>input_sequence_27133
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---------------------------TTAGCTTCTACCGCCCTCAACCGTTCCACATCGCACATCCATCCGCCATGAAA
CCACCACCCCACCACCCTCTCCTCCTCGCCATCCGCCACCGCCGCCGCCGCCGCCACCACCACCGCCACCGCCACCGCCA
GCTCTCCTCGTCCTCTGCTGACGCCGTGGCCGCAGCTGAGGTTCTGGGGACGCTCACCAGCGCGCCTTCACCTGACGCGT
CGCGCGACCTCGATTGCCTACTCCGCCGCCTAGGCGACCGCGGTCTGGCATCCGCCCTCTCATCCCTTCCTTCCCCCCTC
CCTGCGGCGTCCGCCCTCCGCCTCCTTCACCACCTTGTTTCCAACGATCCCTCCTCCTCCAGCCACGGCCACGGCCACGA
CCACGACCTCCTGTCCCCCCGCGTCTCCGCGCTCCTCCTCCCCTCCCTCGCGGCCGATCGCTCCACACTCCCCTCCGCTC
GCCGCCTAATCAAGCGCCTCCTACATCACCACCCCCTCCACACTGCCGCAGCGGCTGTGGCCGACGCCTCCTCCACTCCC
TCATCGGATTTACTCCTCAGCACCTTCCTCAACTCCTCCGCACGCGGTTCCCTCAGGGG-TGCCACGGACGCCTTCCATG
TGCTCTCTTCCCGGGGCGCTTCGCCCAACGTTAAGATCTGCAATATGCTCCTTGAAGCTCTTGCACGCGCTGGCCAGCTT
GACGCCGCTTGCAAGGTGTTTGCTGAAATGCGTGATCGTCAGAACGTCACTCCGAATGCATACTCATATACCTCTATGAT
CAAGGCCCTTTGCAGGGCTGGAAAGGTGGACGACGGTCTTAAGATGCTTGCAGAGTTAGTTCATGCTGGGCTGCAGCAAT
GTGCTGGTGTAGTGCCATACAATCTGCTGATGGATGGACTTTGCAAGAGTGGAAGAGTAGACGAGGCTTTTCGGTTGAAG
GAGAGGATGGAAGAGAGCAAGGTGACTCCGAGCGTGGTCACGTTTGGCATTCTGATCAATGGTCTTGCAAGAAGTCAGCG
CTTTGGGGAGGTTGGTGCAGTGTTGCAGGACATGGCTGGGTTAGGAATCACCCCAAATGAGATCATTTACAATGAGCTTA
TTGATTGCCATTGTCGGAAGGGGCATTTCTCAGAAGCAATCAGGTTGTTTGATGAAATGCTCCCAAAGGAGATGAAGTCA
ACAGCAGTGACTTACAACTTGATTGTTAGAGCTCTATGCAAGGAAGGGGAGATGGAGCGTGCTGAGAAGATATTGGAGGA
GATGTTTTCGACTGGGATGGTAGTTCATTTTGGTTTGTTTAATTCAGTGGTTGCAGGGCTTCTCCAAAGGACTGGAAGTT
TGAAGTCTGTGGTAAGGCTTATAAGCGAAATGATTATAAGAGGTATGCGACCAAATGATGCTCTCATGACAGCTTGTGTG
AAGCAGCTTTGCAAGGGCGGGAAACACCAAGAAGCAGTTGGAATTTGGTTGAAGATGTTGAAGAAAGGTTTATCTGTCAA
TATTGCAACTTCTAATGCATTGGTTCATGGGCTTTATGAGGGGAAGAACATGGAAGGAGCTACTGAGGTTCTAAGGACCA
TGGTTAATAAGGGGCTTGAACTGGATAGCATCACTTATAACATAATGATACTAGGTTGCTGCAAAGGCGATAAAATAGAT
GAAGCAATTAAACTCCGTGATGACATGATCAGAAGAGGGTTTAAGCCTAATATTTTCACGTTTAATACAATACTACATGC
TTATTGCATTTTGGGTAAAATGGAAGAGGCCATTCACCTGCTGGATCAGATGAAAATTGAGGGACTTCGGCCAGATATAG
TGTCATATGGCACTGTAATAAATGGATATTGTAAAATAAAGGATATTCATAAAGCAAATGAATATTTGACTGAACTGATG
ACCTGTGGATTAGAACCAAATGTAGTAATCTATAATGCACTTATTGGTGGTTATGGCAGAGTTGGTAACATTTCTGGTGC
AATTGATGTCCTTAACACTATGAAGTCTACTGGCATAAGACCAACTAATGTAACTTACTGCAGTCTTATGCACTGGATGT
TCCATGCTTATCTTGTTGACGAGGCGAAGACCATGTTTGAACAAAGCAGAGAAAACAGCATTGAGGTGGGAGTAATTGGC
TACACAATTATGATACATGGTTTTTGCAAAATAGGAAAAATGGATGAAGCTATGAATTACTTGGAGCAAATGCGATCCAG
GGGTTTACCTCCAAATAAGTTTACTTATACCACTCTGATGTATGCCTATTGTAAATCTGGTAATGACGAAGAAGCCTCCA
AGCTTTTTGATGAGATGCTGAGCTCAGGAATTGTTCCTGACAACGTTACTTACAATACACTAGTTACAGGGTTTTCTCAA
GTGGATCCATTGGACAAGGCTACAGAACTGCCTGCTGAAATATCAAGTGTTTTGACACAGAATGATTGTTTGTACAATGC
ATTAGTTAATAGGATAACCACACCTTGGTGCCAGAAAGAAGCTACTTCCAGTGAATGATGTTTGATTAAGGAACCATAAG
GAAGACTGTTT-CTGAACAGACCCATCCAAGCATGAAAGGGAACTAGAGAGACCACAGAGGCCCTTGCCTTGCTATTGGC
TAGATAGCTTTCTCATCTAGCAGGAACATCAACCGAGTCCATTCATCTCTTATCTTGGACAGCTATCCAACAGCAGCAGG
TCGCGCTTAAAGTTTATTTATGGTATTGTATAGTTGCTCATCAAGCTGCTACCTTGTGGCATGTGG-GGGTGCCCAACAG
AAGCACCAGATTGCCTTGAAGGTTCATAATTGGTAAAATATACACTTTTAGCCAATTAATTAGTTTTTTATTT-------
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>chr1D_1_TraesCS1D01G198900
TGCCAGCAGGGCACGCGAGCACGCGGCGGCATGAGCGTGCAGCGGGCACGGCCAC--GGCCAGCAGGGCCATGGCGACGC
CGTCGGCGGATTGGCACAGCGTCATCTGGACGTCGG-CTCGGGGTGTCAAAATCGTGCGTCTGCAGGACGTCACGACGCG
TGTATGTCGGGTACAAC----------------------------GCGGCGGTACCGTGATCATCTG-GATCACGATCTG
T-ACCGACTCCCGTATAGTGTAGTCAACAAGTCTCTCGTGATCC-AAAAACATCGACATTGGTCGGCGACGTGTTCGTCC
