>input_sequence_27340
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-----------------------------------------------------ATGGTTAAATATTGATTATAACTCAAC
AGTGGTTGTCGATTACTAACAAGTAACAACACATGGATGTTTAGTTATGTACCTTGAGCTATGTTGCAATCTGCAAGCGA
TTTCCTACTGTCCCACTCTCCCTTCGAGCATCTCATCAGCAGATGCTTATTTA-TTAATCATCTTTTGGATTATTTGACC
AGCTGATAGTTCAATTCCACTTTGATGCATGAATGTAGA------AAA-AATAGGTAAAGATGGGTATGCAACACGGTAA
AGCTACAATTGTTCGTACTTACTTTTATCCAATTTCTGCAGGCCACACCACTCATAGCTGGACTTGCTGTGGCAGCCACT
GCTCTTGCGGGTAGATATGGCATCCAGGCTTGGCAAGCTTACAAGGCAAGGCCCATAGTTCCAAGGATGCGTAAATTCTA
TGAAGGTGGCTTTCAAGCTACAATGACCCGACGGGAAGCTGGTCTAATCTTGGGTATCAGGTCTGTGTTGCATAAAAGCA
TAACACCCAT----------------------------------------------------------------------
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---------------------------------------------------------------------ACCATAGTCAA
GTATTCTTATATG-----TAGCATATATGTATTCATATGTAG-------GACTCTAGTTCAATCTCATGCCATTGAAATT
ATGTTTACTTCTGTACAGAACAGGAATAGCACGGAAAGATATAATTTATGCAGCACAGCACATGTAGGAAACTTACTTTG
ACCCCTTCCCCCGCCCATCAGACTCGTGGGAAGAATTTGTTTTTACCGGTACCATTCTCAAATGGACACTAGAAATCCCC
TAAAAGTGATGTAAAAGGATAACAGCCATCATTAGCTTCCTTTATGTATGCTGCAACTGTTATGCTTTCTGAGAAGTCTA
CTGAGATAGCTAATTGTAATATTTTG----TAGTTGTCCTAGCTTCATTTCGTTCCCTGCAGTACGTAGAAGATACTTGG
AACCTTGCAGAAAGTCATGTGGCGATACTGTACAATTTCATACTAAAAACAGATTCACTTTTAGTCCAAACTCCATTCTG
ACATTAACACACTAGCATACACATGTACAGATTGATAGCTATACTTAACAAAGTAATTATACCATAAGCTGTAAATGTGG
TTTTAAGCTGCTTCATTAATTTACAGCTGAACATCTTGCAATTAAGGCAAAGGGAACTCTCTCACTTCCAACTACAGAAT
ACTTTACAAATGCCATTTAAGATGAAAAGCAATAGCTAGCTTTCAGTGGTTTTAAATTGTGGTGTAAGATTTGACCATTT
AGTGTCATAATGGAGTGGAGAA-CCTAGTCAACCTTTGTCGACCACTGCTTGCATCTCAGCCACTCAAGTCACGAACTAT
AGAACTGGCTTGCCGTCTGACAAAGTCTAAACTTTAACCAAGCTGAGCTCCTGTGTTCCCCTTCACCCTTCTGCGGATTG
GTGTTAATAAGGAGACAGATGTTGGGTTGTAAAGGCTCAAGCCATCATAGTGGCTAAAGTGGAACAAGATTTAAGAGTGA
GATTAAGTAGGCCACAGGCCCACAGCTGAAGTGATATTTGGGCTTGGCGTGAGAATATA---GGGCTCAAGTTTGTTGCG
AACAGTCTGTTGGATCAATTTATCACGCCACAACCCCACTAGATTTGATTTGGATTAAAATGCTTGGTTCCTGACCGAAT
TCACATGGATCTTAGTTCTGAAATCTGAACCTATCCAAAGGAGCCTTTTGAGTAATTACCTGTGTATAAAAGGATAGAAT
TGCCATCTCAAACTAGGTGCAATCTTGTATATATATTTCTAGTTTGGCCTGGAGGTCAGTTGAATGCATCAGTAAATAAT
TCCCTG-CAAATTGATCTCCTGCTTGCAATGATATGTCTCGACTTTTCTCTACATATAAAAAAGAAAAGACAGACCCATT
GCTAGAAGCTCCCACACCAGATAGGGCCTGGGGAAGGATTA-----GGCTGCGTCGAACCCAGGACCATACTCCTGCAAA
GTTCAATGCAGAGAGGCTGCGTCGAACTCAGGACCTCTTGGCACAAGTGGGGAGTACTTCTTCACCACTGCCTCAGGCCT
GTCCTTCTGAATTTTCTGCACATCGCCAGAAAGATATTTACTCAGTTGATTAAAAACAAACTGTTGAGCTCATGAAGGAG
GAGTTATCAATTATTGACCTGCTATCTTTTTTCGTTCATAGTGCCCCCTGTACTTACTAGTAAATGTGTACGTGCAATGC
ACGTTGATATTTGGTAATATATTAATTACACGTAAACATTAGGTAGGATATTATTTGCATATTAAGTATGTGATTAGCAT
TGGCATTAATATTTGGTATGATATTAACTGCACACTAAACGTGTTGAGCGCTCACCATTGGAGCAGCCTGAGTCGTTGGA
TTGACCTGATTTGACGGCCGGGATTCGTTGGATCTGCCCCTTTGGGTCTTTTTATTGGTATATATATATATATATATATA
