>input_sequence_27701
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-------------------------------------------------------------------------GTGAAGG
CGACGTGACATCCGGGGTAGCCACCAGCCAGCAAGCCCAGTCCAGCGGCCGATCCGTGATCCGTGTTGGAGGGAGGAGGG
GAC--AAGATGCGGCCGCGGCTGGTGCTCTTCGGCGACTCGATCACCGAGCAGTCCTTTGCCCCCGGCGGCTGGGGCGCC
GCCCTCGCGGAGCAGTTCGCGAGGCAGGTACGTCCGCAGCG---CCCCTCCCCCTCGCCGGTCGCGCCGCCGCCGCCGCT
ACGCGTGACGTCGGGTTTTTGCTGATGATTAGGCGGATGTGGTGCTGCGCGGCCTCAGCGGGTACAACACGCGCTGGGCG
CTGAAGGTGCTGGACAGAGCCATGGAGGGGGCGGCCGACGGAGGCGCGGACCCGGCGGCGGTGACGGTCTTCTTCGGCGC
CAACGACGCCACCCTGCCCGACCAGGTGCAGGCGCACCAGCACGTGCCGCTCGGGGAGTACAAGGACAACCTACGCGCCA
TCTCTGCGTACTTCAAGGTTGCG-----------GTCCTGGAACAGGAATGCTGCTCAAGCTGAT---------------
----TTGCTTCTTCAGCTACTCATCTG---TGGTTTGGTTTTGCAGAATAAGTGGCCCTCCGCCGCCGTCATACTCATCA
CCCCTCCGCCGATCCACGAGCCGGCGAGGATTCGGTAACTGATAGCCCCCTCACCTTGCCGATATCATACTTTTACTGCT
TTATTG-------------------GTGGTCAGGTCAACCAGGATCCACTGGATATCCTTATGGGTTTCCTTATGTTGAT
TCCCTTGTGGCTTATGGGTTTACCTTTGCTGTATTCCCTTGTGGGTTTCCTTTTTCTATATTCCATATACCATTGTGGAT
GCGGGCAGTCACTTGTGTTTGCAGTGATTTATGTCAATCAAAACTGTTTATCTCAACCACAATGTTAAGAAATTGGGCTG
AACTTACTAAGTGTACACAGTGTGTGTTTAGTATTCGGCCTATGTGCATCTATTTAACAAGTTCATTAGGTTTAGTTCCT
TGTGTGTTCCCTGTATTTTCAATCGAAATTGCGACAATTTCAACAGTGTGGAGTGTGCTATTGGGCTTTGTATATATCCT
GTTATCCAGTTGCCAGGTGGTGGCCTGTGGTCTGGCCTGGAGATTTCTTCCAAGCAAATTATATAAATTGTACCTTTTGG
CAAAGCAGATTCGCATGCAAACCACACTTATTCCATATCTTTCCATGCAGAGACATATATGGAGATAATGACCCTTCAAG
ACAGCCTGAAAGAACCAATGAAGCTGCTGGCACTTATGCACAGGCGTGCATAGCTGTTGCTAAAGAATTGGGTCATCCAG
TTATAGACATCTGGACGCAGATACAGCAATTTCCTGATTGGCAAACGTCTGCATTAAGGTACAAATCTCCTTCCAAATTG
TAGGCAAAGGTAGATCATGCAAATCTGTTTGAAGAACTCTTATACCTAATGTTGACGGTGCAAAGGCTTAATAATTGCGA
GATTATTCATTCTATGAGCTGCTTTCTTTGCTGGTTATGAAAATGGCCAGATAAGATAAAAATGGTTTTCTACTTCTGTT
GAATGTT--AAAAAAATAGGTGTAAATCCTCGGGCAGACTGTTGCTCAGAATTTGCCTAACATTTTCTATCAAAA-ACAA
TGCAATTAAGTGAGGAACTTGTTTATCATGTGCAGTGCACCCCAGACCAGAATTCACCATTTTGGCTGTTGGCTATAATT
TTAGGCCACACACACACACACAAAACGTTTGTTATGTTTGGCATTCTAGGTAAATCAAGAATCACAATTATGCGAATCAG
GTGGAGCCAACCTATAGTGCTATTGAACTTTGCCAAGTGATGTTCTTGGTTATATAACGAGACTG---------------
-------------------AGAAAACAAGCTAAGAAT-----TAGTTGATAATCTGCATCCTGTGATCTCATCGTAAAAA
CAATGATTATAGCGACACATAAATC-TAACTTAATATTCTACACCATGAATAATTTTC-TAACATCTGCAGTGTAAAACA
AAAACCTGTAAATAGAGCAAATTATATGCTCTCGCTTTTGTTTCTCTAATGGAAGCTATTGAACA----CTTCTTCTTTT
AGCACGCTAATTTTTTTCCACTCTCCTATAAAATATAAAAAAGAAGATTTTGTATTGCATGTTCTCAGATACAGTAGTAT
ATAATCTGCACGCTTGTATGTCTGAATGATCTCTTACCATTTGCTAATAGCCATTAGTCTATGTGCTTGAAATAGCTTGA
AACTTCAGAAATACTCCCTCCGTAAAGAAATATAAGAGTGTTTAGAACACTACTTTAGTGGTCTAATGTACACCTTTTCC
