>input_sequence_27702
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---ATGGCTGTCGCCTCCCCTC------------GCCGCGGC------------GGCGCCGTCGCTCTCCTCCTCCTCCT
CCCCGTCCTCCTCCTGGCG---------CCGGGCGCGGCTGGCTTCAACACCGAGTTCGAGGAGGACAAATCGCCCAAGC
TCCCCCGCTGCAACAACCCCTTCCAGAAGGTGCCCGCCGATCGTCGG-TTGTACTATCAATCATCCATCCCGGCGAGTTC
ACTAATCACATTTA----------------------CGCGCAGGTGAAAGTGGTGTACTGGGTGGACGGCGAGCAGATGA
GCGCCCTGATCGGGATGACGGCGAGGTTCGGCGGGATGGTGCCGGACACGGCGTCCGCCGCCGAGAGGCTCCCCGCCGTG
ATTCCCAGCTCCAAGACCGGCTGCCAGAAGTCCCCGCAGGCAATTAAACCACTCTCCCCGCCAGCGCGCGCGCGCACAG-
--CACACACGCACGCAC----ATCTGTTCTGAGCTGCATTTCCTTCGCTGCAGCTGGCTGGCAACATCGCCGTGACGGAG
CGCGGCGAGTGCACGTACCTCGAGAAGGCGAACGCGGCCGCGTCCAGCGGCGCCAAGGCGCTGATCATGGCCAACGACAT
CGATGGTCAGCCATCTGCTTCGAT--CATTATCCATTACATT-----------------------------ATCAGTGCG
TGCGAGCGGAGCTGACGAGCAGAGCTCTTTG---GGCTGGCTGGCAGATGTGGGGAAGATGGTGTGCAGCAAGAACGACA
CGGCGCTCGACTTCAAGATCCCGGTCGTGATCGTGTCGCGGTCCAATGGGCTCAAGATCTTCGAGGCCATGGACGGCGCG
AAGAAGGGTGAGCACACCTGAA----TCGTAAATCAGTTTGTCGCCATATATACTAC-----TACTCGTATACTAGTACA
TGTGATTTGCGGCGACCGATTATGTGCGGGCTCAGCTTGGTTGATTTGCAGTGGAGATGCAGCTCTACTCGCCCAACAAG
GCGGCCTTCGACGGCGCCATCCCTTTCCTCTGGCTAATGGCCGTCAGCACCACCGCCTGCGCCGCCGTCTGGACCGCCGT
CGTCGTCGGCGAGGAGGTAAGAA---ATTAAAACAAAAAGATCGTTTCGTTTCAACAGATTTCATGCATGGCGGCAGTAT
CATCATTCATATGGATGAAACGGCTGGAC------CGACCGACCGCGTGTGTGCAGGAGAAGAAGGCTCCTTCGGGGGAC
GGCGAAGGAGACCAGGAGGCTCCCAAAACCGAGGAGCCTGAGATCGTGGAGCTGCAGGCCGAGACGGCGTTCGTGTTCGT
CATCGTGTCCTCCTGCGTCCTGCTCTTCCTCTTCTTCTTCAACTCCATCTGGTCCGCGTGGTTGATGGTCGGCCTCTTCT
GCCTCGGCGGTCTCCAGGTAATCACATGGTC---------GATCCATTGTGGCTTGTTTCATCTCTT----TTCTGACGG
CCTGCCCCTGTGCATTTCACATTCAGGGCTTGCACTTCCTTGCGTCGACACTCATTGTCAGGTA----------------
----------TAGATCTCAAATTCATCTGAATTCTTGGATCATTATCTTCCATCTTCTATATTTTTTCTGAGGGACATCG
TCTGGCGTCTTAATTTGATGTGGGTGGGCAGAGCATGCAAGAAGTGCGGCGACACGAAAATAAAGCTCCCGGCGGTCGGG
AACGTGACGGCGGTGACGCTCGTCGTGCTGCCGATAGCGCTGTTCATCGTCATCATGTGGGCGACGCACCAGAGCTCGCC
GTTCGCCTGGGTTGGTCAGAACCTCATGGTACGTCGTCAAAGAAAAT----------------TTGTCAAATTCCAGCGT
TTGC----TTTCATTTGATTTCCATGTGTTTT-----ACTTGATGCTTGATTCTT--TTTTTTTCCTAGGGCATCGGCAT
GATGATCCTCGTATTGCAGATAGTGCAAATGCCGAACATAAAAGTAAGAAGACCACCATCGCCATCGCCATGGACATTCA
TTG--------TAGCTACTCTGGCTAAGCAATTGGAGTGATCTTGCACAT---------------------TTTTAGGTT
GCGTCGGCGCTTCTGATCAGCGCGTTTCTCTACGACATATTCTGGGTGTTCATCTCGCCCTTGATATTCAAGAAGAGCGT
CATGATCACGGTAGGTTTTC----TCTCACAGTAGCAAACTGGACAAAACCCCTGTATAACCCCTGCAGTGATCCGATTC
CGATCACAACGCGATCAGTAAGTGCTTACGACGCGTGTGCGACATGTGATGTAGGTTGCCAAGGGCACGGACGACGGGCC
GAGCCTGCCGATGGTCCTGAAGATGCCCAAGGAGTTCGACGTGTGGAACGGCTACGACATGATCGGCTTCGGGGACATCC
TCTTCCCTGGGCTCCTCGTCGCCTTCAGCTTCAGGTAAGAAGCACGGGGCCTGAATCCCCACCTTCCTTCCTCTGTTGGA
CACAACACAACATAATTACCGGCTGCTG---------CTGGGCTGCATGATGCAGATATGACAGAGCACACGGCAAGGGT
GTGGCCAACGGTTATTTCCCCTACGTCATGATCGGCTACGCGTTTGGTATGCCCAATTTCCTGAACCTCGTGACAACAAC
CTAGTGCCATCAACATTAGGAAGCTGTTGCTAACTGATATAACTACCCCAAAATTGACGATGTAGGCCTGTCATTCACGT
ATGTTGGCCTGTACCTGATGAAGAGCGGCCAGCCGGCCCTGCTCTACCTCGTCCCCTGTACGCTAGGTACCATTGCCAAC