TATATATATATATATATATATATATATATAGATAGATAGATATAGATATAGATGTGACCAACATGTAGAATTAGGTCTTC
ATCTTTTTCCTTCTAAATTTATATGCATCTTGGCATGCCAGACTGGTCATTCTGACATTTGAATAAGTGCCAGTTACTTG
TGATTCAACAATTTTATTTGTGATTTATGATTTGAGACGTGTTTTGTGTGTCTTATCATCATTGTTAAGTTGCCATGTTT
CCTTTTGATTCCTCCAGGGAAAACGTCCGTCCTGATAAGGTGAAAGAGGCACACAAGAGGGTCATGGTTGCCAATCACCC
GGATGCAGGAGGAAGCCATTACCTTGCGTCGAAGATCAACGAGGCAAAAGATGTTTTGCTGGGGAAAACTAAAGGAGGTG
GTTCAGCCTTTTGA------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G152700
ATTGTACTATCATGATTGAAAATTAATAGATTGAAAGTTTTCTCGAAAAAAATAAAAATAAGAGCGATGATGGAGTAGTT
TTTAAAAAGTGGAAACAAATCATCCAAGACAGAATTTCTTTTTGAGGGAACCCAAG--AGAATTTCAACTCAACCTGAGT
ACGCTTTCGGAACTGGAACACGATATCCGAAAGGTGCATATCCCATTTTCAGTGGCAACTGACAAGTGGGTCCCATGTAC
CTGCTTCCCTCTTCGGCTCAGTTCGTGGGCGCTCCCAAAGGCCCAGCCCAAGTAGGGTTCCGTCTTCCACGATCCACCCA
TCCCTCCCTCCGCCGCGAAGCTTCCAGTACCCTCCACGCGACGCGACTCCGCCGACGCCGTTCTCATCTCCGGCGATCTC
TCGGGCCCTAGCGCCGCCCGCGTCCGCACCTGCGTGCAGCCACTCATCGGCCGCGTCTTCTGCGCCCTCCCGCCTTGAAC
AACTCGCCGGAGTTACTGGTCGTGGAGATGGTGAGCTCTATTCAAACACGAGAGATCATGCTTCTTCTTGTTAATAGT--
TTTTTATCGCTGCACGCTTGTTCGTTTTAGATTGAATCGATTCTATCGAAGCAACGTGTAATTTAATCTGGAGGTTGCAG
CCAAATTATGTGACATTTCAGAGCGTAGTGATGCCAATGTGCGGCTAGGGGGATCA-GATGTTGCTTAAATATTGGCCTT
AGGGAGGAGCATGGTTGTTCTG------TTAAAGCTGGGGGCGATTTAGACAGATTCTTCTGGTTTTCGCGACATTTTGT
GTCCCAACTTTATATCCTTCTGGTAGCTACTG-CCTTTGGAAGTGGCTTTTAGTAGCTGGCCGAGAATCAGACCAGATTA
GTGTAAATCACAATTTCCAGTTCACATGTTTTTTCACCTGCTCAATG-TTTATCATTCTGAATTTCAGATGTATTTTGGG
ATGAAATGATGTTTCAGACTTTACCCCACTGGATAGTCCTAGATCTATTTTTGATGGTTAAATATTGATTATAACTCAAC
AGTGGTTGTCGATTACTAACAAGTAACAACACATGGATGTTTAGTTATGTACCTTGAGCTATGTTGCAATCTGCAAGCGA
TTTCCTACTGTCCCACTCTCCCTTCGAGCATCTCATCAGCAGATGCTTATTTA-TTAATCATCTTTTGGATTATTTGACC
AGCTGATAGTTCAATTCCACTTTGATGCATGAATGTAGA------AAA-AATAGGTAAAGATGGGTATGCAACACGGTAA
AGCTACAATTGTTCGTACTTACTTTTATCCAATTTCTGCAGGCCACACCACTCATAGCTGGACTTGCTGTGGCAGCCACT
GCTCTTGCGGGTAGATATGGCATCCAGGCTTGGCAAGCTTACAAGGCAAGGCCCATAGTTCCAAGGATGCGTAAATTCTA
TGAAGGTGGCTTTCAAGCTACAATGACCCGACGGGAAGCTGGTCTAATCTTGGGTATCAGGTCTGTGTTGCATAAAAGCA
TAACACCCAT----------------------------------------------------------------------
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---------------------------------------------------------------------ACCATAGTCAA
GTATTCTTATATG-----TAGCATATATGTATTCATATGTAG-------GACTCTAGTTCAATCTCATGCCATTGAAATT
ATGTTTACTTCTGTACAGAACAGGAATAGCACGGAAAGATATAATTTATGCAGCACAGCACATGTAGGAAACTTACTTTG
ACCCCTTCCCCCGCCCATCAGACTCGTGGGAAGAATTTGTTTTTACCGGTACCATTCTCAAATGGACACTAGAAATCCCC
TAAAAGTGATGTAAAAGGATAACAGCCATCATTAGCTTCCTTTATGTATGCTGCAACTGTTATGCTTTCTGAGAAGTCTA
CTGAGATAGCTAATTGTAATATTTTG----TAGTTGTCCTAGCTTCATTTCGTTCCCTGCAGTACGTAGAAGATACTTGG
AACCTTGCAGAAAGTCATGTGGCGATACTGTACAATTTCATACTAAAAACAGATTCACTTTTAGTCCAAACTCCATTCTG
