>input_sequence_28112
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---------------------------------------------------------------------------ATGAG
GTATTACCCTCCACTCCAGCAATTAGATTAATCCCACTGACCTTCACAATTAAGGGGTGTCCTGGTGCGCACCCGGCACA
CCATCTAGATCTGCCCCCTGGCTGTCGACCTATGAGCTGTACGTAGTACCGGTTTTGCTTTGCCCGTGGCATGATTTTCT
GCTTGTTGGGTAGTACGAGTACATTTTAATTTTAC------------T-AAAGAGTATCGGGAATACAAGGGTAGAATGC
TGCACTTCAGCCTGCATTGGTGTTCAAGTGTGATCTCATAACGGTTGGCTGTTGTGTTTGCTTTACTTAGCTTTTGGGGT
AGTTTTGTGTCAGGCTTGGAATTCCTAAGTACTCCCTCAGTTCACAAATATAAGATGTTCTAACTTTTTTCTGAATCGGA
TGTATATAGACAAGTTTTATGTGTTTGTTCATTCATTTCAGTCCGTATGTTAGTTCATATTGAAATATCGAAAACATCTT
ATATTTGTGAACAGAGGAAGTAGTTGATTTCAGGTGGGGCTCATAGGTTTCACCTGATCTCCATCATAATCCTCTCTGAA
CATCAGGAATTTTGCTTTACCTGGAAATTCTTTTTTCTTCTGCCCAAAATCCCTTCACACGGACTCGGTTT-TTGTTTGG
GAAGTTGTTGACAACAAACATGCTTAGTTTAGTTCG-------TAGCAGTAGGGGATTGCACTGGCCTATTCGTTCTATG
CAAAAGGTAGA--------------------------------------------------AATTTCATTGTTTTGAAGT
AGATTAGTTCAATCGATACTTGATAC---------TGTTGTGGATATTTGACATTCTTCCTCCTAATTCAGTATGTAAGC
ATTCCTATTTTTAACCTCT--ATTTGGCTCTGGTTAATTCTAGAATTCAAGAAGTTGGAAACATGAGCTACTGCCAAGCT
ACAACGTACAAGCCTCTTGGTGGGCTCACTTTGGACAGACCATTAGGTCTTGGGAGAACTTGCAAAATACTTCCTCAACA
T---TCTGTATGGCAACATTTTTCTAGATCTTGCAAGCTGCAAGAGAAAGTATATCCAAGGCTTGTTGTTGCTGCTTGCC
ATAAGAGGCTTGGTCCTGTATATGCCTCAAGCGGGAAGGGAAACCTTGATTTTGTCAATGATGTAAGTAGCATTCACAGC
TTTCTTATGATTGATCATTTACTTACTTTGTGGTGGGGTATCTATTGGAAACTTGCAACCTCCTTGCAGCTTAGCAAAAT
TGTCAAGTTTTAATTGGTTTGGCACAATGGAAGTTTCTTATTGATGTTGTAGGAATACATTAGTTTCAGGAATTCCTCTT
TGTGAAATAGGGATATGGTGTAAAATGGGTTGTGCTGGGCAGTTGATATGCTACACACCAAGCA---------CATCAAG
GTTGTTAGGCACAATTGCTCATGTGGGACCATCTGCTAAATTTACTGTTGCTTTCTTTTCAGCCATTCTCTATGGAATCT
TTGAACAAAGCAATGGATGGAGCAAAAAAGCAACAGTCTATACAAGGCTTCCTGATGGAGCAAATAGCTAAGATTACAGG
ACAGGGGTCTGGTGGAAATGGAGGAAATAATAAACGTTATGGAGGCAGTGGTGGTGGTTCTGATGGCCCAGATGACGAAT
CTTTCACGGATTCGTTGTATGAAGTGGTCCAAGTTGTGTTAGCAACTGTTGCTTTTGTACTCACGGTAATTGCATTGCTC
CTTTCTTCCTTATCATTGTCATTCTTTCTGAAATGCTATATTTGT-AACGATAGTTCTGTGCAGATTTTTCAATCTCTTA
TAATGCCTGAACATACAACATTAAGCTAGCATTTTGTTTATTTTCAGTGCAAACTTTTTGTTGTTTATTCACAACCGTA-
GTTGATGGTACAAATACATCATGGACATTATATATTTATTC-----AACACCCCTTTCTCCTTGTGTACTTTAGCTGGCT
CAAAAGGAATAAGGTGGATCAGTGAAGTACAGAATGGTGATATTTCCATTCTCCATTAGTGAGAAAACCATCCGCGTGGC
TCCCGCTTTTGTAAAGGAGATCTCA--TATTTCTTCATGGCAGCTATTTTTGTATTTCTCATAAATATTAATCTTTGTGG
A--------CTAACTTATAAGTAAAAAAGATAAACTACCCTTCGCACTAGAGGAGCTTACCAGTAGGAATGTTAGTTTAT
TGGTGTACCATTAGTAACATGTGCTATGTTTTCTCATGATCATCTTCATTACTAGTGCTGTTCTAGATATA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TACTCCCTCCGTCCGGAAATACTTG
TCATCAAAATGGACAAAAAGGGATGTATCTAGAACTAAAATACATCTAGATACATCCCCTTTTATTCATTTTGATGACAA
GTATTTCCGGACGGAGGGAGTATGTGATAATGTGAAACTAAACTTCCAGCTGCCATAGACAATACTTCCGCACAAATCTT
