>input_sequence_28340
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---------------------------------------------------------------------ATGGGAGCCGG
CCAGGACCTGGAGGCCGGCTACGGCGACGGCGGCGAGAAGAAGATGGCCCACTCCTCCTCCTCCTCGGGCCCGCTCCCGC
CGTCGGAGCCGCCGCACCTGCGGGGCCAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGTCGGCTTCCCCCAGCCCGCCCCGCCCCCCGGCTTCTCCGCCGGAGGCTAC------CAGCAGCAGAAGCAGCCCTAC
GCGCCCGCCGATCCGTACTACGCGCAGGGGTACCAAGCCGCCCCAGGTACAA----TTCCCCACATCCTCTTGCTTACCT
CCGATGCTTATGTTTGGTCCGGGATACGATAAGCTCGTGTAAATTGAGGTTTCTGTGGGGCACAAGGCCGTGCCAGTGAT
ATGGTCCCTGATGATGCACAATCTCACGGTTGCCTGT--GCACGATCACAACTCGGAATTCTTTGATCCAAAATTCGTGC
-GCATGATCCAAATCCCAGCACTCACCTTTTACTTTGTCGGGTAC--TCCAGCGACGAATTCTAGTTGTGAATAGACCCT
AGGCTTC-------AGCTTAACTAT---AATACATCAACTCACCACATGGATTCG-------ACGGGCTACTGTTGTTTA
AACTGGAACAGAACACTACATAGTTCCGTAATCCATGCTCCTTTAGGCTAGCAAGTCTTGATTAGTATTTGCGGCAACAA
TTGCGGACCGGATTGTCACATCGATAAAGAC----------------------------ATATAATTCAACAAATTCTTA
GTGTGCTGAATTCACTAGCCAGATATAATGTTTGGAAGTTTATTGCAGTTCTTCTGTCGGTCACCTTATACTTCTAGAAA
CAATCAAGATAAATAACTTCAGATCCTATTTCGCATCAATTTCTGGGGAAAACAGATAGGTGCATAGACTCGCACAAGAA
AAAACAAATGGACCCCCAAGACTGATTTTTTTTCCCGTTAAACACGAGCCTCGCTCCTGGTTCCATCTTTCATAGAAAAA
CGAAACCAACATACAGCGTCAGGTTTTAAGGTTCACAGACGAGCTAAGCTCACAAATGCAAAGACAACTCCTACCCCTCA
CCAACACGGCAAAGGGCAAACCTAGAGCAATTGCCAAAGGACCTTACAGCAAGAACAGAAATACTCCA------------
------------------------------------------TTTCGCTCTAGTTATACTCTCAACACATGGATTCCATC
GCTGCATCAACGGTTCTTCATCAGGTACTCCAGCGTAGTAGCTCCCCAATGATCTGCATCACCCACTGCAGCTGCCCAGG
AAGAGTCCATCATACTCTCTGCGCAGATCAGTCTTGCTCCAGCTCCCGTGGCGACCTCAGTTTCCTGAGTAGCAGATCCC
TGGACAGGGCTGCATCCCCCCAAGAATCTCCTTGAGAGGTTTTGCCCAGTCTACTAGATAACCCACTATCAAATGCCCAG
CCTGTTTCACAGAAATCCAGTTTTTT-CTGTTAAATACTAAGGCATTTCTGCAAATCCAAAGTCCACACAGAACTGCAGA
AGAAACTATGTTTAAGAGCATGAACTTTTTGTTCCATAGACAA-GAGCAGCAAGTGACTTAAAATCAACAATATCAACCT
TTGAAAATTTGTTTAACATCACTTCATATAGCTCTAGCAATGATGCACTCAAAAAACAGGTGATA--------TACTGAT
TCAGTCTCAGTACAGTGAATACACTCCAGAGGTTTGGCTAGGCCTCTTTTCCTAAATCCGAAGATTGTCACAACACTGAA
AAATATACATCCATGTTATACAATAGTCCTGTTTCTGGTGCCTCAGGTTATGGTCCTGTTGTTCAAGGTAGGCCTGTTGA
AGGAAGACCCGTGAGAATGCGGCGCCTTCCATGCTGTGGGCTCGGCATGGGCTGGCTTCTGTGAGTGCCTCCCAATACGC
TTGCTATTTTTCCTTACTTTCTGAAGTTAAACCAGTCCCTCATAAAGTTCTGTTCTCTTGCTCGAACAAAGGTTCATTGC
CGGCTTCTTCTTGGCTGCCATTCCGTGGTATATTGGTGC-TTTCATCCTAATCTGTGTCCGGGTACATGACCACAGAGAG
AAACCAGGATATGTTGCCTGCACTATTGCTGTAAGTTACCTTTCTGATAAGACCGCAATACTATGCTGCTGTTAAGATTT
CACTT-AGGAATTCGAGACTGTGAG--CTTTATGGTCCGTTCAACCAGTTTTGTTACATTAACTGA---AATAAATTAGC
TCAAAAGAATATA----------CTCAGGTGCTGCTTA------CAGTTAATTTTTCTTGTGATAGCAGCAACTAAAATA
TTGGTATGGCCGAATTGAAAAAAAAACTCTTATCAAAATGGAAGTAGATTTTTACCGTACAAATTTAGCAATTGCAAGCA
ACATGGAAATCATTAGAATCACAAATTACAAGGTATAACCTGTCACAGTAAATTATTTTCTGTAATACTTGGCCTAACTT
TGCATTGGAATTCACTGCATTGCACAAACAGGCTATAATTGCGGCCATTGTTATACCCCTTGGAGTAACAAAAGGAACAG
ACTCATGGTGA---------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G399600
GTCCATGCCTTCTTTCTTCACAAGATTAATTGCTTCTATACATCTAGACTCAACCTGAATGGGGAGATTACTCCATTGCA
ATGCCAACGACAAACCTAGATGAGACCTCTGCTTCCAAAGCATCAGCACAATGATGGAGGCATCTGCATAAAGAAAATAT
TATCTCTCCCACATGGTCTCGAAGGATCATACCACTACGAGTCAAGCCATTGAGCAGCCCGTATTAATCTTAAGACAGTT
