>input_sequence_28230
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------------------------------------------------ATGAAGTTCTGGGGTAAGCCATACTTCCGCTC
GATGCGATTTGGTCTTCTTCTTTCTCGCGGTGGCTCGGGCCGGTTTCCACAGCTTTC----GCTTCGAATTATGGGTGAT
CACTCGCGTCATCGGCCGTCTCGTCTCGTGCTGCGGGTGCGCGGTTTCTTCCTGACGCTGG-CCGTGCGTTGTGCTGGGA
GACGATCTGTTTTAGGCTCAGCTGGTTCGTTTGCGTACGTGGGGCTTGATTGCTTGAGGTTGAGTATGTGACATGCTTCG
CAGTCGTATTTTTTGCATATCGCCTCGTTGGATGGATGATTTGTGGTGGAATAGTGTGTTCCTTCTCGGGCTTGAGCACT
GCTGGGAGCTACACAATTTATACTTCTGCACCTTGGCGGGCGGTTCATGACAGAGTTATTGG----ACAGCAAGCTGTTT
TGCAGTTCAAC----AGTGCTAACTGATGTTAGGGTTTGCTTTCTTTGGTCGT-----CAAACATTATTGTTGCAGTGAG
TTGACATTGC--------TTCTACGTAGATTTTTGACACAACTTTGTCTATTTGGCTACC-GAAAGAACTGCAGAAAACC
TTTAATTATTTGGTGAATCGGC--AATTTTCATGTATGATCACATAGTTTGTCAGGCATTATGTTGCAGTGAGATGGCAT
TGCTGCTATGTAGATTTTTTTT--CTAATACACCTTTTTCTATCTGAATACCAAAACAGTACTGCAG-ACATCTTTATTT
GCTGAGGCAGCAGTTTTCATTTATGATCATATAGTTTGTGATACCCTTCGTTGGGGCTACATTAACTATCTTTCTTACTA
GTAAAAAA--GATATCATTGTTGGGTTAAATTATAAGTGTTTATTGCCTTATTGGTTGCTATTTTGGTTCAGGTGTGGAA
GTGAAGCCGGGACAGACAGTTTATTGCGACCCTGGTGAAGGGCGTGTTGTTCATCTCACACAGGTTTAGCCATGTCCCTC
ATTGCCTTTGTGTGTACAATTCTCTTAAGCTTAGCCAGTGGTCTC----TCCTTAAGCTAACGGATTTACTTGCATGTTC
TGATTAC-------AGGTTGCCCTGGGTGAAGCAGAGAAAGGAAGTGTCGGCATACTAGTATCTGCTAAAATTGGTGATC
AAAAGGGGGCCATTGGAACTCTGTCGGCTGAAAATCACCCTCATATTCCTTGTGATTTGATCTTTGAGAAACAGTTTGAG
CTATCACACAGTTCAAAAACTGCCAGTGTGTTTGCGTGTGGTTACAAGATTTTTGTGCCTATCTGCGAGTCTGATTCTAG
CGAGCTTGATTCTAGCGAGTTTGATTCCAGTGAGTCTGATTCCAGCGAGTCTGATTCTAGCGAAGATGAAGTGGAAACTG
TAAACAATCAAGTGACCAATCGTATTGTCGGTAAGAAGATTTTGTCTTTTATTATTTTAATCTTGAAGGA-CAATTGTGT
TTCCTCATTAAGCTGGCTGAACTAATAACTTTTGGACCACATTTGTGCCTCTCTATGTTCCATCTTTAAGGCAATGTGGT
AAAGCCTCCAACAACAAAGGATGATAAAAAGGTTACAGATAAACCTGACAGTGGTGAGGATGATAGTGACTTTTCTT---
CAGATTCAGATGATGTAAGTGTGTTCGCTGATGATAATGTAAGTGCATTCACCCTCTTAGTTGTTTGACATATTGATGGC
AATGAAACCTTTTTTCCCAGTATGCCGATGATGGGTACAGTAGCTTAGATACCGATTCTGAAGAGGACGGTACCGGTAGT
GAAGAGATGGATACCAGTAGCAAAGAGGAGGACAAAGACAGTCCTAAGGTGTGGATCTGATAGCTTACAGTTCGCATTGT
TTCCATTTGCTTCAACAGCATCATCTGACTCTTTTGTGCACTACAGACTGAGGATGGCAAGAAGGCGGTGGCCGAGACTG
CCTTGAAGACACCTGCCTCTGACGATACCAGTAGCAAAGAGGGTTCAGGTGATGAGGAAAACAAGAACACTCCTAAGGTG
TGGATCCAACGGTTCTCATTTGTTTCCATTTGCTTCAACAGCATCATCTGACCCTTTTGCACTACAGCCCGAGGATGGCA
AGAAGACGGCGGCCGAGACTGCCTTGAAGACACCTGCCTCGACAGCATCATCTGGCCCTTGTGCACTACAGCCCGAGGAT
GGCGAGAAGACGGTGGCCGCCGAGACTGACTTGAAGACACCTGCCTCTGACGATACCAGTAACAAGGAGGATACAAATGA
TCAGGAAGACAAAAGCACTCCTAAGGTACGGGTCCAAAAGTTCTCATCATTTCCATTTGCTTCAACAGTCTCATCTGACT
