>input_sequence_27731
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------------ATGGGCTGGGGGATATCCCGGTTGATTGGACTGAAGGCTGCTGTCTTGCTCACCGCAGCGTATTTCGT
TCATGGACTGGGCATGAAACTGCTCTCATTGCCCCTCATATACACCTGCCTGATTGCCGTGCTTATCTCCATTGCTTCCC
ATCCGTCGGTCGACCTCCCGTTGCTCCTCGGCAAGGCATCCAATGGAAGCTTTCCCCTGTGGTCATGGGTCATGTTCTCG
CCCTTTCTCTTTTTCATCCATCTGTTTGTGCTGTTGCGGAGATTTGTGAAAAATGAGCCCTTGTACACCGAGATAGCAGA
CGGAGTGTATGTTGGAGGCTGGCCTTCTTCAGTTGAACGCCTGCCACCTGGTGAACCCGCAGTCATTGATTGCACCTGCG
AGCTGCCAAGAAGCTCAACTATATCTGAGAATTCATATTTGTGTGTCGCTACATGGGATACAAGGGCGCCTCAGCCACCA
CAGATTGAGTCAGCTGTGCGGTGGGCCGTGAGAAAGCGGTCACAGAACAAACCTGTGTATGTCCACTGTGCCTATGGTAA
GTTTTTATCTGTTAG---TTTGTTATTCTAGATTTATGAAAAGCCTTATGTTTTATTATGTTTTGATAATAATAGTGGTC
GTCTACTTGTCTTCATGCATCTGAATTCACTTATGCAGCTTACTACTCACATTAGAT-TTTGTTGATAGAGTAGACACAT
CTACTACCTTGAGGTGGATAAACTGTTGAGCTGTATTGTGGGTGTGCTGATGTGCATTT-CTGTCCTGTGGTTGTCCTTA
GCATTTCTGATTTACCTTTCAATATCTATCAAAGTTAAACTGCCTCTCATACACTATAGGATAAATTTAATGACATATAA
CAATCTTCACTAATTGCCATCATATATGGGTCAAGATATACCCATATGCGCGACTACAAGGTATCCCATGGTTATTCTAG
CATTTCTAATTTATCTTTCCATATCTATCAAAATTAAACTGCCTCTCATACATTGAAGACTAAATTTAATATATGACAAT
CTTCAGTAAATTGCCATCATATAGAGGTCAAGATATACCCATATGCGTGATTACAAGGTTTGCACATACATAACGAATAT
TACAAATGTAATTGTAATGTCATCCATTGTCTCAAGGGCTCGTTTGGCCTGGTTTAGACTTAGGACTAAAAATGAAGCTT
AAGCAGGAGCTGTGCGGCCAATTAATTTGTTTGTTTAGCTCATATTCATTATAAGTTTA--CAGTGGTTTGTTCAATTGG
GTTATGAATACAAAGTTGTGTGTATTGAGCTCTTAGTTCCAATAGCATGCCCATTTGAATAACCCTAGGTTAGTACAATA
GTTATAGACGGTTTTGCAGCCATGCAATACTCAGGTTTAAGTTACCTTATGTCTCGATAGTTATATTGTTTAAAAAGCAC
CGATACGGGGACACGGACATGGGGATACGCATACGGGGACAC----------ATTTTCCAAAAACAGCCATATGGGGATA
CATCGTGTATAGATTGAAAAAAAAAAACATGCCATGTAATAAAAACAGAAAGATAATGAGATGAGATCAAAATACTACCC
CATTTGTTGCCTCCATGCCTCCCTTTTCAAGTCCTTGAAAGATTGAACTGAATGATCCTCAATTTCCTCATACTGAGGTC
CTT-----------------------------------------------------------------------------
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-------------CCAACTTGCAAAATACACCATATGCTAGTATTACAACATAAGGCCGCGTAGGATATTTAGGATCTGG
AATACCAGGCCTCTTCACTGTCACCCACTGCCGTGCCGCTGCCCCCAGATGCCATGCTCGGTAGCTAGCAAGAAGGG--C
ACCAGCAGTAACAAGACAGCAAGCTG--CGGCACCGGCG-----------------------------------------
---------------TGCCCGTACTTTGCTGCTGAGAGCAAAGCTGGCCGGAGATTTCACATGTCAGAGGCGCC------
GGC------GCAGTCGCAGGAATGTGGACTCGAGGGGAGAATAGGAGATGGGCTGCTCGACTGATGCCTGTTAGGGTTAG
TACATTGGCTGACTGGACCTTCTTGTGTCCCTGGCGTATCCCAGTTGTTTAAGCCGTGTCGGTGTATTTTTCTTTTTTTA
ATC-CTGAAATTACGGGATACTCCATGACACACGTGTCCCT---------------GTGTTGCACACCTATTATATGGGG
ATACCGCGACTTTTGACTTGTCGGTGCTTTCTAGGTAAACAGACAGAAATATTCGAGGTCAAATTATGCATTACAGTTTT
GGCATTTTCCTATTATGGAAGGTAGAAATGATGTAGGACATGGTCATGTGGGATCAAGGGTTAACTGCTAAGCATCAAGT
CATATGATGCTTGCCTTTGTCCTTTTCACAACTAGGAAGTACTATTTCTTTCTTCCCTTTATATTTTTCTCCATCCAGTC
AAGCAAAAGAGCATCAGTGAAGTAGCTTGTAAATTAGCCATTAAGTTGATGCAAGGCAGGATCCAAACAGCCTAATCCAT
GTGATAAGCTACTCTAGTACTCTATCTATATGAGGCATGCCATTAACCATTACAGAGAGCAAAGTTTCCTTTCCTAGTGC
ATTAAGCTCTTAACAGCTCGTCATCTAAGTGCTTTGCTAAACTGTAACAGGCCATGGCAGAAGTGTCTGCGTGATGTGTG
CACTTCTAGTTGCGCTGGGATTAGCTGACGATTGGAAAGCTGCTGAGCAAATGATCCGCGAGAAGCGACCTTCTATCAGC
ATGAACACTCTTCATCGCAAAAGCTTAGAGGAATGGTCAAAACACTTGCTTTCTCCCTCAAAAGGAAGTGGGGAATCCGA
