>input_sequence_27954
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----------------------------ATGATGAGAGCTCCTCCTCGGCTACTGTCGCCTCCTTCCTCCGCCACGGCTC
CTCACCTCCTCCTCTACGCTTCCTCCGCGGCCTGCCGCCTCCCTCCCTCCGCGGCCGCCGTCGCCCGCTCCGTCTCCGTC
TCCACCACCACCGTCGTCGACGCCCCGGCCCCCGCCGCCGAGCCGGGCTCCTCCGACTCGGCCTCC------------GC
CACGCCGCGACGCCGCCTCATCCTCCTCCGCCACGGGGACAGCGCGGTTGGGGAACGCTTCACCAGAGGTATATATATAC
ATATC---------------------------------------------------------------------------
--------GTACGTGGCAGGCAGAATCGTTCAAAGAGTGTAGGTG--CAGCTTCTTTGACGACTTTTCCGTTCAAAGAGT
TGCCTGGGCG-CTTGAGCTCCC-AATACTTTGGGGGTACTATCAATTAACTCTCACATTGGGTAACATCATTGGTGCTTT
GGGAGTTTGGGTGTCGTAGAGGTTATGGAATGGAATTGTAACACTGGGACTATTACGATACACTAAACTTGTA---GTCT
GTTATACTTGAGTTAAAATGTCAGGTTAAAATTCATGATATTATGAATAAGGGGTTTCGTAAATTAGTTGGACGTCGAGC
ACCAAATGAGAAATCAGGGATCAAGAACATTAAACGGGGTCAGCGTGTTTTTATGCGACAGACTTCGGTCAGCATTTTAG
TCTGGTTCTATGTGCCATTATA-CAATTTTAATCTGTAATTTAATTTAGTTCTTCTCTTTACTTTTCACATGATACTGT-
TGTACTCTTGTTTAGCTGCAGTGCTACAAGAAACCTAGATGCATTCCTTCTTTGTGGTCGCTGGCCTTTTGC---TTCAT
TCTTGAAAACAACATC-TCATATTGCCATCAATGACAGATCATGACAGGCCACTGAGCAAAGCTGGAAGAGCTGATGCAA
TAAGCGTTTCTGATAAATTCCATCAAATGGGATGGATACCTGAGCATATCCTATGCAGGTACATCCTTATCTTGTGCAGA
ACAATGTGTACACAGAATAGGGTTTAACGACAGCAGTAGGCGTGTAATGTAGGAGCACTTCAAGGTCCAATTTGGTTGCC
CTCGTATTTGTTACTAATTGTGTGGGTGGGTCAAGCAGTTTTAGAAAACTGAAACTGAGGAGGTCCCATTAGAATGCTGG
ACTTTCACATTAACCAGTTCTTTCCCATTGGGATAGGGAAATTTTTGGGTTCTAATTTCTAAATGGGGTCTGAAATCATG
TATTCAAGCCACAAGTGTAAATGTTGTTTCTCCGTGATTCACTTAGATAAGCAGTGGATAATGACATATATTACATCAAA
ATGAACATATTACAAGGGGTTACTTTTCTATTCTTTAGTTTCATCTTTTTGTGCTATTTGAC-TTTGGAGAGACCGAGAG
ATACTTTCATTTGAAAATGCCAAATTGTAAGCTATGTCTTTGAAGGTGACGTAAAATCACCTACTTTGATTTACTCATAT
GTGCCTTAATGGAGCATGTCATGCCATTCATACCTTCCTAAACTGTTTGTGAACACAGTGATGCAACTCGTACAAAGGAA
ACTCTTCAGATCATGCAAGAGCATGTTCAAGGATTGTCTCAAGCACTTGTGCATTTCATCCCAAGTTTCTACTCGATTGC
TGCAATGGATGGTCAAACTGCCGAGCACTTGCAAAAGGCAATTTGTGAATATTCAACTGATGAGATACTAACGGTGATGT
GAGTCTGCTATTATTTATTCTTCATTATGCTATGTTCTCCGAAGTATGCTCAGACTACATAGTCACTTCCTTCTAAGCAC
CTGTGCATGATATCTCTGAGAGTTGCTAGGCCTGTTTTTGATGCTTTTGTAGAATAAAATTTCAGGTGCATGGGACATAA
TAAAGGATGGGAAGAAGCAGCCTCTATGTTTTCTGGTGATTCCGTGGTGCTCAAGACGTGTAATGCTGCATTGCTAGAAG
CTGCTGGGAAATCATGGGTTGAGGTTAGTATTATTCTGATGCCTG-----------TGCTTCTCTTTTTAACCCCTTGAT
AGTACTGCGATGTGCCTACCATCATCATGGTTGCCAACAATGCCAATCCAAAAACTGATTGTGCAAATGTATAAATTACT
CCTAATCCTATATTTTTCCTATACAGTTGCTGATTTCTAGCTAATGTGGAATTTTAAATGATGCAAGCAGACTATTCACT
GGTGATTTTCAGCTAGGCGGATCCTTTAATTCTGCAGTACTCCCTCTGTAAACTAATATAAGAGCATTTAGATCACCAAA
GTAGTGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTTGTTTTTGTGAGTCATGTGAAAAGCACACATTAAAG