GGCCTCAGGAACCTTCCATGACGGCACCCCGCCCATGCACAATCTTCTCCCTCGGAACAGAATGAAACAACCTTAATCCT
AGAGCTAACCGAGATGGAAGGGCATTTACACATCCTAGGGGTAGAAAACACCCCCGAGCAGCTCATCGGTGGTAACATTT
GAGCTCTCGTCACTCATAACGGCACTAGTGTTGTGTGTGTTTTTACCAGTGACGGCTCCGTAGTATTGCTTATATCGAAG
GTTGACTCTAGACTCATCGGTGATAACAATTTTCTAAAAAAAAATTGAAATGTGATAACAATTTTCTAGGTTCTATTAGA
ACAGCAGATTTCCTTTTTTTTTAATCAGAACAACAGTTTTCAAGGTTCTTTTTTGAGGGACAACAGTTTTCTACGGTTTT
TCAAATTGAGGTGCTCAACAGTTTTATAGTTGGTGAGAAGTAGCTTTTTTTTTTTTGAGAATTGGTGAGAAGTAGCTGAG
ATGGGCTGCATCTGTCCATGAAGAGAAAAGCTCATGAACCATACCCAGACATCCGCCAGGCCCAGGCCCTTAACAACGGG
CCAGCAATTCTACCAGCCCGCGCACAACCAC----CAGTCCACCACCGACCGACCTAGTACATCAC--------------
-------ATCACACTGCCGTGCCGTGCCGTTGGCCCCTTCCCTCTGTGTCACCGCCAGCTTCCACGCACCTCGTCGGCAC
GGAACACCGCCCCCCGAGTCAAGGGTCAACCCACCCACCCACCCACCGATCTCCGTCCGTCC----ACCATGGGAGCCGG
CCAGGACCTGGAGGCCGGCTACGGCGACGGCGGCGAGAAGAAGATGGCCCACTCCTCCTCCTCCTCGGGCCCGCTCCCGC
CGTCGGAGCCGCCGCACCTGCGGGGCCAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGTCGGCTTCCCCCAGCCCGCCCCGCCCCCCGGCTTCTCCGCCGGAGGCTAC------CAGCAGCAGAAGCAGCCCTAC
GCGCCCGCCGATCCGTACTACGCGCAGGGGTACCAAGCCGCCCCAGGTACAA----TTCCCCACATCCTCTTGCTTACCT
CCGATGCTTATGTTTGGTCCGGGATACGATAAGCTCGTGTAAATTGAGGTTTCTGTGGGGCACAAGGCCGTGCCAGTGAT
ATGGTCCCTGATGATGCACAATCTCACGGTTGCCTGT--GCACGATCACAACTCGGAATTCTTTGATCCAAAATTCGTGC
-GCATGATCCAAATCCCAGCACTCACCTTTTACTTTGTCGGGTAC--TCCAGCGACGAATTCTAGTTGTGAATAGACCCT
AGGCTTC-------AGCTTAACTAT---AATACATCAACTCACCACATGGATTCG-------ACGGGCTACTGTTGTTTA
AACTGGAACAGAACACTACATAGTTCCGTAATCCATGCTCCTTTAGGCTAGCAAGTCTTGATTAGTATTTGCGGCAACAA
TTGCGGACCGGATTGTCACATCGATAAAGAC----------------------------ATATAATTCAACAAATTCTTA
GTGTGCTGAATTCACTAGCCAGATATAATGTTTGGAAGTTTATTGCAGTTCTTCTGTCGGTCACCTTATACTTCTAGAAA
CAATCAAGATAAATAACTTCAGATCCTATTTCGCATCAATTTCTGGGGAAAACAGATAGGTGCATAGACTCGCACAAGAA
AAAACAAATGGACCCCCAAGACTGATTTTTTTTCCCGTTAAACACGAGCCTCGCTCCTGGTTCCATCTTTCATAGAAAAA
CGAAACCAACATACAGCGTCAGGTTTTAAGGTTCACAGACGAGCTAAGCTCACAAATGCAAAGACAACTCCTACCCCTCA
CCAACACGGCAAAGGGCAAACCTAGAGCAATTGCCAAAGGACCTTACAGCAAGAACAGAAATACTCCA------------
------------------------------------------TTTCGCTCTAGTTATACTCTCAACACATGGATTCCATC
GCTGCATCAACGGTTCTTCATCAGGTACTCCAGCGTAGTAGCTCCCCAATGATCTGCATCACCCACTGCAGCTGCCCAGG
AAGAGTCCATCATACTCTCTGCGCAGATCAGTCTTGCTCCAGCTCCCGTGGCGACCTCAGTTTCCTGAGTAGCAGATCCC
TGGACAGGGCTGCATCCCCCCAAGAATCTCCTTGAGAGGTTTTGCCCAGTCTACTAGATAACCCACTATCAAATGCCCAG
CCTGTTTCACAGAAATCCAGTTTTTT-CTGTTAAATACTAAGGCATTTCTGCAAATCCAAAGTCCACACAGAACTGCAGA
AGAAACTATGTTTAAGAGCATGAACTTTTTGTTCCATAGACAA-GAGCAGCAAGTGACTTAAAATCAACAATATCAACCT
TTGAAAATTTGTTTAACATCACTTCATATAGCTCTAGCAATGATGCACTCAAAAAACAGGTGATA--------TACTGAT
TCAGTCTCAGTACAGTGAATACACTCCAGAGGTTTGGCTAGGCCTCTTTTCCTAAATCCGAAGATTGTCACAACACTGAA
AAATATACATCCATGTTATACAATAGTCCTGTTTCTGGTGCCTCAGGTTATGGTCCTGTTGTTCAAGGTAGGCCTGTTGA
AGGAAGACCCGTGAGAATGCGGCGCCTTCCATGCTGTGGGCTCGGCATGGGCTGGCTTCTGTGAGTGCCTCCCAATACGC
TTGCTATTTTTCCTTACTTTCTGAAGTTAAACCAGTCCCTCATAAAGTTCTGTTCTCTTGCTCGAACAAAGGTTCATTGC
CGGCTTCTTCTTGGCTGCCATTCCGTGGTATATTGGTGC-TTTCATCCTAATCTGTGTCCGGGTACATGACCACAGAGAG
AAACCAGGATATGTTGCCTGCACTATTGCTGTAAGTTACCTTTCTGATAAGACCGCAATACTATGCTGCTGTTAAGATTT
CACTT-AGGAATTCGAGACTGTGAG--CTTTATGGTCCGTTCAACCAGTTTTGTTACATTAACTGA---AATAAATTAGC
TCAAAAGAATATA----------CTCAGGTGCTGCTTA------CAGTTAATTTTTCTTGTGATAGCAGCAACTAAAATA
