>input_sequence_28389
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-----------------------------------------ATGATCC---CGACGCGGCTGCTCTGCTGCTGCTACTTG
CTGTCGTTCATCTTCATCGCCGTCGCCCCGCGCACGACCGATTCCAAGCTGGTGACCAGCCTCCCCGGCTTCGACGGCCG
CCTCCCCTTCCGCCTCCACACTGGGTGG----GTACCTTCGTCTCCATCTCAAGCTCCACGAGCTAAGGTCTATCTACTT
CTTGGATTCCTATAAATCGACATGTCCATGAATGAATTGAATCGCAAGGTACGTGGAGGTGGACCCGGGCACGGAGCTCT
TCTACTACTTCGTCGAGTCGGAGGCCGGCGGCGAGGGCAACCCTTTCCTTCTCTGGCTCACCGGCGGCGACCGCTGCTCC
GCCTTCAGCGGCCTCGCCTACGAGATCGGTCTCTCTTTTCATTCAGTTA---ACTATCATTAATTGCGGGGTCGATCGCC
TCTACAGTCTCCATCTGCAACATGATCAC---ATCATTCATGTATAGTGCAGGTCCCGTCAGGTTCGTCCTGCAGCCCTA
CAATGGCAGCTTACCACGCCTGCACATCAACCCAAACTCATGGACAAAGGTCTTCCA----AGCTTCTCGTTCCATCTGA
ATATG------------------TATGTACGCATGCTACTTGC------ACGC---TAATACTAAGGTAATGTCCACCGG
CGCAGGTGGCACACATCTTGTTCGTCGATTCGCCGGTCGGTGCTGGATTTTCCTTTTCCAAGCAACCCAAGGGATACGAG
GTCGGGGATGTGTCCTCCTCGTTGCAGCTCCATAACTTCCTCATCAAGTGGTTCAGCGACCACCCCACATACCTGAAAAA
TCCTTTCTATATCGGTGGAGATTCCTATGCCGGAAAACTTGTGCCATATATCGCACACATCATTTCACAAGGTACATATA
-----TATATACCCCGTGCCCTGTTTGGCAACTCCATCTGTGTAAATCTGTGTGCAAACTAGTACATGATCAATTGTTTC
AATTCACTATAAGCTCTATCTGAAGTTCTGAACTGTATATGAATTCATGCTCACTAGCTTCCCTCTTCAGGTATTGAAGC
AGGAAATAGTCCCCACATTAATCTTAAGGTACCACAATGACATAATCATCGCTG----GTTGTTTTAGCGATAACACTAA
GTATCATAAGTCATTATCATATACTCCCTCCGTTTCAAATTACTCGTCGCTGAAATGGATGTATCTAGAACTAAAATACA
TCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGGAGGGAGTATGTATGTTTGTTGATTTCAGGGATATCTAGTA
GGCAACCCATCGACTGGTGAAAGCATCGATATAAGCTCTAAAGTGCCATATGCTCACGGAGTTGGTATAATATCAGATCA
ATTATATGAGGT-AACTAGACTCGAGCCTCCTCGCAGCTATGTATATAGTCCATTTTATCGCAATCAAAGGGGCCATTAA
TATGTTGTTTGCTGATGATATATGTAGACCATATTGGGGCATTGCCAAGGACAGGACTACATGTTTCCGACAAATGATTT
GTGCGCCCAAGCTCTGGATGATTTCAATCATGTAAGAAGAAGAAAGAAACATCTTATGCTAGAATTGACTTGACCGTTCG
CAATGCAATTTTTGCAGCTTTTGTCCGAAGTTCAGCAGGCCCAAATTTTGTTGGACACCTGCGTTTTTGCGTCCACTCCA
GCCCGGCCAGAAGCTGATAGTGGGACCGAGTACTCGGGTGGTGCTGGTAGGAGGATCCTAGTTGGAAATCCACCACCTCG
CCCTCCATTTGGATGTGTTGTAAGTAGTAATGTCTCCATTCCTCATGTAGTACAATGCGAGTTACTCCCTCCGTTCGTAA
TTACTTGTCGCAGAAATGGATGTATCTAGACGTATTTTAGTTTTAGATACATCTTTTTCCGAGACAAGTAATTCTGAACG
GAGGGAGTAGATAGTT-TTCATCGCTTTTAACAATTTATTGCTCCCTCTGTCACAAAATAACAAAGTTGAGTCACATTTT
TTGAA---------------------------------------------------------------------------
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-----------------------------------ACGGAGGGAGTAGTAATTAGCCAAGAAAAATGCAACTTA------
-----------------TACCCAATATTGTGT-AGACTTATGGG---TACTACCTATCGTATTTTTCCATCACTTTG-AC
AACTTACAAGTAATTACCCGAGAATAAAAGTA------------------------------------------------
----ACTTACTAGTGCTATGCATACCAATATTGTGGCAGACTTACAAGTACTACCTATCGTATTTCTGGGCAAACGCGGA
GGTGACCCGAAATGCTCTTGGGATCAAGGAGGGGAGCGTGGGGGAGTGGGTGAGGTGCCACAACGCCGATCTGCCCTACA
CAATCGACCTCAGGAGCAGCATTGAGTACCACCGGAACGTCACGGCCAATGGTGGCTACCGTGCGCTTGTATACAGCGGC
GACCATGACGCAGTGGTGCCGCACCTGGGGACACAGGCGTGGATCAGGTCACTTGGCTTCCCTGTCGCCCACCATTGGAG
GGCATGGCATCTCCATGGCCAGTCTGCTGGGTACCC--------ACACCATCGTTGCTAG----CTATTATCGCTATTTC
TTGCTTCATGCTTGCTGTATATCC-------TTGTTGATGCATGTATTTCTTGCAGGTTCACCTTAACTTACTCCAACAA
CATGACATTCGCAACCATCAAGGTAACACTTGCCTTCTTAATC-TGCCTGGATGCACAAGCTGGCTCTAATCAAGTTCCA
TTCGGTTGCTGCAGGGTGGCGGGCACACCGCGCCGGAGTACGAGCCCGAGAGGTGCTTCGCCATGTTCAGCCGATGGATA