GCTCGGTTTTTGGGAGAGAAATCCACATCATAGGTAGATGT-ATCCG--AAAAATAATCTAATCGCAAAAACGGAATCGT
AGTAACGAGAGGAATCCATTTTTACAAA-A-GTGGGGATCGGATCTTATACCTCCGCGGGATCGACGAAAGCCTGCATCA
T---------------GCTTGACGGAGAGTTGATGGAGCGAAGTGTGCTGATAACGTGTTCCGCAACTCCGCCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGGGCGAGCGTCGTAGACGAAGTAGTCGAAGTAGTTGAAACACGCGAAA-GTAAATGAC
ACAGAGAA----ATGGAGGAGACCAACTTTATTAATCAATGATCAGAGATTACAATGATGGCTCCTCA-TGCTTTATATA
GGGACTA-GG-GGTCAAGGGATAAGTACCCACCTAACGTAAAGC-GGGG-AAA-TGGGA-GGGGCTAT-CCCTAGCGATG
CGCACGCTAGCCGTCGCCACCATCGTGGTGGCCCCGGTTTCCCAACAGAAAGGAGCCGTCCTGTTCCCGTGGAACCCTAT
CAATCCCGCCGCCGTGCCCCGTGTCCGGTGTCTCCTTCGACCTGCGCCCTTGCCCATACGGCGAGCCCCGTGCAGCCCCC
TTCTTGGCTGCTTCGCTGGCTGATCTCCCACCCTTTGATCCAATCTTGGTGGAAGGTCGTCCATCGGTCCCCGGACCCAA
TCCCCACCCTCCATTCAATCTCCTCTATTAGCTTCTACCGCCCTCAACCGTTCCACATCGCACATCCATCCGCCATGAAA
CCACCACCCCACCACCCTCTCCTCCTCGCCATCCGCCACCGCCGCCGCCGCCGCCACCACCACCGCCACCGCCACCGCCA
GCTCTCCTCGTCCTCTGCTGACGCCGTGGCCGCAGCTGAGGTTCTGGGGACGCTCACCAGCGCGCCTTCACCTGACGCGT
CGCGCGACCTCGATTGCCTACTCCGCCGCCTAGGCGACCGCGGTCTGGCATCCGCCCTCTCATCCCTTCCTTCCCCCCTC
CCTGCGGCGTCCGCCCTCCGCCTCCTTCACCACCTTGTTTCCAACGATCCCTCCTCCTCCAGCCACGGCCACGGCCACGA
CCACGACCTCCTGTCCCCCCGCGTCTCCGCGCTCCTCCTCCCCTCCCTCGCGGCCGATCGCTCCACACTCCCCTCCGCTC
GCCGCCTAATCAAGCGCCTCCTACATCACCACCCCCTCCACACTGCCGCAGCGGCTGTGGCCGACGCCTCCTCCACTCCC
TCATCGGATTTACTCCTCAGCACCTTCCTCAACTCCTCCGCACGCGGTTCCCTCAGGGG-TGCCACGGACGCCTTCCATG
TGCTCTCTTCCCGGGGCGCTTCGCCCAACGTTAAGATCTGCAATATGCTCCTTGAAGCTCTTGCACGCGCTGGCCAGCTT
GACGCCGCTTGCAAGGTGTTTGCTGAAATGCGTGATCGTCAGAACGTCACTCCGAATGCATACTCATATACCTCTATGAT
CAAGGCCCTTTGCAGGGCTGGAAAGGTGGACGACGGTCTTAAGATGCTTGCAGAGTTAGTTCATGCTGGGCTGCAGCAAT
GTGCTGGTGTAGTGCCATACAATCTGCTGATGGATGGACTTTGCAAGAGTGGAAGAGTAGACGAGGCTTTTCGGTTGAAG
GAGAGGATGGAAGAGAGCAAGGTGACTCCGAGCGTGGTCACGTTTGGCATTCTGATCAATGGTCTTGCAAGAAGTCAGCG
CTTTGGGGAGGTTGGTGCAGTGTTGCAGGACATGGCTGGGTTAGGAATCACCCCAAATGAGATCATTTACAATGAGCTTA
TTGATTGCCATTGTCGGAAGGGGCATTTCTCAGAAGCAATCAGGTTGTTTGATGAAATGCTCCCAAAGGAGATGAAGTCA
ACAGCAGTGACTTACAACTTGATTGTTAGAGCTCTATGCAAGGAAGGGGAGATGGAGCGTGCTGAGAAGATATTGGAGGA
GATGTTTTCGACTGGGATGGTAGTTCATTTTGGTTTGTTTAATTCAGTGGTTGCAGGGCTTCTCCAAAGGACTGGAAGTT
TGAAGTCTGTGGTAAGGCTTATAAGCGAAATGATTATAAGAGGTATGCGACCAAATGATGCTCTCATGACAGCTTGTGTG
AAGCAGCTTTGCAAGGGCGGGAAACACCAAGAAGCAGTTGGAATTTGGTTGAAGATGTTGAAGAAAGGTTTATCTGTCAA
TATTGCAACTTCTAATGCATTGGTTCATGGGCTTTATGAGGGGAAGAACATGGAAGGAGCTACTGAGGTTCTAAGGACCA
TGGTTAATAAGGGGCTTGAACTGGATAGCATCACTTATAACATAATGATACTAGGTTGCTGCAAAGGCGATAAAATAGAT
GAAGCAATTAAACTCCGTGATGACATGATCAGAAGAGGGTTTAAGCCTAATATTTTCACGTTTAATACAATACTACATGC
TTATTGCATTTTGGGTAAAATGGAAGAGGCCATTCACCTGCTGGATCAGATGAAAATTGAGGGACTTCGGCCAGATATAG
TGTCATATGGCACTGTAATAAATGGATATTGTAAAATAAAGGATATTCATAAAGCAAATGAATATTTGACTGAACTGATG
ACCTGTGGATTAGAACCAAATGTAGTAATCTATAATGCACTTATTGGTGGTTATGGCAGAGTTGGTAACATTTCTGGTGC
AATTGATGTCCTTAACACTATGAAGTCTACTGGCATAAGACCAACTAATGTAACTTACTGCAGTCTTATGCACTGGATGT
TCCATGCTTATCTTGTTGACGAGGCGAAGACCATGTTTGAACAAAGCAGAGAAAACAGCATTGAGGTGGGAGTAATTGGC
TACACAATTATGATACATGGTTTTTGCAAAATAGGAAAAATGGATGAAGCTATGAATTACTTGGAGCAAATGCGATCCAG
GGGTTTACCTCCAAATAAGTTTACTTATACCACTCTGATGTATGCCTATTGTAAATCTGGTAATGACGAAGAAGCCTCCA
AGCTTTTTGATGAGATGCTGAGCTCAGGAATTGTTCCTGACAACGTTACTTACAATACACTAGTTACAGGGTTTTCTCAA
GTGGATCCATTGGACAAGGCTACAGAACTGCCTGCTGAAATATCAAGTGTTTTGACACAGAATGATTGTTTGTACAATGC
ATTAGTTAATAGGATAACCACACCTTGGTGCCAGAAAGAAGCTACTTCCAGTGAATGATGTTTGATTAAGGAACCATAAG