CAGCCCAGTCCGGCCATGGCGCCAACATGCAGAA-TCTCGAGCTCA-------------TATGGGTTGATCTTGTGGTCT
GAAATTGGTCTTGCAGGAACCATCGTTGGGCTGGGCGCGCAGCGAGGGGAGCTCAGCCAGCTCTGGAACGCCAAGGCATA
G-------------------------------------------------------------------------------
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---
>chr3A_1_TraesCS3A01G420400
ACTCTCAAGTTTGTCAAATGGGTGGACATACAAAC----ATTGTGCCTATGATGACCAAACCTACAAACATATAGTCGAA
CCACATCACAGTTTATTGAAAATGGCTAATAAGTTCAATGGGATAAATTTGAAAAATTACAAA-ATACAACCACACAAAT
ATTTTGATAAGGGATTGCTCTCAGAATCTTCATCAGAAGAGAACAAGAATCTAGTGTAGTAAAAGGATTATGAACTCATT
TGCATTGAGGATACATTTGCAAAAAAAAAAAT---CTCACGTAATCTCCTAATTATCTCAAAATATCATTGGCCTACACT
ACTAGATGTAGTATGATGTAGTATGATGTAGTATGATGTTCAATATCATATTTCCCGAACATGATATTCAATAATTTTGA
ATGTATGGATCAACCCAACCGCCCATCAGCTCTGC----------------TCTGCCTGAGCCGCCACCTCCATCATGCC
GTTGCATCCCTGGCCATTCCTCTAAACCTTCCTACCCCAAATATTCGGGTGACTGCAGCCCCGCACCCTCCACCCGAACC
AGTTAAACATAACACCGCTTCTCCATTGATGACATTGTGCCTGACACGGTCATGAATTGGATCGGCCTCGCCGGTGGAAC
GCCGTCGCCGGCTGCATCACCCCCA-ACTCGGGCGGCACACGTGTGAGGAATCGACCGATGCAAAA-----AAGATGTTT
AGGAAATCCGAAAAT-----------------------------------------------------------------
---------------------GTTGACACTAGAGCAAAGTAAGCAACACGCCAATATATACA--AAATTAACGCGGGAAC
ATCGGGCTCGGACCAACGGCAGCCA-CCCCCGGGCGGTACCAGAGCAAGTAGCTTGGCAATTGGCATGCATGCGTGCCCC
CTGGAAATAGCACACGGCGAGCGCAAGGCACGGCGCATGCAT----GCCCGCCCACCCGCGCACACAGACGACGCGCCCG
CGCAGGCTCGCTATCGCCAGGGTCGAACGACGTACGTGCGTGCGACGGCGTCTCCGGTCCTACGCGCGCCGGTCAACCCA
GCCATGGCTGTCGCCTCCCCTC------------GCCGCGGC------------GGCGCCGTCGCTCTCCTCCTCCTCCT
CCCCGTCCTCCTCCTGGCG---------CCGGGCGCGGCTGGCTTCAACACCGAGTTCGAGGAGGACAAATCGCCCAAGC
TCCCCCGCTGCAACAACCCCTTCCAGAAGGTGCCCGCCGATCGTCGG-TTGTACTATCAATCATCCATCCCGGCGAGTTC
ACTAATCACATTTA----------------------CGCGCAGGTGAAAGTGGTGTACTGGGTGGACGGCGAGCAGATGA
GCGCCCTGATCGGGATGACGGCGAGGTTCGGCGGGATGGTGCCGGACACGGCGTCCGCCGCCGAGAGGCTCCCCGCCGTG
ATTCCCAGCTCCAAGACCGGCTGCCAGAAGTCCCCGCAGGCAATTAAACCACTCTCCCCGCCAGCGCGCGCGCGCACAG-
--CACACACGCACGCAC----ATCTGTTCTGAGCTGCATTTCCTTCGCTGCAGCTGGCTGGCAACATCGCCGTGACGGAG
CGCGGCGAGTGCACGTACCTCGAGAAGGCGAACGCGGCCGCGTCCAGCGGCGCCAAGGCGCTGATCATGGCCAACGACAT
CGATGGTCAGCCATCTGCTTCGAT--CATTATCCATTACATT-----------------------------ATCAGTGCG
TGCGAGCGGAGCTGACGAGCAGAGCTCTTTG---GGCTGGCTGGCAGATGTGGGGAAGATGGTGTGCAGCAAGAACGACA
CGGCGCTCGACTTCAAGATCCCGGTCGTGATCGTGTCGCGGTCCAATGGGCTCAAGATCTTCGAGGCCATGGACGGCGCG
AAGAAGGGTGAGCACACCTGAA----TCGTAAATCAGTTTGTCGCCATATATACTAC-----TACTCGTATACTAGTACA
TGTGATTTGCGGCGACCGATTATGTGCGGGCTCAGCTTGGTTGATTTGCAGTGGAGATGCAGCTCTACTCGCCCAACAAG
GCGGCCTTCGACGGCGCCATCCCTTTCCTCTGGCTAATGGCCGTCAGCACCACCGCCTGCGCCGCCGTCTGGACCGCCGT
CGTCGTCGGCGAGGAGGTAAGAA---ATTAAAACAAAAAGATCGTTTCGTTTCAACAGATTTCATGCATGGCGGCAGTAT
CATCATTCATATGGATGAAACGGCTGGAC------CGACCGACCGCGTGTGTGCAGGAGAAGAAGGCTCCTTCGGGGGAC
GGCGAAGGAGACCAGGAGGCTCCCAAAACCGAGGAGCCTGAGATCGTGGAGCTGCAGGCCGAGACGGCGTTCGTGTTCGT
CATCGTGTCCTCCTGCGTCCTGCTCTTCCTCTTCTTCTTCAACTCCATCTGGTCCGCGTGGTTGATGGTCGGCCTCTTCT