GCAATTTAGAAA-GCCAAGTATGACTAATGTTACTGTCTGTTTGAAGGATACCTGAATGAGACTACTCAGGAAAATATAA
AAGCTTTTGGCAGTACAAAGAATTTCTGAAAATGCTTGTGTTTTTTTCTTTGAAAAGTATATTAGTTCATGTTCATGTTC
AAT-------------------------GGGAAATCAAATCACCATGTGGCTAATTGAAATGGTCAAGTATTATCACCAT
ATCTGAAGTATTTTAGAAACAATGACCAGTTTCATGCTGTATTGGTCATGATGTGGGTTCATT-----------------
--ATACTCTTCTCCATCAAACAAAATGATGTATAGCTTCATAGTGCACCATTTTTCATGAAATAAAAAT--------GCA
GATAAATTGGCAGAAATTTGACCGATTTTCTATCGTCATGATATGCAGGCTTTTTCGCAGGCTGGCCTTGGGGGGTGGAA
GCTTCATGGCATTGTAAAGCCATAA-------------------------------------------------------
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>chr5A_1_TraesCS5A01G174800
CCCGACTGCGTGCCCGACTGAGTGTACGTGCCCGGCTGAGTGGACTCTGAGTCATCCACCTACCCGCCCTCGTAGCAGCC
TCCGCCTCCGTTATGGATCATCTCAAACATCTCTCTGTTTGCGTCGTCATACGCCGGCTTGCCCGGTTGAGACATACTGG
CAAACAGAGAGCGGGCGCTGAGCTGCTCCACGCTTGTCGTCCGCATTCAGGTAAGCTTCAGCAATGTAGATGCGGAGAAA
AGGAGCCGCGTCGCATTGACATCGAGGCAATAAGGCATGTGCCCGGCGACAGATGTCGGGGGCTACCTGCCGAACTGTTG
GGTGGCGTAGAAGTATGGAGGCATCTATTGATCCGTCTAGGACGACATCTTTACGGACGAAGACAGTGGCGGTGCCCCGC
GTCCCAGGCCCCGCCCTGCACCACGCGCCCCCTTCATGTTCGCCGCCACGACGACCGCCCCCGCCGCCCTTCTTTTTGAG
CGTAGCCACCTCCTTTGCCTCCTGTTTGAGGCGGCGTTCTTACCATGTCGCCGAGTTGATCTTTCACGGGGATGAAAGTG
GGGCTGCATAGTTGAGGGTTGGTCGTGAGAGAAACCATAAGGGTGGTGAGGGAGAGAGGTGGAGGGTGTG----------
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------------------------------------------------GTGTGAAAGTTCGGGACTGCTTTAAAGTTTGT
GTGACCTAGGAAACGCATACAGTGG--------AAGCAACCAAATGTCTGTTGGGCCTGGTGAGACTACCAAACGAGGTC
CCTA-AAAAAAAAAGGGCTACCAAACGAGTTTCTGTACCCTGGAAATAGAAATATTGTTGTGTCACTCACCGAAGAAATA
TTGGTCTGTCGCTCACCAGTCAGGAAAAGAACAGAGGTCACAGCATCTTGGCCAGAGTTCGCAAGCCCGTCATCACTCAT
CAGCAACCACGCCATCGTCCTTGCCTGTTCCTTCTATCCATCCGTTCCGCTCTCCCTTCT-CCATCCCATGTAACCAAAT
CAGCTCAGCTCAGCGACAACAGCGGCAGATGATGAGAGCTCCTCCTCGGCTACTGTCGCCTCCTTCCTCCGCCACGGCTC
CTCACCTCCTCCTCTACGCTTCCTCCGCGGCCTGCCGCCTCCCTCCCTCCGCGGCCGCCGTCGCCCGCTCCGTCTCCGTC
TCCACCACCACCGTCGTCGACGCCCCGGCCCCCGCCGCCGAGCCGGGCTCCTCCGACTCGGCCTCC------------GC
CACGCCGCGACGCCGCCTCATCCTCCTCCGCCACGGGGACAGCGCGGTTGGGGAACGCTTCACCAGAGGTATATATATAC
ATATC---------------------------------------------------------------------------
--------GTACGTGGCAGGCAGAATCGTTCAAAGAGTGTAGGTG--CAGCTTCTTTGACGACTTTTCCGTTCAAAGAGT
TGCCTGGGCG-CTTGAGCTCCC-AATACTTTGGGGGTACTATCAATTAACTCTCACATTGGGTAACATCATTGGTGCTTT
GGGAGTTTGGGTGTCGTAGAGGTTATGGAATGGAATTGTAACACTGGGACTATTACGATACACTAAACTTGTA---GTCT
GTTATACTTGAGTTAAAATGTCAGGTTAAAATTCATGATATTATGAATAAGGGGTTTCGTAAATTAGTTGGACGTCGAGC
ACCAAATGAGAAATCAGGGATCAAGAACATTAAACGGGGTCAGCGTGTTTTTATGCGACAGACTTCGGTCAGCATTTTAG
