>input_sequence_27555
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----------------ATGCCGAGCGTCGGCGTGAAGATCTACAGCGTCTTCTTCAAGCTGCTGCTGCGCCACCGCCTCC
AGTCGCTCGCCGCCGCCGCCGGCGCCGCCGCCGACGGC---------GACGGCGACGCGGCCGCCTTCGGTGTCTCCTGC
CGCGCCGACGAGGCCACGGCGCCGGCCAACCCGGCCTTCTCCGCGGCCGACGGGGTCGCCTCCAAGGACCTCCACATCGA
CCCCAACTCGGCGCTCTCCCTCCGCATCTTCCTCCCCACGCCGCCGCCGCACCACCCGCACCTCCTCCACCCGCGCCGCG
CCAGCGACCCCGCCGCCGGCCAGGCGGGCGCGCCCTACCGGGGCTACCTCCCGCACGCCGTCTCCTCCCCGCGGGCCGCC
GCCTCCGCGCGCCGCAGGCTGCCCATCGTCGTGCAGTTCCACGGCGGCGGCTTCGTCACCGGGAGCAACTGCTCCGCCTC
CAACGACGCCTTCTGCAGGCGGGTCGCCAAGTTCTGCGACGCCATCGTCGTCGCCGTCGGCTACAGGCTCGCGCCCGAGA
GCCGCTACCCCGCCGCCTTTGATGACGGGGTCAGGGTGCTTAGGTGGATCGCCAAGCAGGCCAATCTCGCCATGATGAGC
AAGGTTGGGGGCGGGGTGGACACGTTCGGTGCTTCCACCGTCGAGCCCTGGATCGCTGCGCATGGTGATCCGGCAAGGTA
TAATTTAATTCGA-TTCTGTAATCTCTCCTTTTGTAATTGCATTTCTTGCTACTT--CTACTTTACTAAATGGCCAAGGA
ACATAATACTGCAGTGTGAAGTTGTCCAAAAGTGGGCAAGTCAAGCGATAGGAATTTTTATTTCATTTCTTCAATGGAAG
TTCTTGTTTGTGATTCACCAGCATTATTTCAGAAACCGCAAATGAGAATTGCGCTAGTCAAGTGAACATGTCAAAACGAT
GAAGATATAGTTCCCTAGTCTATTAGATCTGACTAGCAGCGGGTTTAGAGAGAGCTCACGAATATATCA-----------
--------------------------------------------------TTTCCCCGTGGGTTGCCATTTCTGACTAGC
AGCGGGTTTAGTGAGAGCTCACGAATATATCATTTCCCCGTGGGTTGCCATTTCTGACTAGCAGCAGGTTTAGAGAGAGC
TCATGAGTATGTCATTTCCCCGTGAGTTGCCATTCTGG-CTAGCAGCAGGTTTAGAGAGAGCTCACGAGTATG-------
-------------------------------------------------------TCATTTCCCCGTGGGTTGCCATTTC
TGACTACCAGCAGGTTTAGAGAGAGCTCATGAGTATGTCATTTCCCCT--------------------------------
--------------------------------------------------------------------------------
------------CGAGTTGCCATTTCTGACTAGCATTGGTTTAGAGACCATGAGTACGACATTTCCCCTCGAGTTGCAAT
TTCTGACTGGCAGCAGGTTTAGAGCTCAGGAGTATGTTGACTGGGGAAGATTCAATGTTTACCAGCTGACAGTTATACTC
ACTTAA-CATATGGTGTGCACTTTCTGTTATATCTTACCATTTGCGTGCACCTTAGCTTTTTGTGTGCACTCTGATCGGG
TACACAGGCTCACAACATAGAAGCATCAAATATCCAAATATTAGTTGATTTAATTTGCCAGGATTACATTCTCCAAATGA
TGTTGACATTTTGAAGATGTCAATGCAACTTTACAAGATTTGCTTGACCGTTGGCATGTGGATAGGCCTTTTCTTGGTGA
AATTTTCTAGGGCACATGTTTTCAACAAAGTTCTATATTTCGGTAGGTAGTATATGTTGAGTAAATAACTGCTAATGATG
TCACCACAGTCCAATAACCTTGAACACTAGTGAAGGCATGCAATTTTCATATTACTGATTCTGGGATTCTTTATTGGTCA
TGTTTATTGACCTAACATATTAATGAAATTGAATTGCACTGAACTGTCGGATCGAATAGATCAGTTAAAACTTACTCTGG
TCTGCTTCCTTACCTATAATGAAGATTTTATTTTAACTATGATTTCAGTAGAACCTGATGAAATTAGTACCTTTTTCGTG
CCTTTTTATTATGTCCGTGATCTCTTAAATGTGATGTACATATTGATGGACTGTCATCATCTCAAACCTTGGTTGCTTGG
TGTATCACACCTACCTGAGTTTAGACCCCTCAACAGATTAAGTGCCCACTTCAATTTAATTTCAAATAGAATAGCTGCAT
ATTTGGTAACATCATTAAATGGTTCTTGCCTTCTACC--TAAGAGACAAAAGAATATATCTAGTAATTTATTGTAAATCC
TTTTGTTTTAACTGTTGTACATTTGTGTTGCTGGAGTTTGACCAGATCACCCGTCTTTTCCTTGG-AGCAGATGTGTCCT
ACTTGGTGTAAGCTGTGGTGCCAACATTGCTGATTTTGTCACTAGGAAAGCGGTGGAAGATGCAAAGCAATTTGAGCCAG
TCAAGGTCGTTGCACAGGTTCTGATGTATCCCTTCTTCATAGGAAGTGTTCCAACACACTCGGAAATAAGGCTTGCGAAC
TCATACTTCTACGACAAATCCACATGCTTACTTGCCTGGAGATTACTTTTATCAGAGAAAGAGTTCAGCTTGGACCATCC
TGCTGCCAACCCCCTGGCCCCAGGCAGAGGAGGCCCGCCACTGAAATGCATGCCTCCAACCTTGACAATCGTTGCGGAAC
