>input_sequence_27231
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--------------------------ATGGCGCGGTCCAGGCCTAGGTTCTGGCTCGTGGCGGGCTGCGTCGCCCTGCTG
CTCTGGGCCTCCGTCGCGCAGCTCGTCGCCGTCGGCCGCCTCCTCGCCCTCTTCGGCCTCGCCGGCGGCGCGCCCGGCCC
CTCGCCGCCGCCTTGCTCGCCCCCGCCCCCGCCCCCGCCCCCAAGTGCGTGCCTTTCCGTCTTATTTTTGTTGTTACTAC
TGGCTAGTAAATTTTATCGATTAGTG---------------------------------------TCTACGAGGAAA---
----TAAGTGATAAAGTTATTCATCAACTTTGAAATGATACATGTAAGAGCGAGTGCATTTTGGTGATCACCCTTTCCCA
AATTCGTACCAATTTTCCTGCCAAAGAATACC----------------AATTTGTGAAATTAGAGGGGCCGCTGCTGAAA
GCTTAGCTGCCTTTAGTGAGAAACAAAATGGTTCGCTCTGGAAGGCATGAATTT--------------------------
-----------------------------------------------------------------------------TTT
TGTCAAGATGTTACTATTTCAGTCAATCACCA--------CCAACAGTAATTGCGACTTTTTCTCCAGGAATCTACAAAA
GCAATGGTTATCTGAAGATATCCTGCAATGGGGGTCTTAATCAGATGCGTTCAGAGGTACGTTGTCTTTTCTTACTTCGG
CACTTCAATCCTAGCTTTCCCATTCTAACACTTCCTGTTGTTTTGTATCTCTGTTATACAAGATATGCGACATGGTGGCA
GTGGCACGTTTGCTAAACCTCACGATGGTTGTTCCAGAACTTGACAAGAGATCATTCTGGGCTGATCAGAGGTGCATTCC
ATTTTCTTGAAGAGGTGCTCTATGTGTTAACCAGGTTGATATCTTAAGCGACTAGTGTTCTGTATGCTTTTCAGCAATTT
TGGCGACATATTTGATGTGAGGCATTTCATTACCTCATTAAGAGATGAAGTGCGCATTGTCAAACGGCTGCCAAAGAGGT
TTAGTCCAACAGATTCGAGCACTACACTTGACATGTCACCTGTGAGTTGGTCAGATGAGAAATATTACTTGCACCAGGTT
TGTCAACTTATCTGGGATCCACTCTTGCTTTCACGGTACATGCATT----------------------------------
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-----------------------------------------------------ACTATGTGCTCTTCATAGTCTCTCACT
TGTGCAGATCTCACCACTCTTCAGCAAATATAAAGTCATCCACTTTAACAAGACAGATGCTCGGTTAGCAAATAATGGCA
TCAGTACTGAGCTTCAACTTGTTAGATGCCGTGTTAATTTTCATGCTCTGAAGTTTACCCCTCAAATTGAGGCACTGGGG
AATAAATTGGTACAGAAACTTCGAGACAAGGGATCATTTGTGGCATTGCATTTACGATATGAGATGGACATGCTGGCATT
TTCTGGTTGCAATCATGGCCTTAATCCTGAAGAAGCTGAGGAACTCAAAAGAATGAGGTACAATTTTCGCTGTACAGACT
TTCACCTAACATCAATAAATACAGAGCAGCCTTTTGGATATTGAATCAAGTAATTCCTCACAGAAGAAGGATAATGATTA
CTTTATTGATTCTTGACTTATGTACAAATACTAGCAATGGTGACATAGATGTTGTATATACTAGTTTGT-TCCTGTGGTC
CTGCATACGTT-CTCAAGTTTTTATTGCTTATGTTTAGAGCCGGATGCAGTGTAACAT------CAGTCTCAACAAATGG
CGCTTTTTCATACATAGTTTCCCATTTCATGATGGATTCATGTCAATGGAATAGAAATTCAATTGCTCATCTGTTTTTAT
CATAGTCAAATTGTATAAGTGCCATCTTATCTTGGTCTTGCTGTTTTTCTTGAGCTGAAAACTGATGCACAAACTTTGAA
TCACCAGAATCCTAC-TTTT-TTTCTATCAATCAGATATGCATATCCATGGTGGAGAGATAAAGAAATTGATTCGAAAAC
CAAGAGATCAGAAGGACTATGCCCACTTACGCCTGAGGAGACGTCACTGGTTTTGAAAGCACTGGGCTTTGAAAAGGATA
CTCTCATATACATTGCTGCTGGTGAAATTTACGGGGGAGAAAAGAGATTGAAACCATTACGAGCTGCTTTTCCAAAACTT
GTAAGTGTGCCCAACACTTTGTCAATTACATTGGCTTGTTCAT-TTTCGTGGCAATAACTATGGGGTGCAATCCTGACTA
TTCAATTGCAAGTGAGATTTTGCTCGTTTCTGCCAGCACTGCTTGCAGTTTCTGACCTTTCATGCCATGTGTCCAAAGTA
TGATACTCCCCCTGTATGGACCAAACCTGCTAATATAAGCAATACCAATTATCTTTCAGGTAAGAAAAGAGATGCTGCTA
GATTCAGAACCTCTGCGCCAGTTTCAAAACCACTCTTCTCAGATGGCTGCACTCGATTTCATTGTATCCACTGCTAGTGA
TGTTTTCCTTCCTACTTTTGATGGTAACATGGCGAAACTTGTTGAAGGCCACAGAAGGTATCTATACAGCAAGATTTCAT
CTTATAAAAACAATCAAATAGCTTTTCAAGATATAGTGTGTACATATAGCCATCATCTGCAACAAGATTCGTACTAGTTT
ACTCTTTATAAAAATAAGCAAATAGTATCATCTAGTCATAATTATCTGGTTGAATTTCTATCTTCAGGTTCCTGGGTTTC
CGAAAAAGCGTGTTGCCAGACCGTCGGAAACTAGTTGAACTTATAGACCTGTACAACAACAAGACAATTTCCTGGGAGAA
TTTTACATTTTCTGTCCAAGAAGTTCATAGAGGCCGTGTGGTCCAACCGTCCTGTCGTCGGAAACTCGAAAACAAGCCGA
AGGAGGAGGATTACTTCTACGCTAACCCCCACGAGTGCCTGGCCAATTCAAGCCTGTGCAGTGGAAGCAAGGATACAGTC
ACTGTAAGGTGA--------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G284800