GAAGACTGTTT-CTGAACAGACCCATCCAAGCATGAAAGGGAACTAGAGAGACCACAGAGGCCCTTGCCTTGCTATTGGC
TAGATAGCTTTCTCATCTAGCAGGAACATCAACCGAGTCCATTCATCTCTTATCTTGGACAGCTATCCAACAGCAGCAGG
TCGCGCTTAAAGTTTATTTATGGTATTGTATAGTTGCTCATCAAGCTGCTACCTTGTGGCATGTGG-GGGTGCCCAACAG
AAGCACCAGATTGCCTTGAAGGTTCATAATTGGTAAAATATACACTTTTAGCCAATTAATTAGTTTTTTATTTGCCTGTC
ATAGTTACATGGAGTTCCTTTTATAAATCGACAGTGATAGATAGTACTGTGTACATGATTTGTAACAAATTTTGTGCTGT
GCACTGCATCATGATTGTTTATTCATGCTAATGTGTAGCTGAAAACACTCTACCTAA-TTTTTTTCTTGGTATAGCACCC
AATAGTATTCTGAAAATAGAACATGTGAAGCAAATAATCTTGTTCTCAAGCAGCACATCTTTTATTCCTTCCCTTGACAG
TGGAAAAATAATAACACGTTATGCATAAGCATTGACTTGTACCTATTTACACAGCCTAACTTTGATTGGCAATGACAACA
CCTTGATTGCCTCTCAGTGGATAGATGATGACTGAAAGGAATTACCTGCTTCAAGTTACAGAAGGTAATGATTTCTTCTC
TTGTACCCTTAGGACTACCATTGAACACATTAATTCTTCCCCATGTTCATATGAATCAGCATTAGGTTTGTAGTCCCTTT
TCTGAGATGGACACAAGTGAGTTTGAAATTGAAAGTTTGAACTAAAAGAAATAAACAACATGCGTACAAATTATATTAAT
TTCTGTAATATTTTGTAAATGTACGTTTTTGTAAGAAATTTAACCTCCAAACTTAGGGCAAAAATATGTCCGTTTGTGC-
TCTGCACAAAAATATCAAGTTCATTTCTTTTCTTTTGTACTACATCACTGCAAAATCTGTACTTCTCTACTAT--TTAAA
AAGAACGCAAGGTTCCTTTTCCTGCCAACGGACCGCGTTCTGCTCCAAAGCTTCATCTGCCCGTCTGTTTTTCTTATTGG
TTCATCCCCTCCCATCCACGCTGCCATGAAAAAAGACAGAAGAAAAAACACATGCCTCATCCCCTAATCTTCTCCAACTC
TCTAGGGTTCCCCGCCGCTGCTCCTTCTCTCCAACTTCAATCGCCACACCGATCCCTGACATGAGGAGCGTGACCCCATT
CGGGGAGATTTGCACACCTGTCTCCATTGGAACGCTC
>chr3D_4
CAGCA----GGCACGCGAGCGCGGCGACGGCAGTCGAGCGCTCGGCGACGGGGAC--GGCCAGCAGGGCCATGGCGACGC
CAGTGGCGACG-GGGACATCGTCATCTG--------CCTCGGGAAGGCAAGATCGTGCGTCTTCAGGACGTCACGACGCG
TGTACGTCGGGTACAAC----------------------------GCGGCGGTGCCGTGCTCATCTG-GAGTACGTGTAA
TCACCGTC-CCCCTAGGGTGTAGTCAACAAATCTCTCTTGATCC-AAGAACATCGACATTGGTGGGCGACGTATTCGTCC
GCTCAATTCTTGGGAGAGAAGTCCACACCATAGGTAGATTG-ATCCG--AAAAATAATCTAATCGCAAAAACGGAATCGC
AGTAACGAGAGGAATCCATTTTTACAAAGA-GTGGGGATCGGATCTTATACCTCCGCGGGATCGACGAAAGCCTGCG---
--------TGATGCAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTACTGATAACGTGTTCCGCAACTCCGCCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGGGCGAGCGTCATAGACGAAGTAGTCGAAGTAGTCG-AACACGCGAAA-GTAAATGAC
ACAGAGAGA--TATGGAGGAGACCAGCTTTATTAATCAATGATCAGCGATTACAATGATGGCTCCTCGTTGCTTTATATA
GGGGGTAAAG-GGTCAAGGGATAAGTACCCATTTAACGTAAAGTGGGGG-AAA-CGGGA-GGGGCTAG-CCCGTGCGATA
CGCACGAG-GCCGCCGCCACCCC--TGGTGGCCCCGGTCTCCCAACA---------------------------------
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>chr3A_4
CAGCA----GGCACGCGAGCGCGGCGACAGCAGCCGAGCGCGTGGCGACAGGAAC--GGTCAGCAGGGCCATGGCGACGC
CGGCGGTGGCTTGGC--ATAGTCATCTGGACGTCGGCCTCGGGATGGCAAAATCGTGCGTCTTCGGGACGTCACGACGCG
TGTACGTCGGGTACAAC----------------------------GCCGCGGTGCCGTGCTCATCTTTGAGTACGTGTAA
TCACCGTC-TCCCTAGGGTGTAGTCAACAAATCTCTTTTTATCC-AAGAACATCGATATTGGTCGGCGACGTATTCGTTC
GCTCGGTTCTTGGGAGAGAAATCCACACCATAGGTAGATTT-ATCCG-AAAAAATAAACTAATCGCAAAAACGGAATCGC
GGTAACGAGAGGAATCCATTTTTGCGAA-AAGA-GGGAACGGATTTTATACCTCCGCGAGATCGACGAAAGCCTGCG---
--------TGACGCAGGCTTGACGGAGAGTTGATGGAGAGAAGCGTGCTGATAACATGTTCCGCAACTCCGCCGGTGAGT
CCGGTCCGAGGTTGCGGAGCGAGGGCGAGCGTCGTAGACGAAGTAGTCGAAGTAGTCG-AACACGCTAAA-GTAAATGAC
ACACAGAGA--TATGGAGGAGACCAGCTTTATTAATCAATGATCAGAGATTACAATGATAGCTCCTTGTTGCTTTATATA
GAGACTCCAG-GGTCAAGAAATAAGTACCCACTTAACGTAAAATGAGGG-AAA-CGGGA-AGGGCTAC-CCCGTGCGATA
CGCACGAG-GCTGCCGCCACCCC-TCGATGGCCCCGGTTTCCCAACA---------------------------------
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>chr5A_33
--------------------------------GAGCGTGCAGCGGGCACGGGAAC--GGCCAGCAGGGCCATGGCGACGC
