>input_sequence_27949
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-------------------------------------------------------ATGACGTCCAACCAGTTCGATCTCC
TCGGCGACGTCGACAACGACGACCCCTCGCAGCTCCTCGCCGCCGCCGCCGCCAAGAAGGCCGCCGAGCCCAAGCCCGCC
GCGC---------C---------CGCCGCCAAGCCCGGCTCCAAGCCGCCCGCCAAGACCCCGCCGCCCGGTGAGTGACC
CTCTCGGTTCGCTCTCTCTCCGATTCGATTGCTGGATGTGTCTTTCGACGCGAGCTTCCATTTCTGTTGCTCATGGTGTG
ATTCGATTGCTCGATTTGTGGCTGCAGCGGAGGAC---AGGGGCAACA---GGGACGGCGCCGGGCGCGGGAGGGGCGGC
CGCGGAGGCGGTGGCGGGGCCAGGACCGGCCCGCGGCGGGACTACGGCGACGCGGACGCCAACGGCGGCTTCGAGGGCGG
G---------GGCGGCGGCGGCGGCTATCCGGCGCCTCGCCTGGAGGACGGCGAGGGGAAGCAGGCGGAGAGGGGGCGCG
GGCCGCGCCAGCCCTACCGCGGAGGGGGCGGCCGCCGCGGGGGCTACTCCGACGGGCAGAACACGGACGAGTTCGGGCGC
CCGCACCGCTCCTACGAGCGCCGCAGCGGCACCGGCCGCGGCTTCGGGATGAAGCGCGACGGCGCTGGCCGCGGCAACTG
GGGGACTGCCACCGACGAAGGGTTCCCACAGTTAAGATTGATCCAATTAGTCTCTGGTTTCATGGCAAGATGCTGATACT
TTTTGCTGTTGTGATGTGTGGAGCTTGACGTTTCTTAT---GTGGCTGGTGGTGAT---CAGGGAAAATGTGGAGGCTGT
CAACACTGAGGAGACCCCTGCTGTGGCAGAGGATGAGAAGAAGCCCGAGGATGCGCCGCAGCCCGAGGCTGAGAAGGTCA
AGGAGGGTGCAGAGAATGAAGAGGAAGAGAAGGAAGCTGAGGAAGATAAGGTATATTTTTCAGAA-TTTGCCATCATCTG
ATTGATTTAAATTGTGTTGTGGTAGTTGTA-----TGGCGTGTACATTTTGTATTGGCGACAATGGTGATGGTAGCATTT
CTTGCTGGATTGGACAATCCAGATACTCCCTCCGATCCGAATTAAATGACGCAGTCTCTATACAATGGCGTAGTTGTCCG
TTTTACATTGTATTGAGGTTGCGTCAATTAATTCGGATCAGAGGGACTATCATGTTTTACATATGCTATTCTAGGGGTGT
ATTAATTCGGATTGGAGGGA-TATCATGTTTTACATATGCTATTCTAGGGATGTAACGTAATACAGTTACTCGACCAGTC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TAGATTTTTGCTGTACACCTGCTCGCGGGATAGCTACTTCTGTCACATTACAG-AATGGTTTGAATTAAGCTCTTTG
GAAACTGGAATTTTTTCCTCATCCTCCAGGCTAATCTTATTGTCAGCTTTTGTAGTTATCTTCTCATTCGTGCCCATTGC
TACATACTTCTGTCAGAATGTATTGCGTTGTTTTTTGTCGCGATTGATCACATACATTTTAGGGTTGTCTGACATCCATG
CCAAGCACTAACTAACCTCAGTGAACCATTTGATTTGCTGATGGCATCTAAATAAGTGGTAGATGAAATGCATATATACA
CGTACTGAAATATCAGTTTCTTTAATCGTCATTCACTTTGAAGGCTTACTTGTAATTTGGTTGGGAGTAATGAAATATGG
TTGATCCAGTGAGACTGACATTCTCAGAAATGAGTTGCCAGTGCTCAATTTCACCTAGGCAATAGTTGGTTCATATAACA
GCATCCTCTCT---GATGTGATGTACTCTTGTTTAATTTTATTTTGGCAATATCTTTTCCTAGAATTTCTGACTTCCTGT
TATTTAATTGAGATGT-TGAGTGCAATTTTGTTCCTTGTTTGTGGT------CCAGAATTCTTTGATATATTCCTGGGCT
TGTTTCTATTATGATGAAGGTGTGTTCAGTTACAGTGTCACTGCGCCTTCTCCATCTTCACCCTTCATTTTGGGGATGGC
TTATCATGACATATTCAACTTCTCTTGAGCTTTCTGGTGCTTCTGTGCTGTTGTCTGTACATGTTCTGCTTTTGCATTTG
TTTTCTGTACATGATCCAGGCATCTCATTACAAGTTTGAATAGGTTACCTGTGGCATGCTTGTGCTCTTTCTGATGCCTA
ATGTTTGTCCTGTGGCATGCTACACCTGTCATTGAAATAACTTGTACTTTGACCA------------------------T
ACAGGAGATGACCTTGGAGGAGTATGAGAAAGTGTTGGAGGAGAAGCGGAAAGCGATACTCGCACTGAAGGCTGAGGAGA
GAAAGGTTGAAGTTGACAAGGAGCTGCAGTCCATGCAGCAACTGTCAGTGAAGAAGGATGCTGAGGAAGTATTTATCAAG
CTGGTAAGTTGTACATCAGGCTGTCTTTCTTCTTCATGTGGTCATATTGATGCTAACTTTCAGCCACCACCCCTGGTGTA
GGGCTCTGACAAGGAGAAGAAGAAAGAAAGCACAGAAAGAGAGGAGCGTGCCAAGAAGGTATCCTGCGCATTTCTGTCCT
GTCCTGTT-ACTTTGGTCCGAGCAACTGGTGTATCTTCTACTAACCGTTATGCTG---TGTTTGCTCTGATGCTGCCTGT
