>input_sequence_28239
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----------------------------------------ATGGCGGGCCGAAGGCCACCCCGGCCCTTTTATTTGCCTG
CCGTGCCTGCCCAAAATCTATGCCCGCGGGCCGGTCTTAAAAACACGGCCCGGCCAGGTTTGCCCTTAACCAATGATTTC
AGGGA------AGTAGCACGAGCATCCTCGGCCGAAGCAGCAATGGAGGAAAAGGCGACCCAGAAAGCGGCGGCGGAGGG
------GAACCCTTCGCCGGAGTTGTGCCTGAGGATCCCCGGGGACTACGCCGTCGGCTCCGTCCCCACCGTCCTATACG
TCCCCGACTTCATCTCCCAGACCGAGCAGTCCCAGCTCCTCCACCATGTACTGTACCGGACTAATCCTCTCCTT----CC
TACTACTCACCCAATCCCCTACTTTGGTTTCGCTTTCTTCAGTCTTGCTCGTGTGGTTTGACTTTGAGGCTCTCTCTGGT
GGCGGCTTCCGTTGCAGATATACCAGGCACCGGCGCCCAAGTGGAAGATTTTGAAAAACCGGCGGCTCCAGAACTGGGGT
GCGTCCCCTGATTCATTATCTTGCCGGCTGCAGTCCCTGCC-TGAATCCCTGCTTGGAAATTTGCGCTATTCTTTTCTTT
TCTAGGCTCTGGGAAAGTGTTGATTTGGTCGACCTGTGCTGTGCAGGAGGAGTGGTGCACGAGAAGGGGCTACTGCCTCA
GGCATGTGAGTATCCATCAGCATTGTAATGTTCAGCACAATTTTGTGGATTCTGTGTCATAATGCGGCGTGCTTTATACA
ACTTATGTGCCCCCAATGTGGTTTTACGGAGATACTCCAGGGATTGGTTGTTCCTCCATAATTTG----------GCTTG
CTAACATAATTTGGATGCCCTGTGCCCT-CTCTAGAATCCTTACAAATTTCGGTCAAAAAAAGGAATCCTTACAAATGAC
GAAATCTCCATCAGAGTTTGAGGT-AGAGACATGAAAGAAGATCTCATGTTCTCAGTTTTGAGAGATGACAAGAACTATT
TGTATTATGATCTGTTCTCTCCTTCCATCAGTCAAATAAAGCCTGTTAAAACGGTTTGGTCAGTTGTTTAATCTGTTTTG
CTACTCCAGCTATAATGCCCCACAACAGGATCACATGTTTTTGTTCGAATCGCATTTCTTTTGCTCTATTACATAATTTA
AGCTTTACTATTGGT-TATCATCCTTGCATCTCACAGGCATTTTTTTATCCTCGGGTAAACAGAAACTTATTATAGATGC
CACCACCCCCTCTGTAATCCAAACAATGGCAAAATTGCTATGAGTGTTTGTGGTAGAGACATGTAAAAAGATCTTGTATG
CTCAGTTAAATAAATTACAAAAGCAATATGCACTGTTTTATGTT--CTCTTTCTGTTAGTGAAACAAAAATATTGTA-TT
TTATTTTTGAG-AAATAACTGCATCGGGCTATTCATTGTCAATAAAAGAGCTGGGAAGATCTCAACTCTGGGAGGTTACA
GAGACAGG-AACGCGGAGAAGGAAGACAAG-AAAAGAGGGGAGGTACAGGAGGGCAAAGAGCAAAAAAACAGTAGCTA-C
CTGG-CTGAGATGCTCGATCAGCGACAACGCCGCCATCCAA--------TACCAGATAACGTTCGCGTAGTGTCATTGCA
CAAGCATGTGATCCCCAACAACAGATTGC----------------------------GTTCTC-TTTTGTGTACATTATT
GTTTTTGGTCTATTGCATCATAAGGATGAATTTCATGTT----TGCAGTTTTCTGGCTGGTATTTAAGTGATTTAACTAT
TTATGCATGCTTGGCGTTGTACAGAAGAC-AAAAAAAGTGTTTTCTCAGGAACTAGAAATACGAAGAGTGCTTAAAATTA
CAAACAGTGTACATTCTTTT---TTTCTTAGTTAGGTAGTCATCAGTTTTTAGCATTGAAATTGT----ATTTGTCTAAT
ATTGCAGTACCTCCATGGCTTACAAAGATAACTGACAGAATCTGCCAGTGGACTGGTTTATTTCCTTCAGCAATCAATCA
TGTTCTGATTAATGAGTATCATCCTAATCAAGGGATCATGGTTAGTAATCATCAGCTCCATATTGTTCATTTCTCTGGTA
CTTCTTTTATGGTTTGCGCTTCACTGAACTACAATAACACTGCACCTTTCAGCCACACCAAGATGGTCCTGCCTATTTTC
CTGTTGTCGCTATCATATCCCTTGCTTCACCAGTTGTGCTTGATTTCACACCCCATGGAAAGCTAAGAGAGCTCGAACAT
ACATATCTCCAAAATACACAATCTGATGAGTTGCAGGAGAGTAATGGTTCCTATAAGGTTGAAGGCACGAAGGAAGCTGG
TCCTGCTTCTTCGTCACTTCTACTAATGCCCTGCAGCCTCTTAATATTCAAAGATCAGGCTTATACAGGTTAGCCCTGTA
GCTCCTTTCCTGAATTAGCTAGCTAGATAAAAACCTCTTCAGACTAAGGCTGTCCCTTTTTGTGTGTGACAAAACTAGGC
CTTAATTATTTATATTTTCATGACATTTGCAGACTTCCTACATGGTATACAAGACAATGAGCTGCATAATCTAGACAAGG