TTGGTATGGCCGAATTGAAAAAAAAACTCTTATCAAAATGGAAGTAGATTTTTACCGTACAAATTTAGCAATTGCAAGCA
ACATGGAAATCATTAGAATCACAAATTACAAGGTATAACCTGTCACAGTAAATTATTTTCTGTAATACTTGGCCTAACTT
TGCATTGGAATTCACTGCATTGCACAAACAGGCTATAATTGCGGCCATTGTTATACCCCTTGGAGTAACAAAAGGAACAG
ACTCATGGTGAGCCACCACCAGCTCTTGGCAGGCGGTTCTGTTGCTGAATATAAACATCGTTATTTCTGGACTAATTACA
TGATAGGTTATTACAAAGTCTGCTGGTTGTATTTCATGTATGAGTGTGTCTTGTATACATATATGTACAGTAAAAAGAGT
GGGGCTGCATCTTCGATGTTCTCTTGTATCGATACTTGATACTTATAGTGTGTAATAAAAGCTCGAATGTACAACACATA
TCTTTCTCGAGGTTACCTCTCGTTCAAATTCAGTACTACAAGGTACACGCTGCAGCATTCTACAATGGATTCCTTTGCAA
TACCTGCAGTAACTTAATGTTGAAATTTGATGTATCACTCGACAATTGTTACCCCTCCTTGGAGTAACATAAAGGGAACA
GACTCGTGGTGAACTGCAACCAGGTCTTGGCAGTGGTTATGTTGATGAATATAAGTGGTGGTTATTTCAGTTCCTGCATC
GACGGTCGATGTCCTCTTGTACCTATATTTGATACATACTGCATCGATGATGTGATGTCCCTTGTATCAAGATTTCGGGT
TTCTTCTTTGTAATAAAGCTCAAGTGTTTTCAACACATATTTTATATGAGGTTACATCTGTGTCAACTGTCAAGTTCAGC
ACTTTCATATGGTATCTC--------------------------------AAGCAAGTTTCATTTCTCATTATCATAAGG
AGTATAGGCGATATTTACCATCTGAATCAGAACCTATATTGCCCACATCAATTTGTTAGTTTATGTTCCAGCTTGACAAT
TTGTTTGTCGAAAGCAGTGATGTTGTTAGTTTAAATGAATCAAACCCTGCTGCCCATGAAATCTGTTACACTTTAGGTCC
TGGCCATGTGTTGGCATGAAGAACCTCCAGATGATTATCATTCGAGTTGTATACTCCCTCCGTAAAGAAATATAAGAGCA
TTTAGATCACTACTTTAGTGATCTACACACTCTTATATTTGTTTACAGAGGGAGTAGGCGCCCCAAAATATAAGAACGTT
TTT
>chr1B_780
GCCCAGGCCGTC--------------------------------------------------------------------
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-----------------------------------------------------------------------AACAACGGG
CCACCAATTCTACCGGCCCGCGCGCAACCACCAGTCAGTCCACCACCGACCCAAGCGGATCCACGTCCCTTGCCCCTGGC
TACATCAATCACACTGCCGTGCCGT-----TGGCCCCTTCCCTCTCTGTCACCGCCAGCTTCCACACACCTCGTCGGCAC
GGAACACCGCCCCCCGAGTCAAGGGTCA----ACCCACCCACCCACCGATCTCCGTCCGTCCGTCGACCATGGGAGCCGG
CCAGGACCTGGAGGCCGGCGCCGGCGACGGCGGCGAGAAGGGGATGGCCCACTCCTCCTCC---TCCGGCCCGCTCCCGC
CGTCGGAGCCGCCGCACCTGCGGGGCCAGGACCCCGCCCAGTACCAGTACGGCACCTTCCACCCCCCTGCCCCCCACCCC
GACGTCCGCCCCCACCCGCCC-----------------------------------------------------------
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--GTCGGCTTCCCCCAGCCCGCCCCGCCCCCCGGCTTC---------------------CAGCAGCAGCAGCAGCCCTAC
GCGCCCGCCGACCCCTACTACGCGCAGGGGTACCAGGCCGCCCCAGGTACAAACAATTCCTCGCATACTCTTGCTTACC-
---------ATCTTTGGTCGGGGATTCGAGGAGCTCGTGCAAATCGAGGTTTCCGTGGGGCACAACGCCGTGTCAGTGAT
GCCCGA--TGATGATGCAC-ATCTCACGGTCGCCTGTGTGCATGATCAGAATTCAGAAGTCTTCGATCCAAAATTCGTGC
-GCATGATCCAAATTCCAGAACTCTCTTTTTCTCCCCGCT----TAGTTCAGCGAAAAATTCTAGTTGTAAATGAACCCT
ATGCTTT-------CGCTGAACTAGAAAAATCCATCGACTCACCACATGGATTCTAGGCTAAACAGGCTACTGTTGTTTA
AACTGGAACACTAGATAGTTATGTAGTGTT-----TGCTCCTTTAGGCTAACAAGTCTTGATTAGTATTTGCGGCAATGA
TTGCGCAGCGGATCGTTACATCGAAGAGAATTGTTGGGAGCATCTAAAGACATATATAAATATAATTCAACAAATTCTTA
GTGTGCTGAATTCACTAGCCAAATATAATGTTTGGAAGGTTATTGCCATTCTTCTATCTGTCACCTTATACTTCTAGAAG
CGAGCAAGATAAATAATTTCCGATCCTATTTCGCATCAATTACTGGGAAAAAAA-ATAGGTGCCTAGACTCACACAAGAA
AAAACAAATGGGCCCCCAAGACTGTTTTTTTTTCCCGATCAACAGGAGCCTCGCTCCTGGTTCCATCTTTCATAGAAAGA
CGAAACCAGCATACAGCGTCAGCTTTTAAGGTTCACAGATGAGCTAAGCTCACAAATGCAAAGGCACCTCCTACCCCTCA
CCAACACGCCAAAGGGCAAACCTACAGCAATTACCAAAGGACCTTACAGCAAGAACAGAAATACTCCCATCTAAGGAGTA
ACGAGACCAGATCACTTCTTCAAAGAGGGGACTACTTTCTTTTTTCGCGCTAGTTACACCCTGAACACATGGATTCTATC