ACGACTGTATGAGGGACAGAGCAATTGCTTACTCCGAGGAACTCCGCAAGGTAAATGTGGACGCGCCAGTCCTCGACTAC
AAAGATACAGTCCATGAGTTCGCAACACTTGATGTGTTCCTCAAGACGCCACAGGCCCAGGCCTGTGCCGAAGATATTGC
CATATGGATGAAGAAATACATATCCCTGAGAGGGCACGAGTTCTCGTATTAG----------------------------
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>chr3D_1_TraesCS3D01G385800
ACGGAGACGGATAATACATATCTGGTTGTTCTCAGCTGATGGATCCTCCGGCGTGCAATCCGGCGTTGACCGTTGCCATG
GACGAGGATTTCTATACGTGCCTTCCGGAAAGCTATCTGCCTCTGTTCCAGCTGAATTGCTTAGGCTAAATTAGCATAGA
AAACG--GAGGCTACGACTAGCACCG----ACACAACAGAGAAGGAGAAAAT-GAAGGG--------------------C
AATCGTTTCGCATAAAGAAGTGCTTCCGCTGGGACACACACA---------------CGCTTTCACGTGAAACGATGGAA
TCTGGGAGTAGG------CAGGCATCGTACC-TGCACCGTTTAATGCACTCCACGTTGTTGGAGATAAAAAAAA-CCTGC
CGAATTATACTCGCTCCACC--------------AGGCGAAATGTGAGAACGGAAACTGCAAAGAGCGAACCCCAGG---
-----------------CTAGTACTAGTACCACCACCA------CCTCGCAAGGAGGGGAAGAAAAATCCACTACTGTAC
CACCAGGCGGGGTTTGAATTTGAACGACGAACGCACAGCA---------ACAGCACAGGCCACAGGCGCAGGGGGGCGAG
------AGA-----GACCGTGGTCACGTTCGGGAAGCGGCCGACGCCTGCCTGCCTGGTAGCAACCATCCAAAAATCCTC
CATCGCTTCCCCGTCTTTTCCTTCCTTCCTCGCTAGCTT--------CTCCCTCACCCACCTCCCTCTCCATTCTT----
-CCTTCCTCCTGTTTCCCGTACCATACCACCACACCACACC-----ACGCTGCTGCGCTGCCATCATCCATCCAGATAG-
----CCACCCTACCAATCGCGGTTGCTTTCCCTCGCCCCAACCACTCCAACACCGCACGGAGCCGAGCCGATCCAATCCA
ATCCGGCCCCATTAACCC-CCTCCGCGCCCGATTCCAATCGCGCCTCC-GCCAGCTCCGACCTCCTCCCGGCCGAACCCG
TCGGCGGCGATCGAGCAGATCCGGGCGCCGTCCCGTCTACCTCTCCCTGTGATGCGCGGATCCGGGCGGTGACCGGCGGC
GGGAGCGGGCG-AGCCATGCCGAGCGTCGGCGTGAAGATCTACAGCGTCTTCTTCAAGCTGCTGCTGCGCCACCGCCTCC
AGTCGCTCGCCGCCGCCGCCGGCGCCGCCGCCGACGGC---------GACGGCGACGCGGCCGCCTTCGGTGTCTCCTGC
CGCGCCGACGAGGCCACGGCGCCGGCCAACCCGGCCTTCTCCGCGGCCGACGGGGTCGCCTCCAAGGACCTCCACATCGA
CCCCAACTCGGCGCTCTCCCTCCGCATCTTCCTCCCCACGCCGCCGCCGCACCACCCGCACCTCCTCCACCCGCGCCGCG
CCAGCGACCCCGCCGCCGGCCAGGCGGGCGCGCCCTACCGGGGCTACCTCCCGCACGCCGTCTCCTCCCCGCGGGCCGCC
GCCTCCGCGCGCCGCAGGCTGCCCATCGTCGTGCAGTTCCACGGCGGCGGCTTCGTCACCGGGAGCAACTGCTCCGCCTC
CAACGACGCCTTCTGCAGGCGGGTCGCCAAGTTCTGCGACGCCATCGTCGTCGCCGTCGGCTACAGGCTCGCGCCCGAGA
GCCGCTACCCCGCCGCCTTTGATGACGGGGTCAGGGTGCTTAGGTGGATCGCCAAGCAGGCCAATCTCGCCATGATGAGC
AAGGTTGGGGGCGGGGTGGACACGTTCGGTGCTTCCACCGTCGAGCCCTGGATCGCTGCGCATGGTGATCCGGCAAGGTA
TAATTTAATTCGA-TTCTGTAATCTCTCCTTTTGTAATTGCATTTCTTGCTACTT--CTACTTTACTAAATGGCCAAGGA
ACATAATACTGCAGTGTGAAGTTGTCCAAAAGTGGGCAAGTCAAGCGATAGGAATTTTTATTTCATTTCTTCAATGGAAG
TTCTTGTTTGTGATTCACCAGCATTATTTCAGAAACCGCAAATGAGAATTGCGCTAGTCAAGTGAACATGTCAAAACGAT
GAAGATATAGTTCCCTAGTCTATTAGATCTGACTAGCAGCGGGTTTAGAGAGAGCTCACGAATATATCA-----------
--------------------------------------------------TTTCCCCGTGGGTTGCCATTTCTGACTAGC
AGCGGGTTTAGTGAGAGCTCACGAATATATCATTTCCCCGTGGGTTGCCATTTCTGACTAGCAGCAGGTTTAGAGAGAGC
TCATGAGTATGTCATTTCCCCGTGAGTTGCCATTCTGG-CTAGCAGCAGGTTTAGAGAGAGCTCACGAGTATG-------
-------------------------------------------------------TCATTTCCCCGTGGGTTGCCATTTC
TGACTACCAGCAGGTTTAGAGAGAGCTCATGAGTATGTCATTTCCCCT--------------------------------
--------------------------------------------------------------------------------