TCTGGTTCTATGTGCCATTATA-CAATTTTAATCTGTAATTTAATTTAGTTCTTCTCTTTACTTTTCACATGATACTGT-
TGTACTCTTGTTTAGCTGCAGTGCTACAAGAAACCTAGATGCATTCCTTCTTTGTGGTCGCTGGCCTTTTGC---TTCAT
TCTTGAAAACAACATC-TCATATTGCCATCAATGACAGATCATGACAGGCCACTGAGCAAAGCTGGAAGAGCTGATGCAA
TAAGCGTTTCTGATAAATTCCATCAAATGGGATGGATACCTGAGCATATCCTATGCAGGTACATCCTTATCTTGTGCAGA
ACAATGTGTACACAGAATAGGGTTTAACGACAGCAGTAGGCGTGTAATGTAGGAGCACTTCAAGGTCCAATTTGGTTGCC
CTCGTATTTGTTACTAATTGTGTGGGTGGGTCAAGCAGTTTTAGAAAACTGAAACTGAGGAGGTCCCATTAGAATGCTGG
ACTTTCACATTAACCAGTTCTTTCCCATTGGGATAGGGAAATTTTTGGGTTCTAATTTCTAAATGGGGTCTGAAATCATG
TATTCAAGCCACAAGTGTAAATGTTGTTTCTCCGTGATTCACTTAGATAAGCAGTGGATAATGACATATATTACATCAAA
ATGAACATATTACAAGGGGTTACTTTTCTATTCTTTAGTTTCATCTTTTTGTGCTATTTGAC-TTTGGAGAGACCGAGAG
ATACTTTCATTTGAAAATGCCAAATTGTAAGCTATGTCTTTGAAGGTGACGTAAAATCACCTACTTTGATTTACTCATAT
GTGCCTTAATGGAGCATGTCATGCCATTCATACCTTCCTAAACTGTTTGTGAACACAGTGATGCAACTCGTACAAAGGAA
ACTCTTCAGATCATGCAAGAGCATGTTCAAGGATTGTCTCAAGCACTTGTGCATTTCATCCCAAGTTTCTACTCGATTGC
TGCAATGGATGGTCAAACTGCCGAGCACTTGCAAAAGGCAATTTGTGAATATTCAACTGATGAGATACTAACGGTGATGT
GAGTCTGCTATTATTTATTCTTCATTATGCTATGTTCTCCGAAGTATGCTCAGACTACATAGTCACTTCCTTCTAAGCAC
CTGTGCATGATATCTCTGAGAGTTGCTAGGCCTGTTTTTGATGCTTTTGTAGAATAAAATTTCAGGTGCATGGGACATAA
TAAAGGATGGGAAGAAGCAGCCTCTATGTTTTCTGGTGATTCCGTGGTGCTCAAGACGTGTAATGCTGCATTGCTAGAAG
CTGCTGGGAAATCATGGGTTGAGGTTAGTATTATTCTGATGCCTG-----------TGCTTCTCTTTTTAACCCCTTGAT
AGTACTGCGATGTGCCTACCATCATCATGGTTGCCAACAATGCCAATCCAAAAACTGATTGTGCAAATGTATAAATTACT
CCTAATCCTATATTTTTCCTATACAGTTGCTGATTTCTAGCTAATGTGGAATTTTAAATGATGCAAGCAGACTATTCACT
GGTGATTTTCAGCTAGGCGGATCCTTTAATTCTGCAGTACTCCCTCTGTAAACTAATATAAGAGCATTTAGATCACCAAA
GTAGTGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTTGTTTTTGTGAGTCATGTGAAAAGCACACATTAAAG
GCAATTTAGAAA-GCCAAGTATGACTAATGTTACTGTCTGTTTGAAGGATACCTGAATGAGACTACTCAGGAAAATATAA
AAGCTTTTGGCAGTACAAAGAATTTCTGAAAATGCTTGTGTTTTTTTCTTTGAAAAGTATATTAGTTCATGTTCATGTTC
AAT-------------------------GGGAAATCAAATCACCATGTGGCTAATTGAAATGGTCAAGTATTATCACCAT
ATCTGAAGTATTTTAGAAACAATGACCAGTTTCATGCTGTATTGGTCATGATGTGGGTTCATT-----------------
--ATACTCTTCTCCATCAAACAAAATGATGTATAGCTTCATAGTGCACCATTTTTCATGAAATAAAAAT--------GCA
GATAAATTGGCAGAAATTTGACCGATTTTCTATCGTCATGATATGCAGGCTTTTTCGCAGGCTGGCCTTGGGGGGTGGAA
GCTTCATGGCATTGTAAAGCCATAAAGTGATTAAACATTGTAGCTAAAGCTAGATGCAA--TTTTCGTAGTATTTTTGTT
CTCATTTTGCCTCGTGTAGCTATGATTGAATGTTGTTGAAGTTATTGATGTGCATAGATAGATGAGATCAATGCATTTCA
CCAAACCTGACAAGACTAA---------AAAAAAGACCACGTCGCTCTCGCCCAGGGCTTTTCTTTCTTTTTTTCCTGAG
GAAACTTCCGTTCTATCCAT---GCCATGGTAGTAC---AAAGAACATAAAAAAACTAAAA---AAATCAATGTCTGCAG
ACCACCTAGCGATGACTACAAGCACTTTAGAGAGCTGGAGGCGCGTCGCCGTCATCGTTCCTCCCTCGTTGAAGCCGGAC