CTCGACAAACAACTCTAG--------------------------------------------------------------
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>chr3D_1_TraesCS3D01G322700
CAAAAAATCTTCTACACTATACACTCCTACGTAAGTACATACAATATACATTCGCAAAAAGTACATACTGTGTGTGTGTG
TGTGTTTTGTGAATGAAGTACATACTATATAGGTATATCCTTTCACATCTACACAAGAAAATACAACCAATTATAGAGGC
ATTTGTTTCTAGTGTATGTATTAAACAAATGATCGGTTCAAATGGTATTGAAGTAAATTAACGGTATGCGTACAAGTGAA
AGACATAGAGAAAAGATGAAATTGGTGCATGTGGT---------------------------------------------
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---------------------------------------------------------ACATATATGTGAAAATGTGGAAC
GGTAGATTTCTATCTATGTAGAAAGAGACAAAAAAATGGAAAAGGCTAGGAAAAAAGTTTGAAAATGACCTTGGATGTAC
ACATGTGCCATACATATTTTCCCC-----CTTTCTTTCTTTCTTTCTTTC----------CTTGTATCGAC---TAGAAT
TTATGTATTAAATTAAGTTTACCGTGACTAG-------------------------------------------------
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----------------------TCGTGATTTTTTGTATTGCTTCATGCAAGACTTTGGGCCAGTTCTTTTGGTGGCTGCT
TATTTTAAAAGTAGGCTTTTAGAAAAATATTTTTGATTGGACTTCTAGAATAAGCTAGGTAGTGGGTAGTTTATTCGAAG
CCTGCAAAAGAAACTGACATGTAGTATTATAGATGATTGTATTTATTAGATTATAGCCTTATTTTACTTTAAGTTGCGTT
ATGTTACATTAACATATTATATGTACTTCAAACACCTCATGGAATGTGCTATGT--------------------------
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------------------CTGATTGGGATTCACCGAGCTGAGGGAAGCTGAATTTCGGTGATTAGATTCGTTTCCAAGCG
GCGGAAGTCGCCAGTCATCCTTCCGTGACACGTCTGGCTAAGAGGCATGACACGTGTGGTAGATCAAGGTGAGACCGGCA
TAAAATGTCCTCCGCCA------ACAGTTCCGGCAAAAACTATGCCAGCAGCTGATCCGCTGCCCGTGCTCTGCTCTGCT
CTGCTGCCGTTGCCGCCGCTAGTCCGAGTACGAGTACAGAGATGATCC---CGACGCGGCTGCTCTGCTGCTGCTACTTG
CTGTCGTTCATCTTCATCGCCGTCGCCCCGCGCACGACCGATTCCAAGCTGGTGACCAGCCTCCCCGGCTTCGACGGCCG
CCTCCCCTTCCGCCTCCACACTGGGTGG----GTACCTTCGTCTCCATCTCAAGCTCCACGAGCTAAGGTCTATCTACTT
CTTGGATTCCTATAAATCGACATGTCCATGAATGAATTGAATCGCAAGGTACGTGGAGGTGGACCCGGGCACGGAGCTCT
TCTACTACTTCGTCGAGTCGGAGGCCGGCGGCGAGGGCAACCCTTTCCTTCTCTGGCTCACCGGCGGCGACCGCTGCTCC
GCCTTCAGCGGCCTCGCCTACGAGATCGGTCTCTCTTTTCATTCAGTTA---ACTATCATTAATTGCGGGGTCGATCGCC
TCTACAGTCTCCATCTGCAACATGATCAC---ATCATTCATGTATAGTGCAGGTCCCGTCAGGTTCGTCCTGCAGCCCTA
CAATGGCAGCTTACCACGCCTGCACATCAACCCAAACTCATGGACAAAGGTCTTCCA----AGCTTCTCGTTCCATCTGA
ATATG------------------TATGTACGCATGCTACTTGC------ACGC---TAATACTAAGGTAATGTCCACCGG
CGCAGGTGGCACACATCTTGTTCGTCGATTCGCCGGTCGGTGCTGGATTTTCCTTTTCCAAGCAACCCAAGGGATACGAG
GTCGGGGATGTGTCCTCCTCGTTGCAGCTCCATAACTTCCTCATCAAGTGGTTCAGCGACCACCCCACATACCTGAAAAA
TCCTTTCTATATCGGTGGAGATTCCTATGCCGGAAAACTTGTGCCATATATCGCACACATCATTTCACAAGGTACATATA
-----TATATACCCCGTGCCCTGTTTGGCAACTCCATCTGTGTAAATCTGTGTGCAAACTAGTACATGATCAATTGTTTC
AATTCACTATAAGCTCTATCTGAAGTTCTGAACTGTATATGAATTCATGCTCACTAGCTTCCCTCTTCAGGTATTGAAGC
AGGAAATAGTCCCCACATTAATCTTAAGGTACCACAATGACATAATCATCGCTG----GTTGTTTTAGCGATAACACTAA
GTATCATAAGTCATTATCATATACTCCCTCCGTTTCAAATTACTCGTCGCTGAAATGGATGTATCTAGAACTAAAATACA
TCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGGAGGGAGTATGTATGTTTGTTGATTTCAGGGATATCTAGTA
GGCAACCCATCGACTGGTGAAAGCATCGATATAAGCTCTAAAGTGCCATATGCTCACGGAGTTGGTATAATATCAGATCA
ATTATATGAGGT-AACTAGACTCGAGCCTCCTCGCAGCTATGTATATAGTCCATTTTATCGCAATCAAAGGGGCCATTAA
TATGTTGTTTGCTGATGATATATGTAGACCATATTGGGGCATTGCCAAGGACAGGACTACATGTTTCCGACAAATGATTT