TGAAACTTTTGCCCACTGCAAAGCACTCCGAATACGAGCAAACTAACAATCTGCGTCATTTGCATTCCACAGGTTGCAAA
TATCTCACAGTGCCCACAATTCAAGCATCTAAGCCATGATTACAGCCCAGGCAAAGCAGATAGCAGTGCTAGCTCTGAGC
CAAGTGGCACCTTCCGCAGGACCACGACAAGAGTCTCGTTGACGTGCCGGCTAGTGTTGAATGTGCACAGTAAGCTGTTC
AAATTCTAG-----------------------------------------------------------------------
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--------------------------------
>chr3D_1_TraesCS3D01G098200
GAAGACTCGGTTTCCTTGTACGTGTCGACTAGGATAATGTAACCCTAGACCCTCCCAAGTGTATCTATATAAACCGAGGG
GCTAGGTTCGTAGGGGACACATTACAATCTTTGGGTGGTTACGTGTACTCTGTACTCACTCCAACACAATAAACACAAGC
AAAACGTAGGGTATTATCTCATCGGAAAGCCCGGACATGGATAAAACCTCGTGTCTCTATTACCTTCGTGCATATACACT
TAGCTTAGGATCCCCGATCCCTACTTCGAGATCTACCGGATTTAGCTCCGTCACATATGACCCGACATGGCCCGACACGC
ATAAAAAAAAGGTCTGGCACGACACGACCCATGTCGCCCCTTCTATAAAAGAATCGTGTCGTGCCATCCTGAAGGCCTCG
ACTCAGAGATTGGCCTAGCACGCTATGTAAAAAGGCCGGCGCGGTCCGGCATGCCCGTGGGCCGACCTTTTGGGCCGTTT
CGACCTTTCGCGTTTTAAATTTTTAGTAAAAATATAAATGTTAAGATTTTTTAAAGTATAGACAAATGTAAAAAATAATA
CAAATTACAGAAGAATCTAGAAAATTAAACAAATAGAGACAAATCTACTCCCTCTGTTCGTAAATATAAGTCTTTTTAGA
GGTTTCAAATGGACTAGTCTTTTTAGAGGAAAATATAAAAAGAAAAAGGAAAACTTAAGAAAAAAGAAAGAGAAAACGGA
AAAAAAAGAAAAAGATATAGAAACAGAAAAAGATAAAAAAAAAGAAACAGAAAAACCAGTAAAAAAACAAAAACCGGTCC
AGGAAACCTTCTAGAAGGTTCCCAAAACCGGCTGGCTAGTTGGTTTTGTAGGTGCACTGTCTAGGCAGGCCGGACCATCG
CGTCAATGCTCTCGGTCGCTCGCGTGTGCGAAGCGCCGGCAGTTTGACGCAAAGAGCGTCAAATAGGATATCTCTGCCGG
GCCTGCCTTAAGGCTTGACTTCAGGGATGGACCTTGATCCATGGCGGGCCGAAGGCCACCCCGGCCCTTTTATTTGCCTG
CCGTGCCTGCCCAAAATCTATGCCCGCGGGCCGGTCTTAAAAACACGGCCCGGCCAGGTTTGCCCTTAACCAATGATTTC
AGGGA------AGTAGCACGAGCATCCTCGGCCGAAGCAGCAATGGAGGAAAAGGCGACCCAGAAAGCGGCGGCGGAGGG
------GAACCCTTCGCCGGAGTTGTGCCTGAGGATCCCCGGGGACTACGCCGTCGGCTCCGTCCCCACCGTCCTATACG
TCCCCGACTTCATCTCCCAGACCGAGCAGTCCCAGCTCCTCCACCATGTACTGTACCGGACTAATCCTCTCCTT----CC
TACTACTCACCCAATCCCCTACTTTGGTTTCGCTTTCTTCAGTCTTGCTCGTGTGGTTTGACTTTGAGGCTCTCTCTGGT
GGCGGCTTCCGTTGCAGATATACCAGGCACCGGCGCCCAAGTGGAAGATTTTGAAAAACCGGCGGCTCCAGAACTGGGGT
GCGTCCCCTGATTCATTATCTTGCCGGCTGCAGTCCCTGCC-TGAATCCCTGCTTGGAAATTTGCGCTATTCTTTTCTTT
TCTAGGCTCTGGGAAAGTGTTGATTTGGTCGACCTGTGCTGTGCAGGAGGAGTGGTGCACGAGAAGGGGCTACTGCCTCA
GGCATGTGAGTATCCATCAGCATTGTAATGTTCAGCACAATTTTGTGGATTCTGTGTCATAATGCGGCGTGCTTTATACA
ACTTATGTGCCCCCAATGTGGTTTTACGGAGATACTCCAGGGATTGGTTGTTCCTCCATAATTTG----------GCTTG
CTAACATAATTTGGATGCCCTGTGCCCT-CTCTAGAATCCTTACAAATTTCGGTCAAAAAAAGGAATCCTTACAAATGAC
GAAATCTCCATCAGAGTTTGAGGT-AGAGACATGAAAGAAGATCTCATGTTCTCAGTTTTGAGAGATGACAAGAACTATT
TGTATTATGATCTGTTCTCTCCTTCCATCAGTCAAATAAAGCCTGTTAAAACGGTTTGGTCAGTTGTTTAATCTGTTTTG
CTACTCCAGCTATAATGCCCCACAACAGGATCACATGTTTTTGTTCGAATCGCATTTCTTTTGCTCTATTACATAATTTA
AGCTTTACTATTGGT-TATCATCCTTGCATCTCACAGGCATTTTTTTATCCTCGGGTAAACAGAAACTTATTATAGATGC