TGTGAGTTCTGTGATTCTTTCGGACTACACCCGGAAAAAGCATTGA----------------------------------
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>chr3A_1_TraesCS3A01G372300
ATTGCTTAGTGAGATGTTAAGGTGGACATTTTGCATGTTGAGAGAATTGAGACCAACTTCTTAATAATGTAAAATGTATA
AAGAGCAAATTCTTAAAAGAAAAAAATTAGACACAAAA---TTAAAAGATAAAACATTTTGAATAAGAGAAAACTCGCGA
CCTTTTGCGCGGATCCACTCCCCTTCGGTGTCCAAATTATATCCTACTGC------------------------------
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--------------------------AAGAACCTGGGCTAGGCCCACGCGAATGCAGACGAGAACGAAATCTGCAGTTTA
CTACGTCTGAGCATCCAGCCCAGCCCATGGCTCCTGGTTCGCAGACGCGTTCGTTCTGCTTTGGTGGA-AAAATCCCTAA
CCCGATCTAAAAAAAAAA---AAGGAAAATCCCCAACCCAGACCGCCGCGTCACTGCTCCGCTCCTCTCCATCTTTCTTC
CCGTCGGCCGAGAGGCCAGAAGC------------------------------------ACCGGGCACCGTCTCCCGTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTAGTACAGTATC
GCTTTCTGC-----------------------------------------------------------------------
-------------------------------------GCAGCAATTTGATTTGTTCGAACCCTAAAGGCGTAGCTTCC-T
CTTAGCTGGAACTGGGTACTATTCCTCCCGATTCACGTTTGTTGATATTGTATCTTTGATGTCAGGGTTCA---GTTGAA
GGCTTGTGG-AGATGGGCTGGGGGATATCCCGGTTGATTGGACTGAAGGCTGCTGTCTTGCTCACCGCAGCGTATTTCGT
TCATGGACTGGGCATGAAACTGCTCTCATTGCCCCTCATATACACCTGCCTGATTGCCGTGCTTATCTCCATTGCTTCCC
ATCCGTCGGTCGACCTCCCGTTGCTCCTCGGCAAGGCATCCAATGGAAGCTTTCCCCTGTGGTCATGGGTCATGTTCTCG
CCCTTTCTCTTTTTCATCCATCTGTTTGTGCTGTTGCGGAGATTTGTGAAAAATGAGCCCTTGTACACCGAGATAGCAGA
CGGAGTGTATGTTGGAGGCTGGCCTTCTTCAGTTGAACGCCTGCCACCTGGTGAACCCGCAGTCATTGATTGCACCTGCG
AGCTGCCAAGAAGCTCAACTATATCTGAGAATTCATATTTGTGTGTCGCTACATGGGATACAAGGGCGCCTCAGCCACCA
CAGATTGAGTCAGCTGTGCGGTGGGCCGTGAGAAAGCGGTCACAGAACAAACCTGTGTATGTCCACTGTGCCTATGGTAA
GTTTTTATCTGTTAG---TTTGTTATTCTAGATTTATGAAAAGCCTTATGTTTTATTATGTTTTGATAATAATAGTGGTC
GTCTACTTGTCTTCATGCATCTGAATTCACTTATGCAGCTTACTACTCACATTAGAT-TTTGTTGATAGAGTAGACACAT
CTACTACCTTGAGGTGGATAAACTGTTGAGCTGTATTGTGGGTGTGCTGATGTGCATTT-CTGTCCTGTGGTTGTCCTTA
GCATTTCTGATTTACCTTTCAATATCTATCAAAGTTAAACTGCCTCTCATACACTATAGGATAAATTTAATGACATATAA
CAATCTTCACTAATTGCCATCATATATGGGTCAAGATATACCCATATGCGCGACTACAAGGTATCCCATGGTTATTCTAG
CATTTCTAATTTATCTTTCCATATCTATCAAAATTAAACTGCCTCTCATACATTGAAGACTAAATTTAATATATGACAAT
CTTCAGTAAATTGCCATCATATAGAGGTCAAGATATACCCATATGCGTGATTACAAGGTTTGCACATACATAACGAATAT
TACAAATGTAATTGTAATGTCATCCATTGTCTCAAGGGCTCGTTTGGCCTGGTTTAGACTTAGGACTAAAAATGAAGCTT
AAGCAGGAGCTGTGCGGCCAATTAATTTGTTTGTTTAGCTCATATTCATTATAAGTTTA--CAGTGGTTTGTTCAATTGG
GTTATGAATACAAAGTTGTGTGTATTGAGCTCTTAGTTCCAATAGCATGCCCATTTGAATAACCCTAGGTTAGTACAATA
GTTATAGACGGTTTTGCAGCCATGCAATACTCAGGTTTAAGTTACCTTATGTCTCGATAGTTATATTGTTTAAAAAGCAC
CGATACGGGGACACGGACATGGGGATACGCATACGGGGACAC----------ATTTTCCAAAAACAGCCATATGGGGATA
CATCGTGTATAGATTGAAAAAAAAAAACATGCCATGTAATAAAAACAGAAAGATAATGAGATGAGATCAAAATACTACCC
CATTTGTTGCCTCCATGCCTCCCTTTTCAAGTCCTTGAAAGATTGAACTGAATGATCCTCAATTTCCTCATACTGAGGTC
CTT-----------------------------------------------------------------------------
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-------------CCAACTTGCAAAATACACCATATGCTAGTATTACAACATAAGGCCGCGTAGGATATTTAGGATCTGG
AATACCAGGCCTCTTCACTGTCACCCACTGCCGTGCCGCTGCCCCCAGATGCCATGCTCGGTAGCTAGCAAGAAGGG--C