CTCGTGCACTACAAAGCCTGAGGTTGGCGGGAAGAGGGCGGCCGAAACCGCCTTGGAGACGCCTGCTCCTGACAAGAAGG
CAAAGATTGAAACACCATCTGGCCAGGACGCCGGT----------------------------GCGGTCGTAAGAACAGT
TTTTAACCAAC----TAAATCCCCATTTACTTCAGATGACAAGAAGACTGTCCATGTGGCAACTCCCCATCCAGCAAAGC
AGGCCGACAAGGCGCCTGCAGGGAACAGCAAGCAAAACCTCAAGTCCAAATATGTCGGCGGCGCCCACGCCTGCAAGTCG
TGCAGCAGGTATGCAGACAGCCTGACAACTTTGTATTCTGGTCTGCAA-GCTTGACATCTAACGCTTTATGCTCTCGTCG
ATTCTTTCAGGACATTCGGCAGTGTTTCAGCGCTCCAATCGCATGAGAAGGCCAAGCACGCTTGAGCTGCT-------GC
TGGTGACAACATGTTGCTGA------------------------------------------------------------
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------------------------------------------------------------------
>chr3D_1_TraesCS3D01G410400
CAAGGAGAGAGGCATACATGAGGGGATGAGTGGCCGTCATGTAGATAAGGATGGAGAGTAATGGAGCGAACGCCAGGTAA
CCGTGCGATTGCACCCGATCCGATGGTAGCGGGTCCGGCTGATACCCAGCGCTGATCAAACAACCGAGGGGAAGTGTTTT
CCTTTAAAAAAAATGATAGACATCACACGGGCTCTCCGACGGGCGTGCCTGCCGCGTCTCTGCCCACTAGTATTTGGATA
ATGGCAACCGTTGTATCTACAAATCTTAATGAATGCCATATGACATTGCTACCACTCACCATCAAGTCTTCCGCAATTCG
CAAAGCTCATGAACTGATGTGACATATGTGGTAAGAAATCAAAATCTGAATAGAACGATGAATATGAAACAATAACGAGA
TTCAGAGAAAAATACCATGATAAGACGTGAATTCATATATGCATTTTTGTCCAGTATTAAATCGTCCAGTGAAATATACC
ACTAGCAATAAAAGTTCTATAGGTGCGGGCTCTCATCCAAAACAGAAGCAAAACATCAG-AGCTTCTCCTTAGCAACTTA
CGAGGACTTGATTATTATCGAAGTACATTACAAGTGAAGTGCATTTCAATTATTGCAGGCTATTTTTTCTATATATGCGA
AATTTAAAATGCATTATGTTTATATATGCAATCAGAAAAAAATAAGAGGGCCATGGCAACACAAGGACATTCTACTATAT
ATAG------TAAAAAAAGAGGAAAGCAAGCTACGGACTCTAAGATGCCTTTTGGGTATTTTTTTCTTCTTAATAAAGAA
GGAAAAACAACGGACGGACGGACAGATCTCAGGCAGAAGAATCAAACGGCCCTGGACCGTCCGCCTCTCTTTAAATTTGG
AGTCCGCTCCCCTGCTCCCCTCCGTCGTCTCCACCGCC-AAAACCCTAAACCCGAGCCTCCTCCCTCTCCCGCTCCAATC
AGCTAGGGTTTTCGCGCGGCCGCCTCTTCGACTCCCCGAGCGACCACGATGAAGTTCTGGGGTAAGCCATACTTCCGCTC
GATGCGATTTGGTCTTCTTCTTTCTCGCGGTGGCTCGGGCCGGTTTCCACAGCTTTC----GCTTCGAATTATGGGTGAT
CACTCGCGTCATCGGCCGTCTCGTCTCGTGCTGCGGGTGCGCGGTTTCTTCCTGACGCTGG-CCGTGCGTTGTGCTGGGA
GACGATCTGTTTTAGGCTCAGCTGGTTCGTTTGCGTACGTGGGGCTTGATTGCTTGAGGTTGAGTATGTGACATGCTTCG
CAGTCGTATTTTTTGCATATCGCCTCGTTGGATGGATGATTTGTGGTGGAATAGTGTGTTCCTTCTCGGGCTTGAGCACT
GCTGGGAGCTACACAATTTATACTTCTGCACCTTGGCGGGCGGTTCATGACAGAGTTATTGG----ACAGCAAGCTGTTT
TGCAGTTCAAC----AGTGCTAACTGATGTTAGGGTTTGCTTTCTTTGGTCGT-----CAAACATTATTGTTGCAGTGAG
TTGACATTGC--------TTCTACGTAGATTTTTGACACAACTTTGTCTATTTGGCTACC-GAAAGAACTGCAGAAAACC
TTTAATTATTTGGTGAATCGGC--AATTTTCATGTATGATCACATAGTTTGTCAGGCATTATGTTGCAGTGAGATGGCAT