ACCCCGCCATGGCTGTCGCTTGTTAGATCGCCGCCG--------------------------------------------
----GAACCGAAGGAGACTCCTCTCGCACGGCGACCAAGGGGATCGCCGCCGGAGCCGAAGGGGGCTCCTCTCGCAACGG
CAACGATGGGGATCACCGCCGGCGCCGCAGATGCAGTGCATGAGCTCCTCCTCTCCTCGCATAGCGACGAAGGGGAACGC
CGCCGGCCATTACGCGCA----------ACCGCGGTGACCCCTCCAAGGCTACCGCCTGTCGGACCCAGCTCGGCTGCCT
CCACCGCTGGCATCAGGGCCAG-CATCGCCGGAGAACCGCCTGGGATGG-------------------------------
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--------AGAGAGGAATGATTCGGACGCGGGT--TGTGTGTGGGGAAGGAAGAGGATAAGGGAGGGGATAGCGACGGGA
GTGAGAAGAAGGTGAGTGGTG--CGTGTGGGTCGTTTGCGACGATTTCTGTTTTCCCCGAACGATGTTGCTCGCTGACAT
GGCTCGGGTCCACTGCTTTAAGATCTGTAATCAAATCCAGCGGTGGAAAGGACATTCGGACCCAAATTCTAAAATACTGT
GCGTTCGGGAGTTATTGATTCCGAAAAACTTTGAAAATCACAAAGTCTAGAAAAACCTAGCCTACAAGAGCTCCCCGAGT
CTTGGAACTGCCCGTCTCATGTACTTACTCCACCAGTGCAGTGCAGTGTGCTAAGCGTAGCCCACCTGGTGATCACACAC
TTAGCCAAGGATAATCCGTGTG-----AAGCCAAGCCGCCGGTCCTCCTCCTACCAGCCAGCTAG--CAACAACACATGC
CACAAAAGCCAAACGCGTAG-CCGCAGGCCGCAGCAACACACACAGACACAAACACACACACTCTCTC------------
--------------------TGTGTGTGTGCCCCAGTCTCCCCGCAGCTAGGCCAACAAGATCTTAGCTCCCAACGGG-C
CCTCCCCGTCCCCGAGATCCCCCGGAGCCGCCGCCGCCG---CCGCCGCGACCTCAAAAAAATGCCGGCGCCGATCGGGG
GCCGGCGCCGGCTGTGAGGCTGCGATATGGCGCGGTCCAGGCCTAGGTTCTGGCTCGTGGCGGGCTGCGTCGCCCTGCTG
CTCTGGGCCTCCGTCGCGCAGCTCGTCGCCGTCGGCCGCCTCCTCGCCCTCTTCGGCCTCGCCGGCGGCGCGCCCGGCCC
CTCGCCGCCGCCTTGCTCGCCCCCGCCCCCGCCCCCGCCCCCAAGTGCGTGCCTTTCCGTCTTATTTTTGTTGTTACTAC
TGGCTAGTAAATTTTATCGATTAGTG---------------------------------------TCTACGAGGAAA---
----TAAGTGATAAAGTTATTCATCAACTTTGAAATGATACATGTAAGAGCGAGTGCATTTTGGTGATCACCCTTTCCCA
AATTCGTACCAATTTTCCTGCCAAAGAATACC----------------AATTTGTGAAATTAGAGGGGCCGCTGCTGAAA
GCTTAGCTGCCTTTAGTGAGAAACAAAATGGTTCGCTCTGGAAGGCATGAATTT--------------------------
-----------------------------------------------------------------------------TTT
TGTCAAGATGTTACTATTTCAGTCAATCACCA--------CCAACAGTAATTGCGACTTTTTCTCCAGGAATCTACAAAA
GCAATGGTTATCTGAAGATATCCTGCAATGGGGGTCTTAATCAGATGCGTTCAGAGGTACGTTGTCTTTTCTTACTTCGG
CACTTCAATCCTAGCTTTCCCATTCTAACACTTCCTGTTGTTTTGTATCTCTGTTATACAAGATATGCGACATGGTGGCA
GTGGCACGTTTGCTAAACCTCACGATGGTTGTTCCAGAACTTGACAAGAGATCATTCTGGGCTGATCAGAGGTGCATTCC
ATTTTCTTGAAGAGGTGCTCTATGTGTTAACCAGGTTGATATCTTAAGCGACTAGTGTTCTGTATGCTTTTCAGCAATTT
TGGCGACATATTTGATGTGAGGCATTTCATTACCTCATTAAGAGATGAAGTGCGCATTGTCAAACGGCTGCCAAAGAGGT
TTAGTCCAACAGATTCGAGCACTACACTTGACATGTCACCTGTGAGTTGGTCAGATGAGAAATATTACTTGCACCAGGTT
TGTCAACTTATCTGGGATCCACTCTTGCTTTCACGGTACATGCATT----------------------------------
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-----------------------------------------------------ACTATGTGCTCTTCATAGTCTCTCACT
TGTGCAGATCTCACCACTCTTCAGCAAATATAAAGTCATCCACTTTAACAAGACAGATGCTCGGTTAGCAAATAATGGCA
TCAGTACTGAGCTTCAACTTGTTAGATGCCGTGTTAATTTTCATGCTCTGAAGTTTACCCCTCAAATTGAGGCACTGGGG
AATAAATTGGTACAGAAACTTCGAGACAAGGGATCATTTGTGGCATTGCATTTACGATATGAGATGGACATGCTGGCATT
TTCTGGTTGCAATCATGGCCTTAATCCTGAAGAAGCTGAGGAACTCAAAAGAATGAGGTACAATTTTCGCTGTACAGACT
TTCACCTAACATCAATAAATACAGAGCAGCCTTTTGGATATTGAATCAAGTAATTCCTCACAGAAGAAGGATAATGATTA
CTTTATTGATTCTTGACTTATGTACAAATACTAGCAATGGTGACATAGATGTTGTATATACTAGTTTGT-TCCTGTGGTC
CTGCATACGTT-CTCAAGTTTTTATTGCTTATGTTTAGAGCCGGATGCAGTGTAACAT------CAGTCTCAACAAATGG
CGCTTTTTCATACATAGTTTCCCATTTCATGATGGATTCATGTCAATGGAATAGAAATTCAATTGCTCATCTGTTTTTAT