GTGCGCCCAAGCTCTGGATGATTTCAATCATGTAAGAAGAAGAAAGAAACATCTTATGCTAGAATTGACTTGACCGTTCG
CAATGCAATTTTTGCAGCTTTTGTCCGAAGTTCAGCAGGCCCAAATTTTGTTGGACACCTGCGTTTTTGCGTCCACTCCA
GCCCGGCCAGAAGCTGATAGTGGGACCGAGTACTCGGGTGGTGCTGGTAGGAGGATCCTAGTTGGAAATCCACCACCTCG
CCCTCCATTTGGATGTGTTGTAAGTAGTAATGTCTCCATTCCTCATGTAGTACAATGCGAGTTACTCCCTCCGTTCGTAA
TTACTTGTCGCAGAAATGGATGTATCTAGACGTATTTTAGTTTTAGATACATCTTTTTCCGAGACAAGTAATTCTGAACG
GAGGGAGTAGATAGTT-TTCATCGCTTTTAACAATTTATTGCTCCCTCTGTCACAAAATAACAAAGTTGAGTCACATTTT
TTGAA---------------------------------------------------------------------------
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-----------------------------------ACGGAGGGAGTAGTAATTAGCCAAGAAAAATGCAACTTA------
-----------------TACCCAATATTGTGT-AGACTTATGGG---TACTACCTATCGTATTTTTCCATCACTTTG-AC
AACTTACAAGTAATTACCCGAGAATAAAAGTA------------------------------------------------
----ACTTACTAGTGCTATGCATACCAATATTGTGGCAGACTTACAAGTACTACCTATCGTATTTCTGGGCAAACGCGGA
GGTGACCCGAAATGCTCTTGGGATCAAGGAGGGGAGCGTGGGGGAGTGGGTGAGGTGCCACAACGCCGATCTGCCCTACA
CAATCGACCTCAGGAGCAGCATTGAGTACCACCGGAACGTCACGGCCAATGGTGGCTACCGTGCGCTTGTATACAGCGGC
GACCATGACGCAGTGGTGCCGCACCTGGGGACACAGGCGTGGATCAGGTCACTTGGCTTCCCTGTCGCCCACCATTGGAG
GGCATGGCATCTCCATGGCCAGTCTGCTGGGTACCC--------ACACCATCGTTGCTAG----CTATTATCGCTATTTC
TTGCTTCATGCTTGCTGTATATCC-------TTGTTGATGCATGTATTTCTTGCAGGTTCACCTTAACTTACTCCAACAA
CATGACATTCGCAACCATCAAGGTAACACTTGCCTTCTTAATC-TGCCTGGATGCACAAGCTGGCTCTAATCAAGTTCCA
TTCGGTTGCTGCAGGGTGGCGGGCACACCGCGCCGGAGTACGAGCCCGAGAGGTGCTTCGCCATGTTCAGCCGATGGATA
CTCGACAAACAACTCTAGTACTCCTAACAGCCACGATCAAGTAGAGAAGGAGGCAAGCCAGACGATCAG-AGTATTGGGT
ACCTCCCCACTCCACTATTCAGTGGTTTCGCCTACATATCAACTATACTGCCTGGCAATATAGTTCGTACTAGAACATAT
AGGCGCGCGATGCCC--TCCGTCTATATTGGAGAAAAACACTTAATATATTTT----AGAAAATACGGATACTACAAATA
TCTTGTTAAGTATGGTACAGATATATGAGACAAAGAAAATTCTAAGAAGATACAATAAATCTGCATTTTGGTGCAGCAGA
CA--GATTTTACAAATGCAGGGTTCAGAGGGATCACACCGATGCTATTGCTATGTGTTAGGATTTAATTAATCCTATTAA
TCCATGCTTAAGGAATAGATCGCGGTTGCCATATGGAAACCGACGTTTTCCTAGCGCCTTCTGGAACAGACACCTTTTCA
CTTGGTGTCTTTTGTAACTCTATATATAGATGTATTCATCATCAATAAAGATTACCCCGATTCATTTGTTCGACTCTCTT
GTTCGTTTACAATCGATCCTTCACACTATGTACAAATTGTCGTCATGTTTACATACGCTACTGTTCAGAACTAAAGATAC
AGTGATCTCACATTAAATTAACACATGGCTATGGCTGTTGCTTTTCCAATTTCAATTAAATTGACATATGGTTATGGCCA
TTGCTTTTCCAATTTCAGTGCCGCCTCCTTGCACGCCATATTTAAATTGACACACGCGACCTTAGGTCGCATTAACGAGG
CCCCACGGCTTTCTTATTCAGATGAAAGAGCATTTTGTGTGTCAATTCCCTAAGGCCAACTCCACCGCGCCACCCTATCC
TGTCCGGCCCCGTTCGTTTGGGGTAAAAGGGACAAACGAAGCGGCCCAACGCGCGACGGCCCGGACCCATCTTATCCATT
TTGTGTCCGGACCGACTCATTTCGAGCGCAAACTTGCGCCGGGTTTGGGTCGCGGCGAACACCAAAC
>chr3B_85
--------------------------------------------------------------------------------
----TTTTGCAAACGAAATACATACTATATAGGTATGTCCTTTCACATCTACACAAGAAAATACAACCTATTATAGAGGC
GTTTGTTTCTAGTGTACGTATTCAATGAATTATCAGTTAAAATGGTATTGAAGTAAATTAATGGTATGCGTACAAGTGAA
AGG-ATAGAGGAAAGATGAAATTAGTGCATGTTTTTTTTTGAAACGGAGGCAAAAGATTTGTCTCATTGATTAATTAAGC
AGAAGAGAGTTGCCCGGTTAATTACTGGAAAACCGGGCGAAAACCAATACAAACCTACCACTCGAGGACTAACTCATAGA
GCAAGCAACCCCATAAGTGCATGATCAGCCCGACAACCCAAACATAACGACTACCAACCCCCACACAACAACATCGCAAA
GAACCATCCAACGAGAGAATCTCAGTCGAAGACCACGAGGACCACCAAGACCACCAAGACAAGCCACGCAATAAGGACAA
TCAAAAGACTGCCATCAAGCAGCTGCGGACGCCTTTCCTGTGGCGCCACTCTTCTTTCTTTGGTTTCTGATAGCCTCCTC