ACTGTGTCCAAGGTTCTTCATCAGGTACTCCAGCGAAGTAGCTCCCACATGATCTGCATCACCCACTGCAGCTGCTCAGG
AAGAGTCCATCATACTCTCTGCGCAGATCAGCCTGGTTCCAGCTCCAGTGGTGACCTCAATTTCCTGAGTAGCAGATCCC
TGAACAGGGCTGCATCCCCCCAAGAATTTCCTTGAGAAGTTTTGCCCAGTCCACTACATAACCCACTATCAAATGCCCAG
TCTGTTTCACAGAAATCCAGTTTTTT-CTGTTAAATACTAAGGCATTTCTGCAAATCCAAAGTTCACACAGAACTGCAGA
AGAAACAATGTTTAAGAGCATGAACTTTTTGTTCCATAGCCAATGAGCAGCAAGTGATTTAAAATCAACAATATCAACCT
TTGAAAATTTGTTTAACATCACTTCATATAGCTCTAGCAACGATGCATTCAGAAAACAGGTGATATACTGTAATACTGAT
TCAATCTCACTAGAGTGAATATACTCCAGAGGTTTGGGTAGGCCTCTTTTCCTAAATCCTAAGATTGTCACAAGACTGAA
AAATATACATCCATGTTATATGATAGTCCTGTTTCTGGTGCCTCAGGTTATGGTCCTGTTGTTCAAGGTAGGCCTGTTGA
AGGAAGACCCATGAGAATGCGGCGCCTTCCATGCTGTGGGCTCGGCATGGGCTGGCTTCTGTGAGTGCCTCCCAATACGC
TTGCTATTTTGCCTTACTTTCTGAAGTTAAACCAGTCCCTCACAAAGTTCCGTTCTCTTGCTGGAACAAAGGTTCATTGC
TGGGTTCTTCTTTGCTGCCATTCCGTGGTATATTGGTGC-ATTCATCCTAATCTGCGTCCGGGTACATGACCACAGAGAG
AAACCAGGATATGTTGCCTGCACTGTTGCTGTAAGTTACCTTTCTGATACAACCATAATACTATGCTACTGTTAAGATTT
CACAT-AGAAATTTGAGAC--TTAG--TTTTATGGCCCATCCAACCAGCTTTGTCACATTAACTAA---AATAAATTAGC
TCAAAAGCTTATA----------CTCAGGTGCTGCTTACACTTACAGTTAATTTTACTTGTGATGGCTCCAGTTAAAATA
TTGGTATGCCTGAATTGACAAAA--GCTCTT-TCAACAT---AGTAGATTTTTACTGTACAGATTTAGCAATTGCAAGTA
ACATGGTAATCATTAGAATCACAAATTACGACCTATAACCTGTCACAATTAATTGTTTTGTGCAATACTTGGGCTAACTT
TGCATTCGAATTTGCTGCATCGCACAAACAGGCTATAATTGCGGCCATTGTTATACCCCTTGGAGTAACAAAAGGAACAG
ACTCGTGGTGAGCCACCACCAGGTCTTGGCAGGCGGTTCTGTTGCTGAATATAAACATCGTTATTTCAGGCCCAGTTACA
TGATAGG---TTACAAAGTCTGCTGGTTGTATTTCATGTATGAGTGTGTCTTGTATACATATATGTACAGTAAAAAGAGT
GGGGCTGCATCTTCGATGTTCTCTTGTATCGATACTTGGTACTTATAGTGTGTAATAAAAGCTTGAATGTACAACACATA
TCTTTCTCGAGGTTACCTCTCTTTCA------------------------------------------------------
----------AACTTGATGTTGAAATTTGATGTATCACTCAACAGTTGTTACCCCTCCTTGGAGTAACAAAAGGGGAACA
GACTCGTGGTGAACTGCAACCAGGTCTTGGCAGTGGTTATGTTGCTGAATATAAGTGGTGGTTGTTTCAGTTCCTGCATC
GGCCGTGGCCGTCCTCTTGTGCCTATATTTGATACTTACTGCATTGATGATGCGATGCCCCATA----GATATTTCGGGT
TTCTACTTTGTAATAAAGCTCAAGTGTTTTCAACACATATTTTATATGAGGTTACATCTGTGTCAACTGTCAAGTTCAGC
ACTTTCATATGGTATCTCCAGTTCCCCAAAGTAGATTCATATTGTATCTTAAGCAAGTCTCATTTCTCATTATCATAAGG
ATACTATGCGATATTTACCATCCGAAACAGAACCTATAGTGCCCACATCAATTTGTTAGTTTATGTTCCAGCTTGACACT
TTGTTTGTCGAAAGCAGTGATGTTGTTAGTTTAAAGGGAACAGACTCTGCTGCCCATGAAATCTGTTACTCTTTAGGTCC
TGGCCATGT-TTGGCATGAAGAACCTCTAGATAATTAATCA---------------------------------------
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>chr1D_855
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----------------------------------------------------------TACATCAC--------------
-------ATCACACTGCCGTGCCGT-----TGGCCCCTTCCCTCTCTGTCACCGCCAGCTTCCACACACCTCGTCGGCAC
GGAACACCGCCCCTCGAGTCAAGAGTCAACCCA------CACCCACCGATCTCCGTCCA----TCGACCATGGGAGCCGG
CCAGGACCTGGAGGCCGGCGCCGGCGACGGCGGCGAGAAGAAGATGGCCCACTCCTCCTCC---TCGGGCCCGCTCCCGC
CGTCGGAGCCGCCGCACCTGCGGGGCCAGGACCCCGCCCAGTACCAGTATGGTACCTTCCACCCCCCTGCCCCCCACCCC
GACGTCCGCCCCCACCCGCCC-----------------------------------------------------------
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--GTCGGCTTCCCCCAACCCGCGCCTCCCCCCGGATTCGCCGCCGGCGGCTACCAGCAGCAGCAGCAGAAGCAGCCCTAC
GCGCCCGCCGACCCCTACTACGCGCAGGGGTACCAGGCCGCCCCAGGTACAA----TTCCCCACATGCTCTTGCTTATCT