CGTCGATGGTTTGGCACGGCGTCATCTGGACGTCGGCCTCGGGATGCAGGTCT--TC-------------------ATCG
CGTTCATCCGGAACC-CAACGACGCATGGCACGTCTAGTGCTTTTGCGGCGGTACCGTGATTATCTG-GATCACGATCTG
T-ACCGACTCCCGTATAGTGCAGTCAACAAGTCCCTCTTGATTTTAAGAATATCGACATTGGTCGGCGACGTATTCGTCA
GCAT-GTTCTTGGGAGGAAAATCCATACCATATGTAGATTGAATCCG-AAA-AATAAACTAATCGTAAAAACGGAATCGT
AGTAACGAGAGGAATTCATTTTTGCAAA-A-GTGAAGATCGGATCTTATACCTCCGCGGAATCGACGAAAGCCTGCGTGA
TGCAGGCTTGACGCAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACGTGTTCCGCAACTCCACCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGAGCGTGCGTCGTAGACGAAGTAGTCAAACAC-----------GCGAAAGT-AAA-TG
ACACAGAGAAGTATGGAGCAGACCAGCTTTATTAATCAATGATCAAGTGTTACAATGATTGCTCCTCCTCGCTTTATATA
GGG-----------------------------------------------------------------------------
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>chr2D_39
--------------------------------------GCAGAGGGCTACGGCGCGTGGCCAGCAGGGCCAAGGCGACGC
CGTTGATGGCGTGGTACGGCGTCATCTGGACGCCGGCCTCGGGATGCGGATCT--TC-------------------CTCG
TGTTCGTCCGGAACTCCGACGGCGCATTGCACATCTGGTGCTTTTGCGGCGGTACCGCGACCATCTG-GGTCGCGATCTG
T-ACCGAC-TCCCTATAGTGCAGTCAACAATTCCCTCGTAGTCC-AAGAACATCGACATTGGTCGGCGACGTGTTCGTCC
GCTCGGTTCTTGGGAGGAAAATCCGCATCATAGGTAGATCAAATCCG--AATAATAATCTAATCGCAAAAACGGAATCGT
AGTAACGAGAGGAATCCATTTTTGCAAA-AAGTGGGGATCGGATCTTATACCTCCGCGGGATCGACGAAAGCCTGCG---
--------TGATGCAGGTTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACGTGTTCCGCAACTCCGCCGGCGAGT
CCAGTCCGAGGTTGCGGAGCGAGGGCGAGCGTCGTAGACGAAGTAGTCGAAGTAGTCG-AACGCGCGAAAAGTAAAA-TG
ACACAGAGA--GATGGAGGAGACCAGCTATATTAATCAATGATCAGATATTACAATGATGGCTCCTCGTTGCATTATATA
GGGACTA-GG-GGTCAAGGGATAAGTATCCACTTAACGTAAAGA-GGGG-AAA-CGGGA-GGGGCTAT-CCCTAGCGATG
CGTACGCTAGCCGCCGCCACCATCGTGGTGGCCCCGGTTTCCCAACA---------------------------------
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>chr4D_89
TTGG----------------------------------------------------------------------------
---------------ACGGCGTCATCTGGACGTCGGCGACGGGATCTCAAAAACATC-------------------GTCG
TGTTCATCGGGAACATCGACGGCGCGTGGCACAGCGAGTGCG-TTGCGGCGGTACCGTGATCATCTG-GCTCACGATCTG
T-ACCGACTCCCGTATAGTGTAGTCAACAAGTCTCTCATGATCC-AAAAACATCGACATTGGTCGGCGACGTATTCGTCC
GCTCGGTTTTTGGGAGAGAAATCCACACCATAGGTAGATTT-ATCCG-AAA-AATAATCTAATCGCAAAAACGGAATCGT
AGTAACGAGAGGAATCCATTTTTGCAAA-A-GTGGGGATCGGATCTTATACCTCCGCGGGATCGACGAAAGCCTGCG---
--------TGATGCAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACATGTTGCGCAACTCCGCCGACGAGT
CCGGTCCGAGGTTGCGGAGCGAGGGCGAGCGTCGTAGACGAAGTAGTCGAAGTAGTCG-AACACGCGAAA-GTAGATGAC
ACGGAGAGA--TATGAAGGAGATCAGCTTTATTAATCAATGATCAGGGATTACAATGATGGTTCCTCGTTGCTTTATATA
GGGGGTAAAG-GGTTAAGGGATAAATACCCACTTAACGTAAAGT-GGGG-AAA-CGGGA-GGGGCTAG-CCCGTGCGATA
CGCACG----CCGCCGCCACCCC--TGGTGGCCCCGGTTTCCCAACA---------------------------------
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>chr3D_115
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-------------------------------------CTCGGGATGGCAAGATCGTGCGTCTTCGGGACGTCACGACGCG
TGTACGTCGGGTACAAC----------------------------GCGGCGGTACCATGATCATCTG-GATCACGATCTG
T-ACCGACTCCCGTATAGTGTAGTCAACAAGTCTCTCGTGATCC-AAAAACATCGATATTGGTCGGCGACGTGTTCGTCC
GCTCGGTTTTTGGGAGAGAAATCCACACCATAGGTAGATGT-ATCCGAAAA-AATAATCTAATCGCAAAAACGGAATCGT
AGTAACGAGAGGAATCCATTTTTGCATAGA-GTGGGGATCGGATCTTATACCTCCGCGGGATCGACGAAAGCCTGCG---
--------TGATGCAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACGTGTTCCGCAACTCCGCCAGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGAGCGAGCGTCGTAGACGAAGTAGACGAAGTAGTCG-AAGTATGCGAAAGTAAAAGTG