CCCTGCCTGAAGTCCCTCAGCATCAATGAGTTCCTGAAGTCGGCTGAAGGCGAGAGGTACAATGGCGGGCGGGGCCGCGG
CCGTGGCTTCAGGGGACGCGGCGAGGCCCGTGGCGGGTACAACGGCGGCGGCGGTGGTGGCCGGCGACCAGCTGCTGCTC
CGGCGATCGAAGACCAGTCCCAGTTTCCGACGCTAGGTGGGAAGTGA---------------------------------
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------------------------
>chr1B_1_TraesCS1B01G468700
CTTCCATCTTGACGTGAATGCAAAATATGACATTGTTTGGAAACACTTCGTTGATGGGATTTACTCGGCAGCAACTGCAT
ACAAGGAACAATTCCTTGGTTTGACGCTATCTCCCATGGATACCATGGTTTGGAAAGCTTGGGCCCCTCCAAAGGTCAAA
TTATTCGCCTGGTTGGCTTTGCAAGACCGGATTTGGACCACCGACCTTTTGGAACAACGTGGTTGGCCAAATTGTGGACT
TTGCCCAGTTTGCAAGCGGGAGTAAGAAACGGGCATTCACCTTTTCGCCAAGTGCCGCTTCACTGTTAGGCTTTGGTGAC
TGGTCACTGAAAAGTCTAGGCTTGCGCACACGGACACTTTCAGTTGGCACCTTCAGAAGCAAAAACTGCGCGAGCGAATA
TATGAAAGTATGATTTAAAATTCCAATATAACATATGATTTGTGTGTGTGAAGTATTCAACCCATGAACAAAAACAGAAA
AATATGTTGCAAGATCAAAGTACAGCGGAGTGTATCGATGGAAAAAAAAAGTATTTGTGGCGAATGGGCTTGGTGGCGGC
CCATCAGCTCCGGAGGCCCGTACAAGAAGCCAGGGCAGGCCGACACCCACGCCCGAAGCCCACGACCGCCGTCCCAACAA
CCCACCCCCAAAATGACCAAACCGCCCCCAGCCCCCGCACCCCCCAC--CCCACGCACGCCCGTAATTACCCCTCTCCCC
GAGCCCCATTTCCGCCATTTCCCCCCCGCCCGCGGTCTGAAAACGGAGGCCAGCACACTCCGCTGTCACATCCCACACAC
TCCCACAGCTCCAGCAGCACAACACACAGCGGCTTCTTCTCCGTTGGCGGCGGCGGCTAGGGTTTTAC--------CA--
--CCTCCAAAACCCTAATCTTTCCATCCAATCCAATCCGTCCGTCGTCCATGCCGGCGGCCTCCTGCTAGATTCGC-TCA
CGCCGGAGTTTTTTTCAGCTAGTTTGAGTGCTTGGTGTGGTGCGGCGCGGCGGAGATGACGTCCAACCAGTTCGATCTCC
TCGGCGACGTCGACAACGACGACCCCTCGCAGCTCCTCGCCGCCGCCGCCGCCAAGAAGGCCGCCGAGCCCAAGCCCGCC
GCGC---------C---------CGCCGCCAAGCCCGGCTCCAAGCCGCCCGCCAAGACCCCGCCGCCCGGTGAGTGACC
CTCTCGGTTCGCTCTCTCTCCGATTCGATTGCTGGATGTGTCTTTCGACGCGAGCTTCCATTTCTGTTGCTCATGGTGTG
ATTCGATTGCTCGATTTGTGGCTGCAGCGGAGGAC---AGGGGCAACA---GGGACGGCGCCGGGCGCGGGAGGGGCGGC
CGCGGAGGCGGTGGCGGGGCCAGGACCGGCCCGCGGCGGGACTACGGCGACGCGGACGCCAACGGCGGCTTCGAGGGCGG
G---------GGCGGCGGCGGCGGCTATCCGGCGCCTCGCCTGGAGGACGGCGAGGGGAAGCAGGCGGAGAGGGGGCGCG
GGCCGCGCCAGCCCTACCGCGGAGGGGGCGGCCGCCGCGGGGGCTACTCCGACGGGCAGAACACGGACGAGTTCGGGCGC
CCGCACCGCTCCTACGAGCGCCGCAGCGGCACCGGCCGCGGCTTCGGGATGAAGCGCGACGGCGCTGGCCGCGGCAACTG
GGGGACTGCCACCGACGAAGGGTTCCCACAGTTAAGATTGATCCAATTAGTCTCTGGTTTCATGGCAAGATGCTGATACT
TTTTGCTGTTGTGATGTGTGGAGCTTGACGTTTCTTAT---GTGGCTGGTGGTGAT---CAGGGAAAATGTGGAGGCTGT
CAACACTGAGGAGACCCCTGCTGTGGCAGAGGATGAGAAGAAGCCCGAGGATGCGCCGCAGCCCGAGGCTGAGAAGGTCA
AGGAGGGTGCAGAGAATGAAGAGGAAGAGAAGGAAGCTGAGGAAGATAAGGTATATTTTTCAGAA-TTTGCCATCATCTG
ATTGATTTAAATTGTGTTGTGGTAGTTGTA-----TGGCGTGTACATTTTGTATTGGCGACAATGGTGATGGTAGCATTT
CTTGCTGGATTGGACAATCCAGATACTCCCTCCGATCCGAATTAAATGACGCAGTCTCTATACAATGGCGTAGTTGTCCG
TTTTACATTGTATTGAGGTTGCGTCAATTAATTCGGATCAGAGGGACTATCATGTTTTACATATGCTATTCTAGGGGTGT
ATTAATTCGGATTGGAGGGA-TATCATGTTTTACATATGCTATTCTAGGGATGTAACGTAATACAGTTACTCGACCAGTC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TAGATTTTTGCTGTACACCTGCTCGCGGGATAGCTACTTCTGTCACATTACAG-AATGGTTTGAATTAAGCTCTTTG