CAAACTTGTTGTAATAAACAGTTGGGAAGTTGTCGTGCTAAGGACATCTCCAAACGCTGAGCCACAAATTTGCTCTGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGAGGCAGTCATCCAATGTTGTCCATGTACATTTCAACCGTTTGAACCAACCGGATGAAATTCATGCAAATACGA
CGAATTTCATGTAAACCGGATGAAATTTATTACATTTCGAAGATTTTTCACATGAACCGGACAAAATTCATTACATTGTT
TGTATAAACCGCCAAACCCTACTCTAAATGATCGTCCGTGCTAATTCCCCATGTCTAGCCATGAGCCCCGAGAACTAAAG
CTCTG
>chr5B_1
CCCGACTGCGTGCCCGACTGAGTGTACACTCTCGGCCGCGTGGACTCCGAGTCATCCACCTACCCGCCCTCGTAGCTGCC
TCCGCCTTCGTTATGGATCATCTCAAACATCTCTCTGTTTGCGTCGTCATACGCTGGCTTGCCCGGTTGAGACATATTAG
TGAACAGAGAGCGGGCATTGAGCTGCTCCACGCTTGTCGTCCGCATTCAGATAAGCTTAAGCAGTGTAGAATCGGAGAAA
AGGAGCCGCGTGGCGTTGACGTCGAGGCAATAAGGCATGTGCCTGGCAATAGATGTCGGGGGCTACCTACCGAACTGTTG
GGTGGCGTAGAAGTAGGGATGCATATATTGATCTGTTTGGGACGACATCTTTACGGACGAAGACAACGACGGTGCCCCGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGAAAGTCCGGGACTGCTTTAAAGTTTGT
GCG-----------------------------------ACCAAATGTCTGTTGGGCCGGC-GAGACTACCAAACGAGGTC
CT-----AAAAAAAAGACTACCAAACGAGTTTCCGTACCCTGGAAATAGAAATATTGTTGCGTCACTCACCGAAGAAATA
TTGGTCTGTCGCTCACCAGTCAGGAAAAGAACAGAGGTCAGCAGCATCTACT----GTTCGCAAGCCCGTCATCACTCAT
CAGCAACCACGCCATCGTCCTTGCCTGTTCCTTCTATCCATCCGTCCCGTTCTCCCTTCT-CCATCCCATGTAACAAAAT
CAGCTCAGCTCAGCGACAACAGCGGCGGATGATGAGAGCTCCTCCTCGGCTACTGTCGCCTCCTCCCTCCGCCACGGCTC
CTCACCTCCTCCTCTACGCCTCCTCCGCGGTCTGCCGCCTCCCTCCCTCCGCGGCCGCCGTCGCCCGCTCCGTCTCCGTC
TCCACCACC---GTCGTCGACGCCCCGGCCGCCGCCGCCGAGCCGGGCTCCT------------CC------------GC
CACGCCGCGACGCCGCCTCATCCTCCTCCGCCACGGGGACAGCGCGGTTGGGGAGCGCTTCACCAGAGGTATATAT----
--ATC---------------------------------------------------------------------------
--------GTACGTGGCAGGCAGAATCGTTCAAAGAGTGTAGGTGCGCAGCTTCTTTGATGACTTTTCCGTTCAAAGAGT
TGCCTGGGGCACTTGAGCTCCC-AATACTTTGGGGGTACTATCAATTAACTCTCACATTTGGTAACATCATTGGTGCTTT
GGGAGTTTGGGTGTCGTAGAAGTTATGGAGTGGAA-TGTAACACTGTGACTATTAAGATACACTATACTTGTA---GTCT
GTTATACTTGAGTTAACATGTCGGGCTAAAATTCACGATATTATGAGTAAGGGGTTTCGTAAATTAGTTGGACGTCGAGC
ACGAAATGAGAAATCAGGGATCAAGAACATTAAACGGGGTCAGCGTGTTTTTATGCGACAGGCTTCAGTCAGCATTTTAG
TCTGGTTCTATGTGCCATTTTA-CAATTTTAATCAGTAATTTAATTTAATTCTTCTCTTTACTTTTCGCACGATATTGT-
GGTACTCTTGTTTAGCTGCAGTGCTAAAAGAAACATAGATGCATTCCCTCTTTGTGGTCGCTGGCCTTTTGC---TTCAT
TCTTGAAAACATCATC-TCATATTGCCATCAATGACAGATCATGACAGGCCACTGAGCAAAGCTGGAAGAGCTGATGCAA
TAAGCGTTTCTGATAAATTCCATCAGATGGGATGGATACCTGAGCTTATCCTATGCAGGTACATCCTTGTCTTGTGCAGA
ACAATGTGTACACAGAATAGGGTTTAATGACAGCAGTAGGCGTGTAATGTAGGAACACTTCAAGGTCCAATTTGGTTGCC
CTCGTATTTGTTACTAATTGTGTTGGTGGGTCTCGCAGTTTTAGAAAACTGAAACT---GAGGTCCCATTAGAATGCTGG
ACTTTCACATTAACCAGTTCTTTCCCAGTGGGATAGGGAAATTTTTGGGTTCTAATTTCTAAATGGGGTCTGAAATTATG