GCCTCGGCGGTCTCCAGGTAATCACATGGTC---------GATCCATTGTGGCTTGTTTCATCTCTT----TTCTGACGG
CCTGCCCCTGTGCATTTCACATTCAGGGCTTGCACTTCCTTGCGTCGACACTCATTGTCAGGTA----------------
----------TAGATCTCAAATTCATCTGAATTCTTGGATCATTATCTTCCATCTTCTATATTTTTTCTGAGGGACATCG
TCTGGCGTCTTAATTTGATGTGGGTGGGCAGAGCATGCAAGAAGTGCGGCGACACGAAAATAAAGCTCCCGGCGGTCGGG
AACGTGACGGCGGTGACGCTCGTCGTGCTGCCGATAGCGCTGTTCATCGTCATCATGTGGGCGACGCACCAGAGCTCGCC
GTTCGCCTGGGTTGGTCAGAACCTCATGGTACGTCGTCAAAGAAAAT----------------TTGTCAAATTCCAGCGT
TTGC----TTTCATTTGATTTCCATGTGTTTT-----ACTTGATGCTTGATTCTT--TTTTTTTCCTAGGGCATCGGCAT
GATGATCCTCGTATTGCAGATAGTGCAAATGCCGAACATAAAAGTAAGAAGACCACCATCGCCATCGCCATGGACATTCA
TTG--------TAGCTACTCTGGCTAAGCAATTGGAGTGATCTTGCACAT---------------------TTTTAGGTT
GCGTCGGCGCTTCTGATCAGCGCGTTTCTCTACGACATATTCTGGGTGTTCATCTCGCCCTTGATATTCAAGAAGAGCGT
CATGATCACGGTAGGTTTTC----TCTCACAGTAGCAAACTGGACAAAACCCCTGTATAACCCCTGCAGTGATCCGATTC
CGATCACAACGCGATCAGTAAGTGCTTACGACGCGTGTGCGACATGTGATGTAGGTTGCCAAGGGCACGGACGACGGGCC
GAGCCTGCCGATGGTCCTGAAGATGCCCAAGGAGTTCGACGTGTGGAACGGCTACGACATGATCGGCTTCGGGGACATCC
TCTTCCCTGGGCTCCTCGTCGCCTTCAGCTTCAGGTAAGAAGCACGGGGCCTGAATCCCCACCTTCCTTCCTCTGTTGGA
CACAACACAACATAATTACCGGCTGCTG---------CTGGGCTGCATGATGCAGATATGACAGAGCACACGGCAAGGGT
GTGGCCAACGGTTATTTCCCCTACGTCATGATCGGCTACGCGTTTGGTATGCCCAATTTCCTGAACCTCGTGACAACAAC
CTAGTGCCATCAACATTAGGAAGCTGTTGCTAACTGATATAACTACCCCAAAATTGACGATGTAGGCCTGTCATTCACGT
ATGTTGGCCTGTACCTGATGAAGAGCGGCCAGCCGGCCCTGCTCTACCTCGTCCCCTGTACGCTAGGTACCATTGCCAAC
CAGCCCAGTCCGGCCATGGCGCCAACATGCAGAA-TCTCGAGCTCA-------------TATGGGTTGATCTTGTGGTCT
GAAATTGGTCTTGCAGGAACCATCGTTGGGCTGGGCGCGCAGCGAGGGGAGCTCAGCCAGCTCTGGAACGCCAAGGCATA
GG---AGAGCGTCACCGTGGATGGAACACTCCGTAGTACG---------TAGTTGACACCCAGCCTTGGCTCCGGGCGTA
CGGTGGCCTCGAGAGCTACAGATCCTCTCAAGTTAATCCGGCAAAAGAAAGATGAAACATCTGTACTGTAATTTCGTAGC
GATTGTTAGTGTGTCCATATGTTAATTGTA----GGGTGCAGGTTAATTACCCATGTA---TTTATACGATGTTATAGTA
GTACACTATACTATACTAGTAGCTGTTAGTAATAC-TGTTGTATAAGACGAGATGGCACGCAACTCTGTCCAATCTTCCC
TAAGAACAAGCTCTTGATCCAAATCATA----------GCCACTAGTAGTAGTAAGTAGATTACGTAGTCTCTACATGCC
GGAGATCGTGTCAACTTGGC------------TCCATCCATCCATCAAGCTTCTCATGGCGAGCTTGCATTGCATGCCTA
CTGCACTGGCGCTTGCAGTGTCACCACGATCGGGCTCACCACGGCGTGCCTGCCGTCGCCCCACGTCAGCGCCCCGCTCC
TCACCAGGGAGCTGCCGGGCTCCATCCTCGCCCGCGCCGCGGCCTCCACGTGCACCGTGAAGCTCAGCTTCTGCCCGTCG
CGCCGGAACGCCAGCCGGTCGGGCCGCACCGTGACATTGCACCCCTCCGGCGACCTCACGGTCGCGCGGTAGGCCGACCT
GCCGCCGCCCACGTTGGTCACCGTCCGGATGAAGTGGGTCCTCATCTTCGCCCTCGCGCCGTCCGCCACGAACGTGACGG
AGAGGGACGGGTAGTTGAGGTTGCCGGCGTGCCCGGCGCGGCGCGCGCCCCGGCAGTCGGCCTGCCGCCGCGTGATCGCC
CGGATGTTCTGCCCCGTGTAGTTGAGGTTGCAGAGGAAGCTGACGTAGTCCGCCGGCGCGATGTCGTAGACGAGGCCCGG
GTCCATGGCGCGCATCGGGTCCACGTGCCCCGCGCCGAAGTCGAACACGTCCGCCACCTTGCCGGTGGACTCGTCGAGCA
TCG
>chr3D_1
ACTCTCAAGTGTGTCAAATGTGTGCACATACATACAAATATTGTGCCTATGACGACCAAACCTACAAACATATAGTCGAA
CCACATCACAGTTTATTGAAAATGGCTAATAAGTTTAATGGGATAAATTTGAAAAATTACAAACATACAACCACACAAAT
ATTTTGATAAGGGATTGCTCTCAGAATCTTCATCAGAAGAGAACAAGAATCTAGTGTAGTAAAAGGATTATGAACTCATT
TACATTGAGGATACGTTTGCAAAATATATTTTTTCCTCACGTAATCTTCTAGTTATCACAAAATATCATTAGCCCATACT