TGCTGCTATGTAGATTTTTTTT--CTAATACACCTTTTTCTATCTGAATACCAAAACAGTACTGCAG-ACATCTTTATTT
GCTGAGGCAGCAGTTTTCATTTATGATCATATAGTTTGTGATACCCTTCGTTGGGGCTACATTAACTATCTTTCTTACTA
GTAAAAAA--GATATCATTGTTGGGTTAAATTATAAGTGTTTATTGCCTTATTGGTTGCTATTTTGGTTCAGGTGTGGAA
GTGAAGCCGGGACAGACAGTTTATTGCGACCCTGGTGAAGGGCGTGTTGTTCATCTCACACAGGTTTAGCCATGTCCCTC
ATTGCCTTTGTGTGTACAATTCTCTTAAGCTTAGCCAGTGGTCTC----TCCTTAAGCTAACGGATTTACTTGCATGTTC
TGATTAC-------AGGTTGCCCTGGGTGAAGCAGAGAAAGGAAGTGTCGGCATACTAGTATCTGCTAAAATTGGTGATC
AAAAGGGGGCCATTGGAACTCTGTCGGCTGAAAATCACCCTCATATTCCTTGTGATTTGATCTTTGAGAAACAGTTTGAG
CTATCACACAGTTCAAAAACTGCCAGTGTGTTTGCGTGTGGTTACAAGATTTTTGTGCCTATCTGCGAGTCTGATTCTAG
CGAGCTTGATTCTAGCGAGTTTGATTCCAGTGAGTCTGATTCCAGCGAGTCTGATTCTAGCGAAGATGAAGTGGAAACTG
TAAACAATCAAGTGACCAATCGTATTGTCGGTAAGAAGATTTTGTCTTTTATTATTTTAATCTTGAAGGA-CAATTGTGT
TTCCTCATTAAGCTGGCTGAACTAATAACTTTTGGACCACATTTGTGCCTCTCTATGTTCCATCTTTAAGGCAATGTGGT
AAAGCCTCCAACAACAAAGGATGATAAAAAGGTTACAGATAAACCTGACAGTGGTGAGGATGATAGTGACTTTTCTT---
CAGATTCAGATGATGTAAGTGTGTTCGCTGATGATAATGTAAGTGCATTCACCCTCTTAGTTGTTTGACATATTGATGGC
AATGAAACCTTTTTTCCCAGTATGCCGATGATGGGTACAGTAGCTTAGATACCGATTCTGAAGAGGACGGTACCGGTAGT
GAAGAGATGGATACCAGTAGCAAAGAGGAGGACAAAGACAGTCCTAAGGTGTGGATCTGATAGCTTACAGTTCGCATTGT
TTCCATTTGCTTCAACAGCATCATCTGACTCTTTTGTGCACTACAGACTGAGGATGGCAAGAAGGCGGTGGCCGAGACTG
CCTTGAAGACACCTGCCTCTGACGATACCAGTAGCAAAGAGGGTTCAGGTGATGAGGAAAACAAGAACACTCCTAAGGTG
TGGATCCAACGGTTCTCATTTGTTTCCATTTGCTTCAACAGCATCATCTGACCCTTTTGCACTACAGCCCGAGGATGGCA
AGAAGACGGCGGCCGAGACTGCCTTGAAGACACCTGCCTCGACAGCATCATCTGGCCCTTGTGCACTACAGCCCGAGGAT
GGCGAGAAGACGGTGGCCGCCGAGACTGACTTGAAGACACCTGCCTCTGACGATACCAGTAACAAGGAGGATACAAATGA
TCAGGAAGACAAAAGCACTCCTAAGGTACGGGTCCAAAAGTTCTCATCATTTCCATTTGCTTCAACAGTCTCATCTGACT
CTCGTGCACTACAAAGCCTGAGGTTGGCGGGAAGAGGGCGGCCGAAACCGCCTTGGAGACGCCTGCTCCTGACAAGAAGG
CAAAGATTGAAACACCATCTGGCCAGGACGCCGGT----------------------------GCGGTCGTAAGAACAGT
TTTTAACCAAC----TAAATCCCCATTTACTTCAGATGACAAGAAGACTGTCCATGTGGCAACTCCCCATCCAGCAAAGC
AGGCCGACAAGGCGCCTGCAGGGAACAGCAAGCAAAACCTCAAGTCCAAATATGTCGGCGGCGCCCACGCCTGCAAGTCG
TGCAGCAGGTATGCAGACAGCCTGACAACTTTGTATTCTGGTCTGCAA-GCTTGACATCTAACGCTTTATGCTCTCGTCG
ATTCTTTCAGGACATTCGGCAGTGTTTCAGCGCTCCAATCGCATGAGAAGGCCAAGCACGCTTGAGCTGCT-------GC
TGGTGACAACATGTTGCTGATGCCGATGCTGATGCCCCGTCTCCAACTTCTGTACTCTTGTCAGCCTTAGATTAGTGTTA
GAAA-----GTATTGCATACGGTGTTGGTTCTTATATACCCGGTTTTGTGCCGTTGATATTTTT-GGCGAATCTGATAGC
TACTGAGATGTCGGTTAATATTCGGTAAAGATATTATAGTTGGGAGGTGATGTATGGTAAACCTGGAAATTGGAAAGCCA
TGTTTTGATGTTATATACCGTGTGGAAGCTCTATATATTATTCTGCAGTTCGGTTTCGCCTAGTCTGCTCTGCTCGTAAC