------------CGAGTTGCCATTTCTGACTAGCATTGGTTTAGAGACCATGAGTACGACATTTCCCCTCGAGTTGCAAT
TTCTGACTGGCAGCAGGTTTAGAGCTCAGGAGTATGTTGACTGGGGAAGATTCAATGTTTACCAGCTGACAGTTATACTC
ACTTAA-CATATGGTGTGCACTTTCTGTTATATCTTACCATTTGCGTGCACCTTAGCTTTTTGTGTGCACTCTGATCGGG
TACACAGGCTCACAACATAGAAGCATCAAATATCCAAATATTAGTTGATTTAATTTGCCAGGATTACATTCTCCAAATGA
TGTTGACATTTTGAAGATGTCAATGCAACTTTACAAGATTTGCTTGACCGTTGGCATGTGGATAGGCCTTTTCTTGGTGA
AATTTTCTAGGGCACATGTTTTCAACAAAGTTCTATATTTCGGTAGGTAGTATATGTTGAGTAAATAACTGCTAATGATG
TCACCACAGTCCAATAACCTTGAACACTAGTGAAGGCATGCAATTTTCATATTACTGATTCTGGGATTCTTTATTGGTCA
TGTTTATTGACCTAACATATTAATGAAATTGAATTGCACTGAACTGTCGGATCGAATAGATCAGTTAAAACTTACTCTGG
TCTGCTTCCTTACCTATAATGAAGATTTTATTTTAACTATGATTTCAGTAGAACCTGATGAAATTAGTACCTTTTTCGTG
CCTTTTTATTATGTCCGTGATCTCTTAAATGTGATGTACATATTGATGGACTGTCATCATCTCAAACCTTGGTTGCTTGG
TGTATCACACCTACCTGAGTTTAGACCCCTCAACAGATTAAGTGCCCACTTCAATTTAATTTCAAATAGAATAGCTGCAT
ATTTGGTAACATCATTAAATGGTTCTTGCCTTCTACC--TAAGAGACAAAAGAATATATCTAGTAATTTATTGTAAATCC
TTTTGTTTTAACTGTTGTACATTTGTGTTGCTGGAGTTTGACCAGATCACCCGTCTTTTCCTTGG-AGCAGATGTGTCCT
ACTTGGTGTAAGCTGTGGTGCCAACATTGCTGATTTTGTCACTAGGAAAGCGGTGGAAGATGCAAAGCAATTTGAGCCAG
TCAAGGTCGTTGCACAGGTTCTGATGTATCCCTTCTTCATAGGAAGTGTTCCAACACACTCGGAAATAAGGCTTGCGAAC
TCATACTTCTACGACAAATCCACATGCTTACTTGCCTGGAGATTACTTTTATCAGAGAAAGAGTTCAGCTTGGACCATCC
TGCTGCCAACCCCCTGGCCCCAGGCAGAGGAGGCCCGCCACTGAAATGCATGCCTCCAACCTTGACAATCGTTGCGGAAC
ACGACTGTATGAGGGACAGAGCAATTGCTTACTCCGAGGAACTCCGCAAGGTAAATGTGGACGCGCCAGTCCTCGACTAC
AAAGATACAGTCCATGAGTTCGCAACACTTGATGTGTTCCTCAAGACGCCACAGGCCCAGGCCTGTGCCGAAGATATTGC
CATATGGATGAAGAAATACATATCCCTGAGAGGGCACGAGTTCTCGTATTAGCTGTAGCAAAAGATCAGCGTTGTGAAAT
AGAGTCTTTACGGGAAGCATCGGTGCATTCTTTTTCACCTGGTGATGGGAGGCACTGCAAGTTAAAAGGTGAGGAACCAG
TTAGGCGTAATATGAGAGTGCTGAGTACCTTTCCCCTTTATTGATGATCCTTGTGGAAGAATGTAGTGTGCAAATTGTAG
ACTGAACTCAAAGACAGATGCTCTTCCGCCTCATAGAGCTCAATTCTTTCATTCCTTTTGTACCCTTTGTGAAGTATTGA
ATTGCCGGGTCTCGAAATCACC-ATTTTTGAGAAAAGAATTATCACCCTAAGC---TGTTGGCATGCCACAACACGTGAA
TAATTTATACCATCCAACATTGTCAACCTTGTTGCTCTACTGCCTTCCTACTTGGTTTGCCTTGAAAT-------ATCAA
TTTGTTTGACTTTGTAGCATAATTATCTGGGT------TCTGTTTAAATGAGAGTTATCTTTGTGTGCATGCTACGGATT
TCCTTGAAAGT---ATCAACTTTGATGTTGCAAGGCTTTAAAGTGAAACCTGTT---AAAAGACATGCTTCATGCTGACA
CTAACATATTCCAGGCTCAAGTTTCTCATCCAAGTATCTGCTAACTTATTGTTCAATCATTGTTCATGTTCCCTTTCACC
TAAAGAAAAC---TGATAGTTAAAAAGCAATACGCCACATAGTTGAAATCCTGAGAGTGGGTTAACATTAATCAAATGAA
GATGTTAAACCATGTTAGAAAATGACGATGCGAAATCAGCATGAACTGTTTCTCTGGAAGAACACTCTCCACAGCAATCA
AACTTC------ATGGGCTAGCTGCAGTTGTCTTCTTAGAATAGTCAGTAATGATCTCAAAGAGGAACTTTTGAGCATCC
TGGAGCCAATATCTGGAATGACGCAAAGGCATTATTAAACAGCTGTCATAAGATATGCAGTCATATATGATACACATACT
CATGCGTATTCTAGAAAAAAAATAGATATGCAGTCAAGTAAAAT
>chr3B_15
--------------TACATATCTTGTTGTTCTCAGCTGATCGATCCTCCGGCGTGCAATCCGGCGTTGACCGTTGCCACG
GGCGGGGATTTTTATACGTGCCTTCCAGAAAGATATCTGTGTCTGTTACAACAGAGTTGCTGAACCTG-ATTGGCATAGA
AAATGGAGAGGCTATGACTACCACCG----ACACAACAGAGGAGGCAAAAAATGAAGGGGGAAGACCTATTGTTTCACAT
AAAGATTTC-CATAAAGAAGTGCTTGTGCTGGGACACACACGCACCAGCTTGGGAGGAGCTTTCACGTGAACCGATGGAA