CCGATGCTTATGTTTGGTCGGCGATGCGAGGAGCTCTTGCAAATC-----------------------------------
-------------------------------------------GATCAGAATTCAGAAGTCTCCAATCCAAAAATCTGCG
TGCATGATCCAAATTTGAACACTCGCCTTTTTCTGCTCGGGTACTAGTCCGGTGACGAATTCTAGATGTAAATGGACCCT
AGGCTTTAGCCTTTAGCTGAACTAG---AATTCATCAACTCGCC---TGGATTCTACGCTAAACGGGCTACTGATGTTTC
AACTGGAACACTAGATACTTATGTACTGTAT---ATGCTCCTTTAGTCTAACATAACAAG----GTATTTGTGGCGACAA
TTGCAGAGCGGACTGTTACATCGGAGAGAATCATTGGGAGCGTGTAGAGACATG--------TAATTAAACAAATTCTTA
GTGTGCTGAATTCACTAGCCAAAGATAATGTTTGGAAGGTTATTGCAGTTCTTCTGTCGGTCACCTTATACTTCTAGAAA
CAAGCAAGATAAATAACTTCAGATCCTATTTCGCATCAATTACTGGGGTAAACAGATAGGTGCCTAGAATCACACAAGAA
AAAACAAATGGACCCCCAAGACTAATTTTTC--CCCGATCAACAGAAGGCTCGCTCCTGGTTCCATCTTTCATAGAAAAA
CGATACCAACATACAGCGTCAGGTTTTAAGGTTCACA-----------------AATGCAAAGACAACTCCTACATCTCA
CCAACACGGCAAAGGGCAAATCTAGAGCAATTACCAAAGGACCTTGCAGCAAGAACATAATTACCATCTAAGC---AGTA
GCGAGACCAGATCACTTCTTCAAAGAGGGGACTACACTATTTTTTCATGCTAGTTACACCCTGAACACATGGATTCCATC
GCTGCGTCCAAGGTTCTTCATCGAGTACTCCAACGAAGTAGCTCCCACATGATCTGCATCACCCACTGCAGCTTTTCAGG
ATGAGTCCATCATTCTCTCTGCGCAGATCAGTCTGGTTGCAGCTCCAGTGGTGACCTCAATTTCCTGAGTAGCAGATCCC
TGGACAGGGCTGCATCCCCCCAAGAATCTCCTTGATAGGTTTTGCCCAGTCCACTAGATAACCCACTATCAAATGCCCAA
CCTGTTTCACAGAAATCCAGTTTTTTCCTGTTAAATACTAAGGCATTTCTGCAAATCCAAAGTCCCCACAGAACTGCAGA
AGAAACAATGTTTAAGAGCATGAACTTTTTGTTCCATAGCCAATGAGCATCAAGTGATTTAAAATCAACAATATCAACCT
TTGAAATTTTGTTTAACATCACTTCATATAGCTCTAGCAACAATGCATTCAAAAAACAGGTGATG--------TACTGAT
TCAATCTCAGTACAGTGAATACATTCCAGAGATTTGGCTAGGCCTCTTTTCCTAAATCCTAAGATTGTCACAAGATGGAA
AAATCTACATCCATGTTATATGATAGTCCTGTTTCTGGTGCCTCAGGTTATGGTCCTGTTGTTCAAGGTAGGCCTGTTGA
AGGAAGACCCGTGAGAATGCGGCGCCTTCCATGCTGTGGGCTCGGCATGGGCTGGCTTCTGTGAGTGCCTCCCAATACGC
TTGCTATTTTGCCTTACTTTCTGAAGTTAAACCAGTCCCTGACAAAGTTCCATTCTCTTGCTGGAACAAAGGTTCATTGC
CGGGTTCTTCTTGGCTGCCATTCCGTGGTATATTGGTGC-TTTCGTCCTAATCTGTGTCCGGGTACATGACCACAGAGAG
AAACCAGGATATGTTGCCTGCACTGTTGCTGTAAGTTACCTTTCTGATACAACCACAATACTTTGCTACTGTTAAGATTT
CACAT-AGAAATTTGAGAC--TGAG--TTTTATGGCCCATTCAACCAGCTTTGTTACATTAACTGA---AATAAATTCGC
TCAAAAGCATATA----------CTTAGGTGCTGCTTACACTTACAGTTAATTTTTCTTGTGATGGCTCCAGTTAAAATA
TTGGTATGCCCGAATTTTGACAAAAGCTCTT-TCAACATAGAAGTAGATTTTTACTGTACAAATTTAGCAATTGCAAGCA
ACATGGAAATCATTAGAATCACAAATTACGAGCTATAACCTGTCACAACAAATTATTTTCTGTAATACTTGGGCTAACTT
TGCATTGGAATTCGCTGCATCGCATAAACAGGCTATAATTGCGGCCATTGTTATACCCCTTGGAGTAACAAAAGGAACAG
ACTCATGGTGAGCCACCACCAGGTCTTGGCAGGCGGTTCTGTTGCTGAATATAAACATCGTTATTTCAGGCCCAGTTACA
TGATAGG---TTAAAAAGTCTGCTGGTTGTATTTCATGTATGAGTGTGTCTTGTATACATATATGTACAGTAAAAAGAGT
GGGGCTGCATCTTCGATGTTCTCTTGTATCGATACTTGGTACTTATAGTGTGTAATAAAAGCTTGAATGTACAACACATA
TCTTCCTCGAGGTTACCTCTCTTTCA------------------------------------------------------
----------AACTTGATGTTGAAATTTGATGTATCACTCAACAATTGTTACCCCTCCTTGGAGTAACATAAAGGGAACA
GACTCGTGGTGAACTGCAACCAGGTCTTGGCAGCGGTTATGTTGATGAATATAAGTGGTGGTTATTTCAGTTCCTGCATC
GACCGTTGCTGTCCTCTTGTGCCTATATTTGATACGTCCTGCGTCGATGATGCGATGTCCCTTCTATCGATATTTCGGGT
TTCTACTTTGTAATAAAGCTCAAGTGTTTCCAACACATATTTTATATGAGGTTGCATCTGTGTCAACTGTCAAGTTCAGC
ACTTTCATATGGTATCTCCAGTTCTGAAAAGTAGATTCATATTGTATCTCAAGCAAGTCTCATTTCTCATTATCATAAGG
AGTATAGGCAATATTTACTGTCCGAATCAGAACCTATAATGCCCACATCAATTTGTTAGTTTATGTTCCAGCTTGACAGT