CACCACCCCCTCTGTAATCCAAACAATGGCAAAATTGCTATGAGTGTTTGTGGTAGAGACATGTAAAAAGATCTTGTATG
CTCAGTTAAATAAATTACAAAAGCAATATGCACTGTTTTATGTT--CTCTTTCTGTTAGTGAAACAAAAATATTGTA-TT
TTATTTTTGAG-AAATAACTGCATCGGGCTATTCATTGTCAATAAAAGAGCTGGGAAGATCTCAACTCTGGGAGGTTACA
GAGACAGG-AACGCGGAGAAGGAAGACAAG-AAAAGAGGGGAGGTACAGGAGGGCAAAGAGCAAAAAAACAGTAGCTA-C
CTGG-CTGAGATGCTCGATCAGCGACAACGCCGCCATCCAA--------TACCAGATAACGTTCGCGTAGTGTCATTGCA
CAAGCATGTGATCCCCAACAACAGATTGC----------------------------GTTCTC-TTTTGTGTACATTATT
GTTTTTGGTCTATTGCATCATAAGGATGAATTTCATGTT----TGCAGTTTTCTGGCTGGTATTTAAGTGATTTAACTAT
TTATGCATGCTTGGCGTTGTACAGAAGAC-AAAAAAAGTGTTTTCTCAGGAACTAGAAATACGAAGAGTGCTTAAAATTA
CAAACAGTGTACATTCTTTT---TTTCTTAGTTAGGTAGTCATCAGTTTTTAGCATTGAAATTGT----ATTTGTCTAAT
ATTGCAGTACCTCCATGGCTTACAAAGATAACTGACAGAATCTGCCAGTGGACTGGTTTATTTCCTTCAGCAATCAATCA
TGTTCTGATTAATGAGTATCATCCTAATCAAGGGATCATGGTTAGTAATCATCAGCTCCATATTGTTCATTTCTCTGGTA
CTTCTTTTATGGTTTGCGCTTCACTGAACTACAATAACACTGCACCTTTCAGCCACACCAAGATGGTCCTGCCTATTTTC
CTGTTGTCGCTATCATATCCCTTGCTTCACCAGTTGTGCTTGATTTCACACCCCATGGAAAGCTAAGAGAGCTCGAACAT
ACATATCTCCAAAATACACAATCTGATGAGTTGCAGGAGAGTAATGGTTCCTATAAGGTTGAAGGCACGAAGGAAGCTGG
TCCTGCTTCTTCGTCACTTCTACTAATGCCCTGCAGCCTCTTAATATTCAAAGATCAGGCTTATACAGGTTAGCCCTGTA
GCTCCTTTCCTGAATTAGCTAGCTAGATAAAAACCTCTTCAGACTAAGGCTGTCCCTTTTTGTGTGTGACAAAACTAGGC
CTTAATTATTTATATTTTCATGACATTTGCAGACTTCCTACATGGTATACAAGACAATGAGCTGCATAATCTAGACAAGG
TGAAACTTTTGCCCACTGCAAAGCACTCCGAATACGAGCAAACTAACAATCTGCGTCATTTGCATTCCACAGGTTGCAAA
TATCTCACAGTGCCCACAATTCAAGCATCTAAGCCATGATTACAGCCCAGGCAAAGCAGATAGCAGTGCTAGCTCTGAGC
CAAGTGGCACCTTCCGCAGGACCACGACAAGAGTCTCGTTGACGTGCCGGCTAGTGTTGAATGTGCACAGTAAGCTGTTC
AAATTCTAGTATCCGTATGGCCTGCTTACATCAGCATGGCCGGG---------GTGAGAATGAACTGTAGTAGATACAGA
GAAGTATGCTAGCAAATCAGAGGATGAGAGGAACACACCATATTGCCCTTATCTGGCCGGTA---------TGATCGTTT
ACCATT-CAAAATGTGAAATTCACGATGTATC----------CCCTCGGCGGACAGGGTTCACTTGTGCTGCAGTTTATC
CATGATTGCATATG-----------------------------TTCGTTCTTGATGTGGTGAATCAGAGTGTTTATCCTT
GATTGATCATATGAATGTAGAAAATATGCATGAATTTTCTTGAATGTAACGGTAGAATGGACTTTTGGTCCTACTAGTAA
TTTCTGAATATACTGCATGGGATGTAGCTGCACTGATGGTTAAGATTATTTGAATTTGGCAGAACCAGAACATTTATGTA
CTCCCTCCGTCCGGAAATACTTGTCCGAGAAATGGATAAAAGCGAATGTATCTAGAACTAAAATATATCTGGATACATCC
ATTTCTCCGACGTGTATTTTCGGACGGAGGGAGTATATACATAAGTAGAGATCATTCCGGCCATGGTTTGTTTTGTGATG
AAAATCGTTGGAGAAATATGTTCATGATCCTGTCCAAATAGTCTTTTGTTTTTCTTCCATGAATGCGCAAATGATGGAAT
ATTTGCATCT--AAACTGTAATGAGATTCAGAAAAAAAAACACTAATGAAATTCATGAAATG-CATTGTGCTTTCATTTG
AGGAAACTTATTTTGAACAAATGA--AAATGGGGGAACTAGAAGCCACTCTGCCT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TATTCTTATAGGAGAAATTGCAGAG
TGATACTTTGAACCCGGGCCAGCGACAACAACCTTTGTGTCGTCTACCTTCATACCAAGGCCAACTTACCATTTCAGGAA