TTGATTTTTCGGGGTGTTCTTGGATTGGTCAAAAGGAGTTGAATTTCTATCGTGAAACATCTGCCGGCTGAATCAAAACA
AACGTTGTAGGAATATCTGCGGATTGCGAGTCATTGAGCACTATCTCAATGAGACTTCGCTGGAATTTTCCATTATACTA
CTAAAGATAAAGAAAACAAGCAGGTAGTAAAGAAAAGGAAAACATTTATCATCTAGTATTTTTAATATTTGTCTGTATTT
TTTTATGTGGAAAACACTTTCCATTAACCTGAAACTGTTGCGGCAGAATCGCTGGCAACCAAACCTAAAAACAAAGCCCG
GCATGTGCTTAATCCAGACAGCGGAGGACACATCCGCTGGAGGATGCAGTTGCTTCTAGCCTCAAAATACAGGACCCCAA
GTTCTGCCTGTCAGAATCTCAAGAGTTGAGGCCTGCACCAGGCGAGGGCTTCAGACTCCAGCGTGACCCGATGAACCCCA
GACTGGCCGCCCCATCAATCGCAACAAAACAAGTCATGGCGTCCGCTTAACACTTTCCCACTCCAGCAGCATTCGCCCGT
GACGTAACCATAAGCTGATTGTTAGACTTCGTTTCTTCCCTAAACTCTGTCAGGTGCTTGGTGATAGTGAAAAGCAAACC
CGCGCCTTCTCTCATGCTTTGATCTTGTTTCGCGACCTTCACACAAGAGTACCCCTACCTGACGCT
>chr3D_84
--------------------------------------------------------------------------------
---TGCGATTGCACCCGATCCGATGGTAGCGGGTCCGGCTGATACCCAGTGCTGATCAAACGACCGAGGGGAAGTGTTTT
CCTTTAAAAAAAGTGATAGACATCAC------------ACGGGCGTGCCTGCCGCGTCTCTGCCCACTAGTATTTGGATA
ATGGCAACCGTTGTATCTACAAATCTTAATGAATGCCATATGACATTGCTACCACTCACCATCAAGTCTTCCGCAATTCG
CAAAGCTCATGAACTGATGTGACATATGTGGTAAGCAATCAAAATCTGAATAGAATGATGAATATGAAACAATAACGAGA
TTCAGAGAAAAATACCATGATAAGACGTGAATTCATATATGCATTTATGTCCAGTATTAAATCGTCCAGTGAAATATACC
ACTAGCAATAAAAGTTCTATAGGTGCGGGCTCTCATCCAAAACAGAAGCAAAACATCAGAAGCTTCTCCTTAGCAACTTA
CGAGCACTTGATTATTATCGAAGTACATTACAAGTGAAGTGCATTTCAATTATTGCAGGCTATTTTTTCTATATATGCGA
AATTTAAAATGCATTATGTTTATATATGCAATCAGAAAAAAATAAGAGGGCCATGGCAACACAAGGACATTCTACTATAT
AT------------------------------------------------------------------------------
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>chr3B_700
ACAAG---------------------------------------------------------------------------
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------------------------------------------------------------------ACATTCTACTATGT
ATAGGAGTAGTAAAAAAAGATGAAAGCAAGCTACGGACTCTAAGATGCCTTTTGGGTATTCTTTTCT------TAAAGAA
GGAAAAACAAAGGACGGACGGACAGATCTCAGGGAGAAGAATCAAACGGCCCTCGGCCGTCCGTCTCTCTTTAAATTTGG
AGTCTGCTCCCCTGTTCCCCTCGGTCGTCTCCACCGCCAAAAACCCTAAACCCCGATCCTTCTCC-CTCCCGCTCCAATC
CGCTAGGGTTTACGCGCAGCCGCGCCTTCGACTCCCCGAGCGACCACGATGAAGTTCTGGGGTAAGCCATACCTCCGTTC
GATGCGATTTGGTCTTCTTCTTTTTCGCGGTGGCTCGGGCCGGTTTCCACGGCTTAATTTTGCTTCGAATTTTGGGTGAT
AACGCGAGTCATCGGTCGCCGCGTCTCGTGCGGCGGGTGCGCGGTTTCGTCCTGATGCTGGGCCGTGCCTTTTGTTGGGA
GACGATCCG-TTTAGGCTCAGCTGGTTCGTTTGCGT----GGGCCTTGATTGCTTGAGGTTGAGT--GTGACATGCTTCG
GTGTCGTATTTTTTGCATGTCGCCTCGTAGGATGGATGATTTGTGGTGGAATAGTGTGTTCCTTCTTGGGCTTGAGCTCT
