>input_sequence_27074
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-------------------------------------------------------------ATGGACATATCTGAGGAGC
AACAACAAGATTTTGGTGTGCTACTAAAGCAGGGGGCTGAAGGAGTGAGTCAAAACTCCAGACTTGTATAGTTTCTATTT
CTCCCTTACCTGTTTTCAATAGTTTGTTTGCTTGTTTGCAGAGGGTATTTGTTTCGACATTTGTTGGACGAAAATGCGTA
ATCAAAGAGCGTTTTTCAAAGAAGTATCGACACCCAGTGCTGGACTCAAAGTTGACTCTAAAACGCTTAAATGCTGTCAG
TCTCCTTAACCTATGTGCTTTTCTTTTGAGATAATCTACCCCTTTTCCAGTTTTCTTTACGTTAAGATTAATTGTACAAA
CATTCTTTCAAAGATGTATAGTATTGCCGTATTGGTACCAAATTTCTTTCTTATTTTGTTTATCAAGCAGCAAAGGGTTT
CATATGCTTTTAAGGATAGAATTATAACTCTTGTCCAGTTTCATATTGAATGAAGAAGATAGAACCATAGAGTGATCTGT
AGTCACGTGTTAGGTTGTAACATGTACAAATGATAGTATTAAAACTCGGCTTACCTCAGTCTCCCTTCCATCTGTAGGAA
GCTAGATGCATGACAAAAGCAAGACGGCTTGGTGTTCCTACACCAGTTCTGTATGCTGTGGACCCTCTTCCACATACATT
AACCTTTGAGTATGTGGATGGCTTGTGCGTCAAAGATATTCTTCTTGGATTTGGGTCAAATGGGATAAATGAAGAACGTC
TTAATGATATTGCCACACAGATAGGGAATGCAGTTGGCAAACTACACGATGGAGGTCTTGTTCATGGTGATTTGACAACT
TCAAATATGATGATCAAGAACAGCACCAATCAACTGGTGCGCACAATATTCTTTGTTTTCCCCCTGTTTTAATTCATCTA
TC-ACGGTGTTAACTT-AAAAGT------CTGGCTATCAATTTACCATGTTATATTTTCATTTTGCAGGTTCTTATTGAT
TTTGGTCTGAGCTTTACATCAACTATTCCAGAGGACAAGGCAGTGGACCTCTATGTCCTTGAGAGAGCTTTAATTTCCAT
GCATTCTTCATGTGGGGATGTGGTAAGCGAATTGTGTAAATCATGT--ACTAGAATATTTTGTGTCTTTGTTTACT--AA
GTC-ATGACTCTTACCATATCAATGATATCCTAAATGTGTCCAAAAACAATAAATTACTTTTTTGTGGAGCAAAAGGTAT
ATAGGGG-GCCATTTTTACAAGTAGCCCCTCCATATATAATTGTATATGGTGCAGCCCACCTTTTGGATTTCTTTTT---
-GAAATCACCATTCATGCTATTTATTCAAAGAGTTCAGGGATCTCACCAG-AAACAGTACCCAGAATACAGTCTGGTGGA
GCATGAGCCCACACCTTTCACAAATCATTATTCACTCCCTCTCTTGCTAAAGCATGAGC-AGTACCATTAGCCGGTCGCC
GAACCCAGCTAACTTTGAACTCCATTCGAGTGCACGGCAACTCTTTCACCTCCTGAACGATTGGCCCAGTGGCTGACAAG
TTCTTCATAGGATCATTTAGCATACATACCACAGCCTTGCAATCAATGTCGGCATGAAGTTTCAGAATGTTCATCTCCAC
TGCAAGCTTGACAGCACGCCGGCATGTGAGAAGTTCA-----CTCGGGGTTGGAAACCGAAGGGAAGACATGGCAGGCAC
CCCCTCTGAATGTGCCGTTGTGATTCCTGAAGACCATGCCATCTGCCCCTTTGTCCCCAGCTTTTGACATTGCACCATCC
ACATCAGCTTTCGTCCACCCGATCTCAGGTGGTCGCCATCTTTCCGCCGTCGCCTGATGCATTTTCCTCTCTTTGTTTCC
ATGGACCGACTTCCAGTCCTCCGTATAGGCCATCACCGAACCTGCTATCGCATGTGCATCTGCGATCTTCTTGCCTTCAC
GCATATCATTCCTTGCTAGCTAGAGTGCATAAACATTCTGCACCATTGTGGCTCTTTCCTCTTCTGAAGCGTCAGCAAAC
CACGATAGCAGCCATCTAGATAGTATGCTCTGAGAGCCTGCCGAAACCGGCGGGATCGCCACCAGAGCTCCCAATTCCGA
GCAC--GAACTTCCAGAACAGTGCCGAATGAGGACTTCGGAGCGCATGAACTTCCAGTATGGCGTTTCCTCTGGAC----
---------------------------------ATGAAGTAGCTCGGCTCCAACAGTGAGCCCATTGCGCATTAGTCGCC
AAGTATGAATTTTTGTTTTATTCGGAGTCCCCGTGTCCCAAAGGGCAAGCCACTCCTTGTGGTTGGCGACTGTCGAGGAA