CACAATCGCCTTGCCAGATCCAGGGCTAGCCGCCTCTAAACGTTTGAGCAAACTGTGAATCTCTAACTCGAAGAGAATCT
CATCGACCTTTTCACGCACAGACATCACGTGCCCAACGGTCACGTGTGAGTTGGTGACCGGAACATCGGAACCTACGTCG
TCCACAAAGGCGAGCGACTGGCTGGGCTCCAAAGGGTCAGACGCCAACATACCGACCGCCTCAACATCATCAGCCACAGA
AACCACTGAGACGACAACATCGCCCACAGGAACCACTGACACAATTGCCTCAGGCACCTCCACTTGCTCACGTGACAGAG
GCGAAACATGCCCCTCACACAAGATCACTAATGAGTCCACCTCCAAGCGCTCCACAGACAAAGGCAAAACAGGGCTCAGA
CATAGCTCCTGTAGGTCGGGCATGATCTGTAGAACCGGAGACTCGAGCACGGCGCTGGGCTCGCCCTCAATGGTAGGCAG
CATAGGAGACAAGGTCGATAGTGACGATGTGTTGTCCCCAACACGAGGAGAGAAACATCCATATAGCTCTTGGCTTCCTT
CCTCCATGGTGGCAGCACCGGCCACACCAGGAGGGCATGACATCAGAGGGCATGACATCAGACTGGTTGACAACATAGCC
GTCCCTAAGGAGAGCTTGTCCAGAGCAGCCTCCGCCCTCTCCAGAAAGCTCCCAACCCGCGTCATCCAACCTTGCAGCTG
CGCGATTTGATCAGCCAGAACAGACTGCACATCAGGCTGGGTGGCCGAGCCACCGGTAGCAGAGACGACAGACGCCCAAG
ACCCATGACGAAACGCCTTGGATGGTAGCGCGGATTTCATTGAACTCTCACATGAAGCTTTAGCACTACGATGCACGATA
CCCATAATTGGTTGTACGGCAAGGCATGACAGCGAGCTTAGAGGACGCCATGGATTGCGACATCCACGTGCACGGTGACC
GTTCTCCAAGCAACGGGAGCACCGAAACAGATCTCTACACTCAGCCGCACGGTGCCCACGAACGAGGCATCTGCAGCACC
GGCCATGCATCCAGGCAGGGATGGGACGAGGAGCCATTGTCGGGGCTGGCAACATTGGGCTACGCGGACCACGCCGGGGC
AACACCTCTTTCCATCCCCCGCACGCCTCTGTTACACATCCCACACTCGGCTGGGCAGCGGTCAGGGCGACCGGGGCCGA
TGCCTTGGCAGCAAGCGGTGTCATAGGGGCCAACTCCTCTTCATTAGTGCATGTTGGACATATATGTGAAAGTGTGGAAC
CGTAAATTCCTATCTATGTAGAAAGAGACAAAAAAATGGAAAAGCTAGG--AAAAAGTTTGAAAATGACCTTCGATGTAC
A--TGTGCCATACACATTTTTTTCTCGTTCTTTCTTTCTTTCTTTCTTTCTTTTCTCTCTCTTGTATCGACTAGTAGAAT
TTATGTATTAAATTAAGTTTACCGTGATTAACTTGCTCCCTGAAGTCCAAACCCGACGAAAAGAGTAGTCATAGTACAGA
GACGATCCCCTGGCCTTCGCCTCGTGCGCTAACGCGAGGGCGATCAGGAACCACGCCTCCCGCTGGCGCCGCCGTAGATC
GGCTTCGTCTTCCGTGGTGTTAGGCATAGAAGTGCAGTGGATCTCGGCCTTGCCGGCGGAAGGGCTCATACATCATTTTT
AGATATTTTTTGTGTTTGTCTAGATTTGTGTTTTATTTAGGAAGACGATGCGGGGGTGGCTCTTTGAATTTGAAATAAGG
TTTTTTCCGTCTAAGCCCCGTTCTGGTGGTGCGTTTAGCATCATCAGAGGGCGTGTGGAGATTTGACTTCAACAGAGCTC
ACATGATTCGGTCGGCGTTTGTCTGGATCCACTTGAATGTGATCTTCGTTCGTACGTGTTCGTGTGTCTTCAGATTAGAT
CCTTCCGGTCTACGCTTCTCTTCATCGGCGGCTGTTGTTCTGGCGCGCTGGTCCTCTCGAGACTTAGCACAACGACTTTC
GACTGTTTACTATAACAAGGTTGGTCTGGCTCTAATGATGAAGGGACGATGATGGTGCTGTGCCTTCAGCTTGCTCCGGT
GATTGTAGTATTTGTTAGGTGGTTTGCGGATCTGGATGTAATTTTTACTTCTAGTGTTATTTGTACTGTCTTGACAATTG
ATGAATAGAGCGAAAATATTTCTCGTAATTTTTTTTACTTTCATTATGCTGCTCTCTTTTATGTCT--------------
--------------------------------------------------------------------------------
--------------TGAAATGTGCTATTATAGATAAGGCCATTATTATAGATGAGGTCAACCTATGGGTTACTGCAGGGG
CTAAACAATTAGGAAAAATTGTATTGCGCGAGTAATTGTCATGCCGTACTACGGTCTTGTCTAACTCTAAAACTCTATCC
TTCTCTATTTTAATAGATGAGGCAAAAATTTTGCTTCCGTTTCGGAAAAAAAAGTTCTATGTTACTAAGTTACTCCCACT
ATGCGCGGAGGCGTGGCACTGATTGGGATTCACCGAGCTGACGTGA--TGAGTTTCGGTGATTAGATTCGTTTCCAAGCG
GCGGATGTTGCCAGTCGTCCTGCCGTGACACGTCTGGCTAAGGGGCATGACACGTGTGGTAGAGC-AGTTGAGACCGGCA
GAAAATCTCCTCCGCCTT--TAGACAGTTCCGGCCAAAACTATGCCAGCAGTTGATCCGCTGCCCGTGCTCTGCTCTGCT
CTGCCGCCGTTGCCGCCGCTAGTCCGAGTACGAGTACAGAGATGATCC---CGACGCGGCTGCTCTGCTGCTGCTACTTG
CTGTGGTTCATCTTCATCGCCGTCGCCCCGCGCACGATCGATTCCAAGCTGGTGACCACCCTCCCTGGCTTCGACGGCCG
CCTCCCCTTCCGCCTCCACACTGGGTGG----GTACCTTCGTCTCCATCTCAATCTCCACGAGCTAAAGTCTATCTACTT
CTTGCATTCTTATAAATCGACATGTCCATGAATGAATTGAATCGCAAGGTACGTGGAGGTGGACCAGGGCACGGAACTCT
TCTACTACTTTGTCGAGTCGGAGGCCGGCGGCGAGGGGGACCCTTTCCTTCTCTGGCTCACCGGCGGCGACCACTGCTCC