ACATTAACACACTAGCATACACATGTACAGATTGATAGCTATACTTAACAAAGTAATTATACCATAAGCTGTAAATGTGG
TTTTAAGCTGCTTCATTAATTTACAGCTGAACATCTTGCAATTAAGGCAAAGGGAACTCTCTCACTTCCAACTACAGAAT
ACTTTACAAATGCCATTTAAGATGAAAAGCAATAGCTAGCTTTCAGTGGTTTTAAATTGTGGTGTAAGATTTGACCATTT
AGTGTCATAATGGAGTGGAGAA-CCTAGTCAACCTTTGTCGACCACTGCTTGCATCTCAGCCACTCAAGTCACGAACTAT
AGAACTGGCTTGCCGTCTGACAAAGTCTAAACTTTAACCAAGCTGAGCTCCTGTGTTCCCCTTCACCCTTCTGCGGATTG
GTGTTAATAAGGAGACAGATGTTGGGTTGTAAAGGCTCAAGCCATCATAGTGGCTAAAGTGGAACAAGATTTAAGAGTGA
GATTAAGTAGGCCACAGGCCCACAGCTGAAGTGATATTTGGGCTTGGCGTGAGAATATA---GGGCTCAAGTTTGTTGCG
AACAGTCTGTTGGATCAATTTATCACGCCACAACCCCACTAGATTTGATTTGGATTAAAATGCTTGGTTCCTGACCGAAT
TCACATGGATCTTAGTTCTGAAATCTGAACCTATCCAAAGGAGCCTTTTGAGTAATTACCTGTGTATAAAAGGATAGAAT
TGCCATCTCAAACTAGGTGCAATCTTGTATATATATTTCTAGTTTGGCCTGGAGGTCAGTTGAATGCATCAGTAAATAAT
TCCCTG-CAAATTGATCTCCTGCTTGCAATGATATGTCTCGACTTTTCTCTACATATAAAAAAGAAAAGACAGACCCATT
GCTAGAAGCTCCCACACCAGATAGGGCCTGGGGAAGGATTA-----GGCTGCGTCGAACCCAGGACCATACTCCTGCAAA
GTTCAATGCAGAGAGGCTGCGTCGAACTCAGGACCTCTTGGCACAAGTGGGGAGTACTTCTTCACCACTGCCTCAGGCCT
GTCCTTCTGAATTTTCTGCACATCGCCAGAAAGATATTTACTCAGTTGATTAAAAACAAACTGTTGAGCTCATGAAGGAG
GAGTTATCAATTATTGACCTGCTATCTTTTTTCGTTCATAGTGCCCCCTGTACTTACTAGTAAATGTGTACGTGCAATGC
ACGTTGATATTTGGTAATATATTAATTACACGTAAACATTAGGTAGGATATTATTTGCATATTAAGTATGTGATTAGCAT
TGGCATTAATATTTGGTATGATATTAACTGCACACTAAACGTGTTGAGCGCTCACCATTGGAGCAGCCTGAGTCGTTGGA
TTGACCTGATTTGACGGCCGGGATTCGTTGGATCTGCCCCTTTGGGTCTTTTTATTGGTATATATATATATATATATATA
TATATATATATATATATATATATATATATAGATAGATAGATATAGATATAGATGTGACCAACATGTAGAATTAGGTCTTC
ATCTTTTTCCTTCTAAATTTATATGCATCTTGGCATGCCAGACTGGTCATTCTGACATTTGAATAAGTGCCAGTTACTTG
TGATTCAACAATTTTATTTGTGATTTATGATTTGAGACGTGTTTTGTGTGTCTTATCATCATTGTTAAGTTGCCATGTTT
CCTTTTGATTCCTCCAGGGAAAACGTCCGTCCTGATAAGGTGAAAGAGGCACACAAGAGGGTCATGGTTGCCAATCACCC
GGATGCAGGAGGAAGCCATTACCTTGCGTCGAAGATCAACGAGGCAAAAGATGTTTTGCTGGGGAAAACTAAAGGAGGTG
GTTCAGCCTTTTGATCATATATCATGCAAAATGTGCTCACCCAATGAAGATACTATTATTTTTGCACCTCCAGACTCTGC
ACCTAGAACTAGAAGGCAGACAAAAGCCTTGGTGTATCACTGAAATTTCTGGAGAAAGAACATTAGATGTCTTAGACGTA
GCAGGTTCTTTGACTGTTTGACACTTCCAAGACCAAAGTTGTGCT-GGTTAAGGAATAAATGATGTACTACATGAGGTTG
GCCTGTGTTGAGTTTTGCATAACATTTGTTCATCTATCTACTCTATCGATATAGCTGTACTGCAATATGGTTCTTCTCTA
GCTCGCAATATCAAGTCATATAGTCCTCTTCGTCTTCCTCCAATAGACTTTGCTCCCGCGGAGTCTCCTGTTCTTTAACT
TCTGGAGTGTACTTTGGCATGTCAAGGTGCCACATCATTATCCGTGACTTGGAGCAGTCAGAAGGGATGCCCTTCCGCAT
GTCCTCGTCGCCGACCGCCATTCGTCGTACAAGCTGGATGTAGTCCTGAGAGCCGCCTCCTGAAGAGCT-----------
----GTTGCTGTCGGCGAACCATTCTGATTCCCACAGTATGGAGCTCCTGAACCCAAGTCCAGATATGCCTATTTCAGGA
GGTAAACTGGAGCTGTTGCGGATGGCGCCTGTATCTTGTGCAGCAACCGCATCTGCTGTATGTGTTGCTGTTGCATTGGT
GCTCGAGTCCTTGGAGTACCAGCCTGTTATCTGTGATGAGTTGCAGGTTGGTCCTTGTAGTGTTACTGTCTGGTCTGCTG
ATGACACAGTTGCGGTTGGCCATGCTGCAACGCCCCTGGATCAAGGATTGCATGAGTGTTGTTATTATGTTGCTCCTGTG
TTGGTACTTTT-TTGGC--AAAGGCAAAGAAAGATGTTGCAAAGCTGCAAGAGAAGGAAGAAGCACGACGCACCGAGTCT