TTTCCGCCATAACACACGTAACATGAGTGTGCTCATATTGTTGTCGGCTGTGAACCTTAAGGA-CCCCCACATCATCTTT
CTAAACAAGGTTTGCTTCATTATGCAGTACATCCACATCATCAGAGGAGAGGAGCTGTACCGCCTTGCAAGGGACTATAC
CAGATACCTCGTCACTGGCAAGAGAACGTCCCGGCTGAAGCGTGCCATGCTTAACTGGCGTGATTTCTCAGATAGCATCA
CAAAGAATTTCAGCACACAAGACGATGTGTATCGAAGCCCGGTCGCCTCTGAAGCCATGTGGTGGCAACAGCCCCAGAAG
CTGGTTCATCATCTTGGTGACCTTTTCAGAGGCAACCTGCGTCCACATGCCCAGGAATCTTAA-----------------
--------------------------------------------------------------------------------
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-----------------------------------------
>chr2D_1_TraesCS2D01G347100
AAGACCGGGCGAAAACTAAAAAGCCAACCTCCCTACCCCCAAAAAACCCAGCTAAAACCCGAAAACGCGTACAAAAATAA
ATAGAAAAATAAAATCTTGAGGAAGCGCCCAACACGCGACATATGGCGACGGCTGACGCACTCTTAGCCCACCAAAAAAG
ACCATTGAGGGGCTTCCTCAAGGG-TACCCCTTATTTAGTGTCTGCCATCTGCTAAGTTTATGGGAGATAGGGTCCCATG
CTACTATTATACATGAATA-TTAGAACGTAAAGCTAGTTTT-CAGTTTTGTAGTTTCATTCATAAACGCAGAAACTTCAA
TTTCAAGGCCGATAATCTCGTCAAATTTGTTTGTAATCT-TGTTATAGTTAGACATGTGTGGTTGGGCAATCCTTATGAC
CCAACTGTTGTAATTGTGGACATTACTTTGAATCAATAAAGGCTGAAAAGGCTGACGAGATTTCTC--AAAAAAAAATCT
GCCGAGTTTAAAACAAACTTTAAAAAATCTGTCGTTTTTAAGTTTTTTTTGAGCCGTTCTTTTTTATGTTTAAAACAGAC
TTTCAAGAAGCACCATGATATATTTTGGTCTGTTGGCGTGAAGTAGGCCCAGAACTAACAAACCAGCCCAAAAGGGCTAC
AGT------GTACACTGTACAGTACGGTTGTACGAAAAGGT--CCCCTCTGTAGCGGAA-ACAG--GACGACGCAATCCA
ATCCTTCCTCTCCCCACTCCGCCTCCTTCCGCCGTCCCCGCTCTCCGCCCACCGGAGAGCTCGCCGCGGCGCGGCGCGGC
GGAGCCGAGCTCTACTCCTCTTCCCGTGCCTTTCTTTCCGCTCCCTCCTGAGTCCTCCC-----------------TCTG
AATCTCTCCTATAGCCTATACCACAGGCTACAGCTGACGCCTCGATCCCGCCCCCGCCCCCACACGACCGGCCGTCACCG
TTCTTCCTCGCCGG-GACGTCGCGTTCCTGCTGTATCCACCCCGTCCGCGGTCTTTGGCCATTGGGTTTTGAGGTATGAG
GTATTACCCTCCACTCCAGCAATTAGATTAATCCCACTGACCTTCACAATTAAGGGGTGTCCTGGTGCGCACCCGGCACA
CCATCTAGATCTGCCCCCTGGCTGTCGACCTATGAGCTGTACGTAGTACCGGTTTTGCTTTGCCCGTGGCATGATTTTCT
GCTTGTTGGGTAGTACGAGTACATTTTAATTTTAC------------T-AAAGAGTATCGGGAATACAAGGGTAGAATGC
TGCACTTCAGCCTGCATTGGTGTTCAAGTGTGATCTCATAACGGTTGGCTGTTGTGTTTGCTTTACTTAGCTTTTGGGGT
AGTTTTGTGTCAGGCTTGGAATTCCTAAGTACTCCCTCAGTTCACAAATATAAGATGTTCTAACTTTTTTCTGAATCGGA
TGTATATAGACAAGTTTTATGTGTTTGTTCATTCATTTCAGTCCGTATGTTAGTTCATATTGAAATATCGAAAACATCTT
ATATTTGTGAACAGAGGAAGTAGTTGATTTCAGGTGGGGCTCATAGGTTTCACCTGATCTCCATCATAATCCTCTCTGAA
CATCAGGAATTTTGCTTTACCTGGAAATTCTTTTTTCTTCTGCCCAAAATCCCTTCACACGGACTCGGTTT-TTGTTTGG
GAAGTTGTTGACAACAAACATGCTTAGTTTAGTTCG-------TAGCAGTAGGGGATTGCACTGGCCTATTCGTTCTATG
CAAAAGGTAGA--------------------------------------------------AATTTCATTGTTTTGAAGT
AGATTAGTTCAATCGATACTTGATAC---------TGTTGTGGATATTTGACATTCTTCCTCCTAATTCAGTATGTAAGC
ATTCCTATTTTTAACCTCT--ATTTGGCTCTGGTTAATTCTAGAATTCAAGAAGTTGGAAACATGAGCTACTGCCAAGCT
ACAACGTACAAGCCTCTTGGTGGGCTCACTTTGGACAGACCATTAGGTCTTGGGAGAACTTGCAAAATACTTCCTCAACA
T---TCTGTATGGCAACATTTTTCTAGATCTTGCAAGCTGCAAGAGAAAGTATATCCAAGGCTTGTTGTTGCTGCTTGCC