GATTCCGGCTGTCCAGTCTTAACACGGTTCTTTGCTATGCGCAGGTGGTAGGCTGACTTGACAGTA--------------
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---------------------AGGTTAAATTAATTTGTCATAATTGTTATTCTGCGATTGTTAGTGCATCTACTTCATTT
ATCCTCGGGAGATATTTATGTGGTGTGTCTGTGTGTGACTTCCTAGCTGGTTTTCACACCCTGCCTTAGAAGAATGGTAT
TCCAAAATAACATGGGTTTTGACAAATCAGAATATATTAGCAGTTAGTCTGATGCCATGGGACTTTCGGTGCTCGACATG
GACTGACATGGACTGCCATTATTACTGTTCCAGTTTTGTGGATAACAGTCACCCATTTTTGCTTTGAATTAGATGGAGAA
GATCCTCGCTGCGTACCGAAAAGCATCAAGGCAGTGGTGTGCCACTACGAACAAGCTAGCTCAAGGTATGATACATGGTC
ATGGCCCTTCTGCAAAGTATGATGTCCATTTGCTGTCT--TGTGTTAACCTAATCCC--TTGGCTTGTTTATGTTCTTCG
CATGGATTTTTCAGTCAGGCAGCGGGGCAGAAAGCGAACAATGGTTGGGTAA----------------------------
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>chr3D_1_TraesCS3D01G380300
AGAGTGAAAGAGGCATACAAAATCCTCTATTTGATGAGGGAAGGAGAAGAAGGGTGCTCACCTGACTGGGTTAGCTACTA
TCTTGTAGTTAAGGTCCTCTATTTGACCGATAGAATTATCAGAGGGAAAAGGCTTGTAGAAGATATGCTTGAAAGTGGGG
TGCTTCCGACAGCAAAGTTTTTCCATGGCCTCATCGGCATCCTTTGTGGAACAGAGAAAGTTGATCATGCTCTTGACATG
TTCAAAATTATGAAGAGTTGTGGGTTAGTGGACACTCATACATATGATCTGCTTATAGAAAAGCTTTCTAGGAGTGGTAG
ATTCGAGGTTGCAAAGGAGTTATGGGATGATGCTACTAAGAATGGCATTGTGTTAGGGTGCTCATCGGATCTGTTGGATC
CCTTGAAGACAGAAGTATTCAGACCAGTTCGTCCTGCACAAAGACAGACCTCTCAGAACTGTAAGAGCTTGATCCCAACT
AAGAAGGGTACTGCTGCTGGAGCAATAAATAAGTAGGATACTCTGTCCCAGGACAAAGCAGGGAGTCTAGGTACTATGGG
ACTAAGTCAACTTATCCGAGCATATTTGCTTCTAACCCTTTTGGTTTGGAACTATGTGATGATGA--------CCCTTGT
TTTAGTTGTTACTTAGTAAACTCAAGTAATCAGTTGTCAAACCTTTCCTGGAACCTACATGCAATTACCCTATTTTTATG
TGGAGTCCGT----TCCATGACTACTGTTTTAATAAAGTCAAGTGAACTTACTATAATTCAGTGAAGCTGTTACTTTTGA
TTTTAGTATTTTATTGCCATCTGC-CCATTATAGTACTCTAGTTTGCAAAAATGACTGGCACTCTGGCAGTATGGTGTAG
CAACTCTCC-------TCCTTATCTCGAAGTTCTCTATCATAAATTATATTGTTATGGTTAGTTTTTATCTGTTTGCTGA
CC-TTCCCCTTTTTCTTTATTGTCACCGTTACAGTTCTGTTTTGAGTGCACATTGAACTTTATGGACATATCTGAGGAGC
AACAACAAGATTTTGGTGTGCTACTAAAGCAGGGGGCTGAAGGAGTGAGTCAAAACTCCAGACTTGTATAGTTTCTATTT
CTCCCTTACCTGTTTTCAATAGTTTGTTTGCTTGTTTGCAGAGGGTATTTGTTTCGACATTTGTTGGACGAAAATGCGTA
ATCAAAGAGCGTTTTTCAAAGAAGTATCGACACCCAGTGCTGGACTCAAAGTTGACTCTAAAACGCTTAAATGCTGTCAG
TCTCCTTAACCTATGTGCTTTTCTTTTGAGATAATCTACCCCTTTTCCAGTTTTCTTTACGTTAAGATTAATTGTACAAA
CATTCTTTCAAAGATGTATAGTATTGCCGTATTGGTACCAAATTTCTTTCTTATTTTGTTTATCAAGCAGCAAAGGGTTT
CATATGCTTTTAAGGATAGAATTATAACTCTTGTCCAGTTTCATATTGAATGAAGAAGATAGAACCATAGAGTGATCTGT
AGTCACGTGTTAGGTTGTAACATGTACAAATGATAGTATTAAAACTCGGCTTACCTCAGTCTCCCTTCCATCTGTAGGAA
GCTAGATGCATGACAAAAGCAAGACGGCTTGGTGTTCCTACACCAGTTCTGTATGCTGTGGACCCTCTTCCACATACATT
AACCTTTGAGTATGTGGATGGCTTGTGCGTCAAAGATATTCTTCTTGGATTTGGGTCAAATGGGATAAATGAAGAACGTC