TTTTTCATGGTCTGTTTAAAAAGAATCTTATATTCCCTTGCTCACGTTGTTGTGATCAAGAGATACTGTGTACCGTAAAT
AAGAGTTGATTACACTTTCGACTATGTAGTCT
>chr3A_955
TGCCGGACCG----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----GCCTTAAGGCTTGACTTCAGGAATGGGCCTTCATCCATGGCGAGCCGAAGGCCACCCCGGCCCTTTTATTTGCCTG
CCATGCCGGGCCAAAATCTATGCCCGCGGGCCGGTCTTAAAAACACGGCCTGGCCAGCTTTGCCCTTAACCAATGATTTT
CAGGGAAGTACAGTAGCACGAGCATCCTCGGCCGAAGCAGCAATGGAGGAAAAGTCGACCCAGAAAGCGGCCGCGGCGGA
GGAGGAGAACCCCTCGCCGGAGTTGTGCCTGAGGATCCCCGGGGACTACGCCGTCGGCTCCATCCCCACCGTCCTATACG
TCCCCGACTTCATCTCCGAGACCGAGCAGTCCCAGCTCCTCCACCA-----TGTACTGGACCAATCCTCTCCTTCCTTTC
TACTACTCGCCCGATCCCCTACTTTGGTTTCGCTTTCTCCTGTCTTGCTCGTGTGGTC------TGAGGCTCTCTCCGGT
GGCGGATTCCGTTGCAGGTATACCAGGCACCGGCGCCCAAGTGGAAGATTTTGAAAAACCGGCGGCTCCAGAACTGGGGT
GCGTG---------------TTGCCGGCTGCAGTCCCTGAATTGAATCCCTGCTTGAAAATTTGCGCTATTCTTTTCTTT
TCTTGCCTCTGGGAAAGTGTTGATTTGGTCGACCTGTGCTGTGCAGGAGGAGTGGTGCACGAGAAGGGGCTACTGCCGCA
GGCATGTGAGTATTCATCAGCATTGTAATGTTCAGCACAATTTTGTGGATTCTGTGTCAT----------GCTTTACATA
ACTGAAGTGCCCCCA-TGTGGTTTTACGGAGATACTTCAGGGATTCGTTGTTCCTTCATAATTTGGCTGCGATAAGCTTG
CTAACGTAGTATGGATGCCCTCAGCCCT-CTCTA-----------------------------GAATCCTTAGAATTGAC
GAAATCTCCGTCAGAGTTTGAGGAAAGAGACATGAAAGAAGATCTCATGTTCTCAGTTTTGAGAGATAACAAGAACTATT
TGTATCATCATCTGTTCTCTCTTTCCATCAGTCAAAT-AAATCTGTTAAAATGGTTTGCTCCTTT-TTTAATTTGTTTTG
CTGCTTCAGTTATAATGCCCCGCAACA-GAGCACATGTTTTTGTTCAAATCACATTTCTTTTGGTCTATCACATAATTTA
AGGTTTACTGTTGGTCTATCATCCCTGCATCGCAGGCATGG--TTTTATCATCAGGCAGACAGAAATTTATTTTAGATGC
CCCTACCCCCTCTGTAATCCATACAATGGCAAAATCGCTATGAGTGTTTGTGGTAGAGACATGTAAAAAGATCTTGTGTG
CTCAGTTAAATAAATTGCAAAAGCAATATGCAGTGTCTTATGTTCTCTCTTTCTAATAGTGAAACAAAAATGTTTATTTT
TTATTTTTGAC-AAACAATTGCATTGGGCTATTCATTGTTAATGAGAGAGCTGGGAAGATCTCAACTCTGGGAGATTACA
GAGATAGGAAACATAGAAAAGGAAGACATG-AAAAGAGGGGATGTACAGGAGAGCAAAGGGC-AAAAAACAGTAGCTA-C
CTGGGCTGAGATGCTCGATCAGCGACCACACCGCCAGCTGGTACCAGTCTACCAGATACTGTTCGCGTAGGGGCATTGCA
CAAGCATGTGATCCCCAACAACAGATTGTTCCTTTGTGATCCCCAACAGTTGATTGCGTGCTCTTTTTGTGTACATTATT
GTTTTTGGTCTATTGCATCATAAGGATTAATCCCATGTTTTCATGCAATTTTCTGGCTGGT-----------------AT
CTATGCATGCTTGGCGTTGTACAGAAGAC-AAAAAAAGCGTTTTCTCAGGAACTAAAAATATGATGAGTGCTTAAAATTA
CATACAGTGTACATTCTTTT---TTACTTTAGTTAGGTGTCATCAGTTTTTAGCATTGAAATTACATTCATTTGTCTAAT
ATTGCAGTACCTCCATGGCTTACAAAGATAACTGACAGAATCTGCCAGTGGACTGGTTTATTTCCTTCAGCAATCAATCA
TGTTCTGATTAATGAGTATCATCCTAATCAAGGGATCATGGTCAGTAATCATCAGCTCCATATTGTTCATTTCTCTAGTA
CATCTTCTATGGTTTGCGCTTCACTGAAGTACAATAACACTGCACCTTTCAGCCACATCAAGACGGCCCTGCCTATTTTC
CTGTTGTCGCTATCATATCCCTTGCTTCACCGGTTGTGCTTGATTTCACACCCCACGGAAAGCTCAGAGGGCTTGAACAT
ACATATCTCCAAAATATACAAACTGATGAGCCACAGGAGAGTAATGGTTCCTATAAGGTTGAAGGCACAAAGGAAGCTGG
TCCTG---CTTCGTCACTTCTACTAATGCCCTGCAGCCTGTTAATATTCAAAGATCAGGCTTATACAGGTTAGCCCCGTA