AAGTCCTGTTCTTCATCCAGGAATATGATAATTGGTCATCAATTGACCAGTACGTTAGCAGAATATTATATTCATCTCTG
CTCTTAATGCCCTAATGTTCGGTATATAGTGGTTTTGATTATATAGTATTTTGCCGAAGCACATTCTGAACTAGTAC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GATAA
CTTTGTTATATCATGCAGTGACGGGCTACATTTCACCCCGTTCGGGAACAAAGTTTTGTTCGACGAGGTGCTGAAGACAC
TGGAAAGTGTTGGTTTCAGCCAGCACAGTCTCCGGTCCGATCTCCCTCTCTTCCATGAAATTGACCCCAAGGACCCACTG
AAAGCCTTTGAAATTTGAAGAAGGTATCCGCCGCATGGTTGGATTCCCAGAAGGAAGGCACTATGGCTCAGCTTTA-GTT
CTGAAAACAAGCTATGTTCGGTTTGGTGTCTGATTTGTTTTCTAACTTGGATATATTGTGCCGATGTTCTATGTCTGCAA
TGTTTGTGACTTGTTTTG--------------------------------------------------------------
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----------------------------------------------------------
>chr3A_1_TraesCS3A01G140200
ACCTCCATACCAAAATATAAGACGTTCTTGTAGGCTAAATACGGAGGTAATAGATGGCTGGACGCTGATGCTACTAAGTT
TGTGTTGACTTCTACTTTTATGTACATGTGGTCCACATATATACTCTGCTAGAAATTTAGATGTTTATCAGGAGTAGTAC
CCTGTGTCAGTGTCACCCTTTTTTTTTCTGCGGGGGAGTGTCACAGAGAGAATTCACATGTCCCTCAAGAAAAAAAAAGA
ATTCACATGCACGTACAGTCTACCTGTTATGTTTGACTCGGAGTGGTAAGTATCATGTCAGTGATTATTGTTACCTCAAA
ATTTTTATTGTTTTTAAATTTATTTTCCGCAAGGCACGACTTCCACATATGTTATTCCATGATGAAGCTCTGCAAGCATT
TGAATATTCATCAATGTTTGCCAAAATAAAATAAGATTTATTTTATTTTATTTTTTGGATTTTACTTTTCATCCGAGCTC
ATATGAGCTCAAGCTGAGATAGGCCGCGTCCGCGTCCTGTATTTTGATAATTTAACCTTAAAACTGCTCTCTCTCTCTCT
TGATCCATTCATTTTTCTTTCAGCGAACTCTCCATATCACACGCGCGTGGCGACATCCGACATGGCTGTTTAGCCATCTT
TTTCTTTTTCTTTTTGAGGCTGTTTAGCCATCGGTGGGAGGACGATATTTGCTCAAATCCATTCTATGTTCACGGGCCTC
AAATTCTGGGCTTTTCGTCCGGTCAGCC--AGTCATCGGCCCAACGACACACCG--------------------------
----GGAGAGCTCAACAGACGGTTGGCCAGACCCTAAAAAAAAAGGGGGGAAGACGGCTGGCCGGAACCTGCTCGCTCGT
CGGGACTCGGAAGTACCGAAGAATCCTCGCCGCTTGCCGATCA-AAGTCGCGACGAGCTCACCTAATAATATTCCACCTC
TCCCTGGAGGCCACCCAACAACCTACCACATGGCCATGGCCGTATAATACTCCACTGCAGAAGCGAGGCGCTCGTGAAGG
CGACGTGACATCCGGGGTAGCCACCAGCCAGCAAGCCCAGTCCAGCGGCCGATCCGTGATCCGTGTTGGAGGGAGGAGGG
GAC--AAGATGCGGCCGCGGCTGGTGCTCTTCGGCGACTCGATCACCGAGCAGTCCTTTGCCCCCGGCGGCTGGGGCGCC
GCCCTCGCGGAGCAGTTCGCGAGGCAGGTACGTCCGCAGCG---CCCCTCCCCCTCGCCGGTCGCGCCGCCGCCGCCGCT
ACGCGTGACGTCGGGTTTTTGCTGATGATTAGGCGGATGTGGTGCTGCGCGGCCTCAGCGGGTACAACACGCGCTGGGCG
CTGAAGGTGCTGGACAGAGCCATGGAGGGGGCGGCCGACGGAGGCGCGGACCCGGCGGCGGTGACGGTCTTCTTCGGCGC
CAACGACGCCACCCTGCCCGACCAGGTGCAGGCGCACCAGCACGTGCCGCTCGGGGAGTACAAGGACAACCTACGCGCCA
TCTCTGCGTACTTCAAGGTTGCG-----------GTCCTGGAACAGGAATGCTGCTCAAGCTGAT---------------
----TTGCTTCTTCAGCTACTCATCTG---TGGTTTGGTTTTGCAGAATAAGTGGCCCTCCGCCGCCGTCATACTCATCA
CCCCTCCGCCGATCCACGAGCCGGCGAGGATTCGGTAACTGATAGCCCCCTCACCTTGCCGATATCATACTTTTACTGCT
TTATTG-------------------GTGGTCAGGTCAACCAGGATCCACTGGATATCCTTATGGGTTTCCTTATGTTGAT