ACCAGCAGTAACAAGACAGCAAGCTG--CGGCACCGGCG-----------------------------------------
---------------TGCCCGTACTTTGCTGCTGAGAGCAAAGCTGGCCGGAGATTTCACATGTCAGAGGCGCC------
GGC------GCAGTCGCAGGAATGTGGACTCGAGGGGAGAATAGGAGATGGGCTGCTCGACTGATGCCTGTTAGGGTTAG
TACATTGGCTGACTGGACCTTCTTGTGTCCCTGGCGTATCCCAGTTGTTTAAGCCGTGTCGGTGTATTTTTCTTTTTTTA
ATC-CTGAAATTACGGGATACTCCATGACACACGTGTCCCT---------------GTGTTGCACACCTATTATATGGGG
ATACCGCGACTTTTGACTTGTCGGTGCTTTCTAGGTAAACAGACAGAAATATTCGAGGTCAAATTATGCATTACAGTTTT
GGCATTTTCCTATTATGGAAGGTAGAAATGATGTAGGACATGGTCATGTGGGATCAAGGGTTAACTGCTAAGCATCAAGT
CATATGATGCTTGCCTTTGTCCTTTTCACAACTAGGAAGTACTATTTCTTTCTTCCCTTTATATTTTTCTCCATCCAGTC
AAGCAAAAGAGCATCAGTGAAGTAGCTTGTAAATTAGCCATTAAGTTGATGCAAGGCAGGATCCAAACAGCCTAATCCAT
GTGATAAGCTACTCTAGTACTCTATCTATATGAGGCATGCCATTAACCATTACAGAGAGCAAAGTTTCCTTTCCTAGTGC
ATTAAGCTCTTAACAGCTCGTCATCTAAGTGCTTTGCTAAACTGTAACAGGCCATGGCAGAAGTGTCTGCGTGATGTGTG
CACTTCTAGTTGCGCTGGGATTAGCTGACGATTGGAAAGCTGCTGAGCAAATGATCCGCGAGAAGCGACCTTCTATCAGC
ATGAACACTCTTCATCGCAAAAGCTTAGAGGAATGGTCAAAACACTTGCTTTCTCCCTCAAAAGGAAGTGGGGAATCCGA
TGTGAGTTCTGTGATTCTTTCGGACTACACCCGGAAAAAGCATTGAACTCGCAAGACACGGACTTGTTCAGTAACTGTGA
TAATTGAGAAGACTTCATGCTTTGGTGTTATCTACTGTAGTCCTAGTAAATGTCCAAGGCATTTCGTTGTCTAAGTTACT
GTCCTCGATTATGTTGTATGGATACGTGGATATTCTATTACTGTGCCTTACAATGTTGCTCTTTTTATGCATACTGTTCA
TTGATCCTTGGGGTCATTGAATGCTTTCAAGACAAATCGTTTTGTGGGATTTT-C--TCTTAAAATAGAGGTCCCTGCTA
GCCTGCTAGATTGCCATTTATAACGGAGTGTA---TGTCTCCCATCCGTACCTTTTGCATTTTTAAGGCAGTACCATGCA
TTCAATATCCCTGCTAGGTACTCCTCGTTTGGTTCAAGTAAATGCTCAGCTATTCATAGCTTTCTTGTGCT--------G
CACCAGCCCGTCGTGTAACCATTTCATTATGTAAAAAGTTTCTTGTTTTGAAGTTTCCTGACTTACCTATGTTGATTGAA
GTTATGCTGAAGTGTACTCATTTTGGTATTCTTTGATTGAGGTTATGCTGAAGTGTGCTCGTTCTGATATTTTTTGTATG
CTCACTTGATTTTTCATCCTTTTTACCATCTGTCTGTCCTTATTAATGAGCGGCTTTCTAGTTAGAGGTTGAATTCTGAG
CTGCATGCTTGGAATGATCTTCATCTGATAGCAGGTTTCACGCTTGA-AACAGTTCTGGCTAGATGCCATGATGAAGCTG
ATGTTGAGTTCCTGAGTCCCTTGGTCTGGTATTGATGGAGCATCCACAGAGCTGTTT--CTTTTACATCTGTTTATCATG
TGTGAACTTCCATCTTCTGTTTATTGTTTTATTTATGTAAGGTTCCTTACGCTGTTTCGACATGTATTGCTTAACATTGC
TCTTAAATGTTACTGCTTCTTTCATGGTTTCTTTCGCTCAACAATTCGCTGATTGTTTCTAAAGTGCTGCTGACTTGTTC
TGTGGCACATTTTCATCAGCGGT
>chr3D_1
ATTGCTTAGTGAGATGTTGAAGTGGACATTTTGCATGTTCAGAGAATTGAGACCAACTTCTTAAGAATGTAAAATGTATA
AAGAGCAAATTCTTAAAAGAAAAAATATTTAGACGCACAGTTTAAAAGATAAAACATTTTGAATAAGAGAAAACTTGCGA
CCTTTTGCGCGGATCCACTCCCCTTCGGTGTCCAAATTCTAACCTACTCCCTCCGTCCGGTGAAAATTCTATATATAGAA
ATTTTAGGACAAATTATCGAGTGGAGTAAAAAATGCATTGAAAAGGAGCAAGCCACCATCTCCCTCCTCTTTAATTATCC
AACCCCCAATGACCTAAGTGCATGTAAAAGTCAAGGAGACTATGGGGGTGTTTGGTTCAGAAGTCCTAGGACTTTTTCTA
GTCCCAGGGACTAATCAAAAAAGACTCTCTAGTAGAGTCTTTTTCTAGTCCCTGTAGAAAAAGTCCCTCCCGTTTAGTTC
CTATGGACTTTTTCTAGTCTCTGGGACTAAAAAGTCCCTGAACCAAACACCCCCTATGTGTAGAATGCTATTGGTCTTGA
TTACCGTGTGATGAGAGAGAAGCAATTTTTTCTACTTTAATGTGCATTGGGAAGATAGATGTACATTTTTTTATGGACAA
ATTTTAGAGTCAGAGGGGAGTACTGTAAGAACCTGGGCTAGGCCCACGCGAATGCAGACGAGAACAATGCAG----TT--
-TACGTTTGAGCATCCAGCCCGGCCCATGGCCCCTGGTTCGCAGACGCGTTCGTTGTGCTTTTTGGTGGAAAATCCCTAA
CCCGATCTAAAAAAAAAAG---AGGAAAATCCCCAACCCAGACCGCCGCGTCACTGCTCCGCTCCTCTCCATCTTTCTTG