TTAATGATATTGCCACACAGATAGGGAATGCAGTTGGCAAACTACACGATGGAGGTCTTGTTCATGGTGATTTGACAACT
TCAAATATGATGATCAAGAACAGCACCAATCAACTGGTGCGCACAATATTCTTTGTTTTCCCCCTGTTTTAATTCATCTA
TC-ACGGTGTTAACTT-AAAAGT------CTGGCTATCAATTTACCATGTTATATTTTCATTTTGCAGGTTCTTATTGAT
TTTGGTCTGAGCTTTACATCAACTATTCCAGAGGACAAGGCAGTGGACCTCTATGTCCTTGAGAGAGCTTTAATTTCCAT
GCATTCTTCATGTGGGGATGTGGTAAGCGAATTGTGTAAATCATGT--ACTAGAATATTTTGTGTCTTTGTTTACT--AA
GTC-ATGACTCTTACCATATCAATGATATCCTAAATGTGTCCAAAAACAATAAATTACTTTTTTGTGGAGCAAAAGGTAT
ATAGGGG-GCCATTTTTACAAGTAGCCCCTCCATATATAATTGTATATGGTGCAGCCCACCTTTTGGATTTCTTTTT---
-GAAATCACCATTCATGCTATTTATTCAAAGAGTTCAGGGATCTCACCAG-AAACAGTACCCAGAATACAGTCTGGTGGA
GCATGAGCCCACACCTTTCACAAATCATTATTCACTCCCTCTCTTGCTAAAGCATGAGC-AGTACCATTAGCCGGTCGCC
GAACCCAGCTAACTTTGAACTCCATTCGAGTGCACGGCAACTCTTTCACCTCCTGAACGATTGGCCCAGTGGCTGACAAG
TTCTTCATAGGATCATTTAGCATACATACCACAGCCTTGCAATCAATGTCGGCATGAAGTTTCAGAATGTTCATCTCCAC
TGCAAGCTTGACAGCACGCCGGCATGTGAGAAGTTCA-----CTCGGGGTTGGAAACCGAAGGGAAGACATGGCAGGCAC
CCCCTCTGAATGTGCCGTTGTGATTCCTGAAGACCATGCCATCTGCCCCTTTGTCCCCAGCTTTTGACATTGCACCATCC
ACATCAGCTTTCGTCCACCCGATCTCAGGTGGTCGCCATCTTTCCGCCGTCGCCTGATGCATTTTCCTCTCTTTGTTTCC
ATGGACCGACTTCCAGTCCTCCGTATAGGCCATCACCGAACCTGCTATCGCATGTGCATCTGCGATCTTCTTGCCTTCAC
GCATATCATTCCTTGCTAGCTAGAGTGCATAAACATTCTGCACCATTGTGGCTCTTTCCTCTTCTGAAGCGTCAGCAAAC
CACGATAGCAGCCATCTAGATAGTATGCTCTGAGAGCCTGCCGAAACCGGCGGGATCGCCACCAGAGCTCCCAATTCCGA
GCAC--GAACTTCCAGAACAGTGCCGAATGAGGACTTCGGAGCGCATGAACTTCCAGTATGGCGTTTCCTCTGGAC----
---------------------------------ATGAAGTAGCTCGGCTCCAACAGTGAGCCCATTGCGCATTAGTCGCC
AAGTATGAATTTTTGTTTTATTCGGAGTCCCCGTGTCCCAAAGGGCAAGCCACTCCTTGTGGTTGGCGACTGTCGAGGAA
GATTCCGGCTGTCCAGTCTTAACACGGTTCTTTGCTATGCGCAGGTGGTAGGCTGACTTGACAGTA--------------
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---------------------AGGTTAAATTAATTTGTCATAATTGTTATTCTGCGATTGTTAGTGCATCTACTTCATTT
ATCCTCGGGAGATATTTATGTGGTGTGTCTGTGTGTGACTTCCTAGCTGGTTTTCACACCCTGCCTTAGAAGAATGGTAT
TCCAAAATAACATGGGTTTTGACAAATCAGAATATATTAGCAGTTAGTCTGATGCCATGGGACTTTCGGTGCTCGACATG
GACTGACATGGACTGCCATTATTACTGTTCCAGTTTTGTGGATAACAGTCACCCATTTTTGCTTTGAATTAGATGGAGAA
GATCCTCGCTGCGTACCGAAAAGCATCAAGGCAGTGGTGTGCCACTACGAACAAGCTAGCTCAAGGTATGATACATGGTC
ATGGCCCTTCTGCAAAGTATGATGTCCATTTGCTGTCT--TGTGTTAACCTAATCCC--TTGGCTTGTTTATGTTCTTCG
CATGGATTTTTCAGTCAGGCAGCGGGGCAGAAAGCGAACAATGGTTGGGTAAAACTTGACCCGCAGTTGCTGAATGCTAC
GAATTGAACTTGCATCACCATCCATTGTGTGTGTTA---------TAGC------------GGTTCAGCGGAATTGGCTC
TTGCAGAATTGAAATGGA--------TGTCAAGTGAATCATTTGTAACACTGCTTGTTGTACTTCCGTTAGGAATCATAT