TCCCTTGTGGCTTATGGGTTTACCTTTGCTGTATTCCCTTGTGGGTTTCCTTTTTCTATATTCCATATACCATTGTGGAT
GCGGGCAGTCACTTGTGTTTGCAGTGATTTATGTCAATCAAAACTGTTTATCTCAACCACAATGTTAAGAAATTGGGCTG
AACTTACTAAGTGTACACAGTGTGTGTTTAGTATTCGGCCTATGTGCATCTATTTAACAAGTTCATTAGGTTTAGTTCCT
TGTGTGTTCCCTGTATTTTCAATCGAAATTGCGACAATTTCAACAGTGTGGAGTGTGCTATTGGGCTTTGTATATATCCT
GTTATCCAGTTGCCAGGTGGTGGCCTGTGGTCTGGCCTGGAGATTTCTTCCAAGCAAATTATATAAATTGTACCTTTTGG
CAAAGCAGATTCGCATGCAAACCACACTTATTCCATATCTTTCCATGCAGAGACATATATGGAGATAATGACCCTTCAAG
ACAGCCTGAAAGAACCAATGAAGCTGCTGGCACTTATGCACAGGCGTGCATAGCTGTTGCTAAAGAATTGGGTCATCCAG
TTATAGACATCTGGACGCAGATACAGCAATTTCCTGATTGGCAAACGTCTGCATTAAGGTACAAATCTCCTTCCAAATTG
TAGGCAAAGGTAGATCATGCAAATCTGTTTGAAGAACTCTTATACCTAATGTTGACGGTGCAAAGGCTTAATAATTGCGA
GATTATTCATTCTATGAGCTGCTTTCTTTGCTGGTTATGAAAATGGCCAGATAAGATAAAAATGGTTTTCTACTTCTGTT
GAATGTT--AAAAAAATAGGTGTAAATCCTCGGGCAGACTGTTGCTCAGAATTTGCCTAACATTTTCTATCAAAA-ACAA
TGCAATTAAGTGAGGAACTTGTTTATCATGTGCAGTGCACCCCAGACCAGAATTCACCATTTTGGCTGTTGGCTATAATT
TTAGGCCACACACACACACACAAAACGTTTGTTATGTTTGGCATTCTAGGTAAATCAAGAATCACAATTATGCGAATCAG
GTGGAGCCAACCTATAGTGCTATTGAACTTTGCCAAGTGATGTTCTTGGTTATATAACGAGACTG---------------
-------------------AGAAAACAAGCTAAGAAT-----TAGTTGATAATCTGCATCCTGTGATCTCATCGTAAAAA
CAATGATTATAGCGACACATAAATC-TAACTTAATATTCTACACCATGAATAATTTTC-TAACATCTGCAGTGTAAAACA
AAAACCTGTAAATAGAGCAAATTATATGCTCTCGCTTTTGTTTCTCTAATGGAAGCTATTGAACA----CTTCTTCTTTT
AGCACGCTAATTTTTTTCCACTCTCCTATAAAATATAAAAAAGAAGATTTTGTATTGCATGTTCTCAGATACAGTAGTAT
ATAATCTGCACGCTTGTATGTCTGAATGATCTCTTACCATTTGCTAATAGCCATTAGTCTATGTGCTTGAAATAGCTTGA
AACTTCAGAAATACTCCCTCCGTAAAGAAATATAAGAGTGTTTAGAACACTACTTTAGTGGTCTAATGTACACCTTTTCC
AAGTCCTGTTCTTCATCCAGGAATATGATAATTGGTCATCAATTGACCAGTACGTTAGCAGAATATTATATTCATCTCTG
CTCTTAATGCCCTAATGTTCGGTATATAGTGGTTTTGATTATATAGTATTTTGCCGAAGCACATTCTGAACTAGTAC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GATAA
CTTTGTTATATCATGCAGTGACGGGCTACATTTCACCCCGTTCGGGAACAAAGTTTTGTTCGACGAGGTGCTGAAGACAC
TGGAAAGTGTTGGTTTCAGCCAGCACAGTCTCCGGTCCGATCTCCCTCTCTTCCATGAAATTGACCCCAAGGACCCACTG
AAAGCCTTTGAAATTTGAAGAAGGTATCCGCCGCATGGTTGGATTCCCAGAAGGAAGGCACTATGGCTCAGCTTTA-GTT
CTGAAAACAAGCTATGTTCGGTTTGGTGTCTGATTTGTTTTCTAACTTGGATATATTGTGCCGATGTTCTATGTCTGCAA
TGTTTGTGACTTGTTTTGAAGATGTTGCAATTTGCATGTATTGAAGGCAAGTGAAAATGAGTGAAACATAAATGGACATC
TTCTGCTGTTCGTTTCGTATGCAAGAGGCACAAATTTACTTCTTGTTGAGGCACGGATTTGCTTCCCGTGGAGGCACGTA
TTTACTTCTCCTAGAGACACGAATTTACTTCCGCAAGAGGCATGACTGTGCCTCTCGAAAAAAAGAAAAAAAACATATTT
TTTTCTCTTTCGTGAGAGGCACGAATTTGCTTACGCAAGAGGCGAAAAACGCGGTGTTTTCCTTCCGCAAGAGGCACAAC
CGTGCCTCTCAGAAAGGAAAAATGTGTTCTTGGATCGGGTTTTTTTGTGAAAAAAAAAGTTTACAGAAACCTATCAACAC
GATCTAGTTTTGAAGATCTCGACACGAGGATTCATTCCAATGATGAAAACGGTTTGATATTTGAACGCACGGTTTGAGAG