GAAACTGGAATTTTTTCCTCATCCTCCAGGCTAATCTTATTGTCAGCTTTTGTAGTTATCTTCTCATTCGTGCCCATTGC
TACATACTTCTGTCAGAATGTATTGCGTTGTTTTTTGTCGCGATTGATCACATACATTTTAGGGTTGTCTGACATCCATG
CCAAGCACTAACTAACCTCAGTGAACCATTTGATTTGCTGATGGCATCTAAATAAGTGGTAGATGAAATGCATATATACA
CGTACTGAAATATCAGTTTCTTTAATCGTCATTCACTTTGAAGGCTTACTTGTAATTTGGTTGGGAGTAATGAAATATGG
TTGATCCAGTGAGACTGACATTCTCAGAAATGAGTTGCCAGTGCTCAATTTCACCTAGGCAATAGTTGGTTCATATAACA
GCATCCTCTCT---GATGTGATGTACTCTTGTTTAATTTTATTTTGGCAATATCTTTTCCTAGAATTTCTGACTTCCTGT
TATTTAATTGAGATGT-TGAGTGCAATTTTGTTCCTTGTTTGTGGT------CCAGAATTCTTTGATATATTCCTGGGCT
TGTTTCTATTATGATGAAGGTGTGTTCAGTTACAGTGTCACTGCGCCTTCTCCATCTTCACCCTTCATTTTGGGGATGGC
TTATCATGACATATTCAACTTCTCTTGAGCTTTCTGGTGCTTCTGTGCTGTTGTCTGTACATGTTCTGCTTTTGCATTTG
TTTTCTGTACATGATCCAGGCATCTCATTACAAGTTTGAATAGGTTACCTGTGGCATGCTTGTGCTCTTTCTGATGCCTA
ATGTTTGTCCTGTGGCATGCTACACCTGTCATTGAAATAACTTGTACTTTGACCA------------------------T
ACAGGAGATGACCTTGGAGGAGTATGAGAAAGTGTTGGAGGAGAAGCGGAAAGCGATACTCGCACTGAAGGCTGAGGAGA
GAAAGGTTGAAGTTGACAAGGAGCTGCAGTCCATGCAGCAACTGTCAGTGAAGAAGGATGCTGAGGAAGTATTTATCAAG
CTGGTAAGTTGTACATCAGGCTGTCTTTCTTCTTCATGTGGTCATATTGATGCTAACTTTCAGCCACCACCCCTGGTGTA
GGGCTCTGACAAGGAGAAGAAGAAAGAAAGCACAGAAAGAGAGGAGCGTGCCAAGAAGGTATCCTGCGCATTTCTGTCCT
GTCCTGTT-ACTTTGGTCCGAGCAACTGGTGTATCTTCTACTAACCGTTATGCTG---TGTTTGCTCTGATGCTGCCTGT
CCCTGCCTGAAGTCCCTCAGCATCAATGAGTTCCTGAAGTCGGCTGAAGGCGAGAGGTACAATGGCGGGCGGGGCCGCGG
CCGTGGCTTCAGGGGACGCGGCGAGGCCCGTGGCGGGTACAACGGCGGCGGCGGTGGTGGCCGGCGACCAGCTGCTGCTC
CGGCGATCGAAGACCAGTCCCAGTTTCCGACGCTAGGTGGGAAGTGAAGGGGTCCGTGTCCCGTGCCCTGATCCGACTAG
CAGCGGCTCCTCGGTGGTTCGCTCCAGACTGTGTCCTTGTTGAGTTGTCAGTACTCAGTAGCGTGTCGTCGTTTCGCCTG
TCTGTCTTTTTGC-CTGTCTGTCTTTTTATCT-GTCGCCGTGTGTGTATCCCGTGTACACCTGAGGTGCACCC-------
-------ACCCGTGTCGTGTCTTGTTTTAGCCGCAGCTTATTCCGTTCATTTGGATAGGACAATGTCATGTATGAGATGT
TTTCCTGGTGCACTTGCTGCTCTTATCTGTGTCGTGTCTGCTTGGTTCAGTGATTTTGTTCAGCTGAGAATTATGTC-AT
CTTTCTTCCTTAGCCGTAGCTGTTTAGTAGGAGTGTTTGCTATGCATATTCTCTGTTGGAAAGTTATGCTGCCTGCCATG
GCAAGGCGTGCTTGTGCAAAGATTGTGCCAGGCCTGAGAAAAGATGTATGCAAATCACAACAGAAATGACATCAGTTTCT
CAAGCAGTGAGACCCCGCACAGTTCCTGTGTAGAAAACTTAAACTGAACGTATGCCAATCACGCATTGTATCAGTTCAAG
CACAGAAACTAGAGCTAAACAGAACTCGTCATAGTGCACTGCCCTATTGCTATTTTGTTAGCTTAAATTTGGTAATGCGG
CAGTGTGGAAGTAAAGGTAATGGAGAGAGCCCATACTCTTTTAAGTTTAGTGCACGGCTTAACTTTTTTGTCAGTGGAGC
AGCATAGGCAACCGGGCAGTATACAATGATCCGCACGAATTTCAGAGCGCTGCAGATTAGATTAACCAGCACATTAGTAC
TAATCAGGCTGGAAGGCACACCAACCCCCTCCCCCCCGCATACCATCAGGCATTGACGCTGGTCGTCGTCTTCTTCCTCG
GCCCAGGCCATCGCGATCCAGACCCATATCTCAATCCCTGCTCGCCGGCCGGCCACCGGTCCTGCAGAAGCACAACAGCT
AGTGGATCAAATTTGGGCAGGTAA
>chr1D_443
TGTTGTC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAGTATTCAACCCATGAACAAAAACAGAAA
ACATGC-TGCAAGATCAAAGTACAGCGCAGTGTATCGATGGAAAAAA--AATATTTGTGACGAATGGACGAGGTGGCGGC
CCATCAGCTCTCGAGGCCCATACACCAAGCCAGGGCAGGCCGACACCCACGCCCGAAGCCCACGACCGCCGTCCCAACAA