TCTGGGAGCTACACAATTTATACTTCTGCACCTTGGCGGGCGGTTCATGGCAGTTATTGTCATTCAACAGCAAGCTGTTT
TGCAGTTCAATCAATAGTGGTAACTGATGTTAGCTTTTGCTTTATTTGGTCGTCACTCCAAACATTATTTTTGCAGTGAG
ATGGCATTCC--------TGCTATGT-GATTTTTTATAAAACTTTGTCTATTTTGACTGATGAAAGAAGTGCAGAAAACC
TTTAATTATTTGGTGAATCAGCAAAATTTTCATGTATGATCACATAGTTTGTCAGGCATTATGTTGCAGCGAGATGGCAT
TGCTGCTATATAGATTTTTTTTTCCTAATACACCTTTGTCTATTTGAATACCAA--CAGCACTGCAGAACATCTTTATTT
GGTGAAGTAGCAGTTTTCATTTATGATCATATAGTTTGTGGTACCCTTCGTTGGGGCTAAATTAACTATCTTTCTTAATA
GTAAAAAA--GATATCATTGTTGGGTTAAATTATAAGTATTTATTGCCTTATTGGTTGCTATTTTGGTTCAGGTGTGGAA
GTGAAGCCGGGACAGACAGTTTATTGCGACCCTGGTGAAGGGCGTGTTGTTCATCTCACACAGGTTTAGCCATGTCCCTC
ATTGCCTTTGTGTGTACAATTCTCTTGAGCTTAACCAGTGGTCTCTCGATCCTTAAGCTAACGGATTTACTTGCATGTTC
TGATTACTGATTTCAGGTTGCCCTGGGTGAAACAGAGAAAAGAAGTGTCGGCATACCAGTATCTGCTAAAATTGGTGATC
AGAAGGGGGTCATTGGAACTCTGTCGGCTGAAAATCACCCTCAGATTCTTTGTGATTTGATCTTTGAGAAACAGTTTGAG
CTATCACACAGTTCAAAAACTGCCAGTGTGTTTGCGTGTGGTTACAAGATTCCCAAGCATAACTGCACGTCTGATTCTAG
CGAATCTGATTCTAGCGAATCTGATTCTAGCGAGTTTGATTCCAGCGAGTCTGATTCTAGCGAAGATGAAGTGGAAACTG
TAAACAATCAAGTGGCCAATCCTATTGTTGGTAAGCAGATTTTGTCTTTTATTATTTTAATCTTGAAGGGGCAATTGTGT
TTCCTCATTAAGCTGGCTGAACTAATAACTT-----------------------ATGTTCCATCTTTAAGGCAATGTGGC
AAAGCCTCCGACAACAAAGGATGATAAAAAGGTTACAGATAACCATGACAGTGGTGAGGATGATAGTGATTTTTATTCTA
CAGATTCAGATGATGTAAGTGTGTTCCCTGATGATAATGCAAGTGCGTTCACCCTCTTAATTGTTTGAAATATTGATGGC
AATGAAACCTTTTTATCCAGTACGACGATGATGGGTACAGTAGCTTAGATACCGATTCTGAAGAGGATGGTACCAGTAGT
GAAGAGATGGATACCAGTAGCAAAGAGGAGGACAAAGACAGTCCTAAGGTGTGGATCTGATAGCTTACAGTTCGCGTTGT
TTCCATTTGCTTCAACAGCATCATCTGACTCTGTTGTGCACTACAGCCTGAGGATGGCAAGAAAGCGGTGGCCGAGACTG
CCTTGAAGACACCTGCCTCTGACGACACCAGTAGCAAAGAGGGTTCAAGTGATGAGGAAGACAAAAACACTCCTAAGGTG
TGGATCCAACGGTTCTCATTTGCTTCCATTTGCTTCAACAGCATCATCTGAC----------------------------
--------------------------------------------------------CCTTGTGCACTACAGCCCGAGGAT
GGCGAGAAGACGGTGGGCGCCGAGACTGCCTTGAAGACACCTGCCTCTGACGATACTAGTAACAAGGAGGGTACAAGTGA
TCAGGAAGACAAAAACACTCCTAAGGTACGGGTCCAACAGCTCTCATTATTTCCATTTGCTTCAACAGTCTCATCTGACT
CTTGTGCACTACA--GCCTGAGGTTGGCACGAAGAGGGCGGCCGAAACCGCCTTGGAGACGCCTGCTCCTGACAAGAAGG
CAAAGATTGAAACACCATCTGGCCAGGACACAGGTGCGTCGATACTTACCGTGGACCCTTGTGGCCGTCGTAAGAACAGG
TTTTATAACTGACTATAAAACCCCATTTACTTCAGATGACAAGAAGATTGTCCATGTGGCAACTCCCCATCCAGCAAAGC
AGGCCGACAAGGCGCCT---GGGAACAGCAAGCAACATCTCAAGTCCAAATATGTCGGCGGCGCCCACGCCTGCAAGTCG
TGCAGCAGGTATGCAGACAGCCTGACAACTTTGTAAGCAAAATTGCAGGGCTTGACATCTGACGCTT-ATGCTCTCGTCG