TCTGGGAGCAG------ACAGGCATCGTACC-TGCACCGTTTAATGCACTCCACGTTATCGGAGTTAAAAAA-A-CCTGC
CGAATAATACCACCATAGCACTCGCTCCACCACTAGGCAGAATGTGAGAACGGAAACTGCAAAGCGCAAACCCAGGCAAG
TCGTGATACAGCTACTACTACTTCTAGTACCACCACCA-----------------------------------------C
CACCAGGCCGGGTTTGAATTTGAACGACGAACGCGCAGCA---------ACAG-------CGCAGGCGCAGGGGGCCGAG
------AGAAGAGGGACCGTGGTCACGTCTGGGAAGCGGCCGACGCCTGCCT----------------CCAAAAATCC-C
CATCGCTTCCTCGTCTTTTCCTTCCTCCCTCCCTCGCTTGCTTCTCCCTCCCTCACCCACCGCCCTCTCGATCCTT----
-CCTCCCCTTGCTTCTCTCTCCCGT---ACCAGACCGCACC-----ACGCT-----GCTGCCATCATCCGTCAGGATAG-
----CCACCCTACCAATCGCGGTTGCTTTCCCTCGCCCCAACCACTCCAACACCGCACGGAGCCGAGCCGATCTAATCCA
ATCCGGCCCCATTAACCCTCCTCCGCGCCCGATTCCAATCGCGCCCCCCGCCAGCTCCGATCGAGGCAGGGGGATTC---
--------------GCAGATCCGGGCGCCGTCTCG-----CTCTCCCTGTGATGCGCGGATCCGGGCGGTGACCGGCGGC
GGGAGCGAGCCAAGCCATGCCGAGCGTCGGCGTGAAGATCTACAGCGTCTTCTTCAAGCTGCTCCTGCGCCACCGCCTCC
AGTCGCTCGCCGCCGC------GGCCGCCGCCGACGGGGGCGGCGGGGACGGCGACGCGGCCGCCTTCGGGGTCTCCTGC
CGCGCCGACGAGGCCACGGCGCCGGCCAACCCGGCCTTCTCCGCCGCCGACGGGGTCGCCTCCAAGGACCTGCACATCGA
CCCCAACTCGGCGCTCTCCGTCCGCATCTTCCTCCCCACGCCGCCGCCGCACCACCCGCACCTCCTCCACCCGCGCCGCG
CCAGCGACCCCGCCGCCGGCCAGGCGGGCGCGCCCTACAGGGGCTACCTCCCGCACGCCGTCTCCTCCCCGCGGGCCGCC
GCCTCCGCGCGCCGCAGGCTGCCCATCGTCGTGCAGTTCCACGGCGGCGGCTTCGTCACGGGGAGCAACTGCTCCGCCTC
CAACGACGCCTTCTGCCGGAGGGTCGCCAAGTTCTGCGACGCCATCGTCGTCGCCGTCGGCTACAGGCTCGCGCCCGAGA
GCCGCTACCCCGCCGCCTTTGATGACGGGGTCAGGGTGCTTAGGTGGATCGCCAAGCAGGCCAATCTCGCCATGATGAGC
AAGGTTGGGGGCGGGGTGGACACGTTCGGTGCCTCCACCGTCGAGCCCTGGATCGCCGCACATGGTGATCCGGCAAGGTA
TAATTTAATTCGG-TTCTA--ATCTCTCG-TTTGTAATTGCATTTCTTGCTGCTT--CGACTTTACTAAATGGCCTAGGA
ACATAATACTGCAGTGTGAAGTTGCCGAAAAGCCGGCAAGCCAAGCAACAGGAATTTTTGTTTCATTTCTTCAATGGAAG
TTCTTGTTTGTCATTCACCAGCATTATTTCAGAAACTGCTAACAAGAATTGCCCTAATTAAGTGAACATGTCAAAACGAC
GAAGATATAGTTCCCTA-TCTATTCGATCTGTTATTGGTTCAAATATGGAGATAGTA-----------A-----------
--------------------------------------------------TTTCCCTGTGAGATGCCATT----------
-----------------------------------------------------ATGACTAGCAGCAGGTTTAGAGAGAGC
TCATGTGTATGTCATTTCCCCGTGGGTTGCCATTTCGGACTAGCAGCAGGTTTAGAGAGAGCTCATGAGTATC-------
-------------------------------------------------------TCATTTCCCCGTGGGTTGCCATTTC
GGACTAGCAGCAGGTTTAGAGAGAGCTCATGAGTATGTCATTTCCCC---------------------------------
--------------------------------------------------------------------------------
-----------GCGAGTTGCCATTTCTGACTAGCAGTGGTTTAGAGACCGTGAGTACGGCATTTCCCCCTGAGTTGCCAT
TTCTGACTTGCAGCAGGTTTAGAGCTCATGAGTATGTTGACCGGGGAAGATTCAATGTTTACAAGCTGACAGTTATACTC
AC-TAA-CATATGGTGTGCACTTTCTGTTATATCTTACCATTTACGTGCACCTTAGCTTTTCGTGTGGACTCTGATCGGG
TACACAGGCTCACAACATAGAAGCATCAAATATCCAAATATTAGTTGATTTAGTTCACCAGGATTACATTCTCCAAATGA
TGTTGACATTCTGAAGATGTCAATGCAACTTTACAGGACTTGCTTGACCGTGGGCATGTGGATAGACCTTTTCTTTGTGA
AATTTTCTAGGGCACATGTTTTCAACAAAGTTCTATATTCCGGTAGGTTGTATATGTTGAGTAAATAACTGCTAATGATG
TCACCACAATCCGATAACCTTGAACACTAGTGAAGGCATGCAATTTTCATATTACTGATTCTGGGATTCTTTATTGGTCA
TGTTTGTTGACCTAACTTATTAATGAAATTCAATTGCACTGAACTGTTGGATCGAATAGATCAGTTAAAACTTACGCTGG