ATAAAGCGCATTGAATAAACGAATCTACGGGAAAAAAAACTCCCGGGTTACAAGGCACACTGCATATGCGCCACTTGCCG
CAACCTGAAACACGGGAGTGACCTTTGCAAGGAGTACTACTTAATTAGTGCTTTGTTGTGGCCCTTCCCGCTTACATGAA
TTTTGACAGATCGAGCTTCAGTAATCCAGAACCGAGGCCTAAATTTGCTCAGGATGAACAAAGAGACTAAACTTGCTCGA
AAGAAAGAGGGGATTGAGGGGAGCTTCTGAATTCATGTACACGTTGCGTCAAATTATCGTTATTTCGTAGTCTACACAAA
TTCATTTTTACGAACCTTCTAAAAGGTTTTGGTCATGTATGTTTTCATCTTCCCTTCTATTGTGTTATACCAGTTTTTTT
GGAGTTTTTTTTACAAAATGTACAATTTATTTATAAAGTGTTCGAATTTTAGAAATGTTTGCATTTAGAAAATGTTCTCA
AATTTTTAAAACATATTTTTTTCAAAATAGTTAGCTTTCCTTACAAATGTTCCCTTCT
>chr3B_695
AAATCCACTCTGTA------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------TTCATGGGCCTC
AAATTCTGCCCTTTTCTTCCGGTCAGCCTTAGCCATCGGTCCAACCACATACGGGAGAGATCAACCACTCAAAAAAAAAA
AACCGGAGAGATCAAC-----------------------------------AGACGGCCGGCCGGAACATGCCCGCTCGT
CGGGACTCGGGAGTACCGACCAATCCTCGCCGCCTGCCGATCAGAAGTCGCGACGAGCTCACCTAATA---TTCCACCTC
TCCCTGGCCGCCACCCAACAACCTAACCA-----CATGGCCGTATAATACTCCACTGCAGAAGCGAGGTGCTCGTGAAGT
CGGCTTGATATCCGGAGTAGCCA-------GCAAGCCCAGCCCAGCGGCCGATCCGTGATCCGTGTTGGAGAGAGCGAGG
GAGAGAAGATGCGGCCGCGGCTGGTGCTCTTCGGCGACTCAATCACCGAGCAGTCCTTTGCCCCCGGCGGCTGGGGCGCC
GCCCTCGCGGAGCACTTCGCGAGGCAGGTACGTCCGCAGCACCTCCCCCCACCCTCGCCGGTTG---CGCCGCCGCCGCT
GCGCGTGACACCGGATTTTTGCTGA---TTAGGCGGATGTGGTGCTCCGCGGGCTCAGCGGGTACAACACGCGCTGGGCG
CTGAAGGTGCTGGACAGAGCCATGGAGGGGGCGGCCGACGGCGGCGCGGACCCGGCGGCAGTGACGGTGTTCTTCGGCGC
CAACGACGCCACCCTGCCCGACGAGGTGCAGGCGCACCAGCACGTGCCGCTCGGGGAGTACAAGGACAACCTGCGCGCGA
TCTGTGCCTACTTCAAGGTTGCGGCCATACAGTCCTGGA--AACAGGAATGCTGCTTTTTTCCCCGACAAAGCAGGAATG
CTGATTGCTTCTTCAGTTACTCATCTATAATGGTTTCGTTTTACAGAATAAGTGGCCCTCCGCTGCCATCATACTCATCA
CCCCTCCACCGATCCACGAGCCGGCGAGGATTCGGTAACCAATAGCCCCCTCACCTTGTAGTATCATAC--TTCACTGCT
TTATGGAGTATATGTGTATCAGTGAGTTGTCAGGTCAACCAGGATCCACTAGATATCCTTATGGAGTAG-TTATGTTGAT
TCA-------CTTATGGGTTTACTTTTGCTATATTCCCTTGCGGGTTTCCTTTTGCTATATTCCATTGTTGTTGCCTGCG
TTTC----------------ACAGTGATTTTTGTCAACCGAAACTGTTTATCTCAACCACAATGTTAAGAAATTGGGCTG
AACTTACTAAGTGTGTCGAGTGTGTGTTTAGTATTTGACCTATGTGCATCTATGCAACGAGTTCATTAGGTACAGTTCCT
TGTATGTTTCCTGTATTTTCAATTGAAATTATGACAATTTCAACAGTCTGCAGTGTACTATTGGGCTTTCTGTATATCCA
GTTATCCACTTGCTACTTGTTGGCCTGTGATCTGGCCTGAAGATTTCTTCCAAGCAAATATTATTAATTGCACCTTTTGG
CAAAGCAGATTCGTATGCAAACCACACTTATTCCATATCTTTCCATGCAGAGACATATATGGAGATAATGACCCTTCAAG
ACAGCCTGAAAGAACAAATGAAGCTGCTGGCACTTATGCACAAGCATGCATAACTGTTGCTAAAGAACTGGGTCATCCAG
TTATAGACATCTGGACGCAGATGCAGCAATGTCCTGATTGGCAAACATCTGCATTAAGGTACAAATCTCTTTCCATATTG
TCGGCAAAGGTTGATTATGTAGATTTGTTTGAAGAACTCTTATGCCTAATGTTGACACTGCAAAGGCTGAATAATTGCGA
GATCATTCACACTGTAAAG----------------------------------------------------------GTT