GCCTGAGCTCTTCAAAGAACTCGAGGTCGTATATGGCAGAGGCGGCAGCGAAGTGGACGACCCCGGCCAGCCG
>chr3A_76
TAGTTT--------------------------------------------------------------------------
TTTAAAAAGTGGAAAAAATCAT--CAAGACAAAAATTCTTTTTGAGGGAATCCAAGACAGAATTTCAACTCTACCTGAGT
ACGCTTTCGGAACTGGAAGACGGAAGCCGAAATGGTCCATATTCCGTTTCAGTGGCAACTGACAAGTGGGTCCCACGTAC
CTGCTTCCCTCTTCGGTTCAGTTC--------------AGGCCCAGCCCAAGTAGGGTTCCGTCTTCCACGATCCACCCA
TCCCTCCCTCCGCCGCGAAGCTTCCAGTACCCCCCACGCGACGCGACTCCGCCGACGCCGGTCTCCTCTCCGGCGATCGC
TGTAGCCCTAGCGCCGTCCACGTACGCACCTACGTGTAGCCACTCACCGGCCGCCTCTTCTGTGCCCTCCCGCCTGCAAC
AACTCGCCGGAGTTACCGGTCGTGGAGATGGTGAGCTCTATTCAA-CACGCGAGATGGCGCTTTTTTTTGTTAATAGG--
ATTTTATCGCTGCGCGCTTGTTTGTGTTAGATTGAATTGATTCTATCGAAGCAACGTGTAATTTAATCTGGAGGTTGCAG
CCAAATTATGTGACATTTCAGAGCGTAGTGATGCCAATGTGCGGCTAGGGGGATGAGGATGTTGCTTAAATGTTGGCCTT
AGGGAGGAGCATGGTTGTTCAG------TTAAATACGGGAGCGATTTAGACAAATTCTTCTGGTTTTCACGAGATTTTGT
GTCCCGACTTTATATCCTTCTGGTAGCTGATGTCCTTTGGAAGTGGCTTTTAGTAGCTGGCCGAGAATGAGACCATATTA
GTGTAAATCACAATTTCCAGTTCACAAGTTTTTTCACCTGCTTAGCGTTTTATCATACTGAATTTCAGATGTATTTTGGG
ATGAAATGATGTTTCAGACTTTACCCCACTGGATAGTCCTAGATCTATTTTTGGTGGTTAAATATTGATTATAACTCAAC
AGTGGTTGTCGATTACTAACAAGTAACAACACATGTATGTTTAGTTATGTACCTTGAGCTATGTTGCAATCTACAAGCGA
TTTCCTACTGTCCCACTCTCCCTTCGAGCATCTCATCAGTAGACGCTTATTTATTTAATCATCTTTTGGATTATTTGACC
AGCTGATAGTTCAATTCCACTTTGATGCATGAATGTAGGGTGTCCAAA-AATAGGTAAAGATGGATATGCAACACGGTAA
AGCTACAATTGTTTGTACTTACTTTTATCCAATTTCTGCAGGCCACACCGCTCATAGCTGGACTTGCTGTGGCAGCCACT
GCTCTTGCGGGTAGATATGGCATCCAGGCTTGGCAAGCTTACAAGGCAAGGCCCATAGTTCCAAGGATGCGTAAATTCTA
TGAAGGTGGCTTTCAAGCTACAATGACCAAACGGGAAGCTGGTCTAATCTTGGGTATCAGGTCTGTGTTGCATAAAAGCA
TAACACCCAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------ACCATAGTCAA
GTGTTGTTATATCATTATTAGCATACAGGTATTCATATGTAGGCTGTAGCACTCTAGTTCAATCTCATGCCATTGAAATT
ACGTTTACTTCTGTACAGAACAGGAATAGCACGGAAAGATATAATTTATGCAGCACAGTACACGCAGGGAACTTACTTTG
ACCCCTTCCCCCGCCCATCAGACTTGTGGGAAGAATTTGTTTTTACCGGTACCATTCTCAAATGGACACTAGAAGTCCCC
TAAAAGTGATGTAAAAGGATAACAGCCATCATTAGCTTCCTTTACGTATGCTGCAGCTGTTATGCTTTCTGAGAAGTCTG
CTGAGATAGCTAATTGTAATATTTTTTAGTTAGTTGTCCTAGCTTCATTTCGTTCCCTGCAGTACGTAGAAGATACTTGG
AACCTTGCAGAAAGTCATGTGGCGATACTGTACAATTTCATACTAAAAATAGATTCACTTTTAGTCCATACTCTATTCTG
ACATTAACACACTAGCATACACATGTACAGATTGATAGCTATACTTAACAAAGTAATTATACCATAAGCTGTAAATGTTG
TTTTAAGCTGCTCCATTAATTTACAGCTGAACATCTTGCAATTAAGGCAAAGGGAACTCTCTCACTTCCAACTACAGAAT
ACTTTACAAATGCCATTTAAAATCAAAAGCAATAGCTAGCTTTCAGTGGTTTTAAATTGTGGTGTAAGATTTGACCATTT
AGTGTCATAATGGAGTGGAGAA-C-TAGTCAACCTTTGTCGACCACTGCTTGCAGCTCAGCCACTCAAGTCACGAACTAT
AGAACTGGCTTGCCGTCTGACAAAGTCTAAACTTTAACCGAGCTGAGCTCCTGTGTTCCCCTTCACCCTTCTGCAGATCG
GTGTTAATTAGGAGACAGATGTTGCGTTGTAAAGGCTCAGGCCATCATAGTGGCTAAAGTGGAACAAGATTTAAGAGTGA
GATTAAGTAGGCCACATGCCCATAGCTGAAGTGATATTTGGGCTTGGGGTGAGAATATATTTGGGCTTAAGTTTGTTTCG