CATAGTCAAATTGTATAAGTGCCATCTTATCTTGGTCTTGCTGTTTTTCTTGAGCTGAAAACTGATGCACAAACTTTGAA
TCACCAGAATCCTAC-TTTT-TTTCTATCAATCAGATATGCATATCCATGGTGGAGAGATAAAGAAATTGATTCGAAAAC
CAAGAGATCAGAAGGACTATGCCCACTTACGCCTGAGGAGACGTCACTGGTTTTGAAAGCACTGGGCTTTGAAAAGGATA
CTCTCATATACATTGCTGCTGGTGAAATTTACGGGGGAGAAAAGAGATTGAAACCATTACGAGCTGCTTTTCCAAAACTT
GTAAGTGTGCCCAACACTTTGTCAATTACATTGGCTTGTTCAT-TTTCGTGGCAATAACTATGGGGTGCAATCCTGACTA
TTCAATTGCAAGTGAGATTTTGCTCGTTTCTGCCAGCACTGCTTGCAGTTTCTGACCTTTCATGCCATGTGTCCAAAGTA
TGATACTCCCCCTGTATGGACCAAACCTGCTAATATAAGCAATACCAATTATCTTTCAGGTAAGAAAAGAGATGCTGCTA
GATTCAGAACCTCTGCGCCAGTTTCAAAACCACTCTTCTCAGATGGCTGCACTCGATTTCATTGTATCCACTGCTAGTGA
TGTTTTCCTTCCTACTTTTGATGGTAACATGGCGAAACTTGTTGAAGGCCACAGAAGGTATCTATACAGCAAGATTTCAT
CTTATAAAAACAATCAAATAGCTTTTCAAGATATAGTGTGTACATATAGCCATCATCTGCAACAAGATTCGTACTAGTTT
ACTCTTTATAAAAATAAGCAAATAGTATCATCTAGTCATAATTATCTGGTTGAATTTCTATCTTCAGGTTCCTGGGTTTC
CGAAAAAGCGTGTTGCCAGACCGTCGGAAACTAGTTGAACTTATAGACCTGTACAACAACAAGACAATTTCCTGGGAGAA
TTTTACATTTTCTGTCCAAGAAGTTCATAGAGGCCGTGTGGTCCAACCGTCCTGTCGTCGGAAACTCGAAAACAAGCCGA
AGGAGGAGGATTACTTCTACGCTAACCCCCACGAGTGCCTGGCCAATTCAAGCCTGTGCAGTGGAAGCAAGGATACAGTC
ACTGTAAGGTGAGCACATTTGCAGCCTCGCCTGTGCAAGTTACTGTTTGTGATGATCCGCGGACTGAAGCCGGCAAGCAG
GCAGAGTCCCCGATGATCGTTTAACCGATGTTGGCAGTGTTCTGTTGTATAGCCCAGGTTTTTCTTC-TTCTTTCTATTC
TGCAATCCATTCATTTATTTTGAAGCTTGCCAAAATAGGGAGGAGGCTTTGTGTAAATTTTTGTTCGTCGTTTGCGCTAT
TGTTCACTGTTGATTAAATTC--ATGATTATATCGGAAGGGATATGCAATTGCCACGGTGAACAACCGAGAGACATTTTG
GTTTCATTAAGTGTTGTTATTTTTCCTA----------------------------------AACTCCTCATTTCCATCC
ATTATCCATGTG--AAGCTTTCTCTACCTATCCCAGCCAAAAAAATATACTGTATATAGAAAATAAATGAAACTAAGCCA
CACTAAGCTACAAGATCAGCGGCTGGATTTCAGGCGGCCGGCGCCACCGCGCCGGCTCCCGAGCCTTGTCCTCCTCTCGT
CGGAGAGCTGCCTGGCGAAGCCGGCGAGCGCGTCGGCGTTGTTCCCGGCCCCCTTTACCTCCTCGTACCTCCCGGTCTCG
ACGTTCACCCTGGACACCCTCTGCGCCAGCATCCGCTCGCCGATCCTGAGGAGCTCCGCCATGTTCTCGGGCGTGGCGGC
GTCCACCGTGGCCGCCGGGCCGTGGAGCGAGTTGTCCTGGATGCGGAGGTAGTTGGCGTCGCTGTGCAGCGACTGGAAGA
GCACGGCGGCGTGGATGTCGACGAGGTCGGAGCTGGCGGCCATGAAGATGTCGATGATGGGCGCCATGCCCTTGTTGCGC
AGCCAGCTGATGATGCCCCACTGGGAGCACTGCTTCGCCGTGTACAGCCCCTGGTCGGACGTCGAGCCGGTCCCGACGGA
CAGCACCAGGAACTTGCCGCAGTCCGACGGCTCCACCGGGTACAGCTCCTCCCTGTCCTTGCCCATCATCTTCTTGGTGA
TCTGCGTCATC
>chr4D_1
ACCCCACCATGGATGTCCCTTGTTGGATCGCCGCCG--------------------------------------------
----GAGCCGAAGGAGACTCCTCTCGCACGGCGACCAAGGGGATTGCCGCCGGAGCCGAAGGGGGCTCCTGTCGAAACGG
CGACGATGGGGATCACCGCCGGCGCCGCAGATGCAGTGCATGAGCCCCTCCTCTCCTTGCATGGCGACGAAGGGGAACAC
CGCCAGCCATTACCCGGAGTTGCCGCAGACCGCCGTGACCCC-CCAAGGCTACCGCTTGTCGCACCCAGCTCGGCTGCCT
CTACCACTGGCGACAGGGCCAGCCATCGCCGGAGAACCGCCTGGGATGG-------------------------------
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--------ATAGAGGAATGATTTGGCCACGGGTTGTGTGTGTGGGGAAGGAAGAGGATAAGGGAGGGGATAGCGACGGGA
AAGAGAAGAAGGTGAGTGGTG--TGTGTGGGTCGTTCACGACGATTTCTGTTTTCCCCGAACGATATTGCTCGCTGACGT
GGCTCGGGTCCACTGCTTTAAGATCTGTAATCAAATCCAGCGGTGGAAAGGACGTTCGGACCCAAATTCTAAAATACTGT
GCGTTCGGAAGTTATTGATTCCG---------------------------------------------------------
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>chr1B_1
ACCCCGCCATGGCTGTCGCTTGTTGGATCACCGCCG--------------------------------------------
----GAGCCGAAGGAGACTCCTCTCGCACGACGACCAAGGGGATCGCCGCCAGAGCCGAAGGGGGCTCCTCTCGCAACAG
CGGCGATGGGGATCACTGCTGGCGCCGCAGATGCAGTGCATGAGCTCCTGCTCTCCTCGCGTGGCGACGAATGGGAACGC
CGGCGGCCATTACGCGCAGCCGCCGCACACCGCGGTGACCCCTCCAAGGCTACCGCCTGTCGGGCGCAGCTCAGCTGCCT