GAATGTAAAAAAAAACTAGGTGCAAGTCCTTGGGCAGACTATTACTCAGAATTTGCCTAGCATTTTCTATCAAAAAACAA
TGCAATTAAGTGAGGAACTTGTTTATCATGTGCAGTACACCCGAGACCAGAATTCAGCATTTTGGCTCTTGGCTATAATT
TTAGGC----CACACCCAAAAAAACAGTTTGTTATTCTTGGCATTCTAGGAAAATCAAGAATCGCAATTATGTGAATCCG
GTAGAGC--ACCTATAGTGCTATTGAACTCTGCTATGTCGTGTTCTTGGTCATGCTTGGCATTCTTTTGTGGGCTTTCTG
GGCAACGTCACAAGACTGAAGAAAACAAGCTCAGAAATACTGTAGTTGATAATCTGCATCCTATGATCTCACTGTAAAAA
TAATTATTGTAGCGACACATAAATTTTAACTTAATATTCTACACCATGACTAGTTTTGGTAACTTGTGTAGTGTAAAACA
AAAAACTGTAAATAGAGCAAACTATATGCTATTGCTTTTGTTTCTCTAATGGAAGTTATTGAAGACATTCTTCTTCTTTT
AGCACACAATTTTTTAACTCTCCCC-----------AAAAAAGAATATTTTGTAGTACATGTA-----------------
-------------------------------------CATTTGCTAATAGTTATTAGTCTATGTGCTTGGACTGGCTTGA
AACATCAGAAAAACTAATT-------------------------------------------------TACACCTTTTCC
AAGTCGTGTTATTCATCCAGGAATATAATAATTGGCCATCGATTGGCCAGTACGTTAGTAGAACATTTTATTCATCTCTG
CTCTTAATGCCCTGGTGTTCGGTATATAGTGTTTTTGGTTATATAGTATTTTGCTGAAGCACATTCTGAACACGTGTGTA
CTCCCTCCGTTCCTAAATATTTGTCTTTTTACAGATTTTAATTGGACTATCACATACGGATGTATTTAGACATATTTTAG
AGTGTAGATTCACTCATTTTGCTCCGTATGTAGCCATATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGCCA
TTTGTTGAAATCACTGGAAAGACAAATATTTAGGAACGGAGGGAGTACAATGTAACTTCCTGACCGAAAGCAGCAGATAA
CTTTGTTACATCATGCAGTGACGGGCTCCATTTCACCCCGTTCGGGAACAAAATTTTGTTCGACGAGGTGCTGAAGACAC
TGGAAAGTGTTGGTTTCAGCCAGCACAGTCTCCGGTCCGATCTCCCTCTCTTCCATGAAATTGACCCCAAGGACCCACTG
AAAGCCTTTGAGATTTGAAGAAGGTATCTGCCGCATGGTTGGATTCCCAGAAGGAAGGCACTATGACTCAGCTTTATGTT
CTGAAAACAAACTATGTT-GGTTTGGTGACTGATGTGTTCTGTAACATGGATATATTGTGCCTATGTTCTATGTCAGCAA
TGCTCGTGACTTATTTCGAAGATGTTGCA---------------------------------------------------
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----------------------------------------------------------
>chr3D_695
AAATCCACTCTGTA------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------TTCATGGGCCTC
AAATTCTGCCCTTTTCTTCCGGTCAGCCTTAGCCATCGGTCCAACCACATACGGGAGAGATCAACCACTCAAAAAAAAAA
C-CCGGAGAGATCAAC-----------------------------------AGACGGCCGGCCGGAACATGCCCGCTCGT
CGGGACTCGGGAGTACCGACCAATGCTCGCCGCCTGCCGATCAGAAGTCGCGACGAGCTCACCTAATA---TTCCACCTC
TCCCTGACCGCCACCCAACAACCTAACCA-----CATGGCCGTATAATACTCCACTGCAGAAGCGAGGTGCTCGTGAAGT
CGGCGTGATATCCGGAGTAGCCA-------GCAAGCCCAGCCCAGTGGCCGATCCGTGATCCGTGTTGGAGAGAGCGAGG
GAGAGAAGATGCGGCCGCGGCTGGTGCTCTTCGGCGACTCAATCACCGAGCAGTCCTTTGCCCCCGGCGGCTGGGGCGCC
GCCCTCGCGGAGCACTTCGCGAGGCAGGTACGTCCGCAGCACCTCCCCCCACCCTCGCCGGTTG---CGCCGCCGCCGCT
GCGCGTGACATCGGATTTCTGCTGA---TTAGGCGGATGTGGTGCTGCGCGGGCTCAGCGGGTACAACACGCGCTGGGCG
CTGAAGGTGCTGGATAGAGCCATGGAGGGGGCGGCCGACGGCGGCGCGGACCCGGCGGCAGTGACGGTGTTCTTCGGCGC