ATAAGAGGCTTGGTCCTGTATATGCCTCAAGCGGGAAGGGAAACCTTGATTTTGTCAATGATGTAAGTAGCATTCACAGC
TTTCTTATGATTGATCATTTACTTACTTTGTGGTGGGGTATCTATTGGAAACTTGCAACCTCCTTGCAGCTTAGCAAAAT
TGTCAAGTTTTAATTGGTTTGGCACAATGGAAGTTTCTTATTGATGTTGTAGGAATACATTAGTTTCAGGAATTCCTCTT
TGTGAAATAGGGATATGGTGTAAAATGGGTTGTGCTGGGCAGTTGATATGCTACACACCAAGCA---------CATCAAG
GTTGTTAGGCACAATTGCTCATGTGGGACCATCTGCTAAATTTACTGTTGCTTTCTTTTCAGCCATTCTCTATGGAATCT
TTGAACAAAGCAATGGATGGAGCAAAAAAGCAACAGTCTATACAAGGCTTCCTGATGGAGCAAATAGCTAAGATTACAGG
ACAGGGGTCTGGTGGAAATGGAGGAAATAATAAACGTTATGGAGGCAGTGGTGGTGGTTCTGATGGCCCAGATGACGAAT
CTTTCACGGATTCGTTGTATGAAGTGGTCCAAGTTGTGTTAGCAACTGTTGCTTTTGTACTCACGGTAATTGCATTGCTC
CTTTCTTCCTTATCATTGTCATTCTTTCTGAAATGCTATATTTGT-AACGATAGTTCTGTGCAGATTTTTCAATCTCTTA
TAATGCCTGAACATACAACATTAAGCTAGCATTTTGTTTATTTTCAGTGCAAACTTTTTGTTGTTTATTCACAACCGTA-
GTTGATGGTACAAATACATCATGGACATTATATATTTATTC-----AACACCCCTTTCTCCTTGTGTACTTTAGCTGGCT
CAAAAGGAATAAGGTGGATCAGTGAAGTACAGAATGGTGATATTTCCATTCTCCATTAGTGAGAAAACCATCCGCGTGGC
TCCCGCTTTTGTAAAGGAGATCTCA--TATTTCTTCATGGCAGCTATTTTTGTATTTCTCATAAATATTAATCTTTGTGG
A--------CTAACTTATAAGTAAAAAAGATAAACTACCCTTCGCACTAGAGGAGCTTACCAGTAGGAATGTTAGTTTAT
TGGTGTACCATTAGTAACATGTGCTATGTTTTCTCATGATCATCTTCATTACTAGTGCTGTTCTAGATATA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TACTCCCTCCGTCCGGAAATACTTG
TCATCAAAATGGACAAAAAGGGATGTATCTAGAACTAAAATACATCTAGATACATCCCCTTTTATTCATTTTGATGACAA
GTATTTCCGGACGGAGGGAGTATGTGATAATGTGAAACTAAACTTCCAGCTGCCATAGACAATACTTCCGCACAAATCTT
TTTCCGCCATAACACACGTAACATGAGTGTGCTCATATTGTTGTCGGCTGTGAACCTTAAGGA-CCCCCACATCATCTTT
CTAAACAAGGTTTGCTTCATTATGCAGTACATCCACATCATCAGAGGAGAGGAGCTGTACCGCCTTGCAAGGGACTATAC
CAGATACCTCGTCACTGGCAAGAGAACGTCCCGGCTGAAGCGTGCCATGCTTAACTGGCGTGATTTCTCAGATAGCATCA
CAAAGAATTTCAGCACACAAGACGATGTGTATCGAAGCCCGGTCGCCTCTGAAGCCATGTGGTGGCAACAGCCCCAGAAG
CTGGTTCATCATCTTGGTGACCTTTTCAGAGGCAACCTGCGTCCACATGCCCAGGAATCTTAAACCCTAGCATTCCACGG
TTGCCTTCGAATTTC---------------TGTTTCTGATCATCTAGTTTATGCCAGTGCTAAGTAAATCGACGCAACTA
GACGATCAGCTGTTTTTTCTGGCGGATGGCGATTCTCGCCTAGT-GTACTGAAATTCATTCATATGATGTGATGCTGTCT
CTGGTCTGTACGTATTGACCACAGAACAGGAGGGTCAGGAGTTAATTCTTGTCAGCTTTGAAGGTCATCATGTAACGTAA
CATCATTGCTATGATCGTCTGCTCGTCCATGGGGTGCTGCAGCTGGCAGCTGGCAGCTTGAATGCTGAATCTGATGGATC
AGAACTGC-AAAGGTCCAAGTACTGTCAGTGAGTCAATGCGGCAAAGAAGTGTACTGCCATCTATAAAGAATGTTGTGGT
GTTCTCAGTGTGATTTGCTTTCCCATGGGCCATGGTAGTTCAGTTTGTCTAGCCTATTTGAG-TTAACTGCAGAGACTTG
CAAGATAATCTCTCCATTTGTTGCTGTCTTTATGTACTCTACTACTCTCTCCGATCCGAAATATAAGTCTTTTTAGAGTT
TCCAACAAAGAACTACGTACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTACATATATTCGTATGTTGTAGT
CCATTTGAAATCTCTAAAAAGACTTATACTCCCTCCGTTCTTAAATATAAGTCTTTTTAGACATTTCAAATGGACTACAA
CATACGGATGTATGTAGACATATTTTAGAGTATAGATTCACTTATTTTGCTCCGTATGTAGTCACTCGTTGAAATCTCTA
AAAAGACTTATATTTTGGAACGGAGGGAGTATTTAGGAACGGAGGGAGTATATAAGGTGCCATGAACAAGTCAAAACCAT