CCGTCGGCCGA--GGCCAGAAGCACCGGGCACCGTCTCCCGTCGGCCGAGGCCAGAAGCGCCGGGCACCCTCTCCCGTCG
GCCATCGCGATCCCTACA---CCCGCCGCTGCTGGGATCGGAGGGAGACCCCCCGATCCGTTCCCCACCGTTTCTCCCTA
GGAGGTATATTGCTCCCTGTTCAGATCGCTACATAGGATTTACGGCGTAGCTTGCTGTTGAATCCGGGGCGATAAATTGG
ATATCTGCCGAGGGGTT---------------------------------------------------------------
-----------------GGGGAGGGTTTCTTGATTGCAAC----------------------------------------
----------------------------------------------------------------TAATTAGTACAGTACT
ACCCCTTCATTCGGAATTACTTGTCGCACAAATGAATGTATCTAGACGTATTTTAGTTCTAGATGCATCCATTTTCGAGA
CAAGTAAAATCCGAACGGAGGGAGTATCTCTTTGTGTGCAGCAATTTGATTTCTTCGAACCGTAAAGGCGTAGCTTCCTT
CTTAGCTGGAACTGGGTACCATCCCTCCCGATTCACGTTTGTTGATATTGCATCTTTGATGTCAGGGTTCA---GTTGAA
GGTTTGCGAAAGATGGGTTGGGGGATATCCCGGCTGATTGGACTGAAGGCGGCTGTCTTGCTCGCCGCAGCGTATTTCGT
TCATGGACTGGGCATGAAAGTGCTCTCGCTGCCCCTCATATACACCTGCCTGATTGCCGTGCTTATCTCCATTGCTTCCC
ATCCGTCGGTCGACCTCCCGTTGCTTCTCGGCAAGGCATCCAATGGAAGCTTTCCCCTATGGTCATGGGTCATGTTCTCG
CCCTTTCTCTTTTTCATCCATCTGTTTGTGCTGTTGCGGAGATTTGTGAAAAATGAGCCCTTGTACACCGAGATAGCAGA
CGGAGTGTATGTTGGAGGCTGGCCTTCTTCAGTTGAACGCCTGCCACCTGGTGAACCCGCAGTCATCGATTGCACGTGCG
AGCTGCCAAGAAGCTCAACTATATCCGAGAATTCATATTTGTGTGTCGCTACATGGGATACAAGGGCGCCTCAGCCACCA
CAGATTGAGTCAGCGGTGCGGTGGGCCGTGAGAAAGCGGTCACAGAACAAACCTGTGTATGTCCACTGTGCCTATGGTAA
GTTTTTATCTGTTTTTTTTTTGTTATTCTAGATTTAAGAACAGCCTTGTGTTTTATTATGTTTTGATAATAATAGTGGTT
GTCTACTTGTCTTCATGCATCTGAATTCACTTATGCAGCTTACTACTTATATTAGATATTTGTTGATAGAGTAGACACAT
CTACTGCCTTGAGGTGGATAAACTGTTGAGCTGTATTGTAGGTGTGCTGATGTGCATTT-CTGTCCTGTGGTTATTCTTA
GCATTTCTGATTTATCTTTCGATATCTATCAAAGTTAAACTGCCTCTCATACATTATAGAATAAATTTAATGACATATAG
CAATCTTCACTAATTGCCATCATATATGAGTCAAGATATACCCATATGCGCGACTACAAGGTGTCCCGTGGTTATTCTAG
CATTTCTAATTTATCTTTCCATATCTATCAAAGTTAAACTGCCTCTCATACATTATAGGCTAAATTTAATATATGAAAAT
CTCCAGTAAATCGCCATCATATAGAGGTCAAGATATACCCATATGTGCGACTACAAGGTTTGCGCATACATAACGAATAT
TACCAATGTAATTGTAATGTCATCTATTGTCTCAAGAGCCTGTTTGGCCTGATTTAGACTTAGGACTAAAAATGAAGCTT
AAGCAGGAGCTGTGCGGCCAATTAATTTGTTTGTTTAGGTCATATTCATTATAAGTTTATACAGCGGTTTGTACAATTGG
GTTATGAATACAAAGTTGTGTGTATTGAGCTCTTAGCCCCGATAGCATGCCCATTTGAATAAGCCTAGA-----ACAATA
GTTATAGACGG-TTTGCAGCCGTGCAATACTCAGGTTTAAGTTACCTTATATCTCGATAGTTATATTGTTTAAAAAGAAC
CGATACGGGGACACGGACATGGGGATACGCATACAGGGACACGGAATATGAAATTTTCCAAAAACAGCCATATGGGGATA
CAGCGTGTATATCTT-------AAAAAAAATCCAGGTAATAGAAACAGAAAGATAATGAGATGAGATCAAAATACTACCC
CATTTGTTGCCTCCATGCCTCCCTTTTCAAGTCCTTGAATGATTGT----AATGATCCTCAATTTCCTCATACTGAGGTC
-TTCCAACTTGCAAAATACACCATATGCTATC-----------------------------------TGGAATAGCAGGC
CTCTTCACTGTCACCCACTGCC-----------CCCAGATGCCATCCTCGGTAGCCAGCAAGAAGTCAGCACCACCAGCC
ACAAGACAGCAAGCTGCGGCAGGCAAGAACGGCAGCGGTGGGGGCCGGCGGGGAGGGGAGGGGAGGCCGTGCCCGTGCCT
TGCTG-----------------------------------------------------CGAATGATCGTCAATTTCCTCA
TACCGAGGTCTTCCCAACTTGCAAAATACACCATACGCTAATATTAGAACATAA----------GATATTTAGGATCTGG
AATACCAGGCCTCTTCACTGTCACCCACTGCCGTGCCGCTGCCCCCAGATGCCATGCTCCCTAGCCAGCAAGAAGTCAAC
ACCAGCAGTAACAAGACAGCAAGCTG--CGGCACCGGCGGCAGGCAAGAACGGCAAGAGGGGGAAAGGAGAGAGGGGAGA
CCTGAGGC-----CGTGCCCATACCTTGATGCTGAGAGGAAAGCTTGCCGGAGAT-CCACATGTCAGAGGTACCGGTGGT