GTCTTCAGCGGGCTCGCCTACGAGATCGGTCTCTCTTTTCATCCAATCAACTACTATTACTGATTGCGGGGCCGTC----
-------TCTCCATCTGCAGCATGATCATATTATCATTCATGTATAGTACAGGTCCCATCAGGTTCGTCCTGGAGCCCTA
CAATGGCAGCTTACCACGCCTGCACATCAATCCAAACTCATGGACAAAGGTCTTCCTAGCCAGCTTCTTGTTCCATCTGA
AGCAGCTCGCTGCCTGTAATGTATATGTACGCATGCTGCTTGCGCTTGCACCCTAATAGTACCAAGGGAATGT-------
-GCAGGTGGCACACATCCTGTTCGTCGACTCACCGGTGGGTGCTGGATTTTCCTTTTCCAAGCAACCCAAGGGGTACGAG
GTCGGGGATGTGTCCTCCTCATTGCAGCTCCATGACTTCCTCATCAAGTGGTTCAGCGACCACCCCAAATACCTGAAAAA
TCCTTTCTATATCGGTGGAGATTCCTATGCTGGAAAACTTGTGCCATATATCGTGCACATCATTTCACAAGGTAC--ATT
TATAGTATATACCATGTGCCCTGTTTTGCAAGTCCATCTGCGTAAATCTGTGTGCAAACTAGTA--TGATCAATTGTTTC
AATTCATTATAAGCTCTATCTGAAGTTCTGAACTGTATATGAATTCATGCTCACTAGCTTCCCTCTTCAGGTATTGAAGC
AGGAAATAGTCCCCGCATTAATCTTAAGGTACCATAATGACATAATCATTACTACTTAGTTGTTTTAGCGATAACAGTAA
GTATCATAAATGATTATTATA-----------------------------------------------------------
----------------------------------------------TATGTATGTCTATTGATTTCAGGGATATCTAGTA
GGTAACCCGTCGACTGGTGAAAGCATCGATATAAGCTCTAAAGTGCCATATGCTCACGGAGTTGGTATAATATCAGATCA
ATTATACGAGGT-AACTAGACTCGAGCCTCCTTGCAGCCATGTATATAGTCCATTCTATCGCGATCAGGGTGGGCATTAA
TACGTTCTTTGTTGATAATATATGTAGACCATATTGGGGCATTGCCAAGGACAGGACTACATGTTTCCAACAAATGATTT
GTGCGCCCAAGCTCTGGATGATTTCAATCATGTAAGAAGAACAAAGAAACATCTTATGGTAGAATTGATTTGACTGTTCG
CCATGCGA-TTTTGCAGCTTTTGTCCGAAGTTCAGCAGGCCCAAATTTTGTTGGACACCTGCGTTTTTGCGTCCGTTCCA
GCCCGACCAGAAGCTGATAGTGGGACCGAGTACTCGGGTGGCTCTGGTAGGAGGATCCTAGTTGGAAATCCGCCACCTCG
CCCTCCATTTGGATGTATCGTAAGTAGCAATGTCTCCATTCTTCATGCAGTACAATGCAAGTTA----------------
--------------------------------------------------------------------------------
---------GATAGCCGTCCATCGCTTTTAACAATTTATTACTATATAATACTCCCTCCGTTCCTAAATATTTGTCTTTC
TAGAGATTTCAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCATATG
TGGTAGTCCATTTGAAATCTCTAAAAAGACAAATATTTAGGAACGGAGGGAGTATAAAACTTTATTACAACTAATGTACT
AATATATTAGTTGCAATAACATCTTATATTATGGGATGAAGCGAGTAGTACTTAGCTAAGGAAAAAGCAACTTAATAGTG
CCCTATGTAGAACAAACTAACCAATATTGTGGCAGACTTATGGGTAATACTGCCTATTGTATTTTTCCATCGCTTTTAAC
AACTTATAAGTACTTAAACGAGAATAAAAGTAGGGAAAGTTGTGGTGAAGCTCAGGCTCCAAAAAAACACTCTCTTTAAA
AGTAACTTATTAGTGCTATATATACCAATATTGTGGCAGACCTATGGGTACTACCTATCGTATTTCTGGGCAAATGCGGA
GGTGGCCCGAAATGCTCTTGGGATCAAGGAGGGGAGCGTGGAGGAGTGGGTGAGGTGCCACAACGGCGATCTGCCCTACA
CAATCGACCTCAGGAGCAGCATTGAGTACCACCGGAACGTCACGGCCAATGGTGGCTACCGTGCGCTTGTATACAGCGGC
GACCATGACGCGATGGTGCCGCACCTGGGGACACAGGCGTGGATAAGGTCACTTGGCTTCCCCATCGCCCACCATTGGAG
GGCGTGGCATCTCCATGGCCAGTCTGCTGGGTACCCCCACACGCACATCATTGTTGCTAG----CTA------CTACTAC
TTGCTTCACGCTTACTGCATATTC-------TTGTTGATGCATGTATTTGTTGCAGGTTCACCTTAACTTACTCCAACAA
CATGACATTCGCAACCATTAAGGTAACACTTGCCTTCTTAATC-TGCCTGGATGCACAAGCTGGTGCTGATCAAGTTCCA
TTCGGTTGATGCAGGGCGGCGGGCACACCGCGCCGGAGTACGAGCCCGAGAGGTGCTTCGCCATGTTTAGCCGATGGATA
CTCGGCGAACCACTCTAGTACTCCTAACAGCAACGACCAAGTAGAGAAGGGGGAAAGC----------------------
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>chr3A_744
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------------------CTGATTGGAATTCACCGAGCTAACGTGA--TGAGTTTCGGTGATCAGATTCGTTTCCAAGCG
GCGGATGTTGCCAGTCGTCCTGCCGTGACACGTCTGGATAAGAGGCATGACACGTGTGGTAGAGC-AGTTGAGACCGGCA
GAAAATCTCCAACACCTCTCTAGACAGTTCCGGCCAAAACTATGCCAGCAGTTGATCCGC---------TCTGCTCTGCT