GTTTCTTTCATGAAT----TAGCTTGATAAAAACCTCTTCAGATTATTTTGT--------------TGGCAAAACTAGGC
TTTAGTTATTTATATTTTCATGACATTTGCAGACTTCCTACATGGTATACAAGACACTGAGCTGCATAATCTAGACAAGG
TGAAACTTTTGCCCACTGCAAAGCACCCCGAATACGCGCAAACTAATAATCAACTTTATTTGCATTCTACAGGTTGCAAA
TATCTCACAGTGCCCGCAATTCAAGCATCTAAGCTATGATTACAGCCCAGGCAAAGCAGATAGCAGTGCTAGCTCTGAGC
CAAGTGGCACCTTCCACAGGACCACCACAAGAGTCTCGTTGACGTGCCGGCTAGTGTTGAAGGTACACAATAAGCTGTTC
AAATTCTAGTATCCGTATGGCCTGCTTACATCAGCGTAGCCAGTGGGACAACAGTGAGAAAGAACTGTGGTAGATACAGA
GAAGTATGCTAGCAAATCAGAGGATGAGAGGAACACACCA----------ATCTGGCCGGTATGTGCCTTTTGATCATTT
AGCATTCCAGAATGTGAAAT-----------CACGATGTATCCCCTTGGCGGACAGGGTTCAGTTGTGCTGCCGTTTATC
CA------------------------------------------------------------------------------
------------GAATGTAGAAAGTATGCATGGATTTTCTTGAATGTAATGACAGAATGAACTTTTAATCCTGCTAGTAA
TTTCTGAATATACTGCATGGGATATAGCTGCACTGATGGTTAAGATTATTTGAGTTTGGCAGAACCAGAACATTTATGTA
TATATAAG------------------------------------------------------------------------
-----------------------------------------TAAGTAGAGATCATTCCAGACATGGTTTGTTTTGTGATG
AAAATCTTTGGAGAAATATGTTCATGATCCTGTCCAAATAGTCTTTTGTTTTTCTTCCATGAACGGGCAAATGACGGAAC
ATTTCCATGCAAAAACTGTAGTGAAATTCAGAAAAAAA-----TAATGAAATTCATGAAATGACATCGTGCTTTCATTTA
AGGAAACTTTTTTGAAACAAAGAATGAAAAGGGGGAACTAGAAGCCACTCTGCCGGACCCTGATAAATCCCGAATGTTTG
GATTTTAAGCATGTCATCCCGAACGGTTTTTCATGTCAATTTTAGTTGACGTGAGGTGGCAACTTTAGTTGTTAAAACAT
GGCAACATTGTCCCAGTTCATTTTTTTTTGTCAGAAAATTGCCATGTTTGCCAACCTCGCGTGGACTAAAGTTGCCATGA
AAATCGTTCGGATTGCCATGCTTAAAATCCGAATGTTCGGGATTTATCATTTCCGTATTCTTTTAGGAGAAATTGCAGCG
TGAGACTTTGAACCCGGGCCAGCAAGAACAACCTTTGTGCTGTCTACCTTTGCACCAAGGCCAACTTACCATTTCAGGAA
ATTTTCATGGTCTGTTTAAAAAGAATCATAAATTCCCTCGCTCATGTTGTTGTGATCAAGAGATACTGTGTACTGTAAAT
AAGAGTTGATTACACTTTCGACTATGTAGTCT
>chr3B_1037
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CCTG
CCGTGCCGGGCCAAAATCTGTGCCCGCGGGCCGGTCCTAATAGCACGGCCCGGCCAGGTTTGCCCTTAACCAATGATTTC
AGGGA------AGTAGCACGAGCATCCTCGGCCGAAGCAGCAATGGAGGAAAAGGCGACCCAGAAAGCGGCGGCGGAGGG
------GAACCCCTCGCCGGAGTTGTGCCTGAGGATTCCCGGGGACTACGCCGTCGGCTCCATCCCCACCGTCCTATACG
TTCCCGACTTCATCTCCCAGACCGAGCAGGCCCAGCTCCTCCACCATGTACTGTACTGGACTAACCCTCTCCTT----TC
TACTACTCGCCCGATCCCCTACTTTGGTTTCGCTTTCTTCTGTCTTGCTCGTGTGGTTTGACG----------CTCTGGT
GGCGAATTCCGTTGCAGATATATCAGGCACCGGCGCCCAAGTGGAAGATTTTGAAAAACCGGCGGCTCCAGAACTGGGGT
GCGTG----------------TGCCGGTTGCAGCCCCTGCC-TGAATCCCTGATTGGAAATCTGCGTTATTCTTTTCTTT
TCTCGGCTCTGGGGAAGTGTTGATTTGGTCATCCTGTGCTGTGCAGGAGGAGTGGTGCATGAGAAGGGGCTACTGCCGCA
GGCGTGTGAGTATCCATCAACATTGTAATGTTCAGCACAATTTTGTGGATTCTGTGTCATTATGAAGCATGCTTTACATA
ACTCAAATGCACCCA-TGTGATTATACGGAGATAGTTAAGGAATTCGTTGTTCCTCCATAATTTGGCTGCCATAAGCTTG
CTAACATAGTATGGATGCCCTCTGCCCCCCTCTA-----------------------------GAATCCTTACAAATGAC
GAAATTCCCATCAGAGCTTACGGT-AGAGAGATGAAAGAAGATCTCATGTTCTCAGTTTTGAGAGATGACAAGAACTATT