TGTACCACTA--------------GATGTAGTATGATGTTCAATATCACATTTCTTGAACATGATATTCAATAATTTTGA
ATGTATGTATCAACCCAACCGCCCACCAGCCTTGCCCACGCCTCGCCGCCGTCTGCCTGAGCCGCCGCCTCTGCCGTGCC
GTTGCATCCCTAGCCATTCCTCTAAACCTCCCTACACCAAATATTCTGGTGGCTACGGCCCCGCACCCTCCACCCGAACG
AGTTAAACATAGCGCCGCTCTTCCATCGGTGACGTTGTGGCTGACACGGTCATG-----GATCGGCCTCGCCGGTGGAAC
ACCGTGGCCGGCTGCACCACCCCGCGACTCGGGCGGCACACATGTGAGGAATCGACTGATGCAAAAAAAAAAAAAAGTTA
CAGAAATCCGAAAATGTTGACAGTCTCCGAAACAGATTTCGAAATTTACAAAATTTTGGAAATTTCGTAGGTTTCGAGGG
TCATCGAAATTCGAAACCTTGGTTGACACTAGAGCAAAGTAAGCAACAAGCCAATATATATACGAAATTAACGCGGGAAC
ATCGGGCTCGGACGAACGGCAGCCACCCCCCGGCCGGTACCAGAGCAAGTAGC-------TTGGCATGCATGCGTGCCCC
CTGGAAATAGCACACGGCGAGCGCAAGGCACGGCGCATGCATGCCCGCCCGCCCGCCCGCGCACACACACGACGCGCCCG
CGCAGGCCCGCTATCGCCAGGGACGAACGACGTACGTGCGTGCGACGGCGTCTCCGGTCCTACGCGCGCCGGTCTACCCA
GCCATGGCTGTCGCCTCCCCTCGCCGCCGCCGCGGCCGCGGC------------GGCGCCGTCGCTCTCCTCCTCCTCC-
--CCGTCCTCCTCCTGGCG---------CCGGGCGCGGCAGGCTTCAACACCGAGTTCGAGGAAGACAAATCGCCCAAGC
TCCCCCGCTGCGACAACCCCTTCCAGAAGGTGCCCGCCGATCGATCGATTCGACG---AATCATCCATCATGGCGAGTTC
ACTGATTACATCTA----------------------CGCGCAGGTGAAAGTGGTGTACTGGGTGGACGGCGAGCAGATGA
GCGCCCTGATCGGGATGACGGCGAGGTTCGGCGGGATGGTGCCGGACACGGCGTCCGCCGCCGAGAGGCTCCCCGCCGTG
ATTCCCAGCTCCAAGACCGGCTGCCAGAAGTCCCCCCAGGCAATTAAACCACTCTCCCTGCCGGCGCGCGCAGACACACA
CACACACACGCACGCCC----ATGTGTTCTGAGCCGCATTTCCTTCGCTGCAGCTGGCTGGCAACATCGCCGTGACGGAG
CGCGGCGAGTGCACGTACCTCGAGAAGGCGAACGCGGCCGCGTCCAGCGGCGCCAAGGCGCTGATCATGGCCAACGACAT
CGACGGTCAGTCATCTGCATCATTTCCATCATCCATTACAACTGCACGCACGCCATAG----ACACAGGGCACCGGTGCG
TGCGAGCTGAACTGACGAGCAGAGCTCTTTGGGCGGCTGGCTGGCAGATGTGGGGAAGATGGTGTGCAGCAAGAACGACA
CGGCGCTCGACTTCAAGATCCCGGTCGTGATCGTGTCGCGGTCTTCCGGGCTCAAGATCTTCGAGGCCATGGACGGCGCG
AAGAAGGGTGAGGACACCTGAA-TCATCATAACTCAGTTGGTCGCCATACATACTGC-----TCCTTCTACTACA-----
--TGATTTGCGGCGACCGATTATGTGCGGGCTCAGCTTGGTTGATTTGCAGTGGAGATGCAGCTCTACTCGCCTAACAAG
GCGGCTTTCGACGGCGCCATCCCTTTCCTCTGGCTCATGGCCGTCAGCACCACCGCCTGCGCCGCCGTCTGGACCGCCGT
GGTCGTCGGCGAGGAGGTAATAAGAAATTAAAACAAAAAGATGGTTTCGTTTCAACAGATTTCATGCACGGCGGCAGTAT
CATCATTCATATGGATGAAACGGCTGGACCGCGACCGACCGACCGCGTGCGTGTAGGAGAAGAAGGCTCCTTCGGGGGAC
GGCAAAGGAGACCAGGAGGCTGCCAAACCCGAGGAGCCTGAGATCGTGGAGCTGCAGGCCGAGACGGCGTTCGTGTTCGT
CATCGTGTCCTCCTGCGTCCTGCTCTTCCTCTTCTTCTTCAACTCCATCTGGTCCGCCTGGTTGATGGTCGGGCTCTTCT
GCCTCGGCGGCCTCCAGGTAATCACATGGTC---------GATCCATCGTGGCTTGTTCCATCTCTG----TTCTGACGG
CCTGCCCCTGTATATTTCACGTTCAGGGCTTGCACTTCCTTGCGTCGACACTCATTGTCAGGTACAGTATATAGATGACC
CGCTGACACTTAAATCTCAAACTCATCTGAATTCTTGGATCATTCTCTGTCA----------------------------
-------TCTTAACTTGATGTGGATGGGCAGAGCATGCAAGAAGTGCGGCGACACGAAGATAAAGCTCCCGGCGGTCGGG
AACGTGACGGCGGTGACGCTCGTCGTGCTGCCGATAGCGCTGTTCATCGTCATCATGTGGGCGACGCACCAGACCTCGCC
GTTCGCCTGGGTTGGCCAGAACCTCATGGTAGGTCGCCAAAGAAAAGAAAAGAAAAGAACAAGTTGTTAAATTCCACCGT
CTGT----TTCTATTTGATTTCCATGTGTTTTTACTTACTTGATGCTTAATTAATTCTTCTTTTTCCAGGGCATCGGCAT
GATGATCCTCGTGTTGCAAATAGTGCAAATGCCAAACATAAAAGTAAGACCAGCG---------TCACCATGAACATTCA