CCCACCTCCAAAATGACCAAACCACCCCCAGCCCCAGCACCTCCCAC--CCCACGCACACCCGTAATTTCCCCTCTCCCC
CAGCCCCATTTCCGCCATTTCCCCTCCGCCCGCGGTCTGAAAACGGAGGCCAGCACACTCCGCTGTCACATCCCACACAC
TCCCACAGCTTCAGCAGCACAGCACACAGCGGCTTCTTCTCCGTTGGCGGCGGCGGCTAGGGTTTTAC--------CACC
TCCCTCCAAAACCCTAATCTTTCCACCCAATCCAATCCGTCCGTCGTCCATGCCGGCGGCCTCCTGCTAGATTCGAATCG
CGCCGGAGTTGTACT----TAGTTTGAGTGCTTGGTTTGGTGCTGTGCGGCGGAGATGACGTCCAACCAGTTCGATCTCC
TCGGCGACGTCGACAACGACGACCCCTCGCAGCTCCTCGCCGCCGCCGCCGCCAAGAAGGCCGCCGAGCCCAAGCCCGCG
GCGCCGGCGCCGGC---------CGCCGCCAAGCCCGGCTCCAAGCCGCCCGCCAAGACCACGCCGCCCGGTGAGTGACC
CTCTCGGTTCGCGCTCCCTCCGATTCGATTGCTCGATGGGTCTTCCGATGCGAGCTTCCATTTCTGTTGCTCATGGTGTG
ATG--------CGATTTGCGGCTGCAGCGGAGGACGCGAGGGGCAGCCGGGGGGACGGCGCCGGGCGCGGGAGGGGCGGC
CGCGGGGGCGGGTTCGG---CAGGACCGGCCCGCGGCGGGACTACGGCGACGCCGACGCCAACGGCGGCTTCGAGGGCGG
GTACGGCGGTGGCGGCGGCGGCGGCTATGCGGCGCCTCGCCTGGAGGACGGCGATGGGAAGCAGGCGGAGAGGGGCCGCG
GCCCGCGCCAGCCCTACCGCGGAGGGGGCGGCCGCCGCGGGGGCTACTCCGACGGGCAGAACACGGACGAGTTCGGGCGC
CCGCACCGCTCCTACGAGCGCCGCAGCGGCACCGGCCGGGGCTTCGGGATGAAGCGCGACGGTGCTGGCCGCGGCAACTG
GGGGACTGCCACCGACGAAGGGTTCCCACAGTTAAGATTGATCCAATTAGTCTCT-GTTTCATGGCATGATGCTGATTCT
TTTTGCTGCTGTCATGTGTGGAGCTTGATGCTTTTTATTATGTGGGTGGTGGTGAT---CAGGGAAAATGTGGAGGCTGT
CAACACTGAGGAGACCCCTGCTGTGACAGAGGATGAGAAGAAGCCCGAGGATGCGCCGCAGCCCGAGGCTGAGAAGGTCA
AGGAGGGTGCGGAGAATGAAGAGGACCAGAAGGAAGCTGAGGAAGATAAGGTATATTTTTCAGAA-TTTGCCATCATCTG
ATTGCTTTAAATTGTGTTGTGGTAGTTGTA-----TGGCGTGTGCATTTTGTATTGGTGACAATGGTGATGGTAGCATTT
CTTGCTGGATAAGACAATCCAGATACTCCCTCCGGTCAGAATTAAATGACGCAATCTCTATATAATG---------TCCG
TTTTGCGTTGTATCGAGGTTGCGTTA------------------------------------------------------
ATTAATTCGGATCGAAGGGAGTATCATGTTTTACATATGCTATTCTAGGGATGTAACGTAATACAGTTACTCGACCAGTC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TAGATGTTTGCTGTACACCTGCTCGCATAATAGCTACTTCTGTCACAGTACAGAAATGGTTTGCATTAAGCTCTTTG
GAAGCTGGAATCTCTTCCTCATCTTCCAGGCTAGTCTTATTGTCAGCTTTA-TAGTTCTCTTCTCCTTTGTGCCCAATGC
TACATATTTCTGTCAGAATGTATTGCGTTGTTTTTTGATGCATTTGATCACATACATTAG--TGTATTGTCACATCCGTG
C----CACTAACTGACCTCAGTGAGCCATTTGATTTGCTGCTGGCATCTAAGTAGTTTGTAGATGAAATGCATATATACA
TGTACTGAAATATCAATTTCTTTAATCGTCATTCACTTTGAAGGCTTGCCTGTTATTTGGTTGGGAGTAATGAAATCTGG
TTGATCCAGTTAGACTGACATTCTCAGAAATGGATTGCCAGTGTTCAGTTTTACCTAGCCAATAGTTGGTTCATATAACA
GCATCCTCTCTTTTGATGTAATGTGCTCTTGTTTAATTTTATTTTGGCAATAGCTTTCCTTAGAATTTCTGACTTCCTGT
TATTTAATTGAGATGT-TGAGTGCAATTTTGTTCCTTGTTTGTGGT------CCAGAATTCTTTGATATATTCCTGGGCT
TGTTTCTTTTATGATGAAGGTGTGTTCTGTTACAGTGTCACTACCCCTTCACCATCTTCACCCTTCATTTTGGGGATGGC
TTATCATGACATATTCAACTTCTCTTAAGCTTTCTGGTGCTTCTGTATTGTTGTCTGTGCATGTTCTGCTTTTGTATTTG
TTGCCAGGACATGTTCTAGGTATATCGTTACAAGCTTGAATGGGTTGCCTCTGGCATGCTTGAACTGTTTCTGATG----
---TTTGTCCTGTCTGATGTCTGCCTGATAAGGGGATTCACTGCTAAGAAATTGTTAACATGCCATGTCACCACCGTTGT
ACAGGAGATGACCTTGGAGGAGTATGAGAAAGTATTGGAGGAGAAGCGGAAAGCAATACTCGCACTAAAGGCTGAGGAGA
GAAAGGTTGAAGTTGACAAGGAGCTGCAGTCCATGCAGCAACTGTCAGTGAAGAAGGATGCTGAGGAAGTATTTATCAAG