TGTATTATCATCTGTTCTCTCTTTCCACCAGTCAAATAAAATCTGTTAAAACGGTTT-----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AAACAGAAATTTATTTTAGATGC
CCCTACCCCCTCTGTAATCCATACAATGGCAAAATCGCTATGAGTGTTTGTGGTAGAGACATGTAAAAAGATCTTGT---
-------AAATAAATTGCAAACGCAATATGCATTGTCTTACGTTTTCTCTTTCTATTAGTGAAACAAAAATGTTGTG-TT
TTATTCTTAAGAAAATAACTGTATCGGGCTATTCATTGTCAATGGGAGAGCTGGGAAGATCTCAACTCTGGGAGATTACA
GAAATAGGAAACACGAAAAAGGAAGACAAGAAAAAGAGGGGATGTACAGGAGGGCAA-GAACAAAATAACAGTACCTCCC
CTCG-ATGAGATTCTTGATCAGCGACCACA-CGCCAGCCGG--------TACCAGATATCGTTCGCGTAGGGGCATTGCA
CAAGCAAGTGATTCCCAACAACAGATTGT----------------------------GTGCTCTTTTTGTGTAAATTATT
TTTTTTGGTCTATGACATCATAA-------------------------------GGCTGGC-----------------AT
TTATGCATGCTTGACGTTGTACAGCATACAAAAAAAAGTGTTTTGTCAGGAACTAGAAATATGACGAGTACTTAAAATTA
CAAATAGTGAACATTCCTTTTTTTTTCTTAGTTAGGTAGTCATCAGTTTTTAGCATTGAAATTATGTTCATTTGTCTAAT
ATTGCAGTACCTCCATGGCTTACAAAGATAACTGGCAGAATCTGCCAGTGGACTGGTTTATTTCCTTCTGCAATCAACCA
TGTTCTGATTAATGAGTATCATCCTAATCAAGGGATCATGGTCAGTAATCATCAGCTCCATAATGTTTATTTCTCTGGTA
CATCTTTTATGGTTTGCACTTCACTGAAGTACAATAACACTGCACCTTTCAGCCACACCAAGATGGTCCTGCCTATTTTC
CTGTTGTCGCTATCATATCCCTTGCTTCAGCGGTTGTGCTTGATTTCACACCCCATGGAAAGCTCAGAGGGCTCGAACAT
ACACATCTCCAAAATACACAATCTGATGAGTTGCAGGAGAGTAATGGTTCTTATAAGGTTGAAGGCATGAAGGAAGCTGG
TCCTGCTTCTTCGTCACTTCTACTAATGCCCTGCAGCCTCTTAATATTCAAAGATCAGGCTTATACAGGTTAGCCCTGTA
GCTCCTTTCCTGAATTAGCTAGAT--ATAAAAACCTCTTCAGAGTAAGGCTGTCT-TTTTTGTGTGCGACAAAACTAGGC
CTTGATTATTTATATTTTCATGACATTTGCAGACTTCCTACATGGTATACAAGACAATGAGCTGCATAATCTAGACAAGG
TGAAACTTTTGCCCAGTGCAAAGCACTCCAAATACCAGCAAACTAACAATCTGCGTCATTTGCATTCTACAGGTTGCAAA
TGTCTCACAGTGCCCACAATTCAAGCATCTAAGCCATGATTACAGCCCAGGCAAAGCAGATAGCAGTGTTAGCTCTGAGC
CAAGTGGCACCTTCCGCAGGACCACGACAAGAGTCTCGTTGACGTGCCGGCTAGTGTTGAATGTGCATAGTAAGCTGTTT
AAATACTAGTATCCGTATGGCCTGCTTACATCAGCATAGCCGGTGGGACAACGGTGAGAAAGAACTGTAGTAGATTCAAA
GAAGTATGCTAGCAAATCAGAGGATGAGAGGAACACCCCATATTGCCCCTATCTGGCCGGTGTATGTCTTTTGATCGTTC
AGCATTACAAAATGTGAAAT-----------C----------CCCTCGGCGGACAGGGTTCAGTTGTGCTGCAGTTTATC
CATGATCACATATGTTTCGTTCTTTTTTTTATGGCACATATGTTTCGTTCTTGATGTGGTGAATCAGAGTGTTTATCCTT
GACTGATCATATCAATGTAGAAAATATGCATGAATTTTCTTGAATGTAACGGTAGAATGAACTATTAGTTCTACTAGTAA
TTTCCGAATATATTTCATGGGATATAGCTGCACTGGTGATTAAGATTATTTGAATTTGGCAGAACCAGGACATTGTATAT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>SNPs
SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------------------S----S----S----------S---------------------------------
-------S-S----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S------------------------------------------------S------------------
--------------------------------------------------------S---------------------S-