ATTCTTTCAGGACATTCGGCAGTGCTTCGGCGCTCCAATCCCATGAGAAGGCGAAGCACGCTTGAGCTGCTGCTACTGGC
TGGTGACAGCATGTTGCTGATGCTGATGCTGAAGCTCCGTCTCCAACTTCTATACTCTTGTCAGCCTTAGATTAGTCTTA
GGAAGTACTGTATTGCATATGGTGTTGGTTCTTGTATACCCAGTTTTGTGCCGTTCATATTTTTTGGCGAATCTGATAGC
TACTGAGATGTCGGTTAATATTCGGGAAAGATATTGGT----------------TGGTTAACCTGGAAATTGGAAAGCCA
TGTTTTGATGT--TATACCGTGTGGAAGCTCTATATATT---CTGCAGTTCCTTTTTGCC-AGTCTGCTCTGCTGGTAAC
TTAATTCTTGGGGTATGTCCTTTTAACTGCAACGAAGTGGGGTGTTCTCTCACCTCCCCAGTGAAGTCCATATAGGAACT
T-------------------------------------------------------------------------------
------ATAAAGAAAGCAAGCAGGTTATAAAGAAAAGGAAAAAAAAACATTTATCA----------------------TT
TTTTATGTGGAAAATTAACTC---------------------GCAGAATCTCTGGCAACCAAATCTG-AAACAAAGTCCG
GCATGTG------------------------------TGGAGGATGCGGTTGCTTCTAGCCTCACAATACAGGACCCCAA
GTTCTGCCTGTCAGAATCTC------------------------------------------------------------
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>chr1B_1472
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----------------------------------------------------T-----CAAACATTATTGTTGCAGTGAG
ATGGCATTGTTGGCTTGTTGCTATGTAGATTTTTGATACAACTTTGTCTATTTGACTACC-GAAAGAACTGCAGAAAATC
TTTAATTATTTGGTGAATCAGC--AATTTTCATGTATGATC----AGTTTGTCAAGCATTATGTTGCAGTGAGATGGCAT
TGCTGCTGTGTAG-TTTTTTTCTTCTAATACAACTTTGTCTATTTGAATACCAAA-CAGTACTACAGAACATCTTTATTT
GCTGAAGCAGCAGTTTCCATTTATGATCATATAGTTTGTGATACCTTTTGTTGGGGCTACGTTAACTATCTTTCTTAATA
GTAATAAAAGGATATCATTGTTGGGTTAAATTATAAGTGTTTATTGCCTTATTGGTTGCTATTTTGGTTCAGGTGTGGAA
GTGAAGCCGGGACAGACAGTTTATTGCGACCCTCGTGAAGGGCGCGTTGTTCATCTCACACAGGTTTAGCCATGTCCCTC
ATTGCCTTTGCGTGTACAATTCTCTTAAGCTTAACCAGTGGTCTCTC----CTTGAGCTAACGAATTTACTTGCATGTTC
TGATTACTGATTTCAGGTTTCCCTGGGTGAAACAGAGAAGGGAAGTGTCGGCATACCAGTATCTGCTAAAATTGGTGATC
AGAAGGGGGTCATTGGAACTCTGTCGGCTGAAAATCACCCTCATATTCCTTGTGATTTGATCTTTGAGAAACAGTTTGAG
CTATCACACAGTTCAAAAACTGCCAGTGTGTTTGCGTGTGGTTACAAGATTCCCAAGCATAACAGCACGCCTGATTCTCC
AT---------------AGTTTGATTCTAGCGAGTTTGATTCTAGCGAGTCTGATTCTAGCGAATATGAAGTGGAAACTG
TAAACAATCAAGTGGCCAATCCTATTGTTGGTAAGCAGATTTTGTCTTTTATTATTTTAACCTTGAA-------------
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>SNPs
SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------------------------------------S-----------S------------------
------------S-------------SSSSSSSSSSSS------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-------------------S------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------------------------------S------SSSSSS-------
