>input_sequence_28139
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---------------------------------------------------------------------ATGGCGAAACT
CGCAGCTGTCAGTCGCAGGTGTGTTCCTTTTTCACGCTCTACTTATGATTCGAATTGGTTGTACACTTCCCCGGCAGTTA
ATATTTCCCCATTTGCTCTGTGTGTGGCATGTCAATGCTCGCAGCGTGTTTAGATTTACGAACGAAACCATGAGGATTGT
TATGGTAACGGTTATCGGAGTGGTCCTTGGCTTCTTCATTGGAATTTCATTCCCGTCGGTGAGCATAACAAAGGTAATAA
TGATGATTTTTTTTATCAGTGTAATAACCACATTGTTTTGATTCATCGGAACAGAGTAACTTATTTGTGTTTGGAATGTG
CCAGCTACACTTCCCATCCAGCTTTGTTTCGTACATAGAGGAGAGGAACTCTGGGCTCACGACCCAAGCTTTGCTTAACC
ATGCCTGGAATTCAGTCAGAAATGCAAGGGAGAACACTTCCGAACCAAATACAAACACTACTTTAAAGGTTTTCTTCTAT
GACTTGTTAATTTTGACAGAGTGACAGAATGTTA----------------------------------------------
-------------------------------------------------------------------------------G
TTTAGTTAGTAAAGTATTTGATATGGTGTCCATTTGGCAAAATATTCTGCTTGGATAATCGGTCCGCATAGATTAACCAT
TTATATTGATTACATCCATTCCTGATCAGTGTTCACCTCTACTAGATTTTGTTCACTAAGACAAAATATTTGCTTATGAA
TCATAGATTTATGTCCCGACAAACCCCAGGGGTGCAGAGAGGCTAGCACCAGGCATTGTTGTGCCAGATACTGACTTCCA
TCTGCGCAGGTTGTGGGGAGACCCAAGTGAGGTACATTTTCTTGTGCAGAATACTCACATCACCCAACTGATATTCAGTT
CAATGGAACTA-TTTATAACTGAACATTTTGAGAAATATCTTGCATTCGTATCTCTTTGTAAAATATTCAGATTTACAAG
CATGTGTGCCTTATCTTTAAGCTAGTTCTTTCTTTAAGATCAAAACGTTATGCATTGTTGAGATTGAAATTAATGTTATA
CTTTCTGGGTCTTCATGTTCATCTCCGTTGTTAATAAGTTAGAAACTTAGTACCTCACAACCAGTGCTCACAACTCACAT
GTTATG--TTGAACTAATTCAAATCAGAAGTCCTAAATTCTGTTCCCTTGTACCGTCTGGTGCTTGGTGTGCTGACATTT
GATCTCAAATATGCAGGACCTGCCATTCAAACCAAAGTACCTTGTGACTTTCACTGTTGGATATGCACAGAAAGAAAATA
TAAACAGAGCAGTGAAGAAGGTAATGCTGTTGGCAACTTTATTGAGCAGAACAACCAAAAATTTAACACTACGCAGTTTC
AGCAGAAACTGAATTTTCTTATCTATGCAT-CCATTCCACTTGATTACCATTCTGATTGTTTTTTTTTCC---TTGTTAC
AGTTTTCTGACAATTTCGCTATCCTGTTATTCCACTATGATGGTCGTGTGACCGAATGGGACGAATTTGAGTGGTCAAAG
CGAGCCATCCATATCAGTGTCAGCAAACAAACTAAATGGTGCGCTACTGTGCTGTCACGTGCTGGCTGTTCCTCTGATTG
TAATTTGAAATTAATCTTCTTCTAACGCTTCTTTATGCACGTACCTCAAGGTGGTATGCCAAAAGATTCTTGCACCCTGA
TATTGTGGCAGCTTATGAGTACATATTCATCTGGGATGAAGACCTTGGGGTGGATCATTTCAACGCAGAGGAGTATGCTT
CCACTCTTCAGTTCTCCAGACAATTTTATCTTGATGTGAGAACTGACATATGCATATCGGTGTTGGATTACAGGTACATC
AAACTT-GTTAAGAAAAACGGTCTGGATATCTCCCAGCCCGGCTTGGAACCTGACCGGGGACTAACTTGGCAGATGACCA
AAAGAAGAGGTGACCGAGAGGTGCACAAGTGAGTGGTGCAGTTACAATCTGAAAGAAAGCAAAGAAACATATTTCTTTGT
TCTGATGTGTTAACTTAAGCTGGCAACTTGTGTTGTTGCAGGGAGACAGAGGAAAGGCCAGGCTGGTGTGCTGACCCTCA
TCTTCCACCTTGTGCAGCGTATGTGCTTATTATCCTCTTTGCTGAGTTCTATCCACATCGCTACTATTACACGGAGATCT
AACTGACGCGCCTCTGTTGCTGATTACTTT-GATTTATGTTTTGCTGTAAAACAGGTTTGTTGAAATAATGGCTCCAGTC
TTCTCAAGGGAGGCATGGCGGTGTGTATGGCATATGATTCAGGTCAGTATATGTTACCGGCTAGTGCCTGCCGTCCTATA
TGGACTTGCTCCGTCTTTACTCATTGGTGCCTCTCCTGAACGCAGAATGATTTGGTCCATGGATGGGGTCTCGACTTCGC
CCTCAGGAAATGTGTAGAGGTATATTTATCTCTCTTT----AAATTCATTGTGGAATTTCAGCAGCAGCATATATCGTTA
CTGAATTGTTTTGGTCCTCGCCTCCACAGCCTGCTCATGAGAAGATCGGAGTCGTCGATTCCCAGTGGATCGTTCACCAG
GTGGTTCCTTCTCTCGGGAACCAGGT-ATTATTCACTACAGATATTTTGCGTATCAGGTACCGCGGCATA-AGGCCAACC
TGCTGATTTGTATG--TGATGAATATGGCAGGGCAAGGCGGAGGGCGGGAAGCCGGCGTGGGAAGGGGTGAGGGCGCGGT
GCCGGAAGGAGTGGGGCATGTTCCAGATGAGGATGGCGGATGCCGAGAAGGCCTACTACAAGATGATGGGCATCACCCCT
CCAAACTCCACACTTGTCTAG-----------------------------------------------------------
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-----------------------------------
>chr1B_1_TraesCS1B01G031600
TTATGTAGTTTATATAGTTCCCCGTAAGCATACTTGGACTTTCAACGCTCAAGTCTTACTTAATCAGCTGATTTGGTCGG
TCGGTCAGCAGGAGTAATCAATCAATCCCGGTGCTTAATTAGAGCCAGGTCTCTCAAGTTGACTGCAGCCTAAATTTAAA