CCACCGCTGGCAACAGGGCCAGCTATCGCCGGAGAACCACCTGGGAAGG-------------------------------
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--------AGAGAGGAATGATTCGAACGCGGGT--TGTGTGTGGGGAAGGAAGAGGATAAGGGAGGGGATAGCGAGGGGA
GTGAGAAGAAGGTGAGTGGTGAGTGTGTGGGTCGTTCGCGACGATTTCTGTTTTCCCCGAACGATGTTGCTCGCTGACGT
GGCTCGGGTCCACTGCTTTAAGATCTATAATCAAATCTAGCGGTGGAAAGGACGTTCGAACCCAAATTCTAAAATACCGT
TCGTTCGGGAGTTATTGATTCTGTAAA-----------------------------------------------------
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>chr6D_1
ACCCCGCCATGGATGTCGCTTGTTGGATCGCCGCCGGAGCCGAAGGAGACTCCTTTCGCACGGCGACCAAGGGGATCGCC
GCCGGAGCCGAAGGAGACTCCTTTCGCACGGCGACCAAGGGGATCGCCGCCGGAGCCGAAGGGGGCTCCTGTCGAAACGG
CGACGATGGGGATCGCCGCCGGCGCCGCAGATGCAATGCATGAGCTCCTCCTCTCCTCGCGTGGCGACGAAGGGGAACGC
CGCCGGCCATTACCCGGAGCTGCCGCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATAGAGGAATGATTCGGCCACGGGTTGTGTGTGTGGGGAAGGAAGAGGATAAGGGAGGGGATAGTGACGGGA
GAGAGAAGAAGGTGAGTGGTGCGTGC--GGGTCGTTCGTGACGATTTCTGTTTTCCCCGAACGATATTGCTCGCTGACGT
GGCTCGGGTCCACTGCTTTAAGATCTGTAATCAAATCCAGCGGTGGAAAGGACGTTCGGACTCAAATTCTAAAATACTGT
GCGTTCGGAAGTTATTGATTCCG---------------------------------------------------------
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>chr4B_561
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----------------------GAAAAACTATGAAAATCACAAAGTCTAGAAAACCTAGGCTG-CAGGAGCTCCCCAAGT
CTTGGAATCGCCCGTCTCATGTAT--ACTCCACTAGTGTAGTGGCAGT--------------------GTGCTCACACAC
TTGGCCAAGGATAATCCATGT-----CAAGCCAAGCCGCCGGTCCTCCTCCTACCAGCTACCGCTACCAACAACACAAT-
CACAAAAGCCAAACGCGTAG-CCGCAGGCCGCAGCAACACTCTCTCTCT----CTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTGTGTGTGTGTGTGTGTGTGCCCCAGTCTCCCCACAGCTAGGCGAACAAGATCTTAGCTCCCCAGGGG-C
ACGGGCCCTCCCCGAGATCCTCCGGAGCCGCCGCCGCCGCCGCGACCTCCAAA-----AAA-TGCCGGCGCCGATCGGGG
GCCGGCGCCGGCTGTGAGGCTGCG--ATGGCGCGGTCCAGGCCTAGGTTCTGGCTCGTGGCGGGCTGCGTCGCCCTGCTG
CTCTGGGCCTCCGTCGCGCAGCTCGTCGCCGTCGGCCGCCTCCTCGCCCTCTTCGGCCTCGCCGGCGGCGCGCCCGGCCC
CTCGCCGCCGCCTTCCTCGCCCCCGCCCCCGCCCCCGCCCCCAAGTGCGTGCCTTTCCGCCTTATTTT---TGTTGTTAC
TGGCTAGTAAATTTTATCGATTAGTTC----------------------------------TGTATCTACGAGCAAATAC
TCCGTAAGTGATAAAGTTATTCAAT---GGCGAAATGGTACATGTAAGAGTGGGTGCGTTTTTGTGATCACCCTTTCCCA
AATTCATACCAATTTTCCTGCCAAAGAAAGAAATTCTTACTGGTACCAAATTTGTGAAGTTAGAGGGGCTGCTGCTGAAA
GCTCAGCTGCCTTTAGCGAGA---AAAATGGTTCGCTCTGGAAGCCTTGAAAATCCGAAATTGAAGCTC-----------
----------------------------TACCTTGATGTTTTGTTGAGATACGTACTTATTTAAGGGCTTGCAAATATTT
TGTCAAGATGTTACTATTTCAGTCAATCGCCA--------CCAACAGCAAATCTGACTTTTTCTCCAGGAATCTACAAAA
GCAATGGTTATCTGAAGATATCCTGCAATGGGGGTCTTAATCAGATGCGTTCAGAGGTCAGCTGTGTTTGCTTACTTCCG
CTTTTCAATCCTAGCTTTCCCATTCTAACTCTTGCCGATGCGTTC---------------AGATATGTGACATGGTGGCA
GTGGCGCGTTTGCTAAACCTCACGATGGTTGTGCCAGTGCTTGACAAGAGATCATTCTGGGCTGATCAGAGGTTCATCCC
ATTTTCTTGAAGAGGTGCTCTATGTATTAACCAGGTTGATATCTTAAGCAACTAGTATTTTGTATGCTTTTCAGCAATTT
TGGAGACATATTTGATGTGAGGCATTTCATTACCTCATTAAGAGATGAAGTGCGCATTGTTAAACGGCTGCCAAAGAGGT
TTGGTCCAACAGATTCAAGCACTACACTTGACATGTCACCTGTGAGTTGGTCAGATGAGAAATATTACTTGCACCAGGTT
TGTCAGCTTATCTGGGATCCACTCTTGCTTTCACGGTACATGCATTACTAGGCAAATTTAACAAATTTGACCTATAGACG
GAATCAAATCATAGAATGAACTATCCGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCCGCCACGAAGGCGC
CACACTACGCTGTGCAACGCCTCACAGATAGGCGCTACACGGCCAGCGTCGCACACATGTGATCAGAAAATTACTAAGTC
GTGTGCAGCGCCTGAGAGCTAAGCGCCACACTATACAGTGCAGCGCCTAGCTCCTAGGCGTTGCACTAGTGCAGCGCCTA