----------S----------------------S-------------------S-S-------S----------------
----S---------S-------S------------------------------SSSS-SSSSS--S--------------
S----------S-----S-----SS-----------------------------------------------S----S--
-----------------------S--------------------------S----SS--------------S--------
S--S--S--------S--S-S----------S----------------S------S------------S--S--S-----
-------S-S--------------------------SSSS---S---------------------SS-------------
SS----------------S---------S-------------------------------------S----------S--
S------------------------------------------------S---SSS-SS-SS------------------
----------S--------S-------------SS--------S------------------------------------
S--S---------------S---S------------S-------------------------------------------
-------------------S------------------------------------------------------------
-------------------------------------S-----S-----------S------------------------
-----S-----------------------------------------------------------------------S--
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---------------------------------S----------------------------------------------
-------------------------------S------------------------S-----------------------
-S-------S----------------------------------------------------------------------
---------------------------------------------------SSSSS--S--S----SS------------
---SSS---------------------S--S----S--------------------------------------------
--------------S------S------S------S---------------------------------S----------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSS-------------------------S
---------S--------------------------------S-S------------------------S----S-----
--------------------------S------------S------S------------S--------S-----------
--------------SS------S-S------------------------------------------S------S-----
---------------------------------------------------------------------------S----
--------------------------------S-------------S----------------S----------------
-------------------------S---------------------S-----------S----S---------------
----------------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
----------------S-----------S---------------------------S-------------S-----S---
--------------S----------------------S--S------S--------------------------------
--S----------SS-------------SS--------------------------------------------------