TTC--------TAGCTACTCTGGCTTGTCAATTGCATTGATCTTGCGCAT---------------------TTTTAGGTT
GCGTCGGCGCTTCTGATCAGCGCGTTTCTCTACGACATATTCTGGGTGTTCATCTCGCCCTTGATATTCAAGAAGAGCGT
CATGATCACGGTAGGTTTTC----TCCCACTATCGCAAACTGT---AAATCCCTGCATAACACCTGCAGGT--------G
ATCTGGTACTTAGGACG--------------CGTGTGTGG---ATGTGATGTAGGTTGCCAAGGGCACGGACGACGGGCC
GAGCCTGCCGATGGTCCTGAAGATGCCCAAGGAGTTCGACGTGTGGAACGGCTACGACATGATCGGCTTCGGGGACATCC
TCTTCCCTGGGCTCCTCGTCGCCTTCAGCTTCAGGTAAGAAGCACAGGGCCTGAATCCCCACCTTCCTCTGTTGG-----
----ACACAACATAATTACCAGCTGCTGCTGCTGCTGCTGGGTTGCATGATGCAGATATGACAGAACACACGGCAAGGGT
GTGGCCAACGGTTATTTCCCCTACGTCATGATCGGCTACGCATTTGGTATGCCCAATTTCCTGAATCTCGTGATAACAG-
-------------CATTAAGAAGCTGTTGCTAACTGACATAACTACCTGAAAATCGACAATGCAGGCCTGTCATTCACGT
ATGTTGGCCTGTACCTGATGAAGAGCGGCCAGCCGGCCCTGCTCTACCTCGTCCCCTGTACGCTAGGTACCATTACCAAG
CAGCCCAGTCCGGTCATGGAGCCAACTTGGAGAA-TTTCGAGCTCTTGGCATGTAGTACTATGGGTTAATCTTGTGGTCT
GAAATTGATCTTGCAGGAACCATCGCTGCGCTGGGCGCGCAGAGAGGGGAGCTCAGCCAGCTCTGGAACGCCAAGGCATA
GCACTATAGCAGTATCGTGGATGGAATGGAATGGAATGCTCCTACTCCCTAGTTGACAGCCAGACTTGGCTCCAGGCGTA
CGGTGGCCTCGAGAGCTACAGATCCTCTCAAGTTAATCCGGCAAAAGAAAGATGAAACATGTGTAAT----TTTCGTAGC
CATTGTTAGTGTGTCCATATGTTAATTGTA----GGGTGCAGGTTAATTAACCATGTACTATTTATACGATG--------
-----CTATGCTATACTAGTAGCTGTTAGTAATAC-TGTTGTATGAGACGAGATGGAACGCAACTCTGTCCC--------
-AAGAAAAAGCTCTTGATCCAAATCATATATGATCATAACCACTAGTAGTAAGTAC-----GTAG-----TCTACACGCC
GGAGATCGTGTTAACTTGGC------------TCGATCGAGCTTTTCAACGAGCCGGCC---------------TGCCTA
CTGCACTGGCGCTTGCAGTGTCACCACGATCGGGCTCACGACGGCGTGCCGGCCGTCGCTCCACGTCAGCGCCCCGCTCC
TCACCAGGGAGCTCCCGGGCTCCATCTTCGCCCGCGCCGCGGCCTCCACGTGCACCGTGAAGCTGAGCTTCTGCCCGTCG
CGCCGGAACGCCAGCCGGTCGGGCCGCACCGTGACATTGCACCCCTCGGGCGCCCTCACGGTGGCGCGGTACGCCGACCT
GCCGCCGCCCACGTTGGTCACCGTGCGGATGAAGTGGGTCCTCATCCTCGCCTTCGCGCCGTCCGCCACGAACGTGGCCG
ACAGGGACGGGTAGTTGAGGTTGCCGGCGTGGCCGGCGCGGCGCGCGCCCCGGCAGTCGGCCTGGCGCCGCGTGATCGCC
CGGATGTTCTGCTCCGTGTAGTTCAGGTTGCAGAGGAAGTTGAGGTAGTCCAGGGGCGCGATGTCGTAGACGAGGCCCGG
GTCCATGGCGCGCATCGGGTCCACGTGCCCCGCGCCGAAGTCGAACACGTCCGCCACCTTGCCGGTGGACTCGTCG----
---
>chr3B_837
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---------------------------------------------------------------------------GCCCC
CTGGAAATAGCACACGGCGAGCGCAAGGCACGGCGCATGCAT----GCCCGCCCGCCCGCGCACACAGACGACGCGCCCG
CGCAGGTCCGCTATCGCCAGGGACGAACGACGTGCGTGCGTGCGACGGCGTCTCCGGTCCTACGCGCGCCGGTCAACCCA
GCCATGGCTGTCGCCTCCCCTC------------GCCGCGGCCGCGGCCGCGGCGGCGCCGTCGCTCTCCTCCTCCTCC-
--CCGTCCTCCTCCTGGCGTGCCGGGCGCCGGCCGCGGCAGGCTTCAACACCGAGTTCGAGGAAGACAAATCGCCCAAGC
TCCCCCGCTGCGACAACCCCTTCCAGAAGGTGCCCGCCGATCGACCGATTCTACTGTCAATCATCCATCCCGGCGAGCTC
ACTAATTACGTTTACGCGCCCATGCATGCATGCGTGCGCGCAGGTGAAAGTGATGTACTGGGTGGACGGCGAGCAGATGA
GCGCCCTGATCGGGATGACGGCGAGGTTCGGCGGGATGGTGCCGGACACCGCGGCCGCCGCCCCGAAGCTCCCCGCCGTG
ATTCCCAGCTCCAAGACCGGCTGCCAGAAGTCCCCCCAGGCAATTAAACAACTCTCCCTGCCAGCGCGCGCGCGCACAG-
--CATACACACACGCCCACATATCTGTTCTGAACTGCATTTCCTTCGCTGCAGCTGGCTGGCAACATCGCCGTGACGGAG
CGCGGCGAGTGCACGTACCTCGAGAAGGCGAACGCGGCCGCGTCCAGCGGCGCCAAGGCGATGGTCATGGCCAACGACAT