ACACAGGGA--GATAGAGGAGACCAGCTTTATTAATCAATGATCAGGTGTTACAATGATGGCTCCTCGTTGCTTTATATA
GGGGGTA-GGTGGTCAAGGGATAAGTACCCACTTAACGTAAAGT-GGGG-GAA-CGGGA-GGGGCTAGCCCCGTGCGATA
CGCACGAG-GCCGCCGCCACA-C-TCGGTCGCCCCGGTTTCCCAACA---------------------------------
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>chr2D_115
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-------------------------------------CTCGGGATGGCAAGATCGTGCGTCTTCGGGACGTCACGACGCG
TGTACGTCGGGTACAAC----------------------------GCGGCGGTACCGTGATCATCTG-GATCACGATCTG
T-ACCGACTCCCGTATAGTGTAGTCAACAAGTCTCTCGTGATCC-AAAAACATCGACATTGGTCGGCGACGTGTTCGTCC
GCTCGGTTTTTGGGAGAGAAATCCACACCATAGGTAGATGT-ATCCGAAAA-AATAATCTAATCGCAAAAACGGAATCGT
AGCAACGAGAGGAATCCATTTTTGCAAAGA-GTGGGGATCGGATCTTATACCTCCGCGGGATCGATGAAAGCCTGCG---
--------TGATGAAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACGTGTTCCGCAACTCCGCCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGAGCGAGCGTCGTAGACGAAGTAGTCGAAGTAATCG-AAATATGCGAAAGTAAAAGTG
ACACAGGGA--GATAGAGGAGACCAGTTTTATTAATCAATGATCAGGTGTTACAATGATGGCTCCTCGTTGATTTATATA
GGGGGTA-GGTGGTCAAGAGATAAGTACCCACTTAACATAAAGT-GGGGAAAA-CGGGA-GGGGCTAGCCCCGTGCGATA
CGCACGAG-GCCGCCGCCACA-C-TCGGTCGCCCCGGTTTCCCAACA---------------------------------
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>chr1D_175
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---------------------------------------------GCGGCGGTACCGTGATCATCTG-GATCACGATCTG
T-ACCGACTCCCGTATAGTGTAGTCAACAAGTCTCTCGTGATCC-AAAAACATCGACATTGGTCGGCGACGTATTCGTCC
GCTCAGTTTTTGAGAGAGAAATCCACACCATAGGTTGATTT-ATCC-AAAA-AATAAACTAATCACAAAAACGGAATCGC
TGGGCTGAGATGAATCCATTTTTGCAAAGA-GTGGGGATCGGATCTTATACCTCCGTGGGATCGACGAAAGC--------
-------TTGATGCAGGCTTGACGGAGAGTTGGTGGAACGAAGCGTGCTGATAACGTGTTCCGCAACTCCGCCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGGGCGAGCGTCGTAGACAAAGTAGTCGAAGTAGTCG-AACACGCGAAG-GTAAATGAC
ACAAAGAGA--TATGGAGGAGACCAGCTTTATTAATCAATGATCAGAGATTACAATGATGGCTACTCGTTGCTTTATATA
GGGACTA-GG-GATTAAGGGATAAGTACC-ACTTAACTTAGAGA--GGG-GAAACGGGA-AGGGCTAT-CCCTAGCGATT
CGTGCGCTAGCCGCCGCCACCATCGTGGTGGCACCGGTTTCCCAACACGAA-----------------------------
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>chr3A_175
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---------------------------------------------GCGGCGGTACCGTAACCATCTG-GGTCACGTTTTG
T-ACCGAC-TCCCTATAGTGCAGTCAACAAATCTCTCTTGATCC-AAGAACATCGACATTGGTCGGCGACGTATTCGTCC
GCTCGGTTCTTGGGAGAGAAATCCACACCATAGGTAGATTT-ATCCGAAAA-AATAAACTAATCGCAAAAACGGAATCGC
GGTAACGAGAGGAATCCATTTTTGCAAAAA-G-GGGGATCGGATCTTATACCTCCGCAGGATCGACGAAAGCCTGCG---
--------TGACGCAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACGTGTTCCGCAACTCCACCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGAGCGAGCGTCGTAGACGAAGTAGTCGAAGTAGTCG-AACACGCGAAA-GTAAATGAC
ACAGAGAGA--TACGGAGGAGACCAGCTTTATTAATCAATGATCAGAGATTACAATGATAGCTCCTCGTTGCTTTATATA
AGGACTAAGG-GGTCAAGAGATAAATACCCACTTAACGTAAAGT-GGGG-GAAACGGGAGGGGGCTAG-CCCGTGCGATA
CGCACGAG-GCCGCCGCCACCCCTTCGGTGGCCCCGGTTTCCCAACAG--------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>chr5D_175
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GCGGCGGTACCGTGATCATCTG-GGTCGCGATCTG
T-GCCGAC-TCCCTATAGTGCAGTCAACAAGTCCCTCGTGGTCC-AAGAACATCGACATTGGTCGGCGACATGTTCGTCC
GCTCGGTTCTTGGGAGGAAAATCTGCACCATAGGTAGATCAAATCC-GAAT-AATAATCTAATCGCAAAAACGGAATCGT