-----------------------------S-S---------------------------------S-------------S
-----SSSSSS--------S---------------------------S--------------------------------
-----------------SSS---------------S-S------------------------------------------
-----------------------------------SS-SSSSS----S------------S------S------------
------------------------S---S-----------S-----------S---------------------------
--------S--------------S--------S--S---------------S------------------------S---
-S-----------------S-------------S-------S-------------S------------------------
-------------------------S---------SSSSSSSSSSSSSSSSSSS----S---------------------
-----------SS--------------------------SSS---------SS---S---S-------------S-----
--S---S--S---SSSS--S-SSSSSSSS---SSSSSSSS-SSS----S--SSSSSS-SSS--SS-S-SSS--SSS---S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---------S---------SS---------------S-SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSS--
--------------SSSSS--SSSSSSSSSSSSSSSSSSSSS--------S------------S--SS--------S---
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------S---------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_74
------------------------------------------------------AGAGTAATGGAGCGAACGCC------
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>reverse_1189
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--------------------------------------------------------------------GTTGTGCTGGGA
GACGATCT------------------------------------------------------------------------
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>forward_142
--------------------------------------------------------------------------------
------------------------------------------TACCCAGCGCTGATCAAACA------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2170
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CCATTGGAACTCTGTCGGCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_1238
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CAGCTGGTTCGTTTGCGTAC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_3144
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TTGAAGACACCTGCCTCGAC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_3127
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CCCGAGGATGGCA
AGAAGAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_4257
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTGCGGATTGCGAGTCATTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