TTGTTTGTTGAAAGCAGTGATGTTGTTAGTTTAAAGGGAGCAAGCTTTGCTGCCCATGAAATCTGTTACTCTTTAGGTCC
TGGCCATGT-TTGGCATGAATAACCTCCAGATAATTA-------------------------------------------
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>chr5D_3056
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--------CCATGAGAGTGCGGCGCCTTCTGTGTTGTGGACTTGGCATGGGCTGGCTTCTGTGAGTGCCTCCGTA-ACGT
TTGTTATTTTGCCTAACTTTGTGAAGTTAAACCAGCCTTTCACAAAGTTCCATCTCCTTGTTGAAACAAAGGTTCGCTGT
TGTGTTC----TTGCTGCCATTCCATGGTACATTGGAGTGTTTCATCCTAATATATGTCTGGTCACATGACCACAAAGAG
AAAGAAGGATATGCTA-------------TGTAAGTTACCTTTCTGATACAACCACAATACTATGCTGCTATTATTATTC
GAGTTCAGAGATTTGAGAC--TCTGGACTTTATGGTCCGTTAAATCAGTTTTATTAAATTAACTGAAAAAATAGATTAGC
TCACAAGTATGTATACTCAGTATCTCAGGTTCTGCTTG------CAGCTAATTTTTCTTGTAATGGCATCAGCTAAAATA
TTGGTATGATCGAATTGAGAGAA--GTTCTT-TCAACATAGAATTGTATTTTCACTGTATAAATTTAGCAATTGCAGGTA
AGACAGTAATTGTTAGAATCACAAATTACAAG------------------------------------------------
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>chr1D_4388
TTCATATTGTATCTCAAGCAAGTCTCATTTCTCATTATCATAAGGAGTATAGGCAATATTTACTGTCCGAATCAGAACCT
ATAATGCCCACATCAATTTGTTAGTTTATGTTCCAGCTTGACAGTTTGTTTGTTGAAAGCAGTGATGTTGTTAGTTTAAA
GGGAGCAAGCTTTGCTGCCCATGAAATCTGTTACTCTTTAGGTCCTGGCCATGTTTGGCATGAATAACCTCCAGATAATT
AATTATTGTTTGAGTAATAATAAAAAGTAGAAGTGTGATTTAGAGACGAAACCTTCGAGGAGTGACAAACCTTCGAGGTC
CCTGCCAAGACCTGCCAAGACACTCAGCAACATAGCATTTAACACCAGACAAAACCTTCGAGGAGTGACAAACATGGCTT
GCACTGTTGCACAAGGTGGCAAACACCACTTACTAAAAATATATCAAGCAGAAAACAGATTCATTCAAACAAGACCCTCA
CTCAAAAATATATCAAGCAGAAAACACCAGACAAAATTCATGTAGCTCCATTCAAACAAGACCCTCACTCAAAAAAGTTT
CAAATGCAGCCTCTCAGATTTGCTGCATTTGTGGCATCGGTTTGGGACACTTCNNNNNNNNNNACCCGCCGCCCCACCTC
GTCTTCCACGCGCCAAATCGAGCGGCGGCCAGGTAAATCCCTCCTGACCCGCCGGCGTCCACCTCGACCTCCCTCCTCCC
CTCCATTCCCTCCTGACTCCTCCACCTTCCCTTCTCTCTGCAGGATCGGACGAACTCCATCATCGAGCATAACCGGGCCG
AGCTCGAGCCCTACCCACCTGCGTCCAGCGCAGGTATGCTCATCCCCTTCCCGCCCCTCCGGCTGCCGGCGTCCGCCCTC
CCTCTCCCCTGTCCCCCATCTCTTATTGGCAGTGGTTATGTTGATGAATATAAGTGGTGGTTATTTCAGTGTTTATTTCA
GTGAATATAAGTGGTTATGTTGCAAAACCTTCTAATTTGTAATAAAGCTCAAGTGTTTCCAACACATATTTTATATGAGG
TTGCATCTGTGTCAACTGTCAAGTTCAGCACTTTCAT-------------------------------------------
--------------------------------------------------------------------------------
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--------ATGGTATCTCCAGTTCTGAAAAGTAGATTCATATTGTATCTCAAGCAAGTCTCATTTCTCATTATCATAAGG
AGTATAGGCAATATTTACTATCCGAATCAGAACCTATAATGCCCACATCAATTTGTTAGTTTATGTTCCAGCTTGACAGT
TTGTTTGTTGAAAGCAGTGATGTTGTTAGTTTAAAGGGAGCAAGCTTTGCTGCCCATGAAATCTGTTACTCTTTAGGTCC
TGGCCATGT-TTGGCATGAATAACCTCCAGATAATTA-------------------------------------------
--------------------------------------------------------------------------------
---
>SNPs
-----S------S-SSSS--SSSSSSSSS-SS-S-SSSS-S-SSS--SS-SSS-SSS-S-SSSSSSSSS-S--SSSSS-S
--SSSSS-S---SSSS-SSS-S--SSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSS--SSS-SSSSS-SSSSSSSSS-S
SSSSS-SSS-SSSSSSS-S-SSSSS---SSSSSSSSSSS--SSSSSSSSSSSSSSS-S-SSS-S---S--SS---S-S--
SSSSSSS-SSSSSS-SSSSSSSSSS-SSSSSSSSS--SSSS-SSSS-SSSSS-SSSSSS--S---S-S-S-S-SS-SSSS
SSS--S--SSSSSSSSS-SSSS-SSSSSS----SSS-SSSSSSSSS-SSSSSSS-SSS-SSSSSS-SSSSSSS-SSSS--
-SS--S-S-SSSSSSS-SS-SSSSSSSSSS-SS-SSSSS-S-S-SSSSSS--SSS-SSSS-SS-SSSSSSS-S-S-SSSS