--------S---S---------------------------S---------------------SS----------------
-----S--------------------------------------------------------------------------
----SSSSSSSSSSSSSSSS------------------------------------------------------------
---S-------------------------------------------------------------------------S--
------------------------------------------------------------S---SS--S-------S-S-
---S-S---------S--------------------S--------S----------------------------------
--------S-S----------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
--------------------------------------------------------------------------------
--------S------------S------------------SS----------------S--SS--S------S-------
--S--S---S-----------S-----S--S---------------S----S-----------S-----S----------
--S------S--------------S------S--SSSSSSSSS-------S--S--S---------S-----S-------
-S-S-----------------S-------------S-----------------------------------------S--
----------------S---------------S---S-----------------S----------------S----S---
-------------------------------------------S-S----------------------------S-----
----S-------S----S------------------------S-------------------------------------
--------------------------S--S------S--SS-----------------S-----------S-S-------
----------------------------S------------------------------S--------------------
---------------------------S---SS--------------S-------------SSSSSSSSSSSSSSSSS--
-------------------------------------------------------------S--S---------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-S--------------------------S---------------------------------------------------
-------------------------------S--------------------------------S----S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S------------------S----------SS------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S-----S----------------S-------------------
------------------------------------------------S-------------------------------
-S------------------SSSSSSSSSSS-------------------------------S-----------------
------SS------------------------------------------------------------------------
--S--------------------------------------------------------S------S-------------
-----------------------S--------------------------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-S-------------------
------S--------------------------------------------------------S-S--------S----S
----S---SS----------S---S-------------SSSSS-----------------------S------------S
---------S---SS------SS------S------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S---------------S-
---S-------------------S-S-------------SS---------SSS---------------------------