AACAGTCTGTTGGATCAATTTATCACCCCACAACCCCATTAGATTTGATTTGGATTAAAATGCTTGGTTCCTCACCGAAT
TCACATGGATCTTAGTTCTGAAATCTGAACCTATCCAAAGGAGCCTTTTGAGTAGTTACCTGTGTATAAAAGGATAGAAT
TGCCATCTCAAACTAGGTGCATTGTTGTATATATATTTCTAGTTTGGCCTGGAGGTCAGTTGAATGCATCAGCAAATAAT
TTCCTGACAAATTGACCACCTGCTTGCAATGATATGTCTCGACTTTTCTCTACATATAAAAAAGAAAAGACAGACCCATT
GCTAGAAGCTCCCACACCAGGTAGGGTCTGGGGAAGGATTATACGAGGCTGCGTCGAACCCAGGACCATACTCCTGCAAA
GTTCAATACACAGAGGCTGCGTCGAACCCAGGACCTCTTGGCACAAGTGGGGAGTA---CTTCACCACTGCCTCAGGCCT
GTCCTTCTGAATTTTCTGCACATCGCCAGAAAAACC------CAGTTGATTAAAAACAAACTGTTGAGCTCATGAAGGAG
GAGTTATCAATTATTGACCTGCTATCTTTTTTTGTTCATAGTGCCCCCTGTACTTATA----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------TGACCAACATGTGGAATTAGGTCTTC
ATCTTTTTCCTTCT-AATTTATATGCATCTTGGCATGCCAGACTGGTCATTCTGACATTTTAATAAGTGCCAGTTACTTG
TGACTCAACAATTTTGTTTGCGATTTATGATTTGAGATGTGTTTTGTGTGTCTTATCATCATTGTTAAGTTGCCATGTTT
CCTTTTGATTCCTCCAGGGAAAATGTCCGTCCTGATAAGGTGAAAGAGGCACACAAGAGGGTCATGGTTGCCAATCACCC
AGATGCAGGAGGAAGCCATTACCTTGCGTCGAAGATCAACGAGGCAAAAGATGTTTTGCTGGGGAAAACTAAAGGAGGTG
GTTCAGCCTTTTGATCATATATCATGCAAAATGTGCTCACCCAATGAAGATACTATTATTTTTGCACCTCCAGTCTCTGC
ACCTAGAACTAGAAGGCAGACAAAAGCCTTGGTGTATCACTGAAATTTCTGGAGAAAGAACATTAGATGTCTTAGACGTA
GCAGGTTCTTTGACTGTTTGACACTTCCAAGACCAAAGTTGTGCT-GGTTAAGGAATAAATGATGTACTACATGAGGTTG
GCCTGTGTTGAGTTTTGCATAACATTTGTTCATCTATCTACTCTATCTATATAGCTGTACTGCAATATGGTTCTTCTCTA
GCTCGCAATATCAAGTCATATAGTCCTCTTCGTCTTCCTCCAATGGACTTTGCTCCTGTGGAGTCTCCTGTTCTTCAACT
TCTGGAGTGTGCTTTGGCATGTCAAGGTGCCACAGCATTATCCGTGACTCGGAGCAGTTAGAAGGGATGCCCTTCCGCTC
GTCCCCGTCGCCGACCGCCATTTCTCGTACAAGCTGGATGAAGTCCTGAG---------------AGCT-----------
----GTTGCTGTTGACGAACCATTCTGATTCCCACAGTATTGAGCTCCTGAACCCAAGTCCAGATGTCTCTATTGCAGGA
GGTGAACTGGAGATGTTGTGGATTGCACCTGTATCTTGTGCAGCAGCAACAGACTCTCTATGTGTCT------CATTGGT
GCCCGAGTCCTTGGAGTACCAGCCTGTTATCTGTGATGAGTTGCAGGTTGGTCCTTGCACTGTTACTCTCTGCTCTGCTG
ATGACACAGTTGCCGTTGGCCATGCTGCAACGCCCCTGGATCAGGGATTGCACAAGTGATGTTATTATGTTGCTCTTGTG
TTGGTAAAAAAATTGGC--AAAGGGAAAAAAAGATGTTGCAAAGCTGCAAGAGAAGGAAGAAGCAGGACGCACCGAGTCT
GCCTGAGCTCTTCAAAGAACTCGAGGTCGTATATGGCAGAGGCGGCGGCGAAGTGGACAACCCCGGCCAGCCG
>chr3D_141
TTTCCA--------------------------------------------------------------------------
-------------------------------------------------------------------ACTCTACCAGAGT
ACGCTTTCGGACCTGGAAGACGGCACCCGAAATGGTCCATATTCCGTTTCAGTGGCAACTGACAAGTGGGTCCCATGTAC
CTGCTTCCCTCTTCGGCTCAGTTCGTGGGCGCTCCCAAAGGCCCAGCCCAAGTAGGGTTCCGTCTTCCACGATCCACCCA
TCCCTCCCTCCGCCGCGAAGCTTCCAGTACCCTCCACGCGACGCGACGCCGCCGACGCCGTTCTCCTCTCCGG-------
-----CCCTAACGCCGTCCACGTACGCACCTGCGTGTAGCCACTCACCGGCCGCGTCTTCTGCGCCCTTCCGCCTTGAAC
AACTCGCCGGAGTTACTGGTCGTGGAGATGGTGAGCTCTATTCAAACACGCGAGATCACGCTTCTTTTTATTAATAGTAG
TTTTTATCGCTGCGTGCTTGTTACCGTTAGATTGAATCGATTCTATCGAAGCAAGGTGTAATTTAATCTGGAGGTTGCAT