AGTAACGAGAGGAATCCATTTTTGCAAAAA-GTGGGGATCGGATCTTATACCTCCGCGGGATCGACGAAAGCCTGCG---
--------TGATGCAGGCTTGACGGAGAGTTGATGGAGCGAAGCGTGCTGATAACGTGTTCCGCAACTCCGCCGGCGAGT
CCGGTCCGAGGTTGCGGAGCGAGAGCGAGCGTCGTAGACGAAGTAGTCGATGTAGTCG-AAGTATGCGAAAGTAAAA-TG
ACACAGAGA--GATGGAGGAGACCAGCTTTATTAATCAATGATCAAGGATTACAATGATAGCTCCTCGTTGCTTTATATA
GGGGGTA-GG-GGTCAAGGGATAAGTACCCACTTAACGTAAACT-GGGG-GAAACGGGA-GGGGCTAG-CCCGTGCGATA
CGCACGAG-GCCGCCGCCACA-C-TCGGTCGCCCCGGTTTCCCAACAG--------------------------------
--------------------------------------------------------------------------------
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>chr1A_1104
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--------------------------------------------------CCGCCACCACCACCGCCACCGCCACCGCCA
GCTCTCCTCGTCCTCTGCTGACGCCGTGGCCGCAGCTGAGGTTCTGGGGACGCTCACCACCGCCCCTTCACCTGACGCGT
CGCGCGACCTCGATTGCCTGCTCCGCCGCCTAGGCGACCGCGGTCTGGCATCCGCCCTCTCATCCCTTCCTTCCCCCCTC
CCAGCGGCGTCCGCCCTCCGCCTCCTTCACCACCTTGTTTCCAACGATCCCTCCTCCTCCAGCCACGGCCACGCCCACGC
CGACGACCTCCTGCCCCCCCGCGTCTCCGCGCTCCTCCTCCCCTCCCTCGCGGCCGATCGCTCCACACTCCCCTCCGCTC
GCCGCCTAATCAGGCGCCTCCTACATCACCACCCCCTCCACACTGCCGCAGCGGCTGTGGCCGACGCCTCCTCCATCCCC
TCATCGGATTTACTCCTCAGCACCTTCCTCAACTCCTCCGCACGTGGTTCCCTCAGGGGGTGCCACGGACGCCTTCCATG
TGCTCTCTTCCCGGGGCGCTTCGCCCTCCGTTAAGATCTGCAATATGCTCCTTGAAGCTCTTGTGCGTGCTGGCCAGCTT
GACGCCGCTTGCAAGGTGTTTGCTGAAATGCGTGGTCGTCAGAACGTCACTCCGAATGCATACTCATATACCTCTATGAT
CAAGGCCCTTTGCAGGGCTGGAAAGGTGGACGGCGGTCTTAAGATGCTTGCAGAGTTAGTCCATGCTGGGCTGCAGCAAT
GTGCTGGTGTAGTGCCATACAATCTGCTGATGGATGGACTTTGCAAGAGTGGAAGAGTAGACGAGGCTTTTCGGCTGAAG
GAGAGGATGGAAGAGAGCAAGGTGACTCCGAGCGTGGTCACCTTTGGCATTCTGATCAATGGTCTTGCAAGAAGTCAGCG
CTTTGGGGAGGTTGGTGCAGTGTTGCAGGACATGGCT-GGTTAGGAATCACCCCAAATGAGATCATTTACAATGAGCTTA
TTGATTGCCATTGTCGGAGGGGGCATTTCTCAGAAGCAATCAGGTTGTTTGATGAAATGCTCTCAAAGGAGATGAAGTCA
ACAGCAGTGACTTACAACTTGATTGCTAGAGCTCTATGCAAGGAAGGGGAGATGGAGCGTGCTGAGCAGATATTGGAGGA
GATGTTATCGGCTGGGATGGTAGTTCATTTTGGTTTGTTTAATTCAGTGGTTGCAGGGCTTCTCCAAAGGACTGGAAGTT
TGAAGTCTGTGGTAAGGCTTATAAGCGAAATGATTATAAGAGGTATGCGACCAAATGATGCTCTCATGACAGCTTGTGTG
AAGCAGCTTTGCAAGGGCGAAAAACACCAAGAAGCAGTTGGAATTTGGTTGAAGTTGTTGAAGGAAGGTTTGTCTGTCAA
TATTGCAACTTCTAATGCATTGATTCATGGGCTTTGTGAGGGGAAGGACATGGAAGGAGCTACTGAGGTTCTAAGGACCA
TGGTTAATAAGGGGCTTGAACTGGATAGCATCACTTATAACATAATGATACTAGGTTGCTGCAAAGGCAATAAAATAGAG
GAAGCAATTAAACTCCGTGATGACATGATCAGAAGAGGGTTGAAGCCTAATATTTTCACGTTTAATACAATACTACATGC
TTATTGCATTTTGGATAAAATGGAAGAGGCCATTCACCTGCTGGATCAGATGAAAATTGAGGGACTTCGGCCAGATATAG
TGTCATATGGCACTATAATAAATGGATATTGTAAAATAAAGGATATTCATAAAGCAAATGAATATTTGACTGAACTGATG
ACCTGTGGATTAGAACCAAATGTAGTAATCTATAATGCACTTATTGGTGGTTATGGTAGAGTTGGTAACATTTCTGGTGC
AATTGATGTCCTTAACACCATGAAGTCTGCTGGCATAAGACCAACTAATGTAACTTACTGCAGTCTTATGCACTGGATGT
TCCATGCTTATCTTGTTGACGAGGCGAAGACCATGTTTGAACAAAGCAGAGAAAACAGCATTGAGGTGGGAGTAATTGGC
TACACAATTATGATACATGGTTTTTGCAAAATAGGAAAAATGGATGAAGCTATGAATTACTTGGAGCAAATGCGGTCCAG
GGGTATACCTCCAAATAAGTTTACTTATACCACTCTGATGTATGCCTATTGTAAATCTGGTAATAATGAAGAAGCCTCCA
AGCTTTTTGATGAGATGCTGAGCTCAGGAATTGTTCCTGACAACGTTACTTACAATACACTAGTTACAGGGTTTTCTCAA
GTGGATCCATTGGACAAGGCTACAGAACTGCCTGCTGAAATATCAAGTGTTTTGACACAGAATGATTGTTTGTACAATGC
ATTAGTTAATAGGATAACCAGACCTTGGTGCCAGAAAGAAGCTACTTCCAGTGAATGATGTTTGATTAAGGAACCATAAG
GAAGACTGTTTTCTGAACAGACCCATCCAAGCATGAAAGGGAACTAGAGAGACCACAGAGGCCCTCGCCTTGCTATTGGC
TAGATAGCTTTCTCATCTAGCAGGAACATCAACCGAGTCCATTCATCTCTTATCTTGGACAGCTATCCAACAGCAGCAGG