GGC------GCAGTCGCAGGAATGTGGACTTGAGTGGAGAACAGGAGACGGGGTGCTCGATTGATGCCTGTTAGGGTTAG
TATATGGGCTGACTGGACCTTCTCGTGTCCCCAGTGTATCCCAGTTGTTTAAGCCATGTTGGTGTATTTTCTTTTTTTTT
TAATCGGAAATTACGGGATACTACATGACACACATGTCCCGACCT-------CCCCGTGTTGCACACGTATTATACGGGG
ATACAGTGACTTTTGATGTGTCGGTGCTTTCTAGGTAAACAGACAGAAATATTCGAGGTCAAATTATGCATTACAGTTTT
GGCATTTTCCTAT-ATGGAAGGTAGAAATGATGTAGGACATGGTCATGTGGGATCAAGGGTTAACTGCTAAGCATCAAGT
CATATGATGCTTGCCTTTGTCATTTTCACAACTAGGAAGTAATATTTCTCTTTTCCCTGTATATGTTTCTCCAT-CAGTC
AAGCAAAAGAGCACCAGTGAAGTAGCCCGTAAATTAGCCATTAGGTTGATGTAAGGCAGGATCCAAACAGCCTAATCCAT
GTGATAGGCTACTCTAGTACTCTATCTATATGAGGCATGCCATTAACCATTACAGAGAGCAAAGTTTCCTTTCCTGGTGC
ATC--------AACAGCTCGTCATCTAAGTGCTTTGCTAAATTGTAACAGGCCATGGCAGAAGTGTCTGCGTGATGTGTG
CACTTCTAGTCGCACTGGGATTAGCTGACGATTGGAAAGCTGCTGAGCAAATGATCCGCGAGAAGCGACCTTCTATCAGC
ATGAACACTCTTCATCGCAAAAGCTTAGAGGAATGGTCAAAGCACTTGCTTTCTCCCTCAAAAGGAAGTGGGGAATCCGA
TGTGAGTTCTGTGATTCTTTCGGACTACACCCGGAAAAAGCATTGAACTCGCAAGACACGGACTTGTTCAGTAACTGTGA
TAATTGAGAAGACTTAATGCTTTGGTGGTATCTACTGTTGTCCTAGTAAATGTCCAAGGCATTTCGTTGTCTAAGTTACT
GTCCTCGATTATGTTGTATGGATACGTGGATATTCTATTACTGTGGCTTACAATGTTGCCCTTTTTATGCATACTGTTCA
GTGATCCTTGGGGTCATTGAATGCTTTCAAGACAAATCATTTTGTGGGATTTTTCTTTCTTAAAATAGAGGTCCCTGCTA
GCCTGCTAGATTGTCATTTATAACGGAGTGCAGTATGTCTCTCATCCGTACC--TTGCATTTGTAAGGCAGTACCATGCA
TTCAATATCTCTGCTAGGTACTCCTCGTTTGGTTCAAGTAAATGCTCAGCTATTCATAGCTTTCTTGTGCT--------G
TACCAGCCCGTCGTGTAACCATTTCATTATGTCAAAATTTTCTTGTTTTGAACTTTCCTGACTTACCTATGTTGATTGAG
GTTATGCTGAAGTGTACTCATTTTGGTACTCTTTGATTAAGGTCATGCTAAGGTGTGCTCGTTCTGATATTTTTTGAATG
CTCACTTGGTTTTTCATCCTTTTTACCATCTGTCTATCCTTGTTAATGAGCGGCTTTCGAGTTAGAGATTGAATTCTGAG
CTGCATGATTGGAATGATC---ATCTGATGGCAAGTTTCACGCCTGGCAACGGTTCCGGCTAAATGCCATGATGGAGCTG
ATGTTGAGTTCCTGAGTCCCTTGGTCTGGTATTGATGGAGCATCTACAGAGCTGTTTTCCTTTTTCATCTGTTTATCAGG
TGTGAACTTCCATCTCCTGTTTATTGTTTTATTTAAGTCAGGTTCCTTATGCTGTTTCGACATGTATTGCTTAACATCGC
TCTTAAATGCTACTGCTTCTTTCATGGTTTCTTTTGCTCAATAAGTCGTTGGTTGTTTCTACCTTACTGC-GACTTGTCC
TGT--------------------
>chr3B_154
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GCGA
CCTTTCGGGCAGATCCGCTCCCCTTCGGTGTCCAAATTCTAATCTACTGTAG----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------GAACCTGGGCTAGGCCCACGCGAATGCAGACGAGAACGAAACTGCAGTTT--
-TACGTTTGAGCATCCAGCCCGGGCCATGGCCCCTGGTTCGCAGACGCGTTCGTTGTGTGCTTTGGTGGAAAATCCCTAA
CCCGATCTCAAAAAACAAAAAAAGGAGAATCCCCAACCCAGACCGCCGCGTCACTGCTCCGCTCCTCTCCATCTTTCTTC
CCGTCGGCCGA--GGCCAGAAGG------------------------------------GCCGGGCACCGTCTCCCGTCG
GCCGTCGCGATCCCTACACCCCCCGCCGCTGCTGGGATCAGAGTGAGACCCCCCGATCCGTTCCCCACCGTTTCTC----
---GGTATATTGCTCCCTGTTCAGATCGCTACATAGGATCTACGGCGTAGCTTGCTGTTGAAGCCGGGGCGATGGATAGG
ATATTTCCCGATGCGCAAGCGCCAAGAAAAAGTACCATAGCTAACCGAGGAGTAGGCAGAACACTGCAATTGCTCGGTGT
ACGCGTGATAGTGCCGGGGGGAGGGTTTCTCGATTGCAAC----------------------------------------
----------------------------------------------------------------TAATTAGTACAGTATC
GCTTTGTGC-----------------------------------------------------------------------
-------------------------------------GCAGCAATTTGACTTGTTCGAACCGTAAAGGCGTAGCTTCC-T
CTTAGCTGGAACTGGGTACTATCCCTCCCGATTCAGGTTTGTTGATATTGTATCTTTGATGTCAGGGTTCATCAGTTGAA