CTGGTAAGTTATACATGTTGCGGTCCTTCTTCTGCGTGTGGTTATATCGATGCTAATTTTTACCCAACT-CCCTGCTGCA
GGGCTCTGACAAGGAGAAGAAGAAAGAAAACACAGAAAGAGAGGAGCGTGCCAAGAAGGTATCCTGCGCATTTCTCTCAT
GTCCTGTT-ACTTTGGTCCGAGCAACTGTTGTATCTTTTACTAACTGTTGCGCTA---TGTTTCCTGTGATGCTGCCTGT
CCCTGCCTGAAGTCCCTCAGCATCAACGAATTCCTGAAGCCCGCTGAAGGCGAGAGGTACAGTGGCGGTCGGGGCCGCGG
CCGTGGCTTCAGGGGACGCGGCGAGGCCCGTGGCGGGTACAACGGCGGCGGCGGCGGTGGCAGGCGACCAGCTGCTGCTC
CGGCGATCGAAGACCAGTCCCAGTTTCCGACGCTAGGTGGGAAGTGAAGGGGTCCGTGTCCCGTGCCCTGATCCGACTAG
CAGCGGCTCCTCGGTGGTTCGCTCCAGACTGTGTCCTTGTTGAATTGTCAGTACTCAGTAGCGTGTCGTCGTTTCGCCCG
TCCGTCTTTTTAC-CTGTCGCCGTGTCTTC---GTCGCCGTCTGTGTATCCCGTGTACACCGGAGGTGCACCCGCCCATC
GCCACCCGCC-----CGTGTCTTGTTTTAGCCGCAGCTTATTCCGTTCATTTCGATAGCACAATGCCATGTATGAGATGT
TTTCCTGGTGCACTTGCTGCTGTCATGTGTCTCCTGTGTGCTTGGTTCAGTGATTTTGCTCATCTCAGAATTAAGTCCAT
CTTCTTTCTTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>chr1A_521
GAAAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAAAGATTTGTGGTGAATGGGCGGGGTGGGGAC
CCATCAACTCTGGAGGCCCATACACGAAACCAGGGCAGGCCGACACCCACGCCCGAAGCCCACGACCACCGTCCCAACAA
CCCACCTCTAAAATGACCAAACCACCCCCAGCCCCAGCACCCCCGCAAACCCACGCACACCCGTAATTACCCCTCTCCTC
CAGCCCCATTTCCGGCATTCCCCCTCCGCCCGCGGTCTGAAAACGGAGGCCAGCACACTCC--------------CACAC
TCCCACAGCTCCAGCAGCACAGCACAGAGCGGCTTCTTCTCCGTTGGCGGCGGCGGCTAGGGTTTTACCACCTCCTCACC
TCCCTCCAAAACCCTAATCTTTCCATCCAATCC---------GTCGCCCATGCCGGCGGCCTCCTGCTAGATTCGAATCG
CGCCGGAGTTGTACT----TTGTTTGAGTGCTTGGTT-GGTGCTGTGCGCCGGAGATGACGTCCAACCAGTTCGATCTCC
TCGGCGACGTCGACAACGACGACCCCTCGCAGCTCCTCGCCGCCGCCGCCGCCAAGAAGGCCGCCGAGCCCAAGCCCGCG
GCGC---------CTGCCCCCGCCGCCGGCAAGCCCGGCTCCAAGCCACCCGCCAAGACCCCGCCGCCCGGTGAGTGACC
CTCTCGGTTCGCTCTCCCTCCGATTCGATTGCTGGATGGGGTTTTCGATCCCAGCTTCCGTTTCTGTTGCTCATGGTGTG
ATG--------CGATTTGTGGCTGCAGCGGAGGAC---AGGGGCAACCGGGGGGACGGCGCCGGGCGCGGGAGGGGCGGC
CGCGGGGGCGGGTTCGG---CAGGACCGGCCCGCGGCGGGACTACGGCGACGCGGACGCCAACGGCGGCTTCGAGGGCGG
CTACGGCGGCGGCGGCGGCGGCGGCTATGCGGCGCCTCGCCTGGAGGACGGCGATGGGAAGCAGGCGGAGAGGGGCCGCG
GGCCGCGCCAGCCCTACCGCGGAGGGGGCGGCCGCCGCGGGGGCTACTCCGACGGGCAGAACACGGACGAGTTCGGGCGC
CCGCACCGCTCCTACGAGCGCCGCAGCGGCACCGGCCGCGGCTTCGGGATGAAGCGCGACGGCGCTGGCCGCGGCAACTG
GGGGACCGCCACCGACGAAGGGTTCCCACAGTTAAGATTGATCCAATTAGTCTCT-GTTTCTTGGCATGATGCTGATTCT
TTTTGCTATTATGATGTGTGGAGCTTGACGCCTTTTAT---GTGGGTGATGATGATTATCAGGGAAAATGTGGAGGCTGT
CAACACTGAGGAGACCCCTGCTGTGGCAGAGGATGAGAAGAAGCCCGAGGATGAGCCGCAGCCCGAGGCTGAGAAGGTCA
AGGAGGGTGCGGAGAATGAAGAGGAACAGAAGGAAGCTGAGGAAGATAAGGTATATTTTTCTGGAGTTTTCCATCATCTG
ATTGATTTGCATTGTGTCGTCATAGTTGTACTGTATGGGGTGTACATTTTGCATTGGTGACAAGGGTGATGGTAGCATTT
CTTGCTTGATTGGACAATCGAGATACTCCCTCTGACCCGAATTAAATGACAAAGTCTCTATATAACG---------CCCG
TTTTACGTTGTATAGAGGCTGCGTCAGTTAATTCGGATTGGAGGGAATATCATGTTTTACATATGCTATTCTAGGGATGT
ATTAATTCGGATCGGAGGGACTATCATGTTTTACATATGCTATTCTAGGGATGTAACGTAATACAGTTACTCGACCAGTC
TAGGGCCCTGCTTGGATTAGCGTTTCAGCTTGTTTCTGGCCAGTTTAGGATACGGACCTCCTCCCGTCGTTTTGATTCCA