CTGCCGCCGTTGCCGCCGCTAGTCCGAGTACGAGCACTGAGATGATCCCGACGACGCGGCTGCTCAGCTGCTGCTACTTG
CTGTCGTTCATCTTCATCGCCGTCGCCCCGCGTGCGATCGATTCCAAGCTGGTGACCAGCCTCCCCGGCTTCGACGGCCG
CCTCCCCTTCCGCCTCCACACTGGGTGTGTGTGTACCCTCATCCCCATCTCAATCTCCATGAGCCAAGTCTACTTCCTCC
GTTGGATTCT--TAAGTCGACATGTCCATGAATGAATTGAATCGCAAGGTACGTGGAGGTGGACCAGGGCACGGAGCTCT
TCTACTACTTCGTCGAGTCGGAGGCCGGCGGCGAGGGGGTACCTTTCCTTCTCTGGCTCACCGGCGGCGACCGCTGCTCC
GCCTTCAGCGGCCTCGCCTACGAGATCGGTCTCTCTTTTGATTCAATCAACTAGAATTGCTGACTGCTGGGTCGTC----
-------TCTCCGTCTGCAGCATGATCAC---ATCATTCATGTATAGTGCAGGTCCCGTCAGGTTCGTCCTGGAGCCCTA
CAATGGCAGCTTACCACGCCTGCACATCAACCCAAACTCATGGACAAAGGTCTTCCTAGCCAGCTTCTTCTTCCATCTGA
AGCAGCTCGCTGCCTGTAATGTATCTGTACGCATGCTGCTTGC------ACCCTGACAGTACCAAGGGAATGT-------
-GCAGGTGGCACACATCCTGTTCGTCGATTCGCCGGTCGGTGCTGGATTTTCCTTTGCCAAGCAACCCAAGGGGTACGAG
GTCGGGGATGTGTCCTCCTCATTGCAGCTCCATGACTTCCTCATCAAGTGGTTCAGCGACCACCCCAAATACCTGAAAAA
TCCTTTCTATATCGGTGGAGATTCCTATGCCGGAAAACTTGTGCCATATATCGCACACATCATTTCACAAGGTAC--ATA
-----TATATACCCTACGCCCTGTTTGGCAACTCCATCTGCGTCAATCTGTGTGCAAACTAGTA--TCATCAACTGTTTC
AATTCACTATAAGCTCTATCTCAAGTTCTGAACTGCATATGAATTCATGCTCACTAGCTTCCCTCTTCAGGTATTGAAGC
AGGAAATAGTCCCCGCATTAATCTTAAGGTACCATAATGACATAATCATTACTACTTAGTTGTTTTAGCGATAACAGTAA
GTATCATAAATCATTATCATA-----------------------------------------------------------
----------------------------------------------TATGTATGTTTGTTGATTTCAGGGATATCTAGTA
GGCAACCCATCGACTGGTGAAAGCATCGATATAAGCTCTAAAGTGCCATATGCTCACGGAGTTGGTATAATATCAGATCA
GTTGTATGAGGTAAACTAGACTCGAGCCTAATATCAGCCATGTATATACTCCATTTTATCGCAATCGAAGTGGCCATTAA
TATTTTCTTTGCTGATAATATATGTAGACCATATTGGGCCATTGCCAAGGACAGGACTACATGTTCCCGACAAATGATTT
GTGCGCCCAAGCTCTGGATGATTTCAATCATGTAAGAAGAAGAAAGAAACATCTTATGCTAGAATTGACTTGACCGTTCG
CAATGCAACTTTTGCAGCTTTTGTCCGAAGTTCAGCAGGCCCAGATTTTGCTGGACACCTGCGTTTTTGCGTCCACTCCA
GCCCGGCCAGAAGCTGATAGTGGGACCGAGTACTCGGGTGGCGCTGGTAGGAGGATCCTAGTTGGAAATCCGCCACCTCG
CCCTCCATTTGGATGTGTTGTAAGTAGTAATGTCTCCATTCCTCATGTAGTACAATGCGAGTTA----------------
--------------------------------------------------------------------------------
---------GATAGTT-TCCATCGCTTTTAACAATTTATTACTCCCTCTGTCCCATAATATAAGAACGTTTTTGACAGTA
TGCTAGTGCCAAAAACGT--------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TCTTATATTTTGGGACGGAGGGAGTAGTACTTAGCCAAGAAAAATGCAACTTA------
-----------------TAGCCAATATTGTGT-AGACTTATGGG---TACTACCTACCGTATTTTTCCATCACTTTG-AC
AACTTACAAGTACATACCCGAGAATAAAAGTA------------------------------------------------
----ACTTATCAGTGCTATGTATACCAATATTGTGGCAGACTTATGGGTACTACCTATCGTATTTCTGGGCAAACGCGGA
GGTGACCCGAAATGCTCTTGGGATCAAGGAGGGGAGCGTGGAGGAGTGGGTGAGGTGCCACAACGGCGATCTGCCCTACA
CAATCGACCTCAGGAGCAGCATTGAGTACCACCGGAACGTCACGGCCAATGGTGGCTACCGTGCGCTTGTATACAGCGGC
GACCATGACGCATTGGTGCCGCACCTGGGGACACAGGCGTGGATCAGGTCACTTGGCTTCCCCGTGGCACACCATTGGAG
GGCGTGGCATCTCCATGGCCAGTCTGCTGGGTACC---------ACACCATCGTTGCCTCGCTACTA------CTACTTC
TTACTTCACGCTGACTGTATTCTGCTTATTGTTGTCGATGCATGTATTTCTTGCAGGTTCACCTTAACTTACTCCAACAA
CATGACATTCACAACCATTAAGGTAACACTTGCGTTCTTTTTTTTGCCTGGATACACAAACTGGTTCTGATCAAGTTCGA
TTCGGTTGCTGCAGGGCGGCGGGCACACCGCGCCGGAGTACGAGCCCGAGAGGTGCTTCGCCATGTTCAGCCGATGGATA
CTCGGCGAACCACTCTAGTACTCCTAACAGCAACAACCAAGTAGAGAAGGGGGCAAGCCTCACGATTTCAAGTATTGGGT
ACCTCTCCACTCCACTAATCAATGGTTTCGCCTACATATGAACTATACTGCCTGGCAGTGTAGTTCGTACTAGAACATAT