GTCCCCCTCCCTGAATTCAACTGGGGTGGGCCTCTTCATCCCCCTGTTACCAATCATAATCCCCCACATCAGCTTGTTTG
TAAAAAAATAACCTTTTTATAATGTAGTATTACTCTTATAT
>chr2A_6
-----CGGACAAAAACTGAAAAGCCACCCCCCCAAAAAAAATCT-----AGCTAAAACCCGAAAACGCGTACAAAAATAA
ATAGAAAAACATAATCTCGAGGAAGCGCCCAACACGCGACACAAGGCGGGGGCTGACGCGCTCCCAGCCCACCAAAAATG
ACCACTGAGAGGCTTCCGCAAGGGGTACCCCTCATTTTGTTTCTCTCATCTGCTGATTAGT--GGAGATAAGGTCCCATG
CTGCTATTATACATGAAGTTTTAGAACGTAAAGCTAGTTTTTCAGTTTTGTAGTTTCATTCATAAACGCAGAAACTTCAA
TTTTGAGGCTGCTAATCTCGCTAAATTTGCTTGTAACCTGTGTTATAGGTAGACATATGTGGTTGGGCAATCCTCATGAC
------GTTGTACCTGTGGACATCACTTTGATGAAACAAT------AAAGGTTGGTGAGATTTCTCAAAAAAAAAAATCT
TCCGAGTTTAAAACAAACATAACGAAAATCTGCCAT-----------------------TTTTTTAAGTTTAAAATAAAC
TTTCAAGAATTACCATGGTATATTTTGGTCTGTTGGCGTGAAGCAGGCCTAGAACTAACCAACCAGCCCAAACGGGCTAC
ATTTTGGTCTGTAC-----CAGTACGGTTGTACGAAAAGGGTCCCACTCTGTAGCGGAA-AAAAACGACGACGCAATCCA
ATCCTCCTCTCCCCATTCCAGG------CCGCAGTCCCCGCTCACCGCCCACCGGAGAGCTCGTTGCGGCGCGGCGCGGC
GGAGCGGAGCCCTACTCCTCTTCCCGT-CCTTTCTTTCCTCTCCCTCCCGAGTCCTCCCGGCCTACCCGACGCGGCTCTG
AATCTCTTCTGTAGCATATACCACAGGCTACAGCTGACGCCTCGATCCCGTCCCCGCCCTCACACGACCCGCCGTCACCG
TTCTTCCTCGCC-G-GACGTCGCGTTCCTGCTGTATCCACGCCGTCCGCAGTCTTTGGCCATTGGGTTTTGAGGTATGAG
GTTTTACCCTCCACTCCGGCGATTTGATTAATCCTACTGACCTTCACAATTTCCGGGTGCCCTGGTGCGCACCAGGCACA
CCATCTAGATCTGCCGCCTGGCTGTCGACCTATGAGCTGTACGTAGTACGGC-TTTGCTTTGCCCGTGGCATGATTTTCT
GCTTGTTGGGTAGT---AGTACATTTTAATATCACCAGGATTCATGTTAAAAGAGTATAGGGAATACAAGGGTAGAATGC
TGTACTTTAGCCTGCATTGGTGTTCAAGTATGATCTCGTAACGATTGTCTGTTGT-----CTTTACTTAGCTTTTGGGGT
AGTTCTGTGGCAGGTTTGGAATTCCTATAA--------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGTTGATTTCAGGTGGGGTTCATAGGTTTCACCTGATCTCCATCATAATCCTCTCCGAA
CATCGGGAATTTTGCTCTACCTGGAAATCATTTTTTCTTCTGTCCAAAATCCTTTCACATGGACTCAGTTCATCGTTTGG
GAAACTGTGGACAACATACATGCTTAGTTTTGTTCG-------TAGCATTAGTGGATTGTGCCGGCCTATTCCTTCTATA
GCAAGACTCTGACTTCTGGTGAATCATCTTTAGCACTGACTACATGTTATGCAAAACGGAGAAATTTATTCTTTTGAATT
AGATTAGTTCAACTGATACTGTTCTATTGTTGCAGTGTTGTAGATATTTGACATTCTTCTTCCTAACTCAGTATGTAATC
ATTCCTATTTTTAACCTCCAGATTTGGCTCCAGTTAATTCTAGAATTCAAGAAGTTAGAAACATGAGCTACTGCCAAGCT
ACAACGTACAAGCCTCTTGGCGGGCTCACTTTGGACAGACCATTAGGTCTTGGGAGAACTTGCAAAATACTTCCTGAA--
-CATTTTGTATGGCAACATTTTTCTAGATCTTGCAAGCTGCAAGAGAAAGTATATCCAAGGCTTGTTGTTGCTGCTTGCC
ATAAGAGGCTTGGTCCTGTATATGCCTCAAGCGGGAAGGGAAACCT------------TGATGTAAGTATCATTCACAGC
TTTCTTA------------------CTTTGTGATTGGTTTTCTATTGGAAACTTG------------------GCAAATT
TGTCAAGTTTGACTTGGTTTGGCACAATGGAATTTTCTTATTGATGTTGTAGGAATGCTTTAGTTTCAGGAATTCCTCTT
TGGGAGATAGGGATACTGTGTAAAATGGGGTGTGGTAGGCAGTTGATATGCTACGCACCAAGCATATTTAATACATCAAG
GTTGTTAGGCACAATTGCTGATGTGGAACCATCTGCTAAATTTACTGTTGCTTTCTTTTCAGCCATTCTCTATGGAATCT
TTGAACAAAGCAATGGATGGAGCAAAAAAGCAACAGTCCATACAAGGCTTCCTGATGGAGCAAATGGCTAAGATTACAGG