CCAAATTTTGTGACATTTCTGAGCGTAGTGATGTCAATGTGCGGCTAGGGGGATCA-AATGTTGCTTAAATGCTGGCCTT
AGGGAGGAGCATGGTTGTTCAGTTAAACTTAAATATGGGAGCGATTTAGAAAAATTCTTCTGGTTTTCACGACATTTTGT
GTCCCAACGTTATATCCTTCTGGTAGCTGATG-------GAAGTGGCTTTTAGTAGCTGGCCGAGAATGAGACCAGATTA
GTGTAAATCACAATTTCCAGTTCACATGTTTTTTCACCTGCTCAATG-TTTATCGTTCTGAATTTCAGATGTATTTTGGG
AAGAAATGATGTTTCAGACTTTACCCCACTGGATAGTCCTAGATCTATTTTTGATGGTTAAATATTGATTATAACTCAAC
AGTGGTTGTCGATTACTAACAAGTAACAACACATGGATGTTTAGTTATGTACCTTGAGCTATGTTGCAATCTGCAAGCGA
ATTCCTACTGTCCCTCTCTCCCTACGTGCATCTCATCAGTAGACGCTTATTTATTTAATCATCTTTTGGATTATTTGACC
AGCTGATAGTTCAATTCCACTTTGATGGATGAATGTAGAGTGTCCAAAAAATAGGTAAATATGGATATGCAACATGGTAA
AGCTACAATTGTTTGTACTTACTTTTATCCAATTTCTGCAGGCCACACCACTCATAGCTGGACTTGCTGTGGCAGCCACT
GCTCTTGCGGGTAGATATGGCATCCAGGCTTGGCAAGCTTACAAGGCAAGGCCCATAGTTCCAAGGATGCGTAAATTCTA
TGAAGGTGGCTTTCAAGCTACAATGACCCGACGGGAAGCTGGTCTAATCTTGGGTATCAGGTCTGTGTTGCATAAAAGCA
TAACACCCATACCATCAGTGTTCAAGAAAGCGTTTTTAAGCGACGCTTAAGCGCGATTAAGCGCTGAGCGATGGCAAAGC
GCTTCGCTTTTGCCCTAAGCGGTAGATTAAGCGTTTTTATCTAAATTTGACCAAAATTTGGCAATTTTTGTACTACTTCT
GCTGGTCTGCTTGTGCAATAATGGAAATATGCTATTTATCTTTTTACTAGGCTATGTTCAAGAACTATTTCCTTCATATT
TTGGCAAAATTCTGTCCACATGATATCTGTTAGGTTATGTCTATTTGAACTGAACTGCATTTTAGTTGTTATTTTGCTTG
CTATGCGAACCTGATATGTATTTGCTATTGTGTGAACTGTATTTCAGATGCTACTTCAATTACCCATGTGCCATGCTTCC
TATTTTCATGTGTATATCATTCAAAATCTGTCAAATTCTAGCCAATTTCAAAAAACGCTCAAGTGCGATTAAGCTGCGCT
TAAGCGCTCATTGCTCTAAGCTGTGGCCTTCCGCTTCGCTTACGCTTTCCGCTTTCTTGAACATTGCATACCATAGTCAA
GTATTCTTATATA-----TAGCATACATGTATTCATATGTAG-------CACTCTAGTTCAATCTCATGCCATTGAAATT
ACATTTACTTCTGTACAGAACAGGAATAGCACGGAAAGATACAATTTATGCAGCACAGCACACGTAGGGAACTTACTTTG
ACCCCTTCGCCCGCCCATCAGACTCGTGGGAAGAATTTGTTTTTACCGGTACCATTCTCAAATGGACACTAGAAATCCCC
TAAAAGTGATGTAAAAGGATAATAGCCATCATTAGCTTCCTTTACGTATGCTGCAACTGTTATGCTTTCTGAGTAGTCTG
CTGAGATAGCTAATTGTAATATTTTGTAGTTAGTTGTCCTAGCTTCATTTCGTTCCCTGCAGTACGTAGAAGATACTTGG
AACCTTGCAGAAAGTCATGTGGCGATACTGTACAATTCCATACTAAAAACAGATTCACTTTTAGTCCATACTCCATTCTG
ACATTAACACACTAGCATACACATGTACAGATTGATAGCTATACTTAACAAA-TAATTATACCATAAGCTGTAAATGTGG
TTTTAAGCTGCTTCATTAATTTACAGCTGAACATCTTGCAATTAAGGCAAAGGGAACTCTCTCACTTCCAACTACAGAAT
ACTTTACAAATGCCATTTAAGATCAAAAGCAATAGCTTGCTTTCAGTGGGTTTAAATTGTGGTGTAAGATTTGACCATTT
AGTGTCATAATGGAGTGGAGAACC-TAGTCAACCTTTGTTGACCACTGCTTGCATCTCAGC----CAAGTCACGAACTAT
AGAACTGGCTTGCCATCTGACAAAGTCTAAACTTTAACCGAGCTGAGCTCCTGTGTTCCCG-TCACCCTTCTGCAGATCG
GTGTTAATAAGGAGACAGATGTTGCGTTGTAAAGGCTCAGGCCATCATAGTGGCTAAAGTGGAACAAGATTTAAGAGTGA
GATTAAGTAGGCCACAGGCCCACAGCTGTAGTGATATTTGGGCTTGGGGTGAGAATATATCTGGGCTTAAGTTTGTTGCG
AACAGTCTGTTGGATCAATTTATCACCCCACAACCCCATTAGATTTGATTTGGATTAAAATGCTTGGTTCCTGACCGAAT
TCACATGGATCTTAGTTCTGAAATCTGAACCTATCCAAAGGAGCCTTTTGAGTAATTACCTGTGTATAAAAGGATAGAAT
TGCCATCTCAAACTAGGTGCAATGTTGTATATATGTTTCTAGTTTGGCCTGGAGGTCAGTTGAATGCATCAGCAAATAAT
TCCCTGGCAAATTGAGCGCCTGCTTGCAATGATATGTCTCGACTTTTCTGTACATATAAAAAAGAAAAGAAAGACCCATT