GGCAGGAATCAAGAGGCGACCGGTAATTTACACCTGTAAAATAAATACAGGTGTAAAAACTTGCACCCATTCCAAGCAGG
GTCTAGATGTTTGCTGTACACCTGCTCGCGTAATAGCTACTTCTGCCACAGTGCAAAAATGGTTTGAATCAAGCTCTTTG
GAAGCTGGAATA-TTTCCTCATCTTCCAGGCTAGTCTTATTGTCAGCTTT-GTAGTTCTCTTCTCCTTTGTGCCCGATGC
TACATACTGCTGTCAGAATGTACTGTTGT-TTTTTTGACTCATTTGATCACATACATTTTACTGTATTGTCACATCTGTG
T----CACTAACTGACCTCAGTGAGCCATTTGATTTGCTGCTGGTATCTAAATAAGTGGTAGATCAAATGCATATGTACA
CGTACTGAAATATCAATTTCTTTAATAGTCATTCACTTTGAAGGCGTACCTGTTATTTGGTAGGGAATAGTGGAATATGG
CTGATCCAGTGACACTAGCGTTCTCAGAAATGGATTGCCTATGCTCAGTTTTACCTAGCCGATAGTTGGTTCATATAACA
GCATCCTCTCTTT-GATGTAATGTACTCTTGTTTAATCTTATTTTGTCAATAGCTTCCCCTAGAGTATTTGACTTACTGT
TATTTATTTGAGCCGTCTGAGTGCTATTTCCCCCCTTATTTATTTGAGCCGCCCAGACTTCTTTGATATATTCCTGAGCT
TGTTTGTATTATGATGAAGGTGTGTTCAGTTACAGTGGCGTTACCTCTTCACCCACCCCCAT----------GGGGTGGC
TTATTGTGTCATATTCAATTTCCCTAAAACATTCTGGTGCTCCTGTACTGTTGTCTGCACATGTTCTGCTTTGGCATTTG
TTGTCTGTATATGATCCAGGCATCTCATTACAAGTTTGAATAGGTTACCTGTGGCATGCTTGTGCTCTTTCTGATGCCTA
ATGTTTGTCCTGTGGCATGCTACATCTGT-ATTGAAATAACTTGTACTTTGACCA------------------------T
ACAGGAGATGACCTTGGAGGAGTATGAGAAAGTGTTGGAGGAGAAGCGGAAAGCGATACTCGCACTAAAGGCTGAGGAGA
GAAAGGTTGAAGTTGACAAGGAGCTGCAGTCCATGCAGCAACTGTCAGTGAAGAAGGATGCTGAGGAAGTATTTATCAAG
CTGGTAAGTTTTACATCAGGCCGTCTTTCTTCTGCATGTGGTCATATTGATGCTAACTTTCCGCCGCCACCCCTGGTGTA
GGGCTCTGACAAGGAGAAGAAGAAAGAAAACACAGAAAGAGAGGAGCGTGCCAAGAAGGTATCCTGCGCATTTGTCTCAT
GTCCTGTTTACTTGGGTCTGAGCAACTGTTGTATCTTTTACTAACTGTTGTGCTATGTTGTTTCCTGTGCTGCTGCCTGT
CCCTGCCTGAAGTCCCTCAGCATCAACGAATTCCTGAAGCCAGCTGAAGGCGAGAGGTACAGTGGCGGTCGGGGCCGCGG
CCGTGGCTTCAGGGGACGCGGCGAGGCCCATGGCGGGTACAACGGCGGCGG---CGGTGGCCGGCGACCAGCTGCTGCTC
CGGCGATCGAAGACCAGTCCCAGTTTCCGACGCTAGGTGGGAAGTGAAGGGGTCTGTGTCCCGTGCCCTGATCCGACTAG
CAGCGGCTCCTCGGTGGTTCACTCCAGACCGTGTCCTTGTTGAGTTGTCAGTACTCAGTAGCGTGTCGTCGTTTCGCCCA
TCCGTCTTTTTTATCTGTCGCCGTGTCTTCGTCGTCGCCGTCTGTGTATCCCGTGTACACCGGAGGTGCACCCGCCCATT
GCCGCCCACCCGTGTCGTGTCTTGTTTTAGCGGCAGCTTATTCCGTTCATTTCAATAGGACAATGCCATGTATGAGATGT
TTTCCTGGTGCACTTGCTGCTGTCATGTGTCTCCTGTGTGCTTGGTTCTGTGATTTTGCTCATCTCAGAATTAAGTC-AT
CTTCTTTCTTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
-SSSSSS--------------------S----------------------S------------------SS---------
----------S--------S----S-------------------------------------------------------
------S----------------S-----------S----------------------S---------------------
S-----------------------S-------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------------------------------------------------------------S---S
----------S-SS-SSSS-----------------S------S-S----------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
----------------S---------------------S---------S-------------------------------
--SSSSSSSSS------------------------------------S--------------------------------
-----S-----SSS---SSS------------------------------------------------------------