GCTCCCAGGCGTTGCACTAGTGCAGCACCTGAGAGCTAGGCGCCACAGGTCAGCCGCGTGAAATAGTTCTACGGACAGTT
CATTCTGTGATTTAATTGCGTCTATAGGTCAAATTTATCAAATTTGCCGCATTACTATGTACTCTTCATAGTCTCTCACC
TGTGCAGATCTTACCACTCTTCAGCAAATATAAAGTCATCCACTTTAATAAGACAGATGCTCGGTTAGCAAATAATGGCA
TCAGTACTGAGCTTCAACTTGTTAGATGCCGTGTTAATTTTCATGCTCTGAAGTTTACCCCTCAAATTGAGGCTCTGGGG
AATAAATTGGTACAGAAACTTCGAGACAAGGGATCCTTTGTGGCATTGCATTTACGATATGAGATGGACATGCTGGCATT
TTCTGGTTGCAATCATGGTCTTAATCCTGAAGAAGCTGAGGAACTCAAAAGAATGAGGTACAATTTT------------T
TTCACCTAACGTCAAGAAATACATAGTAGCCTTTTGGAGATTGACTCAAGTAATTCCTAACAGAAGAAGGATAATGATTA
C-TTATTGATTCTTGACTTATCTACAGATACTAGCAATGGTGACATAGATGCTGTATATATTAGTTTGTCTCCTGTGGTC
CTGCATACATTTCTCAATTTTTTATTGCTTATGTTTAGAGCCGGATGCAGTGTAACATCAGTATCAGTCTCAACAAATGG
CGCTTTTTCATACAT---TTCCCATTTCATGATGGATTCATGTCAATGGAATAGAAATTCAATTGCTCATCTGTTGTTAG
CATATTCAAATTGTCTAAGTGCCATC-TATCTTGGTCTTGCTGTTTTA-TTGAGCTGAAAACTGATGCACAAACTTTGAA
TCACCAGAATCCTACTTTTTCTTTCTATCAATCAGATATGCATATCCATGGTGGAGAGAAAAAGAAATTAATTCGAAAGC
CAAGAGATCAGAAGGACTATGCCCACTTACGCCTGAGGAGGCATCACTGGTTTTGAAAGCCCTGGGCTTTGAAAAGGATA
CTCTCATATACATTGCTGCTGGTGAAATTTACGGGGGAGAAAAGAGATTGAAACCATTGCGAGCTGCTTTTCCAAAACTT
GTAAGTGTGTCCAACACTTTGTCAACTACATTGGCTTCTTCATGTTTCATGGAAATAACTACAGTGCAAT-TCCTGACTA
TTC-ATTGCAAGTGAGATTTTGCTCGTTTCTGCCAGCACTGCTTGCAGTTTCTGACCTTCCATGCCATGTGTCCAAAGTG
TGATACTCCCCCTGTATGGACCAAACCTGCTAATATAAGCAATACCGATTATCTTTCAGGTAAGAAAAGAGATGCTGCTA
GATTCAGAACCTCTGCGCCAGTTTCAAAACCACTCTTCTCAGATGGCTGCACTCGATTTCATTGTATCCACTGCTAGTGA
TGTTTTTCTTCCTACTTTTGATGGTAACATGGCGAAACTTGTTGAAGGCCACAGAAGGTATCTATACAGCAAGATTTCAT
CTTATAGAAACAATCAAATAGCTTTTCAGGATATAGTGTGTAGATATAGCCATCTTCTGCAACAAGATTCGTACCAGTTT
ACTCTTTATAAAAATAAATAAATAGTATCATCTGGTCATAATTATCTGGTTGAATTTTCATCTTCAGGTTCCTGGGTTTC
CGAAAAAGCATGTTGCCAGACCGGCGAAAACTAGTTGAACTTATAGACTTGTACAACAGCAAGACAATTTCCTGGGAGAA
TTTTACATTTTCTGTCCAAGAAGTTCATAGAGGCCGTGTAGTCCAACCATCTTGTCGGCGAAAACTCGAAAACAAGCCAA
AAGAGGAGGATTATTTCTACGCTAACCCCCACGAGTGCCTGGCCAATTCAAGCCTGTGCAGTGGAAGCAAGGATACAGTC
ACTGTAAGGTGAGCACATTTGCAGCCTCGCCTGTGCAAGTTACTGTTTGTGATGATCCGCGGACTGAAGCCGGCAAGCAG
GCAGAGTCGCCAC-GATCGTTTAACTGGCGTTCCCAGTGTTCTGTTGTATAGGCCAGGTTTTTCTTTTTTCTTTCTATGC
TGCAATCCATTCATTTATTTTCAAGCTAGCCAAAGTAG---GGATGCTGTGTGTAAATTTTTGTTGGTCGTTTGCGCTAT
TGTTCACCGGTGATTAAATTC--ATGATGATATCGGAAGGGATATACAATTGCCACGGTGACCAATTGAGAGACATTTTG
GTTCCATCAAGTGTTGTTATTTTTCCA----------------------------------GAACTCCTCATTTCCTGTC
ATTATCCATGTG--AAGCTTTCTCTACCTATCCCAGCCAAAAAGATATACTGTATATAGAAAATGAATGAAACTAAGCCA
CACTAAGCTACAAGATCAGCGGCTGGATTTCAGGCGGCCGGCGCCACCGCGCCGGCGGCCGAGCCTTGTCCTCCTCTCGT
CGGAGAGCTGCCTGGCGAAGCCGGCGAGCGCGTCGGCGTTGCTCCCGGCCCCCTTTATCTCCTCGTACCTCCCGGTCTCC
ACGTTCACCCTGGACACCCTCTGCGCCAGCATCCGCTCGCCGATCCTGAGGAGCTCCGCCATGTTCTCGGGCGTGGCGGC
GTCCACCGTGGCCGCCGGGCCGTGGAGCGAGTTGTCCTGGATGCGGAGGTAGTTGGCGTCGCTGTGCAGCGACTGGAAGA
GCACGGCGGCGTGGATGTCGACGAGGTCGGAGCTGGCCGCCATGAAGATGTCGATGATGGGCGCCATGCCCTTGTTGCGC
AGCCAGCTGATGATGCCCCACTGGGAGCACTGCTTCGCCGTGTACAGCCCCTGGTCGGACGTCGAGCCGGTCCCGACGGA
CAGCACCAGGAACTTGCCGCAGTCCGACGGCTCCACCGGGTACAGCTCCTCCCTGTCCTTGCCCATCATCTTCTTGGTGA
TCTGCGTCATC
>chr4A_639
GTAC----------------------------------------------------------------------------
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-----------------------T--ACTCCACCAGTGTAGTGCGGTGTGCTAAGCGTAGCCCACCTAGTGATCACACGC
TTGGCTAAGGATAGTCCATGCCAAGCCAAGCCAAGCCGCCGGTCCTCCTCCTACCAGCCAGCT-TACCAACAACACAAGC