S--------------------------S--S-------S-----S----------------------------S------
--------------------------------
>forward_440
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CGCTATGTAAAAAGGCCGGC----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2242
--------------------------------------------------------------------------------
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-ACCACCCCCTCTGTAATCCA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
>forward_495
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGTTT
CGACCTTTCGCGTTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2523
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------GGTACAGGAGGGCAAAGAGC------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_811
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AACCGGTCC
AGGAAACCTTC---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2590
--------------------------------------------------------------------------------
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-----------------------------GCCGCCATCCAATACCAGAT-------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_842
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------CAAAACCGGCTGGCTAGTTG--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2753
--------------------------------------------------------------------------------
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--------------------------------TCATGTTTGCAGTTTTCTGGCT--------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_848
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CGGCTGGCTAGTTGGTTTTG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2796
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACTAT
TTATGCATGCTTGGCGT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_936
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------CGGCAGTTTGACGCAAAGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2798
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAT
TTATGCATGCTTGGCGTTGT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_1537
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GGT
GCGTCCCCTGATTCATT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_3484
--------------------------------------------------------------------------------
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-------------------------------------------CTAAGGCTGTCCCTTTTTGTGTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_3149
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------TGGTTTGCGCTTCACTGAAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_4322
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TCCCTCCGTCCGGAAATACT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