AGGCGTCTGATGCCGCGTCCGTCTATATTGGAGAAAAACACTTAACATATTTTAGAAAGAAAATACGGATACTACAAATA
TCTTGTTAAGTATGGTATAGATATATGCGACAAGGAAAATTCTAGGAAGATACAATAAATCTGCATTTTGGTGCAGCAGA
CAAAGATTTTACAAATGCAAGGTTCGGAGGGATCACACTGATGCTATTGCTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TACAAATTGTCGTCATGTTTACATACGCTACTGTTCAGAACTAAAGATAC
AGTGATCTCACATTAAATTAACACATGGCTATGGCTGTTGCTTTTCCAATTTCAATTAAATTGGCATATGGTTATGGCCA
TTGCTTTTCCAATTTCAGTGCCGCCTCCTTGCACGCCATATTTAAATTGACACACGCGACTTTAGGTCGCGTTAACGAGG
CCCCACGGCTTTCTTATTCAGATGAAAGAGCATTTTGTCTGTCAATTTACTAAG--------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----SS--S---S------------------S-------------------------------S-----------
S---------------S-----S--SS---S---S---S----------------------S------------------
--SS------S------------S--------SS----------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------S--------
S---S---S-----------------------------------SSSS-SS---------------------S-------
-SS-----------S-----SSS---------------------------------------------------------
---------------------------S--S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-------S--S-SSSSSSSSSSS-SSS-SSSSSSS--SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---S----SS----------S-SSSS---SS-SSSSS-SSS-S-SSSS-S-SSS---SSSSSS-SS
S-SSSSS----SS-S-SSS-S-S-SSSS-S-SS-SS-SSSSSSSS--S---S-S--------------------------
--------------------------------------------------------------------------------
-----------------------------------------S-SS-SS---S----------------------------
-----S--S-------S----S-----------------------------------------S-S--S-----------
S-----S---------S-----------------S----------------S----------------------------
----S---------------------------------------------------------------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------S--------------------------
---------S-------------------------------------------------------S--------------
-------------------------------------SS-----------------------------------------
---------------------------------------------S-S---------S-S-S------------SSSSSS
SSSSSSS------------S----------------------------------------------------S-------
--------------------------------------------------------S-----------S-----------
-SSS---------------------------------S-------------S------S---S----S-----SSSSSSS
S----------------S-------------------------------------------------------S------
--------------------S------------S---------------------------------S------------
---------------------------------------------------------------------------SS---
--------------S-------------------------S-----------------------SS--------------
--------------------------------------------------------------------------------
--------------S-------------------S--------------SS--S----------------------S---
---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----S-------------------------------S---------
------S---------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-----------------------------------------S-----------------------------S--------
----------------------------------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---------S---------------------S-----------S--S----SS-S-SSSS-S-SSSS---S