CACAAAAGCCAAACGCGTAGGCCGCAGGCCGCAGCAACACACACACACT----CTCTCTCTCTCTGTG------------
--------------------TGCGCCTGCGCCCCAGTGTCCCCACAGCTAGGCCAACAAGATCTTAGCTCCCAACGGGCC
CCTCCCCGTCCCCGAGATCCTCCGGAGCCGCCGCCGCCGCCGCCGCCGCGACCTCCAGAAA-TGCCGGCGCCGATCGGGG
GGCGGCGCCGGCTGTGAGGCTGCG--ATGGCGCGGTCCAGGCCTAGGTTCTGGCTCGTGGCGGGCTGCGTCGCCCTGCTG
CTCTGGGCCTCCGTCGCGCAGCTCGTCGCCGTCGGCCGCCTCCTCTCCCTCTTCGGCCTCGCCGGCAGCGCGCCCGGCCC
CTCGCCGCCGCCTTCCTCGCCCCCTCCCCCGCCGCCGCCCCCAAGTGCGTGCCTTTCCGCCTAATTTT---TGTTACCAC
TGGCTAGTAAATTTTATCGATTAGTTCTTGCATCTACTGGCTAAATTTTATCGGTCAGTATTGTATCTACGAGCAAA---
----TAAGTGATGAAGTTATTCAAT---TTTGAAATGATACATGTAAGAGTGGGTGCATTTTTGTGATCACCCTTCCCCA
AATTCATACCAATTTTCCTACCAAAGAAAGAAATATATA---GTACCAAATTTGTGAAGTTAGAGGGGTTGCTGCTGAAA
GCTTAGCTGCCTTTAGTGAGAAACAAAATGGTTCGCTCTGGAAGGCATGAAAAATGGGAAAATTAACTGATTGATATCTC
GGTGGGCGGGGGGAATAGAAGCCGCAGTTACCTTGATGTTTTGTTGAGATAC----TTATTCAAGGGCTTGCAAA-ATTT
TGTCAAGATGTTACTATTTCAGTCAATCGCCAGTTCGCCACCAACAGTAATTGCGACTTTTTCTCCAGGAATCTACAAAA
GCAATGGCTATCTGAAGATATCCTGCAATGGGGGTCTTAATCAGATGCGTTCAGAGGTCAGTTGTCTGTGCTTACTTGCG
CTTTTCAATCCTAGCTTTCCCATTCTAACCCTTCTCA---TTTTGAATCTCTCTTATT-AAGATATGTGACATGGTGGCA
GTGGCGCGTTTGCTAAACCTCACGATGGTTGTGCCAGAGCTTGACAAGAGATCATTCTGGGCTGATCAGAGGTTCATTCC
ATTTTCTTGAAGAGGTGCTCTATGTATTAACCAGGTTGATATCTTAAGCGGCTAGTGTTCTGTATGCTTTTCAGCAATTT
TGGAGACATATTTGATGTGAGGCATTTCATTACCTCATTAAGAGATGAAGTGCGCATTGTCAAACGGCTGCCAAAGAGGT
TTGGTCCAACAGATTCAGGCATCATGCTGGACATGTCACCTGTGAGCTGGTCAGATGAGAAATACTACTTGCACCAGGTT
TGTCAGCTTATCTGGGATCCATCCTTGCTTTATGGTACATGT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATTGCTATGTGCTCTTCATAGTCTCTCACT
TGTGCAGATCTTACCACTCTTCAGCAAATATAAAGTCATCCACTTTAACAAGACAGATGCTCGGTTAGCAAACAATGGCA
TCAGTACTGAGCTTCAACTTGTTAGATGCCGTGTTAATTTTCGTGCTCTGAAGTTTACCCCTCAAATTGAGGCACTGGGG
AATAAATTGGTACAGAAACTTCGAGACAAGGGATCATTTGTGGCATTGCATTTACGATATGAGATGGACATGCTCGCATT
TTCTGGTTGCAATCATGGCCTTAATCCTGAAGAAGCCGAGGAACTCAAAAGAATGAGGTACAATTTTCGGTGTACAGTCT
TTCACCTAACATCAATAAATACATAGCAGCCTTTTTGATACTGAATCAAGTAATTCCTCAGAGAAGAAGGATAATGATTA
CTTTATTGATTCTTGACTTATCTACAGATACGAGCAATGGTTACATAGATGTTGTATATATTAGTTTGT-TCCTGTGGCC
CTGCATACATTTCTCAAGTTTTTATTGCTAATGTTTAGAGCCGGATGCAGTGTAACATCAGTATCAGTCTCAACAAATGG
CGCTTTTTCATACATAGTTTCCCATTTCATGATGGATTCATGTCAATGGAATAGAAATTCAATTGCTCATCTGTTGTTAG
CATAGTCAAATTGTCTAAGTGCCATCTTATCTTGGTCTTGCTGTTTTTCTTGAGCTGAAAACTGATGCACAAACTTTGAA
TCACCAGAATCCTACTTTTT-TTTCTATCAATCAGATATGCATATCCATGGTGGAGAGATAAAGAAATTGATTCGAAAAC
CAAGAGATCAGAAGGACTATGCCCACTTACGCCTGAGGAGACGTCACTGGTTTTGAAAGCACTGGGCTTTGAAAAGGATA
CTCTCATATACATTGCTGCTGGTGAAATTTACGGGGGAGAAAAGAGATTGAAACCATTACGAGCTGCTTTTCCAAAACTT
GTAAGTGTGTCCAACACTTTGTCAACTACATTGGCTTGTTCATGTTTCGTGGCAATAACTATAGTGCAAC-TCCTGACTA
TTCAATTGCAAGTGAGATTTTGCTCGTTTCTGCCAGCATTGCTTACAGTTTCTGACCTTCCATGCCATGTGTCTAGAGTG
TGATACTCCCCCTGTATGGACCAAACCTGCTAATATAAGCAATACCGATTATCTTTCAGGTAAGAAAAGAGATGCTGCTA
GATTCAGAACCTCTGCGCCAGTTTCAAAACCATTCTTCTCAGATGGCTGCACTCGATTTCATTGTATCCACTGCTAGTGA
TGTGTTCCTTCCTACCTATGATGGTAACATGGCGAAACTTGTTGAAGGCCACAGAAGGTATCTATACAGCAAGATTTCAT
CTTATAAAAACAATCAAATAGCTTTTCAAGATATAGTGTGTAGATATAGCCATCTTCTGCAGCAAGATTTGTACTAGTTT
ACTCTTTATAAAAATAAATAAATAGTATCATCTGGTCATAATTATCTGGTTGAATTTCTATCTTCAGGTTCCTGGGTTTC
CGAAAAAGCGTGTTGCCAGACCGACGGAAACTAGTTGAACTTATAGACTTGTACAACAACAAGACAATTTCTTGGGAGAA
TTTTACATCTTCTGTCCAAGAAGTTCATAGAGGCCGTGTGGTCCAACCGTCCTGTCGGCGAAAACTCGAAAACAAGCCGA