CTGCTGTTACTACTCGTTGTGATGTTCGATGCC----TCTGAGGTTGAACAATTGCAGGCTGTCAGCGTCTTGTCGGTCA
CTGTAATGTGTTCTGGTTGGCAATTAGTTCATCATCCA---TAAGTC--AGAGAGGCGGGTTTCTGAATTTAGTTCCAGG
CAAAATTTAGGCTACTCTAC-------GACTTATTAGCCCTCCATTCATCGCGAAATATCGTGTTGTTCGATGCTTTTGT
GGTTGAACAATTTCAAACTGTCAGCGTCTT-GGGGGGCATTAGAATATGTTCTGGTTGTCAATCTTGAAAGAAAGAAAAG
AATATGTTCTGGTTGTCAATCTTGAAAAAAGGAAAAGAATATGTTCTGGTTGGTCATTTGTTCATCATGCGTAAGTCAGA
GAGGCAGGTTTCTCAACTTTAGCTGCAGGCAAAAA-TTTAAACTACCACTTACCGTTCGTTAGCTGTCCATTCATCGTG-
AATCGTTGTGTTGTTTGATACATTTGAGGTTGA----------ACAATTTCAAACTGTCAGTGTCTTGTGAGTCATTATA
ATATGTTCTGGTTGTCAGTCTTGAAAAAAGGAAAAATAATATGTTCTGGTTGTCGATCTTGAAAAAAGAAAATAATATGT
TCTGGTTGGTCATTTGTTCATCATGCACAAGTCATGCAAATCTGCAATGTCACTTTCTTGTACTCCTTGGCGTCTCTCAC
CATGGGCTTGCCATTGCGTTTCCTACAGGCTTTCATTTTGTTCTGCGTATGGTGCGCCGCAACTCCATCAGCATGATCTC
TGTGGACAATGAGTAGCTGTCCTCGCTCGCAAGTGTCCACCCCCTGTGGTTGCATTCCTATACTGGATCATGGCGAAACT
CGCAGCTGTCAGTCGCAGGTGTGTTCCTTTTTCACGCTCTACTTATGATTCGAATTGGTTGTACACTTCCCCGGCAGTTA
ATATTTCCCCATTTGCTCTGTGTGTGGCATGTCAATGCTCGCAGCGTGTTTAGATTTACGAACGAAACCATGAGGATTGT
TATGGTAACGGTTATCGGAGTGGTCCTTGGCTTCTTCATTGGAATTTCATTCCCGTCGGTGAGCATAACAAAGGTAATAA
TGATGATTTTTTTTATCAGTGTAATAACCACATTGTTTTGATTCATCGGAACAGAGTAACTTATTTGTGTTTGGAATGTG
CCAGCTACACTTCCCATCCAGCTTTGTTTCGTACATAGAGGAGAGGAACTCTGGGCTCACGACCCAAGCTTTGCTTAACC
ATGCCTGGAATTCAGTCAGAAATGCAAGGGAGAACACTTCCGAACCAAATACAAACACTACTTTAAAGGTTTTCTTCTAT
GACTTGTTAATTTTGACAGAGTGACAGAATGTTA----------------------------------------------
-------------------------------------------------------------------------------G
TTTAGTTAGTAAAGTATTTGATATGGTGTCCATTTGGCAAAATATTCTGCTTGGATAATCGGTCCGCATAGATTAACCAT
TTATATTGATTACATCCATTCCTGATCAGTGTTCACCTCTACTAGATTTTGTTCACTAAGACAAAATATTTGCTTATGAA
TCATAGATTTATGTCCCGACAAACCCCAGGGGTGCAGAGAGGCTAGCACCAGGCATTGTTGTGCCAGATACTGACTTCCA
TCTGCGCAGGTTGTGGGGAGACCCAAGTGAGGTACATTTTCTTGTGCAGAATACTCACATCACCCAACTGATATTCAGTT
CAATGGAACTA-TTTATAACTGAACATTTTGAGAAATATCTTGCATTCGTATCTCTTTGTAAAATATTCAGATTTACAAG
CATGTGTGCCTTATCTTTAAGCTAGTTCTTTCTTTAAGATCAAAACGTTATGCATTGTTGAGATTGAAATTAATGTTATA
CTTTCTGGGTCTTCATGTTCATCTCCGTTGTTAATAAGTTAGAAACTTAGTACCTCACAACCAGTGCTCACAACTCACAT
GTTATG--TTGAACTAATTCAAATCAGAAGTCCTAAATTCTGTTCCCTTGTACCGTCTGGTGCTTGGTGTGCTGACATTT
GATCTCAAATATGCAGGACCTGCCATTCAAACCAAAGTACCTTGTGACTTTCACTGTTGGATATGCACAGAAAGAAAATA
TAAACAGAGCAGTGAAGAAGGTAATGCTGTTGGCAACTTTATTGAGCAGAACAACCAAAAATTTAACACTACGCAGTTTC
AGCAGAAACTGAATTTTCTTATCTATGCAT-CCATTCCACTTGATTACCATTCTGATTGTTTTTTTTTCC---TTGTTAC
AGTTTTCTGACAATTTCGCTATCCTGTTATTCCACTATGATGGTCGTGTGACCGAATGGGACGAATTTGAGTGGTCAAAG
CGAGCCATCCATATCAGTGTCAGCAAACAAACTAAATGGTGCGCTACTGTGCTGTCACGTGCTGGCTGTTCCTCTGATTG
TAATTTGAAATTAATCTTCTTCTAACGCTTCTTTATGCACGTACCTCAAGGTGGTATGCCAAAAGATTCTTGCACCCTGA
TATTGTGGCAGCTTATGAGTACATATTCATCTGGGATGAAGACCTTGGGGTGGATCATTTCAACGCAGAGGAGTATGCTT
CCACTCTTCAGTTCTCCAGACAATTTTATCTTGATGTGAGAACTGACATATGCATATCGGTGTTGGATTACAGGTACATC
AAACTT-GTTAAGAAAAACGGTCTGGATATCTCCCAGCCCGGCTTGGAACCTGACCGGGGACTAACTTGGCAGATGACCA
AAAGAAGAGGTGACCGAGAGGTGCACAAGTGAGTGGTGCAGTTACAATCTGAAAGAAAGCAAAGAAACATATTTCTTTGT
TCTGATGTGTTAACTTAAGCTGGCAACTTGTGTTGTTGCAGGGAGACAGAGGAAAGGCCAGGCTGGTGTGCTGACCCTCA
TCTTCCACCTTGTGCAGCGTATGTGCTTATTATCCTCTTTGCTGAGTTCTATCCACATCGCTACTATTACACGGAGATCT
AACTGACGCGCCTCTGTTGCTGATTACTTT-GATTTATGTTTTGCTGTAAAACAGGTTTGTTGAAATAATGGCTCCAGTC
TTCTCAAGGGAGGCATGGCGGTGTGTATGGCATATGATTCAGGTCAGTATATGTTACCGGCTAGTGCCTGCCGTCCTATA
TGGACTTGCTCCGTCTTTACTCATTGGTGCCTCTCCTGAACGCAGAATGATTTGGTCCATGGATGGGGTCTCGACTTCGC