TATTCAAGCCACAAGTGTAAATGTTGTTTCTCCGTGATTCACTTAGATAAGCAGTGGATAATGACATATATTACATCGAA
ATGAACATATTACAAGTGTTAC--TTTCTATTCTTTAGTTTCATCTTTTTGTGCTATTTAACTTTTGGAGAGACCGAGAG
ATACTTTCATTTGAAAGTGCCAAATTGTAAGCTATGTCTATGAAGATGACGTAAAATCACCTACTTTGATTTACTCATAT
GTGCCTTAATGGAGCATGTCATGTCATTCATACCTTCCTAAACTGTTTGTGAACACAGTGATGCAACTCGTACAAAGGAA
ACTCTTCAGATCATGCAAGAGCATGTTCAAGGATTGTCTCAAGCACTTGTGCATTTCATCCCAAGTTTCTACTCGATTGC
TGCAATGGATGGTCAAACTGCCGAGCACTTGCAAAAGGCAATTTGTGAATATTCAACTGATGAGATACTAACGGTGATGT
GAGTCTGCTATTATTTGTTCTTCATTATGCTATGTTCTCGGAAGTATGCTCAGACTACATAGTCATTTCCTTCTAAGCAC
CTGTGCATGATATCTCTGAGAGTTGCTAGGCCTGTTTTTGATGCTTTTGTAGAATAAAATTTCAGGTGCATGGGACATAA
TAAAGGATGGGAAGAAGCAGCCTCTATGTTTTCTGGTGATTCAGTGGTGCTCAAGACGTGTAATGCTGCATTGCTAGAAG
CTGCTGGGAAATCATGGGTTGAGGTTAGTATTATTCTGATGCCTG-----------TGCTTCTCTTTTTAACCCCTTCAT
AGTACTGCGATGTGCCTACCATCATCATGGTTGCCAACAATGCCAATCCAAAAACTGATTGTGCAAATGTATAAATTACT
-CTAATCCTATATTTTTCCTATACAGTTACTGATTTTTAGCTAATGTAGAATTTTAAATGATGCAAGCAGACTATTCACT
GGTGATTTTCAGCTAGGTGGATCCTTTAATTCTGCAG-------TCCGTAAACTAATATAAGAGTGTTTAGATCACTATT
TTAGTGATCTAAATGCTCTTACATTAGTTTACAGAGGGAGTACTTGTTATTGGTAGTCATTTAAAAAGCACACACTAAAG
GCAATTTAGAAA-GCCAAGT--GACTAATGTTACTGTCTGTTTGAAGGATACCTGAATGAGACGACTCAGGAAAATAGAA
AAGCTTTTGGCAGTACAAAGAATTTATGAAAATGCTTGTGTTTTTT-CTTCGAAAAGTATACTAGTCCATGTTCTGTGGC
ACATTCAAGCCCCCTATACTAAACTGAAGGGAAATCAAATCACCATGTTGCAAATCGAAATGGTCAAGTATTATCATCAT
ATGTGAAGCATTTTAGAAACAATGACCAGTTTCATGCTGCATTGGTTTCAATTTCATACCCAACTCATAATCGAACAGCT
CCATACTCTTCTCCATCAAACAAAATGATGAATAGCTTCATAGTGCACCATTTTTCATGAAATAAAAAT--------GCA
GATAAATTGGTTGCAATTTGACCGATTTTCAATCGTCATGATATGCAGGCTTTTTCGCAGGCTGGCCTTGGGGGGTGGAA
GCTTCATGGCATTGTAAAGCCATAAAGTGATAAAACATTGTAGCTAAAGCTAGATGCAA--TTTTCGTAGCATTTTTGTT
CTCATTTTGTCTCGTGCAGCTATGATTGAATGTTGTTGAAGTTATTGATGCGCATAGATAGATGAGATCAATGCACTTCA
CCAAACGTGACAAGACTTAC---------AAAAGAACCACATCGCTCTTGGCCAGGGTGGTTCTTTTTTTTTTGG--GAG
GAAACTTCTGATCTATCCATCATGCCATGGCATGGCCGTAAAGAACACAAAAGTAACAAAAATTAAATCCATGTATGTAG
ACCAGCTAGCGACGACTGCAAGCATTGGAGAGAATCGGAGGTGCGTCGCTGTCATTGCCCCTTCCTCATTTTAGCCGGAC
CAAACTTGTT-TAATAGACAGTTGAAAAGTCATCGTGCCAAGGAC-----------------------------------
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>chr5D_272
--------------------------------------------------------------------------------
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-------------------------------AAGGCATGTGCCCGGCGACGGATGCCGGGGGCTGCCTGCTGAACTGTTG
GGTGGCGTAGAAGTAGGGAGCCA------------TCTAGGACGACATCTTTACGGACGAAGATGGCGGCGGTGCCCCGC
GTCCCAGGCCCCGCACTGCACCACGCCCCT--------------------------------GCCGCCCTTCTTTTTGAG