ACAGGGGTCTGGTGGAAATGGAGGAAATAATAACCGTTATGGAGGCAGCGGTGGTGGTTCTGATGGCCCGGATGACGAAT
CTTTCACGGATTCATTGTATGAAGTGGTCCAAGTTGTGTTAGCAACTGTTGCTTTTGTACTCACGGTAATTGCATTGCTT
CTTTCTTCCTTCTCATCGTCCTTTGATCTGAAATGCTATATTTTACAACTATAGTTCTGTACGGACCTTTCAATCTCTTA
TAATGCCTAAACATACTACATTAAGCTAGCATTTTGTTTATTTTCAGTGCAAACCTTTTGATGTTTATTCACAGCCGTA-
GTTGATGGTACAAATATGTGATGGCTATTATATGTTTATTATTTTGAACAGCCCTTTCTCCTTGTGGACTT-GCCA-GCT
CAGAAGGGATAATATGTATACTTGAAGTACATAATAGTGATATTACCATTCTCCATTAGTGAGAAAAC-ATCCGTGTAGT
TCCCGCTTTTGCCAAAGAAGATTTTATTATTTCTTCGTGGCAGCTG-TTTTCTATTTCTCGTAAATATTAATCTATGTGG
AGTTGTTGACTACCTTACAAGTAAAAAGATAAATTTACCCTTCTTACTAGGGAAGGTTACTATTATGAATAGTAATTGAT
TGGTGTACCATTACTAACATTTGCTCTGTTTTCTGGTGATCATCTTCATTAGTAGTGCTGTTCTAAATATACTCCCTCCG
TCCGGTAAAGAGTGTACATCTAGAAGTTTTAGGACAAATTATGGAGTTGAGTAAAAAATGCATTGGAAAGGTGCAAACCA
CCATCTCTCTCCTTTTTAATTACCCAACCCCCAATGAGCTAAGTGCATGTAGAAATTAAGAAGACTATGTGTAGATTGCT
ATTGGTCTTGATTACCGTGTGGTGAGAGAGAAGTATTTTTTTCCTACTTTAAAGTACATTGGGAAGATAGAAGTACACTC
TTTGGTGGACAAAATTTGAAACTAGATGTACACTCTTCACCGGACGGAGGGAGTATATGG--------------------
--------------------------------------------------------------------------------
---------------------------------TAAATTAGACTTGCATCTGCCAAAAACAAGACTTCCACACAATTTTC
TTCCCACCACAACACACCGAACACGAGTGTGTTTATATTCTTGTTGGCTGTGAACGTTAAGGACCCCCCACATTATCTTT
CTAAACAGCGTTTGCTTTGTTATGCAGTATATCCACATCATCAGAGGAGAGGAGTTGTACCGCCTTGCTAGGGACTACAC
CAGATACCTCGTCACTGGCAAGAGAACGTCCCGGCTGAAGCGTGCCATGCTTAACTGGCGTGATTTCTCAGATAGCATCA
CAAAGAATTTCAGCACACAAGACGATGTGTATCAAAGCCCGGTCGCTTCTGAAGCCATGTGGTGGCAACAGCCCCAGAAG
CTGGTTCATCATCTCGGTGACCTTTTCAGAGGCAACCTGCGTCCACATGCCCAGGAATCTTAAACCCTAGCATTCCACGG
TTGCCTTCGAATTTCCACCTCAGAAACTTCTGTTTCTGACCATCTAGTTTATGCTAGTGCTAAGTAAATCGACGCAACTA
GACGATCAGCTGTTGATTCTGGCGGATGGCGATTCTCGCCTAGT-GTACTGAAATTCATTCATATGATGTGATGCTGTCT
CTGGTCTGTACGTATTGACTACAGAACAGGAGGGGCAGGAGTTAATTCTTGTCAGCTTTGAAGGTCATCATGTAACGTAA
CATCATTGCTATGATCGTCTGCTCGTCAATGGGGTGCTGCA----GCAGCTGGCAGCTTGAATGCTGAATCTGATGGATC
AGACCTGC-AAAGGTCCAGGTACTGTCAGTTAGTCAATGCGGCAAAGAAGTGTACTGCCATCTATAAAGAATATTGTGGT
GTTTTCAGTGTGATTTGCTCTCCCATGGGCCATGGTAGTTCATTTTGTCTAGCCTATTTGAG-TTAACTGCAGAGACTTG
CAAGATGACCTTTCCATTTGTTGATGTCTTTATGTA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr2B_571
GATTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TTTTGGTCTGTTGGCGTGAAGTAGGCCCAGAACTAACCAACCAGCCCAAACGGGCTAC
ATTGTACTAGTACACTGTACAGTACGGTTGTACGAAAAGGGTCCCCCTCTGTAGCGGAAAAAAACCGACGACGCAATCCA
ATCCTTCTTCTCCCCAGTCCGCCTCCCTCCGCAGTCCCCGCTCTCCGCCCACCGGAGAGCTCGTCGCGGCGCGGCGCGGC
GGAGCCGAGCTCTACTCCTCTTCCCGTGCCTTTTTTTCCTCTCCCTCCCGAGTCCTCCCGACCTA-CCGACGCGGCTCTG
AATCTCTTCTGTAGCATATCCCACAGGCTACAGCTGACGCCTCGATCCCGCCTCCGCCCCCACACGATCCGCCGTCACCG
TTCTTCCTCGCC-GGGACGTCGTGTTCCTGCTGTATCCACCCCGTCCGCAGTCTTTGGCCATTGGGTTTTGAGGTATGAG
GTTTTACCCTCCACTCCAGCGATTAGATTAATCCTACTGACCTTCACAATTTCCGGGTGTCCTGGTGCGCACCCGGCACA