GGCTTGCGA-AGATGGGTTGGGGGATATCCCGGTTGATTGGACTGAAGGCAGCTGTCTTGCTCACCGCAGCGTATTTCGT
TCATGGACAGGGCATGAAAGTGCTCTCACTGCCCCTCATATACACCTGCCTGATTGCCGTGCTTATCTCCATTGCTTCCC
ATCCGTCGGTCGACCTCCCATTGCTCCTCGGCAAGGCATCCAATGGAAGCTTTCCCCTATGGTCATGGGTCATGTTCTCG
CCCTTTCTCTTTTTCATCCATCTGTTTGTGCTTTTGCGGAGGTTTGTGAAAAATGAGCCCTTGTACACCGAGATAGCAGA
CGGAGTTTATGTTGGAGGCTGGCCTTCTTCAGTTGAACGCCTGCCACCTGGTGAACCCGCAGTCATCGATTGCACTTGCG
AGCTGCCAAGAAGCTCAACTATATCCGAGAATTCATATTTGTGTGTCGCTACATGGGATACAAGGGCGCCTCAGCCACCA
CAGATTGAGTCAGCTGTGCGGTGGGCCGTGAGAAAGCGGTCACAGAACAAACCTGTGTATGTCCACTGTGCCTATGGTAA
GTTTTTATCTGTTTTTCT-------TTCTAGATTTAATAACAGCCTTGTGTTTAATTATGTTTTGATAATAATAGTGGTC
GTCTA--------------TCTGAATTCACTTATGCAGCTTACTACTTATATTAGATATTTGTTGATAGAGTAGACACAT
CTACTGCCTTGAGGTGGATAAACTGTTGAGCTGTATTTTAGGTGTGCAGATGTGCATTTTCTGTCCTGTGGTTATTCTTA
GCATTTCTGATTTATCTTTCGTTATCTATCAAAATTAAACTGCCTCTCATACATTACAGGATAAATTTAATGACATATAA
CAATCTTCACTAATTGCCATCATATATGGGTCAAGATATACCCATATGCGCGTCTGCAAGATGT-CCGTGGTTATTCTAG
CATATATAATTTATCTTCCCGTATCTATCAAAGTTAAACTGCATTTCATACATTATAGGCTAAATTTAATATATGACAAT
CTTCAGTAAATTGCCATCATATAGAGGTCAAGATATACCCATATGCGCGACTACAAGGTTTGCGCATACATAACAAACAT
TACAAATGTAATTGTAATGTCATCTATTGTCTCAAGAGCCCGTTTGGCCTGGTTTAGGCTTAGGACTGAAAATGAAGCTT
AAGCAGGAGCTGTGTGGCCAATTAATTTGTTTGTTTAGCTCATATTAATTATAAGCTTA--CAGCGGTTTGTACAATTGA
GTTATGAATACAAAGTTGTGTGTATTGAGCTCTTAGTCCCAATAACATGCCCATTTGAATAAGCCTAGGTTAGTACAATA
GTTATAGAAGG-TTTGCAGCCGTCCAATACTCAGGTTTAAGTTACCTTATATCTTGATAGTTATATTGTTTAAAAAGCAC
CGATACGGGGACACGGACATGGGGATACGCATACGGGGACACGGAATACGCCATTTTCCAAAAACAGCCATACCGGGATA
CAGCATGTATATATT-------AAAAAAATG--ATGTAATAGAAACAGAAAGATAATGAGATGTGAACAAAATACTACCC
CATTTGTTGCCTCCATGCCTCCCTTTTCAAGTCCTTGAATGATTGAACTGAATGATCCTCAATTTCCTCATACTGAGGTC
CTTCCAACTTGCGAAATACACCATATGCTAGTATTAGAACATAAGCCCACAAAGGATATTTAGGATTTGGAATACCAGAC
CTCTTCACTGTCACCCACTGCCGTGCCGCTGCCCCCAGATGCCATGCTTGGTAGCCAGCAAGAGGCCAGCACCAGCAGCC
ACAAGACAGCAAGCTGCGGCAGGCAAGAACGGCAG-----------GGGGGCGAGGTGAGGGGAGGCTGTACCCGTGCCT
TGCTGCTGAGAGGAAAGGTGGCTGGAGATTCCTCTATTTCCTCCCTTTTTAAAATCCTCGAATGATCGTCAATTTCCTCA
TACTGAGGTCTTCCCAACTTGCAAAATACACCATATGCTAGTATTACAACATAAGCCCACATAGGATATTTAGGATCTGG
AATACTAGGCCTCTTCACTGTCACCCACTGCCGTGCTGCGGCCCCCAGATGCCATGCTCCCTAGCCAGCAAGAACTCAAC
ACCAGCAGTAACAAGAGCACAAGACAGCCGGCACCAGCTGCAGGCAAGAACGGCAAGAAGGGGGAAGG--AGAGGGGAGA
GATGAGGGGAAGACGTGCCCGTACTTTGCTGCTGCGAGGAAAGCTGGCCGGAGATTCCACATGTTAGAGGCGCC------
GGCGGTGGTGCAGTCGCAGGAATGTGGACTCGAGTGGAGAACAGGAGATGGGCTGCTCAATTGATGCCTGTTAGGGTTAG
TATATGGGCTGACTGGACCTTCTCGTGTCCCCGGCGTATCCCACTTGTTTAAACAGTGTCGGTGTATTTTCTTTTTTTTT
TAC-CGGAAATTACGGGATACTCCGTGACACACGTGTCCCAACCTCTCCGCGCCCCGTGTTGCACACGCATTATATGGGG
ATACAGCGACTTTTGCCGTGTCGGTGCTTTCTAGGTAAACAGACAGAAATATTCGAGGTCAAATTATGCATTACAGTTTT
GGCATTTTTCTAT-ATGGAAGGTAGAAATGATGTAGGACATGGTCATGTGGGATCAAGGGTTAACTGCTAAGCATCAAGC
TGTATGATGGTTGCTTTTGTCCTCTTCACAACTAGGAAGTAATATTTCTTTCTTCCCTTCACATTTTTCTCCATCTAGTC
AAGCAAAAGAGCATCAGTGAAGTAGCCTGTAAACTAGCTATTAGGTTGATGTAAGGCAGGATCCAAACAGCCTAATCCAT
GTGATAAGCTACTCTAGTACTCTATCTATCTGAGGCATGCCATTAACCATTACAGAGAGCAAAGTTTCCTTTCCTGGTGC
ATTAAGCTCTTAACAGCTCGTCATCTAAGTGCTTTGATAAATTGTAACAGGCCATGGCAGAAGTGTCTGCGTGATGTGTG