S-SS-SSS--S-SSS-S-S-SS-SS--S-SSSSSS-SSS-SSS-SSSSS--SSS-SS-SS-SSS--SSSSSSSS-SSSSS
SS-SSSS-SSSS--SSSS---SSSS--SSSSSSSSS-SSSSSS--SS-SS--SSSSSSSSSSSSSSSSSSSSS-SSSS-S
SSSSSSSSS-SSS-SS-S-SSSSSSSSSSSS---S-SSSSSSS--SSSSSSSSSSS-SSS-SSSSSSSSSSSSSS--SSS
S-SSSS-S-S--SSSS-SSSSSS-SSSSSS--SS-SSSSSSSSSSSS-SSSSSSSS-SSS-SSS-SS-S-S---------
---S----------S--------S---------------------------S---SS-----------------------
-------------------------SSS-S-----------------------------------S--------------
--------------------------------------------------------------------------------
-------------------S-----------------------------------------SSS----------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------S-------S---------------------------------
-----------S--S--------------------S------------------------------S-------------
-------------------S-----S---SS--------S----S--------S-----------S------S-------
SSSSSSSS-----------S----------S-----------S-----S--S--S---S----S----------------
--------------S---------S------S--SSSS---SSSS------------------------S---S------
------S-----------S-----S------S----------------------S-------------------------
----------SS-S-SSSSSSS--S-S---SSSS----------------S-----------------------------
-------S--------S-------SS-SS-S-------------------------------------------------
---------------------S----------------S-----------------------------------------
---S-------------------------------------S---------------------S-------S--------
-------------------------------------S-S----S-----------------------------------
---------------------------------------S----------------------------------------
--------------------------------S----------------------------------S------------
------------------------------------------------S-------S--S--S-----------------
-----S--S-S------------------------S----------SS---------------------------S----
----------------------------------S-S---------S----S-------S--------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
------S--------------------------------S-----------------S----------------------
----------------------------------------S------S--------------------------------
---S-------------------------------------------------------S-------------S------
--------------------SS----------------------------------------------------------
--------------------------------------------------------------------------------
----------S-------------------------------S-------S-----------S-----------------
---S----------------------------------------------------------------------------
------------------------S------------------------SS---S-------------------------
--------S----S-----SS-----------------------------------------------------------
-------S--------------------------------------------------------S---S--S--------
--------S---------S------S-----S----S--S---------------S------------------------
--------------------------------S--------------S------------------------S-------
-------------S------S-----------------------------------------------------------
----------------------S--------------------------------------------S--S-S-S-----
-------SSS----------------------------------------------------------------------