CCATCTAGATCTGCCGCCTGGCTGTCAACCTATGGGCTGTACGTTGTAGGGC-TTTGCTTTGCCCGTGGCATGATTTTCT
GCTTATTGGGTAGCAC--GTACATTTTAATTTTACCAGGATTCATGTT-AAAGAGTATCGGGAATACAAGGGTAGAATGC
TGCACTTCAGCCTGCATTGGTGTTAAAGTGTGATCTCATAACGGCTGGCTGTTGT-----ATTT----------------
---------GCAGGCTTAGAATTCCTATAA--------------------------------------------------
--------------------------------------------------------------------------------
---------------------AATTTATTTCAGGTGGGGCTCATAGGCTTCACCTGATCTCCATCATAATCCTCTCTGAA
CATCGGGAATTTTGCTCTACCTGGAAATTCCTTTTTCTTCTGCCCAAAATCCTTTCGCGCAGACTCAGTTCATTGTTTGG
GAAATTGTTGACAACATACATGCTTAGTTTAGTTCGTACCTCTTAGCATTAGGGGATTGCGCTGGCCTATTCGTTCTATA
GCAAGATTGTGACTTCTGGTGAATCATCTTGAGCACTGACTACATGTTATGCAAAACGGAGAAATTTATTCTTTTGAATT
AGATTAGTTCAATTGATACTGTTCTAGTGTTGTAGGGTTGTGGATATTTGACATTCTTCTTCCTAATTCAGTATGTAACC
ATTCCTATTTTTAACCTCCAGATTTGGCTCTGGTTAATTCTAGAATTCAAGAAGTTGGAAACATGAGCTACTGCCAAGCT
ACAACGTACAAGCCTCTTGGTGGGCTCACTTTGGACAGACCATTAGGCCTTGGGAGAACTTGCAGAATACTTCCTCAACA
TCATTCTGTATGGCAACATTTTTCTAGATCTTGCAAGCTGCAAGAGAAAGTATATCCAAGGCTTGTTGTTGCTGCTTGCC
ATAAGAGGCTTGGTCCTGTATATGCCTCAAGTGGGAAGGGAAACCT------------TGATGTAAGTAGCATTCACAGC
TTTCTTA------------------CTTTGTGATTGGTTTTCTATTGGAAACTTGCAACCTCCTTGCAGCTTAGCAAATT
TGTCAAGTTTGACTTTGTTTGGGACAATGGAATTTTCTTATTGATGTTGTAGGAATGCTTTAGTTTCAGGAATTCCTCTT
TGGGAAATAGTGATACGGTGTAAAATGGGGTGTGCTAGGCAGTTGATATGCTACACACCAAGCATATTTAACACATCAAG
GTTGTTAGGAACAATTGCTCATGTGGAATCATCTGCTACATTTACTGTTGCTTTCTTTTCAGCCATTCTCTATGGAATCT
TTGAACAAAGCAATGGATGGAGCAAAAAAGCAACAGTCTATACAAGGCTTCCTGATGGAGCAAATGGCTAAGATTACAGG
ACAGGGGTCTGGTGGAAATGGAGGGAATAATAACCGTTATGGAGGCAGCGGTGGTGGTCCTGATGGCCCAGATGACGAAT
CTTTCACGGATTCATTGTATGAAGTGGTCCAAGTTGTGTTAGCAACTGTTGCTTTTGTACTCACGGTAATTTCATTGCTC
CTTTCTTGCTTATCATTGTCCTTCATTCTGAAATGCTATATTTGT-AACGATAGTTCTGTGCAGATTTTTCAATCTCTTA
TAATGCCTGAACATACTAG-TTAAGCTAGCATTTTGTTTAGCTTCAGTGCAAACTTTCTGTTGTTTATTCACAACCATAA
GTTAATGGTACAAATACATTATGGCTATTATATGTTTATTGTTTTGAACACCCCTTTCTCCTTGTGGACTTAGCCA-GCT
CAGAAGGGATAATGTGGATACTTGAAGTACAGAATAGTGATATTTCCATTCTCCATTAGTGAGAAAAC-ATCTGTGTAGT
TCCCGCTTTTGCCAAAGAAGATTTTATTATTTCTTTGTGGCAGCTG-TTTTGTATTTCTCGTAAATATTAATCTATGTGG
AGTTGTGGACTAACTTACAAGTAAGAAGATAAATTTTACCTTCGTACCAGAGAAGTTTACCAGTAGGAATGTTAGTTGAT
TGGTGTACCATCAGTAACACGTGCTCTGTTTTCTGGTGACCATCTTCATCGCTAGTGCTGTTCTAAATATA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TATGG--------------------
--------------------------------------------------------------------------------
---------------------------------GAAACTAAACTTGCATCTGCCAAAGACAAGACTTCCGCCCAAATCC-
-------------------------------TTTTTATTCTTGTTGGTTGTGAA----AAGGA-CCCCCACATTATCTTT
CTAAACAGCGTTTGCTTTGTTATGCAGTATATCCACATCATCAGAGGAGAGGAGTTGTACCGCCTTGCAAGGGACTACAC
CAGATATGTCGTCACTGGCAAGAGAACGTCCCGGCTGAAGCGTGCCATGCTTAACTGGCGTGATTTCTCAGATAGCATCA