CACTTCTAGTCGCACTGGGATTAGCTGACGATTGGAAAGCTGCTGAGCAAATGATCCGCGAGAAGCGGCCTTCTATCAGC
ATGAACACTCTTCATCGCAAAAGCTTAGAGGAATGGTCGAAACACTTGCTTTCTCCCTCAAAAGGAAGTGGGGAATCCGA
TGTGAGTTCTGTGATTCTTTCGGACTACACCCGGAAAAAGCATTGAACTTGCGAGACACGGACTTGTTCAGTAACTGTGA
TACTTGAGAAGACTTCATGCTTTGGTGTTATCTACTGTTGTCCTAGTAAATGTCCAAGGCATTTCGTTGTCTAAGTTACT
GTCCTCGATTATGTTGTATGGATACGTGGGTATTCTATTACTGTGGCTTACAATGTTGCTCTTTTTATGCATACTGTGCA
GTGATCCTTGGGGTCATTGAATGCTTTCAAGACAAATCGTTTTGTGGGATTTT-CTTTCTTAAAATAGAGGTCACTGCTA
GCCTGCTAGATTGTCATTTATAACGGAGTGTAGTATGTCTCTCATCTGTACC--TTGCATTTTTAAGGCAGTACCATGCA
TTTAATATCTCTGCTAGGTACTCCTCGTTTGGTTCAAGTAAATGCTCAGCTATTCATAGCTTTCTTGTGCTGTACCACAG
TACCAGCCTGTCGTGTAACCATTTCATTATGTCAAAATTGTCTTGTTTTGAAGTTTCCTGACTTACCTATGTTGATTGAG
GTTATGCTGAAGTGTACTCATTTTGGTATTCTTCGATTGAGGTTATGCTGAAGTGTGCTCGTTCTGATATTTTTTGTATG
CTCACCTGGTTTTTCATCCTTTTAACCATCTGTCTGTCCTTGTTAATGAGCGGCTTTCGAGTTAGAGATTGAATTCTGAG
CTGCATGGTTGGAATGATCTTCATCTGATGGCAAGTTTCACGCCTGACAACAGTTCCGGCTTGATGCCATGATGGAGCTG
A--------------------TGGTCTGGTATTGATGGAGCATCCA--GAGTTGTTT--TTTTTACATCTGTTTATCAGG
TGTGAACCTCCATCTTCTGTTTATTGTTTTATTCATGCAAGGTTCCTTGCGCTGTTTCGACATGTGTTGCTTAACATCGC
TCTTAGATGTTACTGCTTCTTTCATGGTTTCTTTTGCTCAACAATTTGCTGATTGTTTCTACAGTACCACTGACTTGTCC
TG---------------------
>SNPs
------------------S-S------------------S------------------------S---------------
-------------------------SS-SS-S--SS-S-------------------------------------S----
--------------------------------------S--S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------SSSSSSS--SS
S-----S--------------S---------S-----------------------S------SSS-SS------------
--------------------------------------------------------------------------------
-----------SS----------------------------------------------S-------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----S--------------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------------------S---------------------------------------------------------
------S-S--------S--------------------------------S-----------------------------
-------------------S--------S---------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S--------S----
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-------------SS---------------------S---S------S--------------------------------
-----------------------------------------------S-S------------------------------
-----S---------------------------------S---------------------------------S-S----
--------------S-----S--------------------------------S--------------------------
--------------------------------------------------------------S----S------------
--------------------------------S---------------------SS--S---------------------
-----------------------------------------------S--S------------S----------------
------------------------S-----------S--S----------------------------------------
----------------------------------------------------------------S-------S-------
-------------------------------------S------------------------S-----------------
-----------S---------S----------------------------S-----------------------------
--------------------------------------------------------------------------------