AAGAGGAGGATTATTTCTACGCTAACCCCCACGAGTGCCTGGCCAATTCAAGCCTGTGCAGTGGAAGCAAGGATACAGTC
ACTGTAAGGTGAGCACATTTGCAGCCTTGCCTGTGCAAGTTACTGTTTGCGATGATCCGCGGACTGAAGCCGGCAAGCAG
GCAGAGTCCC-GATGATCGTCTAACCGATGTTCCCAGTGTTCTGTTGTATAGGTCAGGTTTTTCTTTT--CTTTCTATGC
TGCAATCCATTCATTTATTTTGAAGCTTGCCGAAATAGGTAGGAGGCTTTGTGTAAATTTTTGTTGGTCGTTTGCTCTCT
TGTTCACTGTTGATTTATTCATGATGATGATGTCGAAAGGGATATACAATTGCCATGGTGACCAATTGAGAGGCATTTTG
GTTTCATCAAGTCTTGTTATTTTTTCTTGACTACGCAAAAAAAAGTGTTGTTATTTTTCTTGAGCTCATCATTTCCTTTC
ATTATCCATGTGAAAAGCTTTCTCTATCTATCCCCGCCAAAAATT-------TATATAGAAAATAAATGAAACTAAGCCA
CGCTAAGCTACAAGGTCAGCGTCTGGATTTCAGACGGCCGGCGCCACCACGCCGGCGCTCGAGCCTTGTCCTCCTCTCGT
CGGAGAGCTGCCTGGCGAACCCGGCGAGCGCGTCGGCGTTGCTCCCGGCCCCCTTTACCTCCTCGTACCTCCCGGTCTCG
ACGTTCACCCTGGACACCCTCTGCGCCAGCATCCGCTCGCCGATCCTGAGGAGCTCCGCCATGTTCTCGGGCGTGGCAGC
GTCCACCGTGGCCGCCGGGCCGTGGAGCGAGTTGTCCTGGATGCGGAGGTAGTCGCCGTCGCTGTGCAGCGACTGGAAGA
GCACGGCGGCGTGGATGTCGACGAGGTCGGAGCTGGCTGCCATGAAGATGTCGATGATGGGCGCCATGCCCTTGTTGCGG
AGCCAGCTGATGATGCCCCACTGGGAGCACTGCTTCGCCGTGTACAGCCCCTGGTCGGACGTCGAGCCGGTGCCGACGGA
CATCACCAGGAACTTGCCGCAGTCCGACGGCTTCACCGGGTACAGCTCCTCCCTGTCCTTGCCCATCATCTTCTTGGTGA
TCTGCGTCATC
>SNPs
------------------------S-------------------------------------------------------
------S-------------------------------------------------------------------------
-S------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S------------S-----------------------------------------S-
-----------------------------------------------------S--------------------------
------------------------------S-----------------------S-SSS--SSS--S---------S---
-------SS--------------SSS------------S-----S----------------------S------------
--S--------------S---S-----------------------------------------SS------------S--
---------------------------------------------S--SSSSS-S-S-S-S-------------------
-------------------------------------------S------------------------------------
--------------------S----------------------------------S-S---S------------------
------------------------SS------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--------------------------------------------S--------SSS---------
-------------------------S-----------------------------------------------S------
-----------------------SSSSS----------------------S-S---------S-----------------
-----S----------------------SSSS--------------------------S----------S----------
---------------------------------------------------SS---------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
----------------------------------------------------------SS---------S--------S-
-SS--------------------------S-----S-S-------S------S----SS--------S------------
-----S--------------------------S-----S----------------------------------S------
-------------------------S------------------------------------------------------
---S----------------------------------------------------------------------------
--S-------------S---------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S-------S--
-----------------------S--------------------------------------------------------
---------------------S----S---------------------------------S-------------------
--------S-----------------------------------------------------------------------
---------------------------------------------------------------------------S---S