TTGCGCTTAAAGTTTATTTATGGTAATGTATAGTTGCTCATCAAGCTGCTACCTTGTGGCATGTGGGGGGTGCCCAACAG
AAGCACCAGATTGCCTTGAAGGTTCATAATTGGTAAAATATACACTTTTACCCAATTAATTAGTTTTTTATTTGCCTGCC
ATAGTTACATGGAGTTCCTTTTATAAATCGACAGTGACAGATAGTACTGTGTACATGATTTGTAACAAATTTTGTGCTGT
GCACTGCATCATGATTGTTTATTCATGCTAATGTGTAGCTGAAAACACTCTACCTATTTTTTTTTCTTGGTATAGCACCC
AATAGTATTCTGAAATTAGAACATGTGAAGCAAATAATCTTGTTCTCAAGCAGGACATCTTTTATGCCTTCCCTTGACAA
TGGAAAAATAATAACACGTTATGCATAAGCATTGACTTGTACCTGCTTACACAGCCTAACTTTGGTTGACAATGACAACA
CCTTGATTGCCTCTCAGTGGATAGATGATGACTGAAAGGAATTACCTGCTTCAAGTTACAGAAGGTAATGATTTCTTCTC
TTGTACTCATAGGACTATCATTGAACACATTAATTCTTCCCCATGTTCATATGAATCAGCATTAGGTTTGTAGTCCCTTT
TCTGAGATGGACACGAGTGAGTTTGAAATTGAAAGTTTGAACTAAAAGAAATAAACAACATGCGTACAAATTATATTAAT
TTCTGTAATATTTTGTAAATGTACGTTTTTGTAAGAAATTTAACCTCCAAACTTAGGGCAAAAATATGTCCGTTTGTGCT
TCTGCACAAAAATATCAAGTTCATTTCGTTTCTTTTG---TACATCACTGCAAAATCTGTACTTCTCTACTATATTTAAA
AAGAACGCAAGGTTCCTTTTCCTGCCAACGGACCGCGTTCTGCTCCAAAGCTTCATCCGCCCGTCTGTTTTT-TTATTGG
TTCATCCCCTCCCACCCACGCTGCCGTGAAAAAAGACAGAAGAAAAAATACACGCCTCATC-------------CAACTC
TCTAGGGTTCCCCGCCGCTGCTCCTTCTCTCCAACTTCAATCGCCACACCGATCCCTGACACGAGGAGCGTGACGCCATT
CGGGGAGATTTGCACACCTGTCTCCATTGGAACGCTC
>SNPs
-SS--SSSS-----------S--SS-SS-SSS-------------------S----------------------------
---------S---------------------------------S------------------S-----------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S-S-
-------------------------------------------S------------------------------------
--------------------------------------------------------S-S---------------------
-------S-----------------S-----------------------------------------S------------
--------------------------------S----------S----------S-------------------------
-------------S----------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
-----------------------------------------------------------S---S----------------
-------------------S------------------------------------------------------------
--S----------------------------------------------------------------------S-----S
-S-----------S------------------------------------------------------------------
------------S--------------------------------------------------------------SS---
--------------------------------------------S-----------------------------------
--------------------------SS-----------------------------------SS--S------------
----------------------------------S---------------------------------------------
--------------------------------S---------------------------S-------------------
--------------------------------------------------------------------------S-----
-----------------------------------------S--------------------------------------
-------------------------------------S------------------------------------------
------------------S-------------------------------------------S-----------------
-------------------------S----------------------------------------S-------------
------S---S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------SS---------------------------------S--------S-------S--------
----------------------S------------S----------S---------------------------------
--------------------------------------------------------------------S----------S
-----------------------------------------S--------------------------------------
--------------S-----------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------S-----------------------