TCTGCTCCCTTACCTATAATGAAGATTTTATTTTAACTATGATTTCAGTAGAACCTGGTGAAATTAGTACCTTTCTCATG
CCTTTTTATTATGTCCGTGTTCTCTTAAATGTGATGTATATATTGATGGACTGTCATCATCTCAAACCTTGGTTGCTTGG
TGTATCACACCTACCTGAGTTTAAACCCCTCAACATAT---GTGCCCACTTCAATTTAATTTGAAATAGAATAGCTGCAT
ATGTGCTAACATCATTAAATGGTTCTTACCTTCTACCTATAAGAGACAAAAGAATATATCTAGTAATTTATTGTAAATCC
TTTTGTTTTAACTGTTGTACATTTGTGTTGCCGGAGTTTGACCAGATCACCCGTCTTTTCCTTGGGAGCAGATGTGTCCT
ACTTGGTGTAAGCTGTGGTGCCAACATTGCTGATTTTGTCACTAGGAAAGCGGTGGAAGATGCAAAGCAATTTGACCCAG
TCAAGGTCGTAGCACAGGTTCTGATGTATCCCTTCTTCATAGGAAGTGTTCCAACACACTCGGAAATAAGGCTTGCGAAC
TCGTACTTCTACGACAAATCCACATGCTTACTTGCCTGGAGATTACTTTTATCAGAGAAAGAGTTCAGCTTGGACCATCC
TGCTGCCAACCCCCTGGCCCCTGGCAGAGGAGGACCCCCACTGAAATGCATGCCCCCAACATTGACGATCGTTGCGGAAC
ACGACTGTATGAGAGACAGAGCAATTGCTTACTCCGAGGAACTCCGCAAGGTAAATGTGGATGCGCCAGTCCTGGACTAC
AAAGATACAGTCCATGAGTTCGCAACACTCGATGTGTTCCTCAAGACACCACAGGCTCAGGCCTGTGCCGAAGATATTGC
CATATGGATGAAGAAATACATATCCCTGAGAGGGCACGAGTTCTCGTATTAGCTGTAGCAAAAGATCAGCATTGTGAAAT
AGAGTCTTTACAGGAAGCATCGGTGCATTCTTTTTCACCTGGTGATGGGAGGCACTGCAAGTTAAAAGGCGAAGAACAAG
TTAGGCGTAATGT--GAGTGCTGAGTACCTTTCCCCTTTATTGATGATCCTTGTGGAAGAATGTAGTGTGCAAATTGTAG
ACTGAACTCAAAGACAGATGCTCTTCCGCCTCGTAGAGCTCAATTCTTTCATTCCTTTTGTACCCTTTGTGAAGTATTGA
AATGCTGGGTCTCGAAATCACC-ATTTTTGAGAAAAGAATTATCAT-CTAAGC---TGTTGGCATACCATAACACGTGAA
TAATTTTTACCATCAAACATTGTCAACCATGTTGCTCTACTGCCTTCCTACCTTTGTTTGCCTCTTGAAATATTAATCAT
TTTGTTTGAAATTATAAGATGAAGTGCAGTGTCATAAGTCTGCTTAAACGAGAGTTATCCTTGAGTGCACATTACGTTTT
TTCCCCTTCAAAGCATCAACTTTGATGTTGCAAGGCTTTAAAGTGAAACCTGTTACTAAAAGACATGCTTCATGCTGCCA
CTAACATATTCCAGGCTCAAGTTTCTCATCTAAGTATCTTGTAACTTATTGTTCAATCATGGTTCATGTTCCTTTTCAAA
TAAAGTAAACTTATGATAGACAAAAAGCAATACTCCACATAATTGAAATCCTGGGAGTAGGTTAGCAATAATCAAATGAA
GGTGTTAAAG--------------------------CAACATTAAACATTCCTCTGAAAGAACACTCTCCGCAGACCACA
GTAATCGAACTTATGGGCTAGCTGCAGTTGTCTTCTTAGTATAGTCAGTCATGATCTC-AAGAGGAACTTTTGAGCCTCC
TGGAGCCAATATCGGGAATGATGCAAAGGCATTTTTGAACAGCCGTCATAAGGTATGCAGTCAAATA-------------
--------------------------------------------
>chr3A_16
---------------ACATATCTGGTTGTTCTCAGCTGATGGATGCGCCGGCGTGCAATCCGGCGTTGACCGTTGC--TG
GACGAGGATTTTTATACGTACCTTCCAGAAAGCCATCTGGGTCTGCTCCAACGGAATTGCACGCCGGATTGCTGGAACGG
TTTCCTGTTCGCAACGGCCCAATTGCTGGAACACAACAGAGGAGGAAAAAAC-GAAGGGGCAAGACCCAATTGCTGGAAC
AATTGTTTGACATAAAGAAGTGCTTGGGCGGGGACACGCACGCACCAGCTTGGGAGGCGCTTTCACGTGAACCGATGGAA
TCTGGGAGTAGTAGTAGACAGGCATCGTACCCTGCACCGTTTAATGCACTCCACGTTATCGGAGTTAAAAAAAACCCTGC
CGAATAATACCACCATAGCACTCGCTCCGCCA---GGCGAAATGTGAGAACTAG--------------------------
----------------ACTAGTACTAGTACCACCACCAGCACCACCTCGCAAGGAGGGGAAGAAAAATCTGCTACTGTAC
CACCAGGCGGGGTTTGAATTTGAACGACCAACGCACAGCACAGCACAGCACAG-------CACAGGCGCAGGGGGGCGAG
GGCGAGAGA-----GACCGTGCTCACGTTCGGGAAGGGGCCGACGCCTGCCTGCCT--------CCATCCAAAAATCC-C
CATCGCTTCCCCGTCTTTTCCTTCCTCCCTCCCTCGCTTGCTTCTCCCTCCCTCACCCACCGCCCTCTCCATCCTTCCTC
CCCTTCCTCCTGTTTCCCGTACCACACCACCACACCACACCGCACCACGCTGCCGCGCTGCCATCATCCGCCCGGATAGG
AGCGCCACCCTACCAATCGCGGTTGCTTTCCCCCGCCCCAACCACTCCAACACCGCGCCGAGCCGAGCCGATCCAATCCA
ATCC---------AACCC-TCTCCGCACCCGATTCCAATCGCGCCTCC-ACCAGCTCCGACCTCCTCCA-----------
