAAATGATCCCTGTCTTCGTG-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTTTTTAATTCATTTTAGATGCTTGTCTGAACAA
ATTTATCTACTTCATGCAGCTCAAGGAAAAGGTGACTCCAGTCATCATTGCAAAAACGCCGTCACAAGATCTTAGAAGAA
CAAACTCAATGGAGTGGTAGACATGAACCAAGCTCAGTAGCTATCCCCTTACAGCTATATAGATTTTGATTTGTTTGTTT
GCCATTCTTCTGTTTATTGGAGTTAACTCAGTTGTTGTAACCTAGTAGAAATAGCATAAACATCTTAAATGGGATCATAA
TGTGTAGAGCGGAAGGCTGCATTTGAGCAAAAAGGAATCTCATCAGCAGCTTATATTCTGTCTGATTTGCA------TTT
TTCTTTTTATGCTGCCAGTATGTATAGTGATG------------------------------------------------
-----------------------TAGAGCACAATACAAACAGAACATCAAAATAATGTTCAAACATAATGCTAGAGACAT
TTAGCGAACAGAATCACA-TGCAAGACATGAAACAAAATAACTAACCGAACAATAAGAGCAACTCCAACGCGGCGACCCC
GCCGTCTGTTTGGCTCGCCGCGGAAAAAGTAATGGCCCAACGCACCAACCCATTCCCAAATCGCGTCCGCGCGGTCCCAT
TTCCAGCCCAAATTTGGGCCTGAAATGCATCGGCGCGGACGCGCCGCCCGTCCTTTCGGTGTCCGCCGCGTCCCCACCTG
ACGGGCGGTCACTACCTCCCGCGTCTTTATTAATGACGTGTGGCGACCGCGGGCCCACGCGTCAGCGACGGCGTGGCGAC
CTTTTTTAATCCGAGCGTGTGGGAAGGGGGGGGGGCGTCCTCATTCTCTTCCAGACGCCCGTCCCCATCTAGCCACCCTC
TGCTCCCCGTCGGACAACCCTAGCCACCATGGGGTTCTTCTCCGCCAAGAACAAGGGCAAGGCCCCCGCCGGCCCTTCGC
GCGCGCTCCCCCCGCCTCCGTCGGCGTCTTCCCGCCGGCCAAGGCAGCGCATCAGCGTCCCAGTGCACCAGGCGAAGTGG
CACTTGAAGCACCGCACCCGCAGTCGGCGCGGAAGAGGTGCGGCGTCGGCAGCAGCACCTTAACCCCGCCTACGCATCAG
ACTCTCCCGATTGGGAGGTCCGGTTGGCGTTGGAGCACGAGGAGCTGCGACGGCGCGACGGCCGCGACGTGGAGGATGGC
ACCCCGCCGCCCCTTGTCGTGCGCGACGAGGACCAGGAGGCGGAGGCCGCCTACCGGGCGGCGCTGGCGGCTGCCCTCCG
CGAAAGCGAGGAAGAGGAGGCGGCGTACCAGGACCGGCTGTCGGAGGCCATGGCGCTCTCCGCTGCCGGCGACTGCGTCG
TCCCGCCGGCGCTGCTCATGTCGTCGTCCACCGTCAAGCCCGAGCAGTACACATGGCACGGATACGTGCGCGAGTGGGTC
AGCGCGCCCCCCATCTGGCTTGGGGTGACACCGGCCCAGGAGCAGATCTACCTGGAGCAATGGCGGCGGCGCATGCTGAT
GGAGGAGCGCCGCGAGGGTAAGGAGCTTGAGCAACTGGAGCACGACGCGTAGGAGGAGCGCCGCGAGGCGGAGGCGGAGG
AGCGCCGTGCCCGCGGCGGGCCATGCGCCAGCGCAGCCGATGACGGTACAACCAGCGGCCGACGACGTCGCCACAGCCTG
GGAGACGGCGTTCCCCTGGGCTGGCCCGGCGCAGACGCTCATCGACCTCACCGGCCCCGACGCCGACGCCTAGGGCAACG
CGTCTCCTAGTTTTAAGTTTTATTTAATGTTATTTCTCTTAATGTAAAGCAGACTCATGGACTCTCGCCGGCCATTGTGG
CCATCACTAATGTTTAATTAACGTTTTTTATTTTCAAATATTTGTGATTTTTTTTTTCACGCCAACTAAAAAATGGGTCA
GGTCAGCGTTGGGCGCAAGTGCCGACTCAAATGCGAAAGCGGACATGGGTGTCCGCCGAGCCGACCCAAATGGGTAAAAG
CAGACAAAATCACCGTCTGTTTGGGTCGCCGCGTTGGAGTTGCTCTAAGCACACCCAAATTTAGCA-TTGTACTGTAAGC
CAGCAAAGCTTATTAACATAACTCTGATGAGTGATGATACAAGAACC---------------------------------
----------------------------------------------------------------------AACAAGAAAC
TTCTGCCCC-----------------------------------------------------------------------
-------------AAGAATGGGGGAGAATATGTTAAGAAGAGGAAACAAGATCTTTCTAGACACATGACTATAGTGGAGG
AGATCAAAGCTCTGTTGAGCACACGTCACACTTGTATTACTCTTGTAAAGCGAGACCAGAACTATATTAGTCACTTCTTA
GCTAGTTATGCTAGGCGTAGCAATCGTACTGCAGTTTGGCTTTGTTCTGGCCCGGAGAACGTCGAGAACCTGTGTCTCGC
TGATTGTACCCGTGGGGTTGAGTAATACTAAGTTTCATTCGCAAAAAAGAAAAAGGATGCTCGTGCACTCTCGCC-----
-GCCTTAAACCCCAATTACCGAG---AGATCCTGCCTAACATCAGCAACGAAGATACTTCCAGACTCGCACCACCCAGCA
ACCACATCTGTGTTCGCACACTGCAGATCAGAAACACATTGCCGCATTAGGGACTTCGACAGTACATTTGTTGCGCTGGT
ATGCATATATAATTTTTTTTGTCTGAGGCTATTTTTCCTCCCACTGGGGTGGGGGCAGGGTAGTACCTTTGAAAAGCCCA
GCCAGTTCGAATCACCTCGGAATGAGAATGCACGCTCACTTTCTCTCCAGCGT
>SNPs
SSS----------------------S-------S-------------S-----------------SS-----S-------
S------S-------------------------SS---------S------------S---S------------------
---------S-S-----------------------------------S--------SS--------S-------------
--S----S-----------S--------S-S--------SSS--------S---SS-S--S----------S----S---
-------S---------S-SS-S------------------------------------------S--------------
-S---------------------------------S-----S------------------S-------------S-----
--------------------------------------------------------------------S----S------
----------------SS-----------------------------------S-S------------------------
---------------------------------------------S----------------------------S----S
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
-SS---------------------------S-------SSS-----------S-----S-----S-----S-S-----S-
---------SSS-SSSSSSSSSSSSSSSSSSSSSS---------------S--S--------------------------
--------------------------------------------------------------------------------
----------S--S------------------------------------------------------------------
---------------------------------------------------------------------------S-SS-