CGTCGCCACCTCCTTTGCCTTCTGTCTGAGGCGGCGTTCTTGCCATGGCGCCGAGTTGATCTTTCACGGGGATTAAAGTG
GGGCAGCACAGTTGATGGTCGGTCATCGAAAAAACCATAAGGGTGAATG-----------GGGGGAGGTG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GTGTGGAAGTCCGGGACTGCTTTAAAGTTTGT
GCGACCTAGGAAACGCATACAATCCATGAATCCAAGCAACCAAATGTCTGTTGGGCCTGGTGAGACTACCAAACGAGGTC
CCTGCAAAAAAAAAGGACTACCAAACGAATTTCCGTACCCTGGAAATAGAAATATTGTTGCGTCACTCACCGAAGAAATA
TTGGTCTGTCGCTCACCAGTCAGGAAAAGAACAGAGGTCAGCAGCATCTACT----GTTCGCAAGCCCGTCATCACTCAT
CAGCAACCACGCCATCGTCCTTGCCTGTTCCTTCTATCCATCCGTTCCGTTCTCCCTTCTCCCATCCCATGTAACAAAAT
CAGCTCAGCTCAGCGACAACAGCGGCGGATGATGAGAGCTCCTCCTCGGCTACTGTCGCCTCCTTCCTCCGCCACGGCTC
CTCACCTCCTCCTCTACGCTTCCTCCGCGGCCTGCCGCCTCCCTCCCTCCGCGGCCGCCGTCGCCCGCTCCGTCTCCGTC
TCCACCACC---GTCGTCGACGCCCCGGCCGCCGCCGCCGAGCCGGGCTCCT------------CCGACTCGGCCTCCGC
CACGCCGCGACGCCGCCTCATCCTCCTCCGCCACGGGGACAGCGCGGTTGGGGAACGCTTCACCAGAGGTATATAT----
--ATACCGTACTACTCCCTCCGTTTCAAATTACTCGTCGTGGTTTTAGTTTAAATTTAAACTAAAACCACGATGAGTAAT
TTGAGGGAGTACGTGGCACGCAGAATCTACGT----GTGTAGGTG--AAGCTTCTTTGATGAATTTTCAGTTCAAAGTGC
TGCCTGGGCG-CTTGAGCTCCCAAATACTTTGGGGGT---ATCAATTAACTCTCACATTGGCTAACATCATTGGTGCTTT
G--------GGCGCCGTAGAAGTTACGGAATGGAATTGTAACACTGGGACTATTCAGATACATTAAACTTGTGGGCGTCT
GTTATACTTGAGTTAAAATGTCAGGTTAAAATTCACAATATTATGAATAAGGGGTTTCATAGTTTAGTTGGACGCCGAGC
ACGAAATGGAAAATCAAGGATCAAGAACATTAAACGGGGTCAGTGTGTTTTTATGCGACAGACTTGGATCAGCATTTTAG
CCTGGTACTATGTGCTATTCTAGCAATTTTAATCAGTAATTAATTTTGGTTCTTCTCTTTACTTTTGGCACGATATTGTA
TGTACTCTTGTTTAGCTGCAGTGCTACAAGAAACCTAGATGCATTCCTTCTTTGTGGTTGCTGGCCTTTTTGCATTTCAT
TCTTGAAAAACAACAGTTCATATTGCCATCAATGACAGATCATGACAGACCACTGAGCAAAGCTGGAAGAGCTGATGCAA
TAAGCGTTTCTGATAAATTCCATCAAATGGGATGGATACCTGAGCTTATCCTATGCAGGTACATCCTTATCTTGTGCAGA
ACAATGTGTACACAGAATAGGGTTTAACGACAGCAGTAGGCGTGTAATGTAGGAACGCTTCAAGGTCCAATTTGGTTGCC
CTCGTATTTGTTACTAATTGTGTGGGTGGGTCTCGCAGTTTTAGAAAACTGAAACT---GAGGTCCCATTAGAATGCTGG
ACTGTCACATTAACCAGTTCTTTCCCAGTGGGATAGGGAAATTTTTGGGTTC------CTAAATGGGGTCTGAAATTATG
TATTCAAGCCACAAGTGTAAATGTTGTTTCTCCGTGATTCACTTACATAAGCAGTAGATAATGACATATATTACATCGAA
ATGAACATATTACAAGGG-TTACTTTTCTATTCTTTAGTTTCATCTTTTTGTGCTATTTAACTTTTGGAGAGACCGAGAG
ATACTTTCATTTGAAAATGCCAAATTGTAAGCTATGTCTATGAAGATGACATAAAATCACCTACTTTGATTTACTCATAT
GTGACTTAATGGAGCATGTCATGTCATTCATACCTTCCTAAACTGTTTGTGGACACAGTGATGCAACTCGTACAAAGGAA
ACTCTTCAGATCATGCAAGAGCATGTTCAAGGATTGTCTCAAGCACTTGTGCATTTCATCCCAAGTTTCTACTCGATTGC
TGCAATGGATGGTCAAACTGCCGAGCACTTGCAAAAGGCAATTTGTGAATATTCAACTGATGAGATACTAACGGTGATGT
GAGTCTGCTATTATTTGTTCTTCATTATGCTATCTTCTCTGATGTATGCTCAAACTACATAGTCATTTGCTTCTAAGCAC
CTGTGCATG----CTCTGAGAGTTGCTAGGCCTATTTTTGACGCTTTTGTAGAATAAAATTTCAGGTGCATGGGACATAA