CAAAGAATTTCAGCACACAAGACGATGTGTATCGAAGCCCGGTCGCTTCTGA-----------------AGCCCCAGAAG
CTGGTTCATCATCTCGGTGACCTTTTCCGAGGCAACCTGCGTCCACATGCCCAGGAATCTTAAACCATAGCATTCCACGG
TTGCCTTCGAATTTTCACCTCAGAAACTTCTGTTTCTGATCATCTAGTTTATGCCAGTGCTAAGTAAATGGACGCAACTA
GACGATCAGCTGTTGTTTCTGCCGGATGGCGATTATTGCCTAGCAGTACTGAGATTCATTCATATGATGTCATGATGTCT
CTGTCT-----GTATTGACTACAGAACAGGAGGGGCACGAGTTAATTCTTGTCAGCTTTGAAGGTCAT---GTAACGTAA
CATCATTGCTATGGTCGCCTGCTCGTCAATAGGGTGCAGCA----GCAGCTGGCAGCTTGAATGCCGAATCTGATGGATC
AGAACCGCAAAAGGTCCAAGTACTGTCAGTTAGTCAATGCGGCAAAGAAGTGTACTGCCTTCTATAAAGAATGTTGTGGT
GTTGTCAGTGTGATTTGCTCTCGCATGGGCCATGGTAGTTCAGTTTGCCTAGCCTATTTGAGTTTAACTGCAGAGACTTG
CAAGATAACCTTTCCCTTTGTTGCTGTCTTTATGTACTGTACTACT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>SNPs
S-SSS---S-S------S--------S--S---S-SSSSS-SSSSSSSS-------------------------------
---------S-S-----S-----------------------S-S----SS---------S---SS-------------S-
----S----S-------S--------------S----S--S---SS--------S-S-SSSSS-------S---------
--S--------------SS-------------------------------------------------------------
---SS----S-S--------SS-------S------S-----------S-------S-----------------S-----
SSSSSS------SS---------S-------SSS--S--SSSSSSS-----S--SS------------------------
S-----------------S-S-SS---SSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSS-------S--------S-S--
---------SS------S-----------------------------------------S------------S-------
-S--------------------------------------S--------------------S-S----------------
-------S--------S---------S-----S------------------------------S----------------
---------------------------------------S--------S-------------------------------
-------S--S----S-----------------------------------------------------S----------
------------S------------------------------------S------------------------------
--S-----------------S-------------S----------------SSS--------------------------
---------------S---------------------------------S-SS---------------------------
----------------S---------------------------------------------------------------
-------------------------------------------------------SSSSS--------------------
----S----S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
----S-----------S-----------------------------------S-------------S---S---------
---S------------S-------------------------------S-----------S------------------S
SS--SSS-SSS----------------------------------------------------S--S---S-------S-
-------------S------SSSSSS---------------------------------S------------------S-
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------SSSSSSSSSSSS----------------------
-------SSSSSSSSSSSSSSSSSS-------S-S--S-S--------------------------------------S-
----------S-S-------------------S-----------------------S-S---------------------