ATCTCCCAACTCTTTTAACTTGTGAGTTTTGGATGATCGTTGTGTATCTTAGTGAACTGATACATTTACTTTGTTGCGGT
GCATCTGG-TGAAATGTGAATTGATGTAATTTATTGAAATTACAACCATGTGTGTTCTCCGCATTGGCAGAAGTTTGAAC
GAAACATAAACTCTGTCGCACCAGTCTTATACTGCCAAATCACTTTGCGCCGAGCAGCAGATTGAATCATAGTGATTTTC
CCACGAATTTTCTGCGTCAGAGAAAAATTTCCGCACCACTTCAACTGTTCTATTTTTCTGCGAGGAAATCATCACTTTTT
TTGAGGGACAGGAAATCATCAA------------------------------TTTTTTTGAGACACAGGAAATCATCACT
TGAATT--TTTTTAGGCAAACTCTGAATTGTTATAAAAGCCTATAAAGTTACTCCAACCTGACTGCCACCGGGGCCCGCA
ACTGCTGTTTTTTCTTTCTAGATGGACTAGAAGAGGTTTTTTTTTACGAAACTCTAGACTAGAAGAGGTGGCCGCAACTA
CTGGTGTCCAGAAAGGCCCAATTCAGCAGGGTATT---------GGCCTAACCCGGAGGCCCATGTGAGGTCACGCGGAG
CCAGTTCACCATCCTCGCCTCTCGGCTGGTTCTACGCGACTCGTTTAGTACCACATCGCCTAGCGAGGAGGAAG------
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-------------------------------------CGCAGCGCCGCGAGGCTATAAAGAGCTGGGGTGGCCACCGTTC
CAACTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGC
CATGTGTTCACAACGATATTAAATTTATTTTTTATGGGGAGGGCCC-
>chr3B_1
AGAGTGAAAGAAGCATACAGAATCCTCTATTTGATGAGGGAAGGAGAAGAAGGGTGCTCACCTGACTGGGTTAGCTACTA
TCTTGTAGTTAAGGTCCTCTATTTGACCGATAGAATTATCAGAGGGAAAAGGCTTGTAGAAGATATGCTTGAAAGTGGGG
TGCTTCCGACAGCAAAGTTTTTCCATGGCCTCATTGGCATCCTTTGTGGGACAGAGAAAGTTGATCATGCTCTTGACATG
TTCAGAATTATGAAGAGTTGTGAGTTAGTGGACACTCCTACATATGATCTGCTTATAGAAAAGCTTTCTAGGAACGGTAG
GTTCGAGGTTGCAAAGGAGTTATGGGATGATGCTACTAAGAATGGCATTGTGTTAGGGTGCTCATCGGATCTGTTGGATC
CCTTGAAGACAGAAGTATTCAGACCAGTTCGTCCTGCACAAAGACAGGCCTCTCAGAACTGTAAGAGCTTGATTCGAACT
AAGAAGGGTACTGCTGCTGGAGCAATAAATAAGTAGGATACTCTGTCCCAGGACAAAGCAGGGAGTCTAGGTACTATGGG
ACT-AGTCAACTTATCCGAGCATATTTGCTTCTAATCC-TTTGGTTTGGAACTATGTGATGATGAGTTGATGACCCTTGT
TTCTGTTGTTACTTAATAAACTTAATTAATCAGTTGTCAAATCTTTCCTGAAACTTACATGTAATTACCCTATTTTTATG
TGGAA----T----TCCATGACTACTGTTTTAATAAAGTCAAGTGAACTTACTATAATTCAGTGAAGCTGTTACTTTTGC
TTTTAGTATTTTATTGCCGTTCTGACCATTATAGTA-----GTTTGCAAAAATGACTGGCACTCTGGCAGTATTGTATAG
CAACTG----------TCCTTATGTTGAAGTTCTCTATCATAAAGTATACTGTTATGATTAGTTTTTT--TGTTTGCTGA
CCTTTCCCCCTTTTCTTTATTGTCACTGTTACAGTTCTGTTTTAAGCGCATATCGAATTTTATGGACATATCTCAGGAGC
AACAACAAGATTTTGGTGTGCTACTAAAGCAGGGGGCTGAAGGAGTGAGTCAAAACTCCAGACTTATATAGTTTTAGTTT
CTCCCTTACCTGTTTTCAATAGTTTGTTTGCTTGTTTGCAGAGGGTATTTGTTTCTACATTTGTTGGACGAAAATGCGTA
ATCAAAGAGCGCTTCTCAAAGAAGTATCGACACCCATTGCTGGACTCAAAGCTGACTCTAAAACGCTTAAATGCTGTTAG
TCTCCTTAACCTATGTGCTTTTCTTTTGAGATAATCTACCCCTA--ACAGTTTTCTTTACGTTAAGATTAATTTTACAAA
CATTCTTTCAAAGATGAATAGTATTGA--------TACCAAATTTCTTTCTTATTTTGTTTATCAAGCAGCAAAGAGTTT
CATATGCTTTTCAGGATAGAATTATAACTCTTGTACAGTTTCGTAATGAAAGAGAATGATAGAATCATAGAGTGATCTGT