------S--------------------------------------S--------------S-------------------
-----------S--------------------------------------------------------------------
---S----------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------S-----------S---------------------S---------------------------S-
-------SSSSSS-S-SS-SSSSSS-----------S-------------------S-----------S-S---------
S-------S-----------------S------------S-------S--------------------------------
---S------SS-SSSSSSS-SSSSSSSSS---SSS-SSSSSS-SSSSSSSSSSSSSSSSS---S----------S---S
S-SS-SS-S--S-S------------S------------SS-S---S-----S--------S--S-S----S----S---
--S---------S---S------------------------------------------S----------------S---
----------------S--------S-----S----S---------S-------S-------------------------
-----------------------------SSSSS-----S---S--------S-SS-S---------S------------
--SS-------------------------S-----S-SSSS-------------S--------SS---------------
-------------S---------------------------------------S---S----S-S--SS-------S---
-----------S-----S--------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------SS-------------S--------S------S-------------S-----------
------------------------------------------------------------S-----------S-------
-----------------------------------------------------------------S--------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
SSS-----------S-----------------------------------------------S-----------------
---------------SS-S---------------------------S------------------------------S--
-------------------------------S-------------------------S------S---------------
-----------------------S-------------SS-S---------------------------------------
--------------------------------------------------------------------------------
-----------------------------SS---S-------S-----S---------------S---S-----------
-------S-------S---------------S---------S-S---------------S--------------------
---S--------S----------------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
-------------S-----------------S-------------S----------------------------------
----------------------------------------------------------S---------------------
-S-----S-----------------------------------------S------------S-----------------
--------------------S-----------S-----------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------------------S------------------------------
S---------------S-------------------------S--------------S----------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------SSS
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
----------------------------------------------------------S--S----S-----S-------
-----S--SSSS--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------SSSSSS
S-------------------------------------------------------------------------------
--------------S------------------S-----------------------S--------------S-S-----
-------------S------S------S----------------S--S-S----SSS-----------------------
-------S---------------------------------------------
>forward_115
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---------------GGCCTGAAAGAAGGGACTGT---------------------------------------------
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>reverse_1858
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-----------------CTCCCACATGTCCTCTCGTG-------------------------------------------
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>forward_1787
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-------CACTCCAGGCCTACATAGCG-----------------------------------------------------
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>reverse_2976
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---------------AAGCATCTCCCATCGCACAA---------------------------------------------
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>forward_2535
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-----------------------------------CCGAACGGAGGGAGTAACAC-------------------------
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>reverse_6057
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--------------------------------------------------------CTCTTTTGGTTTTCGCCCGG----
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-----------------------------------------------------