--S------------S-------------S------S-------------------------------------------
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-------------------------S--------SS-----------------------------S--------------
--------------------------------------------------------------------------------
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---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--S------S------S----------------S
--S--S---S-------SS----S-------S-S-----S----S----------S-----------------S------
-------SS--------SS----------S------------------------S----------------------S--
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------S-----------------------------------------------------------------
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--------------S-----------------------------------------------------------------
-------------------S--------------S---------------------------------------------
---------------------------S-------------SSSS-----------------------------------
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---S---------------S------------------------------------------------------------
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_395
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGTGTGGTTGGGCAATCCTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>reverse_1729
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------GTAGGGGATTGCACTGGCC-------------
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_704
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CCCCTCTGTAGCGGAAACAG----------------
--------------------------------------------------------------------------------
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>reverse_2674
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---------------------------------ACGTTATGGAGGCAGTGGTG---------------------------
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-----------------------------------------
>forward_1340
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------ACGGTTGGCTGTTGTGTTTG--------------------
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>reverse_3659
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----------------------------------------------------------TCCCTCCGTCCGGAAATACT--
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_3118
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----------------------------------------------------------GTGAGAAAACCATCCGCGTG--
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>reverse_5120
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GTCCCCCTCCCTGAATTCA-------------------------------------------------------------
-----------------------------------------