CCTCAGGAAATGTGTAGAGGTATATTTATCTCTCTTT----AAATTCATTGTGGAATTTCAGCAGCAGCATATATCGTTA
CTGAATTGTTTTGGTCCTCGCCTCCACAGCCTGCTCATGAGAAGATCGGAGTCGTCGATTCCCAGTGGATCGTTCACCAG
GTGGTTCCTTCTCTCGGGAACCAGGT-ATTATTCACTACAGATATTTTGCGTATCAGGTACCGCGGCATA-AGGCCAACC
TGCTGATTTGTATG--TGATGAATATGGCAGGGCAAGGCGGAGGGCGGGAAGCCGGCGTGGGAAGGGGTGAGGGCGCGGT
GCCGGAAGGAGTGGGGCATGTTCCAGATGAGGATGGCGGATGCCGAGAAGGCCTACTACAAGATGATGGGCATCACCCCT
CCAAACTCCACACTTGTCTAGCTTAGCTGATGGCTCGTCTCGGTCCTCCTCGTCTCCATGTTTTCTCTCAGTGGATGACA
TGACAAGCCCTGACTCCTCTACTCGGATGATGGAGATGACGATGACGATGACG---ACGACGACGATGAATGTATAGGTT
TTAGATGCATGTAGAGTTACATGATGGTG-TTATGTATCAACCAACATTACAGTGCGCTTGTCGACTCATGGTCCTTTCT
GACTGTCAATCTCATGAGAGAATTGGCTCGAGAATTTCGAGAAACCTTGTCTTTTTTCAGATTGTACCTGCATATATGG-
--TATATACAATACTACTGAACCAGATTGCATGATAGTAATGAGCACCAGCTAGTCTGTGGTGGTGCATCCCCTGTTCCT
TGGCCTTACCTCTGTGCCAGATTGTCTATGGAAGATGCTGTTTTTTGGTCTGGTGAATGATAGTACAGTACATTACAGGT
GAATCAAAATAGCTCACCATTGCCAGGCAGTCTGGCGGCGATGAGTCCACCATCTCCATCGCAAACCTGAAGACGACACC
TTCTCGCTGATCTTCCTGGTCTCCTTCCGGAGAGATTGCGTGCATCGATATCAAGG-TGCCATACTGAACTTTCCTCTCC
AGAAAAGGTGCAATACTGAATGGTTCTGCTGTTTCTTCTGTTGCAGTGTATGCAG-------------------------
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----------------------------------------------------------GGGGGCCCAATGGATGAAGTAG
C-----------------------------------TGAGCTGCAACTGCATGCAAAGAAGGGCTGGTGCAAGTTTGTGT
G--------TGTGAGGACAGGTATTAACACAGTATGTGTGATTGCCATTATTTTTTCTCTAGACCACTGCTGGTTTTATT
TCCTGCAAAGTAGAACAGCGCAATCTTGGTTATTGACCCAGTTTGGATTTTGGTCCTTTTCGCAAATAAATAAATAAATA
AATTGGATCCTGAGCTGAAATGGGGTAGTTTCACATATGTAGAACACTTATTTTTTTTCAGTTTATGAAGTTTCAGAAAG
ATGGTTCACACATGGAAATGTTCGTATAATATACG
>chr1D_19
------------------TCCCCGTAAGCATACTTGGACTTTCAACGCTCAAGTCTTAGTTAATCAGCTGATTTGGTCGG
TCAG-CAGCAGGAGTAATCAATCCCC----GTGCTTAATTACAGCCAGGTCTCTCAAGTTGACTGCAGGCTAAATTTAAA
CTGCTGTTACTGCTTGTTGTGATGTTCGATGGATACTTCTGAGGTTGAGCAATTGCAGGCTGTCAGCGTCTTGTGGGTCA
CTACAATGTGTTCTGGTTGGTCATTAGTTCATCATGCA---TAAGTCAGAGAGAGGCAGGTTTCTCAAGTTAGCTCCACG
CAAAATTACCACTACTACTACTACGATGACTTATTAGCCTTCCATTCATCGCGAAATATCGTGTTGTTCAATGCTTTTGA
GGTTGAACAATTTCAAAATGTCAGCGTCTTGGGGGGGCATTAGAATATGTTCTGGTTGTCAATCTTGAAAAAA--AAAAG
AATATGTTCTGGTTGTCAATCTTGAAAAAA-GAAAAGAATATGTTCTGGTTGGTCATTTGTTCATCATGCATAAGTCAGA
GAGGCAGGTTTCTCAACTT-AGCCGCAGGCAAAAAATTTAAACTACCACTTACCACTTGTTAGCCGTCCATTCATCATGA
AAACATTGCATTGTTTGATGCTTTTGAGGTGTTGAACCATATTACAATTGCAAACTCTCAGCGTCTTGTGGGTCATTAG-
-------------------------------------AATATGTTCTGGTTGTCAATCTCGAAAAAAGAAAAGAATATGT
TCTGGTTGGTCATTACTTCATCATGCACAGGTCATGCAAATATGCAATGTCACTTGCTTGTACTTCTCGGGGACCCTCAC
CATGGGCTTGCCATTGCGTTTCCTACAGGCTTTCATTTTGTTCTGCGTATGGTGCGGCGCAACTCCATCAGCATGA--TC
TCTGGACGATGAGTAGCAGTCCTCGCTCGCAACTGTCCACCCCCTGTGGTTGCGTTCTTGTACTGGATCATGGCGAAATT
CCCAGCTGTCAGTCGCAGGTGTGTACCTTTTTCACGCTCCACTTCTGATTCCAATTGGCTGTACGCTTCCCCTGCAGTTA
ATATTTCCCCATTTGCTCTTTGTGTGGCATGTCAATGCTCGCAGCGTGTTTAGATTTACGAATGAAACCATGAGGATCGT
TATGGTAACGGTTATCGGAGTGGTCCTTGGCTTCTTCATCGGAATTTCATTCCCGTCGGTGAGCATAACGAAGGTAATAA
TGATGATTTTTTTTATCAGTGAAATAACCACATTGTTTTGGTTCATCGGAACAGAGTAACTTATTTGTGTTTGGAATGTG
CCAGCTACACTTCCCATCCAGCTTTGTTTCGTACATAGAGGAGAGGAACTCTGGGCTCACGACCCAAGCTTTGCTTAATC
ATGCCTGGAATTCTGTCAGAAATGCAAGGGAGAACACTTCCGAACCAAATACAAACACTACTTTAAAGGTTTTGTTCTAT
GACTTGTTAATTTTGACAGAGTGACAGAGTGCTA----------------------------------------------
-------------------------------------------------------------------------------G
TTTAGTTAGTAAAGTATTTGATATGGTGTCCATTTGGCAAAACATTCTGCTTGAATAATCGGTGTGCATAGATTAACCAT