---GCGGCGATCGAGCGGATCCGGGCGCCGCCCCGTTTACCTCTCCCTGTGATGCGCGGATCCGGGCGGTGACCGGCGGC
GGGAGCGGGCG-AGCCATGCCGAGCGTGGGCGTGAAGATCTACAGCGTCTTCTTCAAGCTGCTGCTGCGCCACCGCCTGC
AGTCGCTCGCCGCCGC------CGCCGCGGCCGACGGG---------GACGGCGACGCGGGCTCCTTCGGGGTCTCCTGC
CGCGCCGACGAGGCCACGGCGCCGGCCAACCCGGCCTTCTCCGCGGCCGACGGGGTCGCCTCCAAGGACCTCCACATCGA
CCCCAACTCGGCGCTCTCCGTCCGCATCTTCCTGCCCACGCCGCCGCCGCACCACCCGCACCTCCTCCACCCGCGCCGCG
CCAGCGACCCCGCCGCCGGCCAGGCGGGCGCGCCCTACCGGGGCTACCTCCCGCACGCCGTCTCCTCCCCGCGGGCCGCC
GCCTCCGCGCGCCGCCGGCTGCCCATCGTCGTGCAGTTCCACGGCGGCGGCTTCGTCACCGGGAGCAACTGCTCCGCCTC
CAACGACGCCTTCTGCCGCAGGGTCGCCAAGTTCTGCGACGCCATCGTCGTCGCCGTCGGCTACAGGCTCGCGCCCGAGA
GCCGCTACCCCGCCGCCTTTGATGACGGGGTCAGGGTGCTCAGGTGGATCGCCAAGCAGGCCAATCTCGCCATGATGAGC
AAGGTTGGGGGCGGGGTGGACACGTTCGGCGCCTCCACCGTCGAGCCATGGATCGCTGCGCATGGCGATCCGGCAAGGTA
TAATTTAATTCAGGTTCTATGATCTCTCG-TTTGTAATTGCACTATTTGCTACTTTTCTACTTTACTAAATGGCCAAGGA
ACATAATACTGCAGTGTGAAGTTGCCCAAAAGCGGGCAAGTCAAGCGATAGGAATTTTTGTTTCATTTCTTCAATGGAAG
TTCTTGTTTGTGATTCACCAGCATTGTTTCAAAAACTGCAAACGAGAATTGCGCTAGTTAAGTGAACATGTCAAAACGAT
GAAGATATAGTTCACTAGTCTATTCGATCTGTTATTGTTTCAAATATGGAGATGGTA-----------ATTTCCCTGTGA
GATGCCATTCTGGCTAGCAGCAGGTTTAGAGAGAGCTCATGAGTATGTCATTTCCCTGTGAGATGCCATT----------
-----------------------------------------------------CTGACTAGCAGCAGGTTTAGAGAGAGC
TCATGAGTATGCCATTTCCCCGTGGGTTGCCATTTCGGACTAGCAGCAGGTTTAGAGAGAGCTCATGAGTATGTCATTTC
CCTGTCGGTTGCCATTTCGGACTAGCAGCAGGTTTAGAGAGAGCTCACGAGTATGTCATTTCCCCTTGGGTTGCCATTTC
TGACTAGCAGCAGGTTTAGAGAGAGCTCATGAGTATGTCATTTCCCTGTCGGTTGCCATTTTGGACTAGCAGCAGGTTTA
GAGAGAGCTCACGAGTATGTCATTTCCCCTTGGGTTGCCATTTCTGACTAACAGCAGGTTTAGAGAGAGCTCATGAGTAT
GTCATTTCCCTGCGAGTTGCCATTTCTGACTAGCAGTGGTTTGGAGACCATGAGTACGACATTTCCCCTCGAGTTGCAAT
TTCTTACTGGAAGCAGGTTTAGAGCTCATGAGTATGTTGACCGGGGAAGATTCAATGTTTACAAGCTGACAGTTATACTC
AC-TTATCATATGGTGTGCACTTTCTGTTATATCTTACCATTTGCATGTACCTTAGCTTTTTGTGTGGACTCTGATTGGG
TACACAGGCTCACAACATAGAAGCATCAAATATCCAAATATTAGTTGATTTAGTTCACCAGGATTACATGCTCCTAATGA
TGTTGACATTTTGAAGATGTCAATGCAACTTTACAAGATTTGCTTGACCGTTGGCATGTGGAAAGACCTTTTCTTTGTGA
AATTTTCTAGGGCACATGTTTTCAACAAAGCTCTATATTTCGGTAGGTACTATATGTTGAGTAAATAACTGCTAATGATG
TCACCACAGTCCAATGACCTTGAACACTAGTGAAGGCATGCAATTTTCATATTACTGATTCTGGGATTCTTTATTGGTCA
CGTTTGTTTACCTAACTTATTAATGAAATTCAATTGCACTGAACTGTTGGATTGAATAGATCAGTTAAAACTTATGCTGG
TCTGCTCCATTACCTATAATGAAGATTTTATTTTAACTACGATTTCAGTAGAACCTGGTGAAATTAGTACCTTTCTCATG
CCTTTTTATTATGTCCGTGATCTCTTAAATGTGATGTATATATTGATGGACTGTCATCATCTCAAACCTTGGTTGCTTGG
TGTATCACACCTACCTGAGTTTAGACCCCTCAACAGATTAAGTGCCCACTTCAATTTAATTTGAAATAGAATAGCTGCAT
ACGTGCTAACATCATTAAATGGTTCTTGCCTTCTACCTATAAGAGACAAAAGAATATATCTAGTAATTTATTGTAAATCC
TTTTGTTTTAACTGTTGTACATTTGTGTTGCTGGAGTTTGACCAGATCATCCGTCTTTTCCTTGG-AGCAGATGTGTCCT
ACTTGGTGTAAGCTGTGGTGCCAACATTGCTGATTTTGTCACTAGGAAAGCGGTGGAAGATGCAAAGCAATTTGACCCAG
TCAAGGTCGTAGCACAGGTTCTGATGTATCCCTTCTTCACAGGAAGTGTTCCAACACACTCGGAAATAAGGCTTGCGAAC
TCATACTTCTACGACAAATCCACATGCTTACTTGCCTGGAGACTACTTTTATCAGAGAAAGAGTTCAGCTTGGACCATCC
TGCTGCCAACCCCCTGGCCCCTGGCAGAGGAGGCCCCCCATTGAAATGCATGCCCCCAACCTTGACAATCGTTGCGGAAC