CAACGACGCCACCCTGCCCGACGAGATGCAGGCGCACCAGCACGTGCCGCTCGGGGAGTACAAGGACAACCTGCGCGCGA
TCTGTGCCTACTTCAAGGTTGCGGCCATACTACAGTCCTGGAACACGAATGCTGCTTTTTTTCCCGGCAAAGCAGGGATG
CTGATTGCTTCTTCAATTACTCATCT--AATGGTTTCGTTTTGCAGAATAAGTGGCCCTCCGCTGCCATCATACTCATCA
CCCCTCCACCGATCCACGAGCCGGCGAGGATTCGGTAACCAATAGCCCCCTCACCTTGTAGTATCATAC--TTCACTGCT
TTAT-----ATATGGGTATCAGTGAGTTGTCAGGTCAACCAGGATCCACTAGATATCCTTATGGAGTAG-TTATGTTGAT
TCA-------CTTATGGGTTTACTTTTGCTATATTCCCTA-CGGGTTTCCTTTTGCTATATTCCATTGTTGTTGCCTGCG
T----------------TTTACAGTGATTTTTGTCAACCGAAACTGTTTATCTCAACCACAATGTTAAGAAATTGGGCTG
AACTTACTAAGTGTGTCGAGTGCGTGTTTAGTATTTGACCTATGTGCATCTATGCAACGAGTTCATTAGGTACAGTTCCT
TGTATGTTTCCTGTATTTTCAATTGAAATTATGACAATTTCAACAGTCTGCAGTGTACTATTGGGCTTTCTGTATATCCA
GTTATCCACTTGCTACTTGTTGGCCTGTGATCTGGCCTGAAGATTTCTTCCAAGCAAATATTATTAATTGCACCTTTTGG
CAAAGCAGATTCGTATGCAAACCACACTTATTCCATATCTTTCCATGCAGAGACATATATGGAGATAATGACCCTTCAAG
ACAGCCTGAAAGAACAAATGAAGCTGCTGGCACTTATGCACAAGCATGCATAACTGTTGCTAAAGAATTGGGTCATCCAG
TTATAGACATCTGGACACAGATGCAGCAATGTCCTGATTGGCAAACATCTGCATTAAGGTACAAATCTCTTTCCATATTG
TCGGCAAAGGTTGATTATGTAGATTTGTTTGAAGAACTCTTATGCCTAATGTTGACACTGCAAAGGCTGAATAATTGTGA
GATCATTCACACTGCAAAG----------------------------------------------------------GTT
GAATGTAAAAAAAAACTAGGTGCAAGTCCTTGGGCAGACTATTACTCAGAATTTGCCTAGCATTTTCTATCAAAAAACAA
TGCAATTAAGTGAGGAACTTGTTTATCATGTGCAGTGCACCCGAGAGCAGAATTCAACATTTTGGCTCTTGGCTATAATT
TTAGCC----CACACCCAAAAAAACAGTTTGTTATTCTTGGCATTCTAGGAAAATCAAGAATCACAATTATGTGAATCCG
GTAGAGC--ACCTATAGTGCTATTGAACTCTGCTATGTCGTGTTCTTGGTCATGCTTGGCATTCTTTTGTGGGCTTTCTG
GGCAACGTCACAAGACTGAAGAAAACAAGCTCAGAAATACTGTAGTTGATAATCTGCATCCTATGATCTCACTGTAAAAA
TAATTATTGTAGCGACACATAAATTTTAACTTAATATTCTACACCATGACTAGTTTTC-TAACTTGTGTAGTGTAAAACA
AAAAACTGTAAATAGAGCAAACTATATGCTATTGCTTTTGTTTCTCTAATGGAAGTTATTGAAGACTTTCTTCTTCTTTT
AGCACACAATTTTTTAACTCCCCCC-----------CAAAAAGAATATTTTGTAGTACATGTA-----------------
-------------------------------------CATTTGCTAATAGTTATTAGTCTATGTGCTTGGACTGGCTTGA
AACATCAGAAAAACTAATC-------------------------------------------------TACACCTTTTCC
AAGTCGTGTTATTCATCCAGGAATATAATAATTGGTTATCGATTGGCCAGTACGTTAGTAGAACATTTTATTCATCTCTG
CTCTTAATGCCCTGGTGTTCGGTATATAGTGATTTTGGTTATATAGTATTTTGCTGAAGCACATTCTGAACACATGT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTACAATGTAACTTCCTGACCGAAAGCAGCAGATAA
CTTTGTTACATCATGCAGTGACGGGCTACATTTCACCCCGTCCGGGAACAAAATTTTGTTCGACGAGGTGCTGAAGACAC
TGGAAAGTGTTGGTTTCAGCCAGCACAGTCTCCGGTCCGATCTCCCTCTCTTCCATGAAATTGACCCCAAGGACCCACTG
AAAGCCTTTGAGATTTGAAGAAGGTATCTGCCGCATGGTTGGATTCCCAGAAGGAAGGCACTATGACTCAGCTTTATGTT
CTGAAAACAAACTATGTT-GGTTTGGTGACTGATGTGTTCTGTAACATGGATATATTGTGCCTATGTTCTATGTCAGCAA