CGACGGTCAGTCATCTGCACCATTTCCATCATCCATTACAACTGCACGCACGCCACAAACAAACACAGGGCATCGGTGCG
CGCGAGCGGGACTGACGAGCAGAGCTCTCT---CGGCTGGCTGGCAGATGTGGGGAAGATGGTGTGCAGCAAGAACGACA
CGGCGCTCGACTTCAAGATCCCGGTCGTGATCGTGTCGCGCTCCAACGGGCTCAAGATCTTCGAGGCCATGGACGGCGCG
AAGAAGGGTGAGGAGACCTGAACTCATCGTAAATCAGTTGGTCGCCGTATATATATACTACGTACTCGTATAC---TACA
TGTGGTTTGCGGCGACCGATTATGTGCGGGCTCAGCTTGGTTGATTTGCAGTGGAGATGCAGCTCTTCTCGCCGAACAAG
GCGGCTTTCGACGCCGCCATCCCGTTCCTCTGGCTCATGGCCGTCAGCACCACCGCCTGCGCCGCCGTCTGGACCGCCGT
CGTCGTCGGCGAGGAGGTAAGAA---ATTAAAACAAAAA--TCGTTTCGTTTCAACAGATTTCATGCACGCACGGCGGCA
GCATCATCACATGGATGAAACGGCTGGG----------CCGACCGCGTGTGTGTAGGAGAAGAAGGCTCCTCCGGAGGGC
---------GACCAGGAGGCTGCCAAAACGGAGGAGCCTGAGATCGTGGAGCTGCAGGCCGAGACGGCGTTCGTGTTCGT
CATCGTGTCGTCCTGCGTCCTGCTCTTCCTCTTCTTCTTCAACTCCATCTGGTCCGCGTGGTTGATGGTCGGGCTCTTCT
GCCTCGGCGGTCTCCAGGTAACCACTTCACTTGATGTCTTGATCCATTGTGGCTTGTTTCATCTCTTGCTTTTCTGACGG
CCTGCCCCTGTACATTTCACGTTCAGGGCTTGCACTTCCTCGCGTCGACACTCATTGTCAGGTACAGTATAGAC--GACC
CGATGACACTTAAATCTCAAACTCATCTGAATTCTTGGACCATTCTGTGTCA----------------------------
-------TCTTAATTTGATGTGGATGGACAGAGCATGCAAGAAGTGCGGCGACACGAAAATAAAGCTCCCGGCGGTCGGG
AACGTGACGGCGGTGACGCTCGTCGTGCTGCCGATAGCGCTGTTCATCGTCATCATGTGGGCGACGCACCAGACCTCGCC
GTTCGCCTGGGTTGGCCAGAACCTCATGGTACGTAAAAAATGAAGG--------------AAATTGCTAAATTCCACCGT
TTGTGGTGTTTTATTTGATTTTCACGTGTTTT-----ACTTGTGC-----TTAATTCTTCCTTTTCCAGGGCATCGGTAT
GATGATCCTCGTGTTGCAAATAGTGCAAATGCCAAACATAAAAGTAAGAC---------------CACCATGGACATTCA
TTCATTCTATCTACGTACTCTCTCTTGCCAATTGCATCGATCTTGCACGTACTGGCCTCTGATGTGATCGGTTTTAGGTG
GCGTCGGCGCTTCTGATCAGCGCGTTCCTCTACGACATATTCTGGGTGTTCATCTCGCCCTTGATATTCAAGAAGAGTGT
CATGATCACGGTACATTTCATCCATCCCGCAGTAGCAAACTCT---AAATCCCTGGATAACACATGCCTGCAGGCGATCG
ATCTGGTACTTACGATG--------------CGCGTGTGAAAAATGTGATGTAGGTTGCCAAGGGCACGGACAACGGGCC
GAGCCTGCCGATGGTCCTGAAGATGCCCAAGGAGTTCGACGTGTGGAACGGCTACGACATGATCGGCTTCGGCGACATCC
TCTTCCCAGGGCTCCTCGTCGCCTTCAGCTTCAGGTAATAAAACACCACACACGGAAGGAGTTTCTGAACCCCATTCCTC
TTGAACCAAATGTTGCCGACATTCAC-----------CTGGGTTGCATGATGCAGATTTGACAGATCGCACGGGAAGGGC
GTGGGCAACGGTTATTTCCCCTACGTCATGATCGGCTACGCAGTTGGTATGTCCAAATTTCTGAACCTCGTGATAGATAA
CCACCTTTGCAAGTGCCAT-AAGCTGTTACTAACTGA--TAGCTAGCCCAAATTTGACGATGCAGGGCTGTCATGCACGT
ATGTCGGCCTGTACCTGATGAAGAGCGGCCAGCCAGCCCTGCTCTACCTCGTCCCCTGTACGCTAGGTACCATCACCAAG
CAGCCCAGTCCGGCCATGGCGCCGACTTTTAGAAATCTCGAGCTCTTGGCATGTA---CTATGGGTTGATCTTGTGGTCT
GAAATTGATGTTGCAGGAACCATCGCTGCGCTGGGCGCGCAGAGAGGGGAGCTCAGCCAGCTCTGGAACGCCAAGGCATA
GG---AGAGCATCACCGTGGATGGATTGCAAT------------------------------------GCTCAGGGCGTA
CGGTGGCCTCGAGAGCTACAAATCCTCTCAAGTTAATCCGGCAAAAGAAGGATGAAACATCTGTAAT----TTTCGTAGC
AATTGTTAGTGTGTCCATATGTTAATTGTATGTAGGGTGCAGGTTAATTAACCGTGTA---TTTATACTGCGATGTTATG
ATAT---------TACCAGTAGCTGTTAGTAGTACTTGTTGTATAAGACGAGATGGCACGCAACTCTGTCC---------
TAAGAAAAAGCTCTTGATCCAAATCATA----------ACCACTAGTAGTAAGTACAGTACGTGG-----TCTACATGCC
GGAGATCGTGTTAACTTGGCCTGCTCGATCGATCGATCGATCTTTTCAGTGAGCCGGCC---------------GGCCTA
CTGCACTGGCGCTTGCAACGTCACCACGATCGGGCTCACGACGGCGTGCCGGCCGTCGCTCCACGTCAGCGCCCCGCTCC