ACGACTGTATGAGAGACAGAGCAATTGCTTACTCCGAGGAACTCCGCAAGGTAAATGTGGACGCGCCAGTCCTCGACTAC
AAAGATACCGTCCATGAGTTTGCAACACTCGATGTGTTCCTTAAGACACCACAGGCCCAGGCCTGTGCCGAAGATATTGC
CATATGGATGAAGAAATACATATCCCTGAGAGGGCACGAGTTCTCGTATTAGCTGTAGCAAAAGGTCAGCGTTGTGAAAT
AGAGTCTTTACGGGAAGCATCGGTGCATTCTTTTTCACCTGGTGATGGGAGGCACTGCAAGTTAAAAGGCGAGGAACCAG
TTAGGCGTAATGT--GAGTGCTGAGTACCTTTCCCCTTTATTGATGATCCTTGTGGAAGAATGTAGTGTGCAAATTGTAG
ACTGAACTCAAAGACAGATGCTCTTCCGCCTCATAGAGCTCAATTCTTTCATTCCTTTTGTACCCTTTGTGAAGTATTGA
ATTGCCGGGTCTCGAAATCACCAATTTTTGAGAAAAGAATTATCACCCAAAGCTGTTGGTGGCATGCCATAACACGTGAA
TAATTTATACCATCCAACATTGTCAACCTTGTTGCTCTAGTGCCTTCCTACTTGGTTTGCCTTGAAATGTCACTGTGT--
----TTTGACTTTATAACATAATTATCTGAGTT-----TCTGATTAAATGAGAGTTATCTTTGTGTGCTTGCTACGCATT
TCCTTAAAAGT---ATCGACTTTGATGTTGCAAGGCTTTAAAGTGAAACCTGTAG---AAAGACATGCTTCATGCTGACA
CTAACATATTCCAGGCTTAAGTTTCTCATCCAAGTATCTGCTAACTTATTGTTGAATCATTGTCCATGTTCCTTTTCACC
TAAAGAAAACTGG---TAGTTAAAAAGCAATACGCCACATAGTTGAAATCCTGAGAGTGGGTTAACAATAATCAAATGAA
GATGTTTAATCATGTGAAAAAAGGACGATGCGAAATCAGCATGAACTGTTTATCTGAAAAAACAGTCTCCACAGCAATCA
AACTTC------ATGGGCTAGTTGCAGTTGTCTTCTTAGA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>SNPs
SSSSSSSSSSSSSS------------------------------------------------------------------
-----------S--------------S------------SS---------S-S--------S-SS---S---S-------
--------------------S--------------------S----S----S----------------------------
---S-----S---------------SS--------------S-----------------------------S--------
-----------S---------------------------------------------S-S----S---------------
-----S----SSS-SSSS-S--------------------------------------------S--S-----SS-S---
---------------------------------------------------------------------SS---------
-----------------------------------------------------SSSSSSS--------------------
--------------------------------------------------------SSSSSSSS--------------S-
--------------------------S----S--S--------------------------S----------S-------
-----------------------------------------------------S---------------S---S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--SSSSS-SSS
SSS---------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
----------------SSSSSS---------------S--------------------------------S---------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S--S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
------------S-----S-S-------SS--------------------------------------------------
------------------------S-------S--------------------------S--------------------
------------------------------------S-----S---------------S---------------------
------------------------S------SSSSSSSSSSSSS-SS-SSSSS-S-SSSSSSSSSSSS------------
--------------------------------------------------------S---S-S-------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
------------------------S---------SS-----------------------------S--------------
--------------------------------------------------------------------------------