GTTCACGTGTTAGGTTGTAACATGTACAAATGAT---ATTAAAACTCGGCTTACCTCGGTCTCCCTTCCATTTGTAGGAA
GCTAGATGCATGACGAAAGCAAGGCGGCTTGGTGTTCCTACACCAGTTCTGTATGCTGTGGACCCTCTTCCACATACGTT
AACCTTTGAGTTTGTGGATGGCTTGTGCGTCAAAGATATTCTTCTTGGATTTGGGTCAAATGGGATAAATGAAGAACGTC
TTAATGACATTGCCATACAGATAGGGAATGCAGTTGGCAAACTACACGATGGAGGTCTTGTTCATGGTGATTTGACAACT
TCAAATATGATGATCAAGAACAGCACCAATCAACTGGTATGCACAACATTCTTTGTTTTTCC-CTGTTTTAGTTCATCTA
TTTACTGTGTTAACTT-AAAAGTTTGCATCTGGCTATCAATTTACCACGTTATATTTTCATTTTGCAGGTTCTTATTGAT
TTTGGTCTGAGCTTTACATCAACTATTCCTGAGGACAAGGCAGTGGACCTATATGTTCTTGAGAGAGCCTTGATTTCCAT
GCATTCTTCATGTGGGGATGTGGTAAGCGAATTGTGTAAATCATGTACACTAGGATATTTTGTGTCTTTGTTTACTCCAA
GTC-ATGACTCTTACCACATCAATGATGTCCTAAATGTGTCCAAAAACTATTAATTACTTCTTTGTGGAGCAAAAGGTAT
ATA-GGG-GCTATTTTTGCAAGTAGCTCCTCCATATATAATTGCATATATTTTTGCACAAGGTGTAGCCCTTTTTTG--T
GGAAATCACCATTCGTGCTATTTATTCATAGAGTTCAGGGATCTGAGCAGAAAACAGTACCCAGAATACAGTCTGGTGGA
GCATGAGCCCACACCTTACACAAATCATTATTCACTCCCTCTCTTACTAAAGCATGAGCAAGTACCATTAGCCGATCGCC
GAACCTAGCTAACTTTGAAGTCCATTCGAGTGCGCAGCAACTCTTTCAGCTCCTGATTGATTGGCCCAGCGGCTGACAAG
TTCTTCGTAGGATCATTTAGCATACTTACCACAGCCTTGCAATCCATCTCGACATGAAGTTTCAGAATGTTCATCTCCAT
TGCAAGCTTGACAGCACGCCGGCACGCGAGAAGTTCAGCAACCTCGGGGTTGGAAACCGAAGGGAAGACATGGCAGGCAC
CCCCTTTGAATGCGCCGTCGTGATCCCTGAAGACCATGCCACCGGCCCCTTTGTCCCCAGCTTTTGATATTGCACCATCC
ACATCGGCTTTCATCCACCCGATCTCAGGTGGTCGCCATCTTTCCGCTGTCGCCTGATGCATTTTCCTCTCCTTGTTTCC
ATGGACTGACTTCCAGTCCTCCATATGGGCCATCACCAAACCTGCTATCGCATGTGCATCTGCGATCTTCTTGCCTTCAC
GCGTATCATTCCTTGCTAGCCAGAGTGCATAAACACCCTGCACCATTGTGGCTCTGTCCTCTTCTGAAGTGCCAGCAAAC
CACAATGGCAGCCATCTAGATAGTGCACTCTGAGAGCCTGCCGAAACCGGCAGGATCGCCACCGGAGCTCCCAATTCCGA
GCGCATGAATTTCCAGAACAGTGCTGAGGACATTCCCAAAACCTATG---------GTACAGCGTTTCCTCCCTACCACA
TGCAGCACAAAGCACACCCATCTTGATACGTCGATGAAGGAGCTTGGCTCCAACAGCGAGCTCATTCCGCATTAGTCGCC
AAGTATGAATTTTTGCTTTATTTGGAGTGCCTGTGTCCCAAAGGGCAAGCCACTCCTTGTGGTCGGCGACTATCGAGGAA
GATTCCGGTCATCCAGTCTTCACACGGTTCTTTGCTATGCTCAGGTGGT--GCTGACTTGACAGTAAACTGTCCATTTTT
GAAACACTTCTAATACTATATTCTATAAATAAAAAATATGATGGTAAAAACATGAGAACTGATTATATTGAAACTTGAAA
GTATGTATATATAATGATCGACATACTCCCTCCGTCCCAAAATTATTGTCTTAGATTTGTCTAGATACGGATGTATCTAA
TACTAAAACGTGACTTGATACATCCGTATTTAGACAAATTTAAGACAAGAATTTTGGGACGGAGGGAGTATTAGCATTAC
TTTCAGTCGGTCAACATAGATATACTTGCTCATACTAGTATGCAAGTTGCCTCATGTACACCATGCAGTGTCTGAAATGA
CATACATATTCAGAGACCACAAGGTTAAATTAATTTGTCAAAATTGTTATTCTGCAATTGTTAGTACACCTGCTCCATTT
ATCTTAAGGAAATATTCATGTCT------TGTGTGTGACTTCCTAGCCGGTTTTCACACCCTGCCTTAGAAGAATGGTGT
TCCAAAATAACACGGGGTTTGACAAATCAGAACATATTAGCAGTTAGTCCGATGCCATGGGATTTTCCCTGCTCGG----