TCACCTGCGAGCTCCCGGGCTCCATCTTCGCCCGCGCCGCGGCCTCCACGTGTACTGTGAAGCTGAGCTTCTGCCCGTCG
CGCCGGAACGCCAGCCGGTCGGGCCGCACCGTCACATTGCACCCCTCCGGCGCCCTCACGGTGGCGCGGTACGCCGACCT
GCCGCCGCCCACATTGGTCACCGTGCGGATGAAGTGGGTCCTCATCCTCGCCTTCCCGCCGTCCGCGACGAACATGGCGG
ACAGGGACGGGTAGTTGAGGTTGCCGGCGTGCCCGGCGCGGCGCGCGCCGCGGCAGTCGGCCCGGCGCCGCGTGATCGCC
CGGACGTTCTGCTCCGTGTAGTTGAGGTTGCAGAGGAAGTTGACGTAGTCCGCGGGCGCGATGTCGTAGACGAGGCCCGG
GTCCATGGCGCGCATCGGGTCCGCGTGCCCGGCGCCGAAGTCGAACACGTCGGCCACCTTGCCGGTCGACTCCTCGAGCA
T--
>SNPs
----------S---------S---S-------S-------------------S---------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
-S------------S---------S-S-SSS----------------S---S-----S------------S---S-S---
SS--SSSS--SSSSSSSSSSSSSS------------------------S-----SS------------------------
-------S-----------------S----SS----------------------------------S----SSS-S----
-----------S-----------------S-----S----------S----S--S-S----------------------S
-----------S-S-----SS-----S-S----S-----S--------------SSSSS---------------------
S----S----------S------SS----------------S--------------S----------------S-S---S
SS------------------------------------------------------------------------------
------------------------------------------------S-----------S-------------------
-------------S-------------------S-------------------SSSSSSS--------------------
------------------------------------------------------S-------------------------
-------S--------------S---------------------------------------------------------
-------------------------------------------------------------------------------S
SS-------------------------------------S-----------------------S----------------
-----------S-------------------------------S-S----S----S------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S----------------------S---------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
---S------S-------S--SS------S----------SS--------------------------------S-----
----------S---------------------------------------------------------------------
----------------------------------------------S---------------------------------
------------S--------------------------S---------------S-----------------S-S----
-------------------------------------------------------------------------S------
-----S-----------------------------S--------------------------------------------
--------------------------------------------------------------------S-----------
-----------------------------------------------------S--------------------------
---S-----------------S----------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----------S--------S-----------------------------------------------------------
------------S--------S----------------------S---SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----------------S--------------------------------------------------------
-------------------------------------------------------------------------S------