GCTAGAAGCTCCTACACCAGGTAGGGTCTGGGGAAGGATTATACGAGGCTGCGTCAAACCCAGGACCATACTCCTGCAAA
GTCCAATGCAGCGAGGCTGCGTCGAACCCAGAACCTCTTGGCACAAGTGCTGAGTA---CTTCACCTCTGCCTCAGGCCT
GTCCTTCTGAATTTTCTGCACGTCGCCAGAAAGATATTTACTCAGTTGATTAAAAACAAACTGTTGAGCTCATGAAGGAG
GAGTTATCAATTATTGACCTGCTATCTTTTTTCGTTGATAGTGTCCCCTGTACTTATA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGACCAACATGTAGAATTAGGTCTTC
ATCTTTTTCCTTCTAAATTTATATGCATCTTGGCATGCCAGACTGGTCATTCTGACATTTGAATAAGTGCCATTTACTTG
TGATTCAACAATTTTGTTTGTGATTTATGATTTGAGACGTGTTTTGTGTGTCTTATCATCATTGTTAAGTTGCCATGTTT
CCTTTTGATTCCTTCAGGGAAAACGTCCGTCCTGATAAGGTGAAAGAGGCACACAAGAGGGTCATGGTTGCCAATCACCC
GGATGCAGGAGGAAGCCATTACCTTGCGTCGAAGATCAACGAGGCAAAAGATGTTTTGCTGGGGAAAACTAAAGGAGGTG
GTTCAGCCTTTTGATCATATATCATGCAAAATGTGCTCACCGGATGAAGATACTATTATTTTTGCACCTCCAGACTCTGC
ACCTAGAACTAGAAGGCAGACAAAAGCCTTGGTGTATCACTGAAATTTCTGGAGAAAGAACATTAGATGTCTTAGACGTA
GCAGGTTCTTTGACTGTTTGACACTTCCAAGACCAAAGTTGTGCTGGGTTAAGGAATAAATGATGTACTACATGC-----
----GTGTTGAGTTTTGCGTGACATTTGTTCATCTATCTACTCTATTGATATAGCTGTACTGCAATATGGTTCTTCTCTA
GCTCGCAATATCAATTCATATAGTCCTCTTCGTCTTCCTCCAATAGACTTTGCTCTCGTGGAGTCTCCTGTTCTTCAACT
TCTGGAGTGTGCTTTGGCATTTCAAGGTGCCACATCATTATCCGTGACTCGGAGCAGTCAGAAGGGATGCCCTTCCACCC
GTCCTCGTCGCCGACTGCCATTTGTCGTACAAGCTGGATGTAGTCCTGAG---------------AGCTGCCTCCTGAAG
AGATGTTGCTGTTGATGAACC------ATTCCCAGAGTATTGAGCTCCTGAACCCAAGTCCAGATATGCTTATTTCAGGA
GGTAAACAGGAGCTGTTGCGGATTGCGCCTGTATCTTGTGCAGCAGCCGCATCTGTTGTATGTGTCGCTGTTGCATTGAT
TCCTGAGTCCTCGGAGTACCAGCCTGTTATCTGTGATGAGTTACAGGTTGGTCCTTGTAGTGTTACTCTCTGGTCTGCTG
ATGACACAGTTGCCGTTGGCCATGCTGCAACGCCCCTGGATCAAGAATTGCACAAGTGATGTTATTATGTTGCTCTTGTG
CTGGGTGACAAAATTCGCAAAATGGAAAGAAACATGTTGCAAAGCTGCAAGAGAAGGGA-AAGCAGGACGCACCGAGTCT
GCCTGAGCTCTTCAAAGAACCGGAGGTCATATATGGCAGAGGTGGCGGCGAAGTGGACGACCCCGGCCAGCCG
>SNPs
S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------------S--SSSSSS-------S--S---------------S--------------------S--------
------------------S---SS-S------S-SS-SSSSSS-SS----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S------------S-
-SSS------------S--S---S------------S---------S---------------------------------
--------------------------------------------------S-------S-------S-------------
-------------S--------S--S------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------S------------SS----S------------S---------------S-----------
----------------------------SS--------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S---S------------------------------------
----------------------------------------------------------------S---------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S------------S-----------------------S------------------------------
-S------------------------------------------------------------S-----S-----------