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S---------------S------------------------------------S-S-SSSSS---------
-----------------------------------------------------------S-------------------S
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----------S-------------------------
-----------------SS--------------S----------------------------------------------
-----------------------S------------------------S-------------------------------
---------------------------------------------------------S--S-------------------
-S-----------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SS------------------S-------------S-----------S-
---------------------------------------S-------------------------S--------------
----------------------------S----------------S---------------S---SS-------------
-------S-------------------S------------------------------------------------S-S-
-------------------------------------------S------------------------------------
--------------------------------------------------------S-----------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_1024
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--------------------------------------------CTCCTCCTACCAGCCAGCTA----------------
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>reverse_2139
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----------------------------------------------------------CAAGATATGCGACATGGTGGC-
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>forward_1090
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------------------------------GCAGCAACACACACAGACAC------------------------------
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>reverse_2403
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--AGTCCAACAGATTCGAGCACT---------------------------------------------------------
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>forward_1812
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--------------------------------TCGCTCTGGAAGGCATGAAT----------------------------
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>reverse_3983
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--------------------------------------------------------------GGGGTGCAATCCTGACTA
TTCA----------------------------------------------------------------------------
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>forward_2403
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---------------------------------------------------------------ACGGCTGCCAAAGAGGT
TTA-----------------------------------------------------------------------------
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>reverse_4654
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-------------CTTCTACGCTAACCCCCACG-----------------------------------------------
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>forward_3449
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---------------------------------------------------------------------TTCCTGTGGTC
CTGCATACG-----------------------------------------------------------------------
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>reverse_5006
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---------------------------------------------GCAATTGCCACGGTGAACAA---------------
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-----------