--S--------S---SSSSSSS-----S-------------S--------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S--S-S-------------------
-----------------------------------------------------------SS----S---------SS---
--------------------------------------------------------------------------------
--------------------------------------S-----------------S-----------------------
----------------------------------S------S------------------S-------------------
--S--S-----------------S-------S--------------------------------------SS-------S
SS---S----------------------------------S--------------------------S------------
----S------------S--------------------------------------------------------------
-------------S------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------S----------------S-------S----------------------------
---------------------------------------------------------------------------S----
-----------------------------------------S--------------------------------------
----------S--S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------S----------------------------------
S-------------------------------------------------------------------------------
-------------S---------------------------S----------SS--------------------------
---------S----------------------------------------------------------------------
S-------------------------------S----S-----------------------------------------S
--------------------------------------------------------------------------------
--------S--------------------------------S----------------S--------S------------
-------S---------------------S---S---------S------------S-----------------S-----
------------------------------------------------------------------------------S-
-----------------------------------------------------------------------------S--
----------------------------------S--------------------------S---S------------S-
---SSSSSSSSSSSSSSSSSSSS
>forward_787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------CGTTCGTTCTGCTTTGGTGG-------------
--------------------------------------------------------------------------------
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-----------------------
>reverse_2760
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TCGTTTGGCCTGGTTTAGACT--------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_1996
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CCGCAGTCATTGATTGCACC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>reverse_4006
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----TGGCTGACTGGACCTTCTTG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------
>forward_3962
--------------------------------------------------------------------------------
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----------------------TGTGGACTCGAGGGGAGAAT--------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>reverse_5844
--------------------------------------------------------------------------------
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---GGCACATTTTCATCAGCGGT