------CATGGACTGCCTTTATTACTATTCCAGTTTTGTGGATAACAGCCACCCATTTTTGCTTTGAATTAGATGGAGAA
GATCCTTGCAGCGTACCGAAAAGCTTCAAGGCAGTGGTGCGCCACTACGAACAAGCTAGCTCAAGGTACGATACATGGTC
ATGGCCCTTCTGCAAAGTATGATGTCCATTTGCTGTCT--TGTGTTAACCTAATCCCTTTTGGCCTGTTTCTGTTCTTCG
CATGGATTTTTCAGTCAGGCAGCGGGGCAGAAAACGAACAATGGTTGGGTAAAACTTGACCCGGAGATGCTGAATGCAAC
GAATTGAACCTGCATTACCATCCATTGTCTGTGTTA---------TTAGTTTGCACGTAGTGGTTCAGCGGAATTGGCTC
TTGCAGAATTTAAATGGA--------CGTCAAGTGAATCATTTGTAACACTGCTTGTTGTACTTCCGTTAGGAATCATAT
ATCTCCCAACTCTTT-AACTTGTGAGTTTTGGATGATCGTTGTGTATCTTAGTGAACCGATGCGTTTACTTTGTTGCGGT
GCATCTCG-TGAAATGTGAATTGATGTAATTTATTGAAACTACAACTATGTGTGTTCTCCGCGTTAGCCAAAGTTTGGAC
GAAAGTCAATCTCTGCCGCACCAGTGTTATACTGCCAAATCACTTTGCGCCGAGCAGCAGCTTGAATCATAGTGATTTTC
CCACGAATTTTCTGCGTCAGAGAAAAATTTCCGCACCACTTCAACTGTTTTTTTTTCGGT-GAGGAAATCATCACTTTTT
TTAACGGACAGGAAATCATCATTTTTTCTCAAATACGCAAATCATCGTCACTTTTTTTGGAGACACAGGAAATCATCACT
TGAATTGTTTTTTAGGCAAACTTTGAATTGCTAAAAGCCT-----AAGTTACTCCAACCTGATTGCCACCGGGGCCCACA
ACTACTGTTTTTCCTT------------------------------------TCTAGACGAGAAGAGGTGCCCGGA---A
CTGGTGTCCAGAAAGGCCCAATTCAGCAGGATATT---------TGCCCAACCCGGAGGCCCATGTGAAGTCACGCGTAG
CCAGTTCACCGTCCT-------------------CGCGACTCGTTTAGTACCACATGGCCTAGCGAGGAGGAAG------
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-------------------------------------CGCAGCGCAGCGAGGCTATAAAGAGCTGGGGTGGCCACCTCTA
CAACTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGT
CATGTGCCCACAATGATGTTAAATTTATTTTTTATGGGGAAGGGTCC
>chr3A_1
AGAGTGAAAGAAGCATACAGAATCCTCTATTTGATGAGGGAAGGAGAAGAAGGGTGCTCACCTGACTGGGTTAGCTACTA
TCTTGTAGTTAAGGTCCTCTATTTGACCGATAGAATTATCAGAGGAAAAAGGCTTGTAGAAGATATGCTTGAAAGTGGGG
TGCTTCCGACAGCAAAGTTTTTCCATGACCTCATTGGCATCCTTTGTGGGACAGAGAAAGTTGATCATGCTCTTGACATG
TTCAGAATTATGAAAAGTTGTGAGTTAGCGGACACTCATACATATGATCTGCTTATAGAAAAGCTTTCTAGGAACGGTAG
GTTCGAGGTTGCAAAGGAGTTATGGGATGATGCTACTAAGAATGGCATTGTGTTAGGGTGCTCATCGGATCTGTTGGATC
CCTTGAAGACAGAAGTATTCAGACCAGTTCGTCCTGCACAAAGACAGACCTCTCAGAACTGTAAGAGCTTGATCCGAACT
AAGAAGGGTACTGCTGCTGGAGCAATAAATAAGTAGGATACTCTGTCCCAGGACAAAGCAGGGAGTCTAGGTACTATGGG
ACT-AGTCAACTTATCCGAGCATATTTGCTTCTAAACC-TTTGGTTTGGAACTATGT-ATGATGAGTTGATGACCCTTGT
TTTTGTTGTTACTTAATAAACTCAATTAATCAGTTGTCAAATCTTTCCTGAATCTTACATGTAATTACCCTATTTTTATG
TGGAA----TCCGTTCCATGACTACTGTTTTTAAT-AGTCAAGTGAAC-TACTATAATTCAGTGAAGCTGTTACTTTTGC
TTTTAGTATTTTATTGCCGTTCTG-CCATTATAGTA-----GTTTGCAAAAATGACTGGCACTCTGGCAGTATTGTATAG
CAACTGCCCTCCTTAATCCTTATGTCGAAGTTCTCTATCATAAAGTATACTGTTATGATTAGTTTTTT--TGTTTGCTGA
CCTTTCCCCCTTTTCTTTATTGTCACTGTTACAGTTCTGTTTTAAGCGCACATCGAACTTTATGGACATATCTCAGGAGC
AACAACAAGATTTTGGTGTGCTACTAAAGCAGGGGGCTGAAGGAGTGAGTCAAAACTCTAGACTTATATAGTTTCAGTTT