TTACATTGTTTACATCCATTCCTGATCAATGTTCACCTCTACTAGATTTTGTTCACTAAAACAAAATATTTGCTTATGAA
TCATAGATTTATGTCCCGACAAACCCCAGGGGTGCAGAGAGGCTAGCGCCAGGCATTGTTGTGCCAGATACCGACTTCCA
TCTGCGCAGGTTGTGGGGAGACCCAAGTGAGGTACTTCTTCTTGTGCAGAATACTCACATCACCCAACTGCTATTCAGTT
CAATGGAACTATTTTATAACTGAACATCTTGAGAAATGTCTTGAATTCCTATCTCTTTATCAAATATTCAGATTTACAAG
CATGTGTGCCTTATCTTTAAGCTAGTTCTTTCTTTAAGATCAAAATGTTATGCATTGTTGAGATTGAAATTGATGTTATA
CTTTGTGGCTCTTCATGTTCATCTCCATTGTTATTAAGTTAGAAACTTAGTACCTCACAACCAGTGCTCACAACTCACAT
GTTATGTCTTGAACCAATTCAAATCAGAAGTCCTAAATTTTCTGCCCTTCTACCGTCTGGTTCTTGGAGTGCTGACATTT
GATCTCAAATATGCAGGACCTGCCATTCAAACCAAAGTACCTTGTGACTTTCACTGTTGGATATGCACAGAAAGAAAATA
TAAACAGAGCAGTGAAGAAGGTAATGCTGTTGGCAACTTTATTGAGCAGAACAACCAAAATTTTAACACTACGCAGTTTC
GGCAGAAACTGAATTTTCTTATGTATGCATGCCGTTCCACTTGATTACCATTCTGATTGTTTTTTTTCCC---TTGTTGC
AGTTTTCTGACAATTTCGCTATCCTGTTATTCCACTATGATGGTCGTGTGACCGAATGGGACGAATTTGAGTGGTCAAAG
CGAGCCATCCATATCAGTGTCAGCAAACAAACTAAATGGTGCGC-ACTGTGCTGTAATGTGCTGGCTGTTCCTCTGATTG
TAATTTGAAATCAATCTTCTTCTAACGCTTCTTTATGCACGTACCTCTAGGTGGTATGCCAAAAGATTCTTGCACCCTGA
TATTGTGGCAGCTTACGAGTACATATTCATCTGGGATGAAGACCTTGGGGTGGATCATTTCAACGCAGAGGAGTATGCTT
CCACTCTTCAGTTCTCCAGACAATTTTTTCTTGATATGAGAACTGACATATGCATATTGGTGTTGGATTACAGGTACATC
AAACTT-GTTAAGAAAAATGGTCTGGATATCTCCCAGCCCGGCTTAGAACCTGACCGAGGACTAACTTGGCAGATGACCA
AAAGAAGAGGTGACCGAGAGGTCCACAAGTGAGTGGTGCAGTTACAATCTGAAAGAAAGCAAAGAAATAAATTTCTT-GT
TCTGTTGTAGTAACTTCAGCTGGCAAATTCTGTTGTTGCAGGGAGACGGAGGAAAGGCCAGGCTGGTGTGCTGACCCTCA
TCTTCCACCTTGTGCTGCGTATGTGCTTATTATCCTCTTTGCTGAGTTCTATCCACATCTATACTATTACAGAGAGATCT
AACTGACGCGCCTCTGTTGCTGATTACTTT-GATCTATGTTTTGCTGTAAAACAGGTTTGTTGAAATAATGGCTCCAGTC
TTCTCAAGGGAGGCATGGCGATGCGTATGGCATATGATTCAGGTCAGTATATGTTACCGACTAGTGCCTGCCGTCCTATA
TGGACTTGCTCCGTCTTTACTCATTGGTGCCTCTCCTGAACGCAGAATGATTTGGTTCATGGATGGGGCCTCGACTTCGC
CCTCAGGAAGTGCGTAGAGGTATATTTACCTC----TCTTTAAATTCGTCGTGAAATTT---CAGCAGCATATATCTTTA
CTGAACTGTTTTGGTCCTCGTT--CCCAGCCTGCTCATGAGAAGATCGGAGTCGTCGATTCCCAGTGGATCGTTCACCAG
GTGGTTCCTTCTCTCGGGAACCAGGTAATTATTCATTACAGATACTTCGCGTATCAGGTACCATGGCATTGAGGCCAATC
TGCTGATTTGTATGAGTGTTGAATCTGGCAGGGCAAGGCAGAGGGCGGGAAGCCGGCGTGGGAAGGGGTGAGGGCACGGT
GCCGGAAGGAGTGGGGCATGTTCCAGACGAGGTTGGCGGATGCCGAGAAGGCCTACTACAAGATGATGGGCATCACCCCT
CCAAACTCCACACTTGTCTAGCTTAGCTGATGGCTCGTCTCGGTCCTCCTCGTCTCCATGTTTTCTCTCGGTGGATGACA
TGACAAGCCCTGACTCCTCTACTCGGATGATGGAGATGATGATGACGATGACGATGACGACGATGATGAATGTATAGGTT
TTAGATGCATGTAGAG-TACATGATGGTG-TTATGTATGAACCAACATTACAGTGCAGTTGTCGACCCACAGTCCTTTCT
GACTGTCAATCTCATGAGAGAATTGGCTCGAGAATTTCGAGGAACCTTGTCTTTTTCG-GAGTGTACCTGCATATATGAT
CCTATATATAATACTACTGAACCAGATTGCATGATAGTAATGAGCACCAGTTAATCAGGGGTGGTGCATCCCCTGTTCCT
TGGCCTTACCTCTGTGCCAGATTGTCTATGGAAGATGTTGTTTTTTGGTCTGGTGAATGATAGTACAGCACATTACAGGT
GAATCAGAATAGCTCACCATTGCCAGGCAGTC-GGCGGCGATGAGTTCATCATCTCCATCGCAAACCTGAAGACAACACC
TTCTCGCTGATCTTCCTGGTCTCCTTCCGGTGAGATTGCGTGCGTTGATATCAAGG-TGCCATATTGAACATTCCTCTCC
AGAAAAGGTGCAATACTGAATGGTTCTGCTG--TCTTCTGTTGCAGTGTATGTAG-------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------GGGAGGCCCAACGATGAAGCTG
TGCCTTGATCCCGCCTTCAATGTCTGTTTGGGTAGTTGAGCTGCAACTGCCTGCAAAGAAGGGCTGGTGCTAGTTTGTGT
GCTGGAATATGCCAGGACAGGTATGAACACAGTATGTGTGATTGCCATTATTTTCTCTCCAGACCCCTGCTGGTTTTATT
CCCTGCAAAGTAGAACAGCGCAATCTTGGTTATTGACCCAATTTGGATTTTGATCCTTTTCGCAAATAAATAAATAAAT-
---TGGATTTTGAGCTGAAATGGGGTACTTTCAGATATGCAGAACACATTCTTTTTTTCAGTTTATGAAGTTTCAGAAAG
ATAGTTCACACATGGAAATGTTCGTATAATATGCG
>chr1A_85
--------------------------------------------------------------------------------