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
-------------------S------------------------------------------------------------
------------S-------------------------------------------------------------------
---------S----------S-----------------------SSS---------------------------------
-----------------------------------------S-----------------------S--------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------S-----------------
---S---------------------------------------------------------------SSSSSS---S---
--------S----S--------S---------------------------------------------------------
------------------S---------------------------------------------S---S-----------
----------------S---------------------------------------------------------------
----S-S---S--------------------S----S-------------S--------SS-----SSS-----------
-----S-----------S---S-----------------S-----------------S-S--------------------
-----SSS------S------------------------------S----------------------------------
-----------------S---------S-----S----------S-----------------------------------
-------------------S-----S------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------
---------------------------------------------------------------S----------------
------------------------------------------------------------S---------S---------
--------------------------------------S--------SS-----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2879
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-----------------------------------------------------------CCAGTTCTTTTGGTGGCTGC-
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>reverse_4752
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-------------------------------TCGGAACGGAGGGAGTATGT-----------------------------
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>forward_3361
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-------------------------------------------------------------GATCAAGGTGAGACCGGCA
T-------------------------------------------------------------------------------
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>reverse_4753
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--------------------------------CGGAACGGAGGGAGTATGTA----------------------------
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>forward_4234
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------------------------------------------------------TTTCCAAGCAACCCAAGGGA------
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>reverse_6066
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-----------------------------------------------------------------CCGATCTGCCCTACA
CAATCG--------------------------------------------------------------------------
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>forward_5357
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---------------------------------------------------------CGAGTTACTCCCTCCGTTCG---
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>reverse_7523
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--GTGTCCGGACCGACTCATTT---------------------------------------------