------S----------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
----------------------------S------------S--------------------S-----------------
--S----------------------------------------------------------------S------------
----------------------------------------------------S--SS-----------------------
-----------------------------------------------------------------S---------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S----------S-------------S----------------S---------------------------S----
------S--------------------------------------------------S----------------S--S--
--------------------------------------S-----------------------------------------
--------------------------------------------------------------S-----------------
--S--S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S--------------S-----------------S-------------------------
-------------S------------------------------------------------------------------
-----------------------------S-----------------S--------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------S-SS-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------------------------------------------S
-------------S--S------------S------------S---------------------------------S---
-----S--------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------------------------------------------------------S------------
---------S-----S-S----S---------------------------------S-----------------------
-------------------------------------------------S--------S-----------------S---
-------------S-------S-----------S--S------S--------S----------S---SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_793
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CACCCACCTCCCTCTCCATT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_1953
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--------------------------------------------------------------------------------
--------------------------------TGGGCAAGTCAAGCGATAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_874
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CGCTGCCATCATCCATCCA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2217
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CGTGGGTTGCCATTTCTGAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_2236
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CGTGGGTTGCCATTTCTGAC----
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_3957
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------GCCACTGAAATGCATGCCTC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_3026
--------------------------------------------------------------------------------
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----------------------------------------------ACCGTTGGCATGTGGATAGG--------------
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>reverse_4983
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------TGACGATGCGAAATCAGCATG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