----------------------------S-------------------------S--------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S-----------S---------S--
------------------------------S--S-----------S----------------------------------
--------------------------------------------------------------------------------
----------S---------------S-----------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------S----SSSSSSSSS----
------S------S------------S-----------SS------S-----------------------------S---
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S---------------------SS------------------S-----------------------------
---S-------S-----------S---------S----------------S------S-------S--S-------S---
-------------------------------------S---SS------------------SS--SS-S-S------S--
-SSSS--------S----------S---------------S---------------------------------------
---------------S---------------------------------S---S--------------------------
--------------------------------SS-------------S---S------S---------------------
-------------------S--------------------------------S----S----------------------
--------------------------------------------------------------------------------
------------------------------------------S-S-----S-----------------------------
--------------------------S-------------------S---------------------------------
--S-----------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----------S----------S-----------S----------------------------------------------
-----------------------------S---------------------------------------------S--S-
----------------------------S--------S-------S---S----S--------S--S-------------
--------------------------S--S---------S-S-------------------S------S-----------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--S--------S-------SSSS-S-S-SSS----------S-------------------S------------------
----------------------------------------------------S------------S--------------
---------------------S-S--S---S--S---S--------------------S---S--S-------S------
---SS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_187
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CCTGGTTGGCTTTGCAAGAC-----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>reverse_1286
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----ATTGCTCGATTTGTGGCTGC-------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>forward_188
--------------------------------------------------------------------------------
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--------CTGGTTGGCTTTGCAAGACC----------------------------------------------------
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>reverse_1289
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------GCTCGATTTGTGGCTGCAG-----------------------------------------------------