----TCAGCAGGAGTAATCAATCCCG----GTGCATA----GAGGCAGGTCTCTCAAGTTGACTGTAGGCTAAATTTAAA
CTACTGTTACTACAGGTTGTGATGTTCGAT----ACTTCTGAGGTTGAACAATTGCAAGCTGTCAGCGTCTTGTGGGTCA
CTGCAATGTATTCTGGTTGGTCATTAGTTCATCATGCATAGTAAGTC--AGAGACGCAGGTTTCTCAAGTTAACTGCAGG
CAAAATTTAAACTACTCTAC-------GACTTATTAGCCCTCCATTCATCGCGAAATATCGTGTTGTTCAATGCTTTTGA
GGTTGAACAAATTCAAAATGTCAGCGTCTTGGGGGGGCATTAGAATATGTTCTGGTTGTCAATCTTGAAAGAAAGAAAAG
AATTTGTTCTGGCTGTCAATCTCAAAAAAA-GAAAAGAATATGTTCTGGTTGGTCATTTGTTCATCATGCATAAGCCAGA
GAGGCAGGTTTCTCAACTT-AGCTGCAGGCAAAAA-TTTAAACTACCACTTACCACTTGTTGGCCGTCCATTCATCATGA
AAACATTGCATTGTTTGATGCTTTTGAGGTGTTGAACCATATTACAATTGCAAACTGTCAGTGTCTTGTGGGTCA-----
-------------------------------------------------------ATCTTGAAAAAAGAAAATAATATGT
TCTGGTTGGTCATTACTTCATCATGCACAGGTCATGCAAATATGCAATGTCACTTGCTTGTACTTCTCGGGGTCTCTCAC
CATGGGTTTGCCATTGTGTTTCCTACAGGTTTTGATTTTGTTCTGCGTATGGTGCGGCGCATCTCCATCAGCATGATCTC
TGTGGACGAGGAGTAGCAGTCCTCGCTCGCAAGTGTCCACCCCCTGTGGTTGCGTTCTTGTACTGGATCATGGCGAAATT
CCCAGCTGTCAGTCGCAGGTGTGTACCTTTTTCGCTCTCTACTTCTGATTTGAATTGGCTATACGCTTCCCCTGCAGTTA
ATATTTCCCCATTTGCTCTTTGCGTGGCATGTCAATGCTCGCAGCGTGTTTAGATTTACGAACGAAACCATGAGGATTGT
TATGGTAACTGTTATCGGAGTGGTCCTTGGCTTCTTCATTGGAATTTCATTCCCGTCGGTCAGCATAACAAAGGTAGTAA
TGATGTTTTTTTTTCTCAGTGTAACCG---CATTGTTTTGGTTCAACGGAACAGAGTAACTTATTTGTGTTTGGAATGTG
CCAGCTACACTTCCCATCCAGCTTTGTTTCGTACATAGAGGAGAGGAACTCTGGGCTCACGACCCAAGCTTTACTTAATC
ATGCCTGGAATTCTGTCAGGAATGCAAGGGAGAACACTTCCGAACCAAATACAAACACTACTTTAAAGGTTTTCTTCTAT
GACTTGTTAATTTTGACATTGTGACAGAATGCTACTCCCTCCGTTCCGAATTACTTGTCTTAGATTTGTCTAGATACGGA
GGTATCTAGCACTAAAATGAGTCTAGATACATCCGTATCTAGACAAATCCAAGACAAGTAATTCGGAACGGAGGGAGTAG
TTTAGTTTGTAAAGTATTTGATATGGCGTCCATTTGGCAAAACATTCTGCTTGAATAATCGGTGTGCATAGATTAACCAT
TTACATTGATCACATCCATTCCTGATCAATGTTCACCTCTACTAGATTTTGTCCACTAAAACAAAGTATTTGCTTATGAA
TCATAGATTTATGTCCCGACAAACCCCAGGGGTGCAGAGAGGCTAGCACCAGGCATTGTTGTGCCAGATACCGACTTCCA
TCTGCGCAGATTGTGGGGAGACCCAAGTGAGGTACATTTTCTTGGGCAGAATACTCACATCACCTAACTGATATCCAGTT
CAATGGAACTA-TTTATAACTGAACATCTTGAGAAATATCTTGCATTCCCATCTCTGTGTCGAATATTCAGATTTACAAG
CATGTGTGCGTTATCTTTAAGCCAGTTCTCTCTTTAAGATCAAAACGTCATGCACTGTTGAGATTGAAATTAATGTTATA
CTTTGTGGCTCTTCATGTTCATCTCCATTGTTATTAAGTTAGAAACTTAGTACCTCACAACCAGTGCTCACAACTCACAT
GTTATGTCTTGAACTAATTCAAATCAGAAGTCCTAAATTCTGTACCCTTCTACCGTCTGGTGCTTGGTGTGCTGATATTT
GATCTCAAATATGCAGGACCTGCCATTCAAACCAAAGTACCTTGTGACTTTCACTGTTGGATATGCACAGAAAGAAAATA
TAAACAGAGCAGTGAAGAAGGTAATGCTGTTGTCAACTTTATTGAGCAGAATAACCAAAAATTTAGCTCTGTGCAGTTTC
AGTAGAAACTGAATTTTCTTATCAATGCATGCCATTTCACTTGATTACCATCCTGATTGTTTTCTCTTCTTATTTGTTGC
AGTTTTCTGACAATTTTGCTATCCTGTTATTCCACTATGATGGTCGTGTGACCGAATGGGATGAATTTGAGTGGTCAAAG
CGAGCCATCCATATCAGTGTCAGCAAACAAACTAAATGGTGCGCTACTGTGCTGCAATGTGCTGGCTGTTCCTCTGATTG
TAATTTGAAATCAATCTTCTTCTAACGCTTCTTTATGCACGTACCTCTAGGTGGTACGCCAAAAGATTCTTGCACCCTGA
TATTGTGGCAGCTTACGAGTACATATTCATCTGGGATGAAGACCTTGGGGTCGATCATTTCAACGCAGAGGAGTATGCCT
CCACTCTTCAGTTCTCCAGAC-ATTTTTTCTTGATATGAGAACTGACATATACATATTGGTGTTGGATTACAGGTACATC
AAACTT-GTTAAGAAAAATGGTCTGGATATCTCCCAGCCTGGCTTAGAACCTGACCGAGGACTAACTTGGCAGATGACCA
AAAGAAGAGGTGACCGAGAGGTCCACAAGTGAGTGGTGCATTTACAGTCTGAAAGAAAGCAAAGAAATAGATTTCTTTGT
TCTGATGTAGTAACTTGAGCTGGCAACTTGTGTTGTTGCAGGGTGACAGAGGAAAGGCCAGGCTGGTGTGCTGACCCTCA
TCTTCCACCTTGTGCTGCGTATGTGCTTATTA-CCTCTTTTCTGAGTTCGATCCACATCTATACTATTA--GAGAGATCT
AACTGACGCGTCTCTGTTGCTAATTAC-TT-GATTTATGTTTTGCTGTAAAACAGGTTTGTTGAAATAATGGCTCCAGTC
TTCTCAAGGGAGGCATGGCGATGCGTATGGCATATGATTCAGGTCAGTATACGTTACTGGCTAGTGCCTGCCGTCCTATA