TAAAGGATGGGAAGAAGCAGCCTCTATGTTTTCTGGTGATTCAGTGGTGCTCAAGACGTGTAATGCTGCATTGCTAGAAG
CTGCTGGGAAATCATGGATTGAGGTTAGTATTATTCTGATGCCTGAACATAAATTATGCTTCCCTTTTTAACCCCTCGAT
AGTACTGTTATGTGCCTACCGTCATTGTGGTTGCCAACAACGCCC------AAACTGATTGTGCAAATGCGTAT-TTACT
-CTAATTCTATATTTTCCCTGTAAAGTTACTGATTTTTAGTTAATGTAGAACTTTAAATGATGCAAGCAT--TATTCACT
GGTGATTTTCAGTTAGGCGGATCCTCTAATTCTGCAGTAC----------------------------------------
----------------------------------------TACTTGTTATTGTGAGTCATGTGAAAAGCACACACTAAAG
GCAATTTAGAAAAGCCAAGTAGGACTAATGTTACTGTCTGTTTGAAGGATACCTGAATGAGATGACTCAGGAAAATAGAA
AAGCTTTTGGCAGCACAAAGAATTTCTGGAAATGCTTGTGTTTTTT-CTTCGAGTAGTATATTAGTCCGTGTTCTGTAGC
ACATTCAAGCCCCCTATACTAAACTGAAGGGAAATCAAATCACCATGTGGCAAATCGAAATGGTCAAGTATTATCACCAT
ATCTGAAGTATTTTAGAAACAATGATCAGTTTCATGATGT---------------GGTTCATT-----------------
--ATACTCTTCTCATTTGAACAAAATGGTGTGGG--TTCATAGTGCACCATTTTTCATGAAATAAAAATCTTGTTGAGCA
GATAAGTTAGCAGAAACTTGACTGAATTTCTGTCGTCATGATATACAGGCTTTTTCGCAGGCTGGCCTTGGGGGATGGAA
GCTTCACGGCATTGTAAAGCCATAAAGTGA--AAACATTGTAGCTAAAGCTAGATACAGTTTTTTTGTAGCATTTTTGTT
CTCATTTTGCCTGGTGTAGCTATGATTGAATGTTAATGAAGTTATTGATGTGGATAGATAGATGAGATCAATGCATTTCG
CCATACCTGATAAGACTCGCACACACACAAAAAAAACCACGTCTCTCTCGCCCAGGGCAGTTCTTTTTTTTCC-CCCGAA
GAAACTTCCGATCTATTCAACTTGCCATGGCAATAC---AAAGAATAACAACAC------------ATACATGTCTGTAG
ACCACCTAGCGACGACTACAAGCAC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>SNPs
---------------------------SSS-S----S-S--------S----------------------------S---
-------S----------------------------------------------S---------------------S-S-
SS--------------SS--------------------------------S-------S----S------SS--------
-----------S--S-----S-----------------------------------------------------------
---------------S--------S--------S--------------------------------S-------------
--------------S-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
---S----------------S----S---------------S-----S-------------------------S------
----S---S------S---S----S-SSS-S--------------SSSSSSSSSSSSSSS--S--SS-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-S-------------------S-SS-------------------------------------------------------
---S------------S----------------S--------------------------S-------------------
----------------------------------------SSSSSSSS-SSSSSSS------------------------
-------------------------------------------------S-------------------------S----
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
---------SSS------------------S---------------------SSSSSSSSSSSS----------------
----------------------------------------------------------------------------SSSS
SS------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------S----------------------------------S------------------------
-----------------------------------S--------------------------------------------
--S-----------------------------------------------------------------------------
-------------------S--------------S--------------------------------S--S----S----
--------------------------------------------------------------------------------
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S---------------------------S-------S----------S--------------------------------
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-------------------------------S--------------------------------------S---------
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-----------------S----------------S-----------------------SS------S------S--S---
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGGCTGCATAGTTGAGGGTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----
>reverse_2375
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------GCACTTCAAGGTCCAATTTGGT----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----
>forward_1092
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AGAGGTCACAGCATCTTGGC----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_2700
--------------------------------------------------------------------------------
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-----------------------------------------------------------GACTTTGGAGAGACCGAGAGA
--------------------------------------------------------------------------------
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-----
>forward_1923
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------TTAGTTGGACGTCGAGC
ACC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>reverse_3243
--------------------------------------------------------------------------------
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------------------------------------------CGTGGTGCTCAAGACGTGTA------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>forward_2433
--------------------------------------------------------------------------------
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------------ACTAATTGTGTGGGTGGGTCA-----------------------------------------------
--------------------------------------------------------------------------------
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-----
>reverse_4470
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATGTCTGCAG
ACCACCTAGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