--------------------------------------------------------------------------------
--------------------------------------------S----------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------------------S-------------------------------------------------------
---------------------------------------S----------------------------------S---S-
------------------------S--------------S----------------------------------------
-----------------------------------------------S-------------------S------------
--------------------------S-----------S-----------------------------------------
--------------------------------------------------------------------------------
-----------------------S------------------------------------------------S-------
---------------S-S--------------------------------------------------------------
--------------------S-----S-----------------------------------------------------
---------------------------S----------------------------SSS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S----------------S----
----------S--------------------------------------S----------------------------SS
----------------------S---------------------------SSSSSSSSSSSSSSS---------------
------------S-S-------------------------S---------------------------------------
-----------------------S---------------------S-------------------S--------------
--S----------------------------------------------------------------S------------
-------------S--------------------------------------SS----S----------------S----
------SSSSS-------------S----------------------------------------S--------------
----------------------------------------------S--------------------------
>forward_741
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGGAGGAGCATGGTTGTTCT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_2920
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------AAGCTGAGCTCCTGTGTTCC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_2229
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------GCAGCACAGCACATGTAGGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_3461
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATAGGGCCTGGGGAAGGATT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>forward_2959
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------CCTTCACCCTTCTGCGGATT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_3942
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GATTCGTTGGATCTGCCCCT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>forward_3900
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------GTGTTGAGCGCTCACCATTG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_5001
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GGAGCTCCTGAACCCAAGTC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