TGCTCGTGACTTATTTTGAAGATGTTGCA---------------------------------------------------
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----------------------------------------------------------
>SNPs
-SS----SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------
--------SS------S---------------S------S-----S---S--S---------------------------
----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------S---S-------
----------S--------SS------------S----------------------------------SSS---------
-------SS----------------S-SSSSSSS----------------------------------S----------S
--S-----S------S-------SSSSSSS----------S------------------------------S---SSS--
--S-------------------------------------S---------------------------------------
--------------S-------------------------S-------S-S-----------S-SSS-------------
S--------S----S----------SSS------------------------S---------------------------
-----------------------------------------S-----------------S--------S-----------
----------------------S-------------------------------------------------S-----S-
---S---S------------------------------------------------SSSSS-SSS---------------
----------------S---------S---------S--------------------------S---S------------
-------S-------------------------------SS-----------------SS-SSSSSSSSSS--S------
----S----------------------S----------------------S-------------SS-SSS----------
--SSSSSSSS-------------S------S----------S------------S-----------SSSSSS-SSSS-SS
SSSSSSSSSSSSSSSSS---S---------S------S-S----------------------------------------
--------------SSSS-----------------S-S---------------SS---S------------SS-------
---S----S--------------S------SS---------------S--S-----S------------S-S-------S
--------S----S-SS--S---------S---------S-------------------SS---S-----S---------
-------------S------------------------------------------------------------------
---------------S--------------------------S--S------S---------------------------
----------------------S-------S---------------S----------------------S-----S----
-S---------S---S---S-S--S------------------S------------SS----------S-----------
---S-----SS--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------S--------S------S--S----S---------S--S---------------S--------------------
------------------------------------------S-------------S----------S------------
------SSSS-----S--S-S---SS---------SS-------------S---------------------S-----S-
--S----SS--------------------S---S-S--SS----------S--SSSSS-SSSSSS---------------
-------------------------------S----S-------------------------S--------SS-------