TGGACTTTATCCGTCTTTACTCATTGGTGCCTCTCCTGAATGCAGAATGATTTGGTTCATGGATGGGGTCTCGACTTCGC
CCTCAGGAAATGCGTAGAGGTATATTTATCTCTCTTTCTTTAAATTCGTCGTGAAATTT---CAGCAGCATATATCTTTA
CTGAATTGTTTTGGTCTTCGTT--CACAGCCTGCTCATGAGAAGATCGGAGTCGTCGATTCCCAGTGGATCGTTCACCAG
GTGGTTCCTTCTCTTGGGAACCAGGTAATTATTCACTACAGATACTTCGCGTATCAGGTAGCATGGCATTGAGGCCAATC
TGCTGATTTGTATGAGTGTTGAATTTGGCAGGGCAAGGCGGAGGGCGGGAAGCCGGCATGGGAAGGGGTGAGGGCGCGGT
GCCGGAAGGAGTGGGGCATGTTCCAGACGAGGTTGGCGGATGCCGAGAAGGCCTACTACAAGATGATGGGCATCACCCCT
CCAAACTCCACACTTGTCTAGCTTAGCTGATGACTCGTCTCGGTCCTCCTCATCTCCATGTTTTCTTTCGATGGATGACA
TGACAAGCCCTGACTCCTCTACTAGGATGAT------GAAGATGACGATGACAACGATGACGACGATGAATGTATAGCTT
TTAGATGCATGTAGAG-TACATGATGGTGGTTATGTATCAACCAACATTACAGTGCAGTTGTCGACTCATGGTCCTTTCT
GACTGTCGATCTCATGAGAGAATTGGCTCGAGAATTTCGAGAAACCTTGTCTTTT-CG-GATTGTACCTGCATATATGAT
A-TATATATAATACTACTGAACCAGATCGCATAATAGTAATGAGCACCAGTTAATCAGGGGTGGTGCATCCCCTGTTCCT
TGGCCTTAC--CTCTGCCAGATTGTCTATGGAAGATGCTGTTTTTTTGTCTGGTGAATGATAGTACAGTACATTACAGGT
GAATCAAAATAGCTCATCATTGCCAGGCAGTC-GGCGGCGATGAGTTCACCATCTCCATCGCAAACCTGAAGACGACACC
TTCTCGCTGATCTCCTTGGTCTCCTTCCGGTGAGATTGCGTGCATCGATATCAAGGGTGCCATACTGAACTTTCCTCTCC
AGAAAAGGTACAATGCTGAATGGTTCTGCTGTTTCTTCTGTTGCAGTGTATATATATGTAGGGAGGCCCAATGGATGAAG
CACTGCCCTGATCCCACCTTCGATGTCTTTTTTGTTAGTCGGTGTTGGATTATTTCGGTTGAAACAAATATATGCTGACT
ATGTGTATTGCAATTGCATTGTTTTGTGAATTATCCTGTGGCAGAGCAGGTTGAATGTCTGCTTTTGCTCCTGTTTTGGA
TGATATGAAAAACGGGCTCGGGTTTTCCTTGGCCTTGCCTCTGCCAGTTGCCTATGGAAGATGCTGCTTTTTTGGTCTGG
TGAATGACAGTACAATACATTACAGGTGTATCAACAATAGACTCTTCAGGTCGAGGCCACCAGCTGGTTGACGATTGACC
GTCCTGGTGGTGAGCTTCATCATTGCCGGGCAGTCTGCGGCGACGAGACACCATCTTCATCGCAAACCTGAAGGCGACGC
CTTCTCCTTGATCTCCCTGGTCTATTTTCTACCAGCCAGTCTGCACGCATTGATATCAAGGTGTAGGACTGACCTCTTCT
TTGAAAATAACAAATAATGCTGAATGAATCTGCTATTTCTTCTATTGCAGTGTATGCAGGGAGGCCCAAAGATGAAGCTG
TGCCCTGATCCCGCCTTCGATGTCTGTTTCGGTAGTTGAGCTGCAACTGCATGCAAAGAAGGGCTGGTGCAAGTTTGTGT
GCTGAAATATGTCAGGACAGGTATTAAC---GTAGGTGTGATTGCCCTTATTTTCTCTCAAGACCACTGCTGGTTTTATT
TCCTGCAAAGTAGGACAGCGCAATCTTGGTTATTGACCCAATTTGTATTTTGGTCCTTTTCACAAATAAATAAATAAAT-
---TGGATTTTGATCTGAAATGGGGTACTTTCAGATATGTAGAACACTTTCTTTTTTTCAGTTTATGAAGTTTCAGAAAG
ATAGTTCACACATGGAAATGTTCATATAATATACG
>chr7B_1850
--------------------------------------------------------------------------------
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---TGGAACTATTTTATAACTGAACATCTTGAGAAATGTCTTGAATTCCTATCTCTTTGCCAAATATTCAAATCTACAAG
CATGTGTGCCTTATCTTTAAGCTAGTTCTTTCTTTAAGATCAAAACGTTATGCATTGTTGAGATTGAAATTAGTGTTATA
CTTTGTGGCTCTTCATGTTCATCTCCATTGTTATTAAGTTAGAAACTTGGTACCTCACAGACATTG-------CTCACAT
GTTATGTATTGAATTAATTCAAACCAGAAGTCCTAAATTTTGTACCCTTCTACCATCTGGTGCTTGGTGTGCTGACATTT
GATCTCAAATATGCAGGACCTGCCATTCAAACCAAAGTACCTTGTGACCTTCACTGTTGGATATGCACACAAAGAAAATA
TAAACAGAGCAGTGAAGAAGGCAATGTTGTTGTCAACTTTATTGAGCAGAATAACCAAAAAATTAGCTCTGCGCAGTTTT
AGTAGAAACTGAATTTTCTTATCAATGCATGTCATTTCACTCGATTACCATCCTGATAGTTTTTTCTTCTTCTTTGTTGC
AGTTTTCCGACAATTTTGCTATCCTGTTATTCCACTATGATGGCCATGTGACCGAATGGGACGAATTTGAGTGCTCAAAG
CGAGCCATCCATATCAGTGTCAGCAAACAAACTAAATGGTGTGCTACTATGCTGCAATGTGCTGGCTATTCCTCTGATTG
TAATTTGGAATCAATCTTCTTCTAACGCTTCTTTATGCACGTACCTCTAGGTGGTATGCCAAAAGATTCTTGCATCCTGA
TATTGTGGCAGCTTATGAGTACATATTCATCTGGGATGAAGACCTTGGGGTGGATCATTTCAACGCACAGGAGTATGCTT
CCACTGTTCAGTTATCCAGACAATTTTTTCTTGATATGAGGACTGACGTATACATATTGGTGTTGGATTACAGGCACATC
AAACTTTGTTAACAAAGATGGTCTAATTATCTCCTAGCCTGGCTTAGAACCTGACCGAGGACTTACTTGGCAGATGACCA
AAAGAAGAGGTGACCGAGAGGTCCACAAGTGAGTGGTGCAGTTACAATATGAAAGAAAGCAAATAAATAGATTTCTTTGT