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------------------------
>forward_273
--------------------------------------------------------------------------------
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-------------AAGCGGGAGTAAGAAACGGG-----------------------------------------------
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>reverse_2143
--------------------------------------------------------------------------------
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--------------------------------------------------------------CAATGGCGTAGTTGTCCG
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------
>forward_369
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ACGGACACTTTCAGTTGGCA-------------------------------
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>reverse_2489
--------------------------------------------------------------------------------
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--------TTTTGCTGTACACCTGCTCG----------------------------------------------------
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>forward_381
--------------------------------------------------------------------------------
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-----------------------------------------AGTTGGCACCTTCAGAAGCA-------------------
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>reverse_2572
--------------------------------------------------------------------------------
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-----------TTTTTCCTCATCCTCCAGGCT------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>forward_664
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----CCCCCAAAATGACCAAACCG--------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2709
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------CTGACATCCATG
CCAAGCAC------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------
>forward_1791
--------------------------------------------------------------------------------
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-----------TGATGTGTGGAGCTTGACGT-------------------------------------------------
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------------------------
>reverse_3710
--------------------------------------------------------------------------------
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-----------------------------GCACAGAAAGAGAGGAGCGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------
>forward_3390
--------------------------------------------------------------------------------
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----------TGTGGCATGCTACACCTGTC--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>reverse_4713
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TAATGCGG
CAGTGTGGAAGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