GTCCCGTACCTGTTTTCAATAGTTTGTTTGCTTGTTTGCAGAGGGTATTTGTTTCTACATTTGTTGGACGAAAATGCGTA
ATCAAAGAGCGCTTTTCAAAGAAGTACCGTCACCCATTGCTGGACTCAAAGCTGACTCTAAAACGCTTAAATGCTGTCAG
TCTCCTTAACCTATGTGCTTTTCTTTTGAGATAATGTACCCCTT--CCAGTTTTCTTTATGTTAAGATTAATTGTACAAA
CATTCTTTCAAAGATGAATAGTATTGA--------TACCAAATTTCTTTCTTATTTTGTTTATCAAGCAGCAAAGAGTTC
CATATGCTTTTAAGGATAGAAGTATAACTCTTGTACAGTTTCATATTGAAAGAGAATGATAGAATCATAGAGTGATCTGT
GTTCACGTGTTAGGTTGTAACATGTACAAATGAT---ATTAAAACTTGCCTTACCTCGGTCTCCCTTCCATCTGTAGGAA
GCTAGATGCATGACAAAAGCGAGGCGGCTTGGTGTTCCTACACCAGTTCTGTATGCTGTGGACCCTCTTCAACATACATT
AACCTTTGAGTATGTGGATGGCTTGTGCGTCAAAGATATTCTTCTTGGATTTGGGTCAAATGGGATAAATGAAGAACGTC
TTAATGACATTGCCACACAGATAGGTAATGCAGTTGGCAAACTACACGATGGAGGTCTTGTCCATGGTGATTTGACAACT
TCAAATATGATGATCAAGAACAGCACCAATCAACTGGTGCGCACAATATTCTTTGTTTTCCC-CTGTTTTAATTCATCTA
TTTACTGTGTTAACTTAAAAAGTTTGCATATGGCTATCAATTTACCACATTATATTTTCATTTTGCAGGTTCTTATTGAT
TTTGGTCTGAGCTTTACATCAACTATTCCCGAGGACAAGGCAGTGGACCTATATGTTCTTGAGAGAGCCTTGATTTCCAT
GCATTCTTCATGTGGGGATGTGGTAAGTGAATTGTGTAAATCATGTACACTAAGATATTTTGTGTCTTTGTTTACTCCCA
AGTTATGACTCTTACCATATCAATGATGTCCTAAATGTGTCCAAAGACTATTAATTACTTTTTTGTGGAGCAAAAGATAT
ATA-GGGGGCCATTTTTGCAAGTAGCCCCTCCATATATAATTGTATATATTTTTGCACAAGGTGTAGCCATTTTTTTTTT
GGAAATCACCATTCATGCTATTTATTCATAGAGTTCAGGGATCTCAGCAGAAAACAGTACCAAGAATACAGTCTGGTAGA
GCATGAGCCCACACCTTACACAAATCATCATTCACTTCCTCTCTTGCTAAATCTTGAGCAATTACCAATAGCCGATCACG
GAACCCAGCTAACTTTGAAGTCCATTCGAGTGCGCAGCAACTCTTTCACCTCCTGAATGATCGGCCCAGCGGCTGACAAG
TTCTTCGTAGGATCATTTAGCATACTTACCACAGCCTTGCAATCCATCTCGACATGAAGTTTCAGAATGTTCATCTCCAT
TGCAAGCTTGACAGCACGCCGGCAGGCGAGAAGTTCAGCAACATCGGGGTTGGAAACCGAAGGGAACACATGGCAGAAAC
CCCCTCTGAATGCACCGTCGTGATCCCTGAAGACCATGCCACCGGCCCCTTTGTCCCCAGTTTTTGATACTACACCATCC
ACATCGGCTTTGATCCACCCCATCTCAGGTGGTCGCCATCTTTCCGTCATCGCCTAATGCATTTTCCTCTCCTTGTTTCC
ATGGACCGACTTCCAGTCCTCCATATGGGCCATCACCAAACCTGCTATCACATGTGCCTCTGCGATCTTCTTGCCTTCAC
GCGTATCATTCCTTGGTAGCCAGAGTGCATAAGCACCCTGCACCATTGTGGCTCTTTCCTCTTCTGAAGCGCCAGCAAAC
CACGATGGCAGCCATCTAGATAGTGCACTCTGAGAGCCTGCTGAAACCGGCAGGATCGCCACCGGAGCTCCCAATTCCGA
GTGCATGAATTTCCAGAACAGTGCTGATGACATTCCCAAAACCTAAG---------GTAGAGCGTTTCCTCCCTACCACA
TACAGCACAAAACACACCCATCTTGATATGTCGATGAAGGAGCTCGGCTCCAACAACGAGTCCATTGCACATTAGTCGCC
AAGTATGATTTTTTGCTTTATTTGGAGTGCCTGTGTCCCAAAGGGCAAGCCACTCCATGTGGTCGGCGACTGTCGAGGAA
GATTCCGGTCGTCCAGTCTTCACACGGTTCTTTGCTATGCTCAGGTGGT--GCTGACTTGACCGTAAACTGTCCATTTTT
GAAACACTTCTAATACTAGTATTCT---ATAAAAAATATGATGGTAAAAACATGAGAACTGATTATAT-------TGAAA
GTATGTATATATAATGATCGTCATATTAGCAC------------------------------------------------