TCTGATGTAGTAACTTGAGCTGGCAACTTGTGTTGTTGCAGGGAGACAGAGGAAAGACCAGGCTGGTGTGCTGACCCTCA
TCTTCCACCTTGTGTTGCGTATGTTCTTACTATCCTCTTTGCTGAGTTCTATCCACATCTATACTATTACAGAGATATCT
AACTTACGCTTCTCTGTTGCTAATTAC-TTAGATTTATGTTTTGCTGTAAAACAGGTCTGTTGAAATAATGGCTCCAGTC
TTCGCAAGGGTGGCATGGCGATGCGTATGGCATATGATTCAGGTCAGTATATGTTACCGGCCAGTGCCTGCCGTTATATA
TGGACTTGCTCTGCCTTTACTCATTGGTGCCTCTCCTGAATGCAGAATGATTTAGTTCATGGATGGGGTCTCAACTTTGC
CCTCAGGAACTGCGTAGAGGTATATTTATCTCTCTAT----AA-------------------------------------
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-----------------------------------
>chr7B_1850
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---TGGAACTATTTTATAACTGAACATCTTGAGAAATGTCTTGAATTCCTATCTCTTTGTCAAATATTCAGATCTGCAAG
CATCTGTGCCTTATCTTTAAGCTAGTTCTTTCTTTAAGATCAAAACGTTATGCATTGTTGAGATTGAAATTAGTGTTATA
CTTTGTGGCTCTTCATGTTCATCTCCATTGTTATTAAGTTAGAAACTTGGTACCTCACAGCCATTG-------CTCACAT
GTTATGTCTTGAATTAATTCAAACCAGAAGTCCTG-----------------------GGTGCTTGGTGTGCTGACATTT
GATATCAAATATGCAGGACTTGCCATTCAAACCAAAGTACCTTGTGACCTTCACTGTTGGATATGCATAGAAAGAAAATA
TAAACAGAGCAATGAAGAAGGTAATGCTGTTGTCAACTTTATTGAGCAGAATAACCTAAAAATTAGCTCTGCGCAGTTTT
AGTAGAAATTGAATTTTCTTATCAACGCATGCCATTTCACTTGATTACCATCCTGATTGTTTTTTCTTCTTCTTTGTTGC
AGTTTTCCGACAATTTCGCTATCCTGTTAT--------------------------------------------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSS----------------------------------------S---------------------
--S--------------------SSSSSSS--------------------------------------S-----------
--------------S----------------SS-----------------------------------------S-----
---S----------------SS-------------S---------------------S-------S--S----S------
---------SS----------------------------------------------------------S---------S
-----------------S--------------------------------------------------------------
------------------------------S---------------------------------------S---------
-------------------S----------------------------------SS-S------S-----------S---
--S-S---SS---------S-S--------SSS----------------S--------------------S-------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-------------------------
--------------SS-------------S-----------S-------------S--------S--S--S---------
--------------------------------------------------------S-----------------------
-------S---------S-----------------------------------S---S-S------------------S-
-S----------------------S-------------------S-------------S-----S-------S-------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
------------------------------------------------------------------------------S-
-------------S------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S----------S---------SS---------------
---S------------------------S------------------------------S--------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
---------------------------S--------------------S-----------S-------------------
--------------------------------------------------------------------------------
----S---S-----------------S------S----------------------------------------------
-------------------------------------------S-----S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------------------------------------------------------S-S----------------------
-----------S-----------------------------------S--------------------------------
--------------------------------------------------------------------------------