S---S---S---------------S------------------------S--S----------S-S--S-----------
----S----------------S--------S-S----------------------S-------S----------------
-----S-S-S-----SS-SS-S-S-SSSSSSSSSSS---------S--------S-S-----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS-----------------S-S-S------
---S-------S---SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----S----S---------------S-------------S----S------------S----S---S------------
-------------SS----------------S-----S----------------S----------------SS--SS---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-------------------------------------------S---------------------------
--------------------------------------------------------------------------------
-----------S----------------S------------------------------------S--------------
----------S-------S---------S-----S----S-S----S---------------S------------S----
--S-S-------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_990
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CCACCCAACAACCTACCACA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>reverse_1922
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-CGGGCAGTCACTTGTGTTTG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------
>forward_1746
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCCCTCACCTTGCCGATATC--------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>reverse_3893
--------------------------------------------------------------------------------
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----------------------------------------------------GTTTTGTTCGACGAGGTGCT--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>forward_1941
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-CGGGCAGTCACTTGTGTTTG-----------------------------------------------------------
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----------------------------------------------------------
>reverse_4091
--------------------------------------------------------------------------------
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----------GCTATGTTCGGTTTGGTGTCTG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>forward_2684
--------------------------------------------------------------------------------
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------------------------AATCCTCGGGCAGACTGTTG------------------------------------
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----------------------------------------------------------
>reverse_4478
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAC
CGTGCCTCTCAGAAAGG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