--------------------------------------S------------------------S----------------
---------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----S------------------------S---------------------------------------
--------------------------------------------------------------------------------
---S--S-S-----------S--------------S----------------S----------S----S-S---------
----S---------------------------------------------------------------------------
----------------------------------------------------------S---------------------
----------------------S---------------S---------------------------------------S-
-----------------------------------S-S-S-----S-----------------------S----------
---------S----------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_216
--------------------------------------------------------------------------------
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------------------------------------ACGAGTCAAGCCATTGAGCA------------------------
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---
>reverse_1792
--------------------------------------------------------------------------------
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-------------------------------ACTTTGTCGGGTACTCCAGC-----------------------------
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---
>forward_380
--------------------------------------------------------------------------------
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----------------------------------------GTAGAAAACACCCCCGAGCA--------------------
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---
>reverse_1953
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--------------------------------CCATGCTCCTTTAGGCTAGCA---------------------------
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---
>forward_438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------ACGGCACTAGTGTTGTGTGT------------------------------------------
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---
>reverse_2433
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--------------------------------GCCAAAGGACCTTACAGCAAG---------------------------
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---
>forward_2017
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-----------------------------------------------------------------------------CAA
TTGCGGACCGGATTGTC---------------------------------------------------------------
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---
>reverse_3854
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-------------ACTGCATTGCACAAACAGGC-----------------------------------------------
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---
>forward_3364
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----------------------------------------------------------------AACAAAGGTTCATTGC
CGGC----------------------------------------------------------------------------
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---
>reverse_4931
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--------------------------------------------------GGAGTAGGCGCCCCAAAATA----------
---