---------------------------S-------S---------------------S----------------------
------------------S--------------------------S-----------S----------------------
----------------------S--------------------------------------------S-S----------
--------SS------S---------------------------------------------------------------
---------------S-------------------------------------------SS----------SS-------
--------------------------------------------------------------------------------
--------------------S--S--------------------------------------------------------
--------------------------------------------------------S-----------------------
------------S----------------------------------S-S---S-----SSS--------------S---
--------------------SSSS--------------------------------------------------------
--------------------------------------------S--S--------------SS-----S--------S-
------------------S-----S-------------------------------------------------------
---------------------------S----S-----------------------------------------------
---------------------------------------------------------------------S----------
---------------------------------------S----------------------------------------
----------------S---------------------------------------SS----------------------
--------------------------------------------------------SSS-------------------S-
--------S-----------------------------------------S--S--S-S---------------------
--------------------------------------------------------------------------------
--------------------------------S-------------S---------------------------------
------------------------------S-------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S-S--S-SS-------SS-
S-------------------------------------------------------------------------------
------------S-----------------------------------------S----S--------------------
----------------------------------------S--------------------------------------S
SSS-----SS-----------------S-----S---------------SS-----------------------------
--S--------------------------------
>forward_1020
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------CCCCTGTGGTTGCATTCCTA--------------------
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-----------------------------------
>reverse_3006
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---------------------------------------------GGAACCTGACCGGGGACTAA---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1065
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTGTCAGTCGCAGGTGTGTT-------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_3018
--------------------------------------------------------------------------------
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---------------------------------------------------------GGGACTAACTTGGCAGATGAC--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------
>forward_3006
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------ATATCTCCCAGCCCGGCTTG----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------
>reverse_4447
--------------------------------------------------------------------------------
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----------------------------------------------CCACCATCTCCATCGCAAAC--------------
--------------------------------------------------------------------------------
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-----------------------------------