------------------S---------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----S-----------------------------------------------------------S-S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
-S-----------------------S------------------------------------------------------
--------------------------------------------------S---------------------------S-
-------------------------------------S------------------------------------------
--------------------------------------------------------S-----------------------
---------------S-------------------------------------S-----------S-------------S
--------------------------------------------SS------------------S---S-----------
--------------------------------------------------------------------------------
------S-S--------S--------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S---------SSS----------------------------------------
---------------------------------------------------------S--------------S-------
--------------S----------S----------------------S---S--------SSSSSSSSSSSSS------
-------------------------------------------------------------S------------S-----
-------------------------------------
>forward_1056
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CCAA
TCCCCACCCTCCATTC----------------------------------------------------------------
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>reverse_2179
--------------------------------------------------------------------------------
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------------------AGGGGCATTTCTCAGAAGCA------------------------------------------
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>forward_1745
--------------------------------------------------------------------------------
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---------------------------------------------TGCTCCTTGAAGCTCTTGCA---------------
--------------------------------------------------------------------------------
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>reverse_3345
--------------------------------------------------------------------------------
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----------------------------------------------------------------GACGAAGAAGCCTCCA
AGCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------
>forward_2118
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------AGTGTTGCAGGACATGGCTG------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>reverse_3762
--------------------------------------------------------------------------------
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-CGCGCTTAAAGTTTATTTATGGTATTG----------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>forward_3666
--------------------------------------------------------------------------------
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----------------------------------------------GAGAGACCACAGAGGCCCTT--------------
--------------------------------------------------------------------------------
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>reverse_4862
--------------------------------------------------------------------------------
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-------------------------------------------------------------TGAGGAGCGTGACCCCATT
C------------------------------------