---------------S--------------------S---------S--------------------S--------S---
---S-------S------------------------------------S---SS-----S----S-S-------------
------------S-----S--------------S---------------SS-S-SSSSSSSSSS--S-------------
--S----------------------SSS------S-S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------S---------------SSSS---S-----S-----S-------SS-SS----SS
SSS-SSS-SSSS-SS-SSSSSSSSSSSSSSS--------SS-S-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------S----S--SSSS
SSS-----------------S---------------------S----------------------S--------------
-----------------------------------------S-------------------------------S-----S
-S-SSSSSSSS-S-----S------------------S------------------------S-----------------
--------------------------------------------------------------------------S----S
--------------------------S--S---------------S----------------------------------
-------S-----------------S--S-------------S-------------------------------------
----------S---------------SS-SSS-S-S-S-S------------------S----S----------------
-----------------------------------------------------------------S-SSSS---------
S-------------------------------------------------S---------------------S-S-SS-S
S--SS----S-------------------------------------------------------------SSSSSSSSS
------S-------------------------------S------------SSS-SSSS-SSSS-SSSSS----------
-----------S----------------------S---S---SS-SS---SSSS-SSSSSSSSSSSSSSSSSSS------
---------------------------------------S----------S--------S--------------------
-------------S------------S-------------------------------------S---------------
----------------------------------------------------S---------S--------S--------
------------------------S---------------------S-----S-----------------------S---
-S--------------------------------------------------------------S---------------
------------S--------------------------S-------------S--------------------------
--------------------------------------------------------------------------------
-SS
>forward_697
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACACGTGTGAGGAATCGACC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---
>reverse_2661
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATTCAGGGCTTGCACTTCCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>forward_1764
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TCATGGCCAACGACAT
CGAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>reverse_3459
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------TAAGTGCTTACGACGCGTGT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>forward_3443
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------CTGCAGTGATCCGATTC
CGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>reverse_5053
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CCCGTGTAGTTGAGGTTGCA------------------------------------------------
--------------------------------------------------------------------------------
---