-----------------------------------------------------------------------------TAC
TTTCAGTCGGTCAACGTAGATATACTTGCTCATACTAGTACGCAAATTGCCTCCTGTACACCGTGCAGTGTCCGAAATGA
CATACCTATACAGAGACCACAAGGTTAAATTAATTTGTCAAAATTGTTATTCTGCGATTGTTAGCACACCTACTCCATTT
ATCTTGAGGAAATATTCATGTCT------TGTGTGTGACTTCCTAGCCGTTTTTCACACCCTGCCTTAGAAGAACGGTGT
TCCAAAATAACATGGGGTTTGACAAATCAGAATATATTAGCAGTTAGTCCGGTGCCATGGGATTTTCCGTGCTCGACATG
GACTGCCT----------TTATTACTGTTCCAGTTTTGTGGATAACAGCCACCCATTTT-GCTTTGAATTAGATGGAGAA
GATCCTTGCAGCGTACCGAAAAGCTTCAAGGCAGTGGTGTGCCACTACGAACAAGCTAGCTCAAGGTATTATATGTTGCC
ATGGCCCTTCCGCAAAGTACGATGTCCATTTGCTGCCTCATGTTTTAACCTAACCTC--ATGGCTTATTTCTGTTCCTTG
CATGGATTTTTCAGTCAGGCAGCGGGGCAGAAAACGAACAATGGTTGGGTAAAACTTGACCCGGAGTTGCTGAATGCGAC
GAATTGAACCTGCATTACCATCCATTGTGTGTGTTAGTTTGCATGTAGC------------GGTTCAGCGGAATTGGCTC
TTGCAGAATTGAAATGGATGTCAACGTGTCAAGTGAATCATTTGTAACACTGCTTGTTGTACTTCCGTTAGGAATCATAT
ATCTCCCAACTCTTT-AACTTGTGAGTTTTGGATGATCGTTGTGCATCTTTGTGAACCTGTACGTTTACTTTGTTGCGGT
GCATCTGGTTGAAATGTGAATTGATGTAATTTACTGAAATTACAACCATGTGTGTTCTCCGCATTAGCAGAAGTTTGAAC
GAAACTCAAACTCCGTCGCACCAGTGTTATACTACCAAATCACTTTGCACCGAGCAGCAGCTTGAATCATAGTGATTTTC
CCACGAATTTTCTGCGTCAGAGAAAAATTTCCGCACCACTTCAACTATTTTTTTTACGGT-GAGGAAATCATCACTTTTT
TTGAGGGAAAGGAAATCATCACT----------------------------TTTTTTTTGAGACACAGGAAATCATCACT
TGAATT--TTTTTAGGCAAACTCTGAATTGTTATAAAAGCCTATAAAGTTACT-----------GCCACCGGGGCTCGCA
ACTACTGTTTTTTCTTTCTAGATAGACTAGAAGAGGTTTTTTTTTACGAAACTCTAGACTAGAAGAGGTGCCCG------
CTGTTGTCCAGAAAGGCCCAATTAAGCAGGATATAGGCCTGGCCGGCCTAACCCGGAGGCCCATGTGAGGTCACGCGGAG
CCAGTTCACCATCCTCGCCTCTCGCCTGGTTCTACGCGACTCGTTTAGTACCACATCGCCTAGCGAGGAGGAAG------
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-------------------------------------CGCAACGCCGCGAGGCTATAAAGAGCTGGGGTGGCCACCGTTT
TAACTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTTTTATCAGTTTAATATCTGATATGTGGGC
CATGTGCCCACAACGATATTAAATTTATTTTTTATGGGAGAGGGC--
>chr3D_4641
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-----------------------------------GCGACTCCTTTAGTACCACCTCGCCTAGCGAAGAGGGGACGGGAG
GCCGAGAGGCTACAAATAGAGGGGAGGGCACGGCTAACAACTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG
TATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCATGTGCCCACAACGATATTAAATTTATTTTTTATGGGGGAGG
GCTCACCACAGTGGCTTGCCACTGGGGCCCTCAGGTGTCGCCCAGTGCGTTGCACTATTGCCTGGGCAGGCGCACCCCAA
CCAAATTTTAAAATTAAAATTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTCCATGGTGCTGGTTCATAGGGGAACATG
CACGCAGACTTTCCGAATGTCATCGATAAGGTCATGCCGGCTCCAGTTGAGGAGCGGCTCGTTCTGACGGGGGTAGTTGT
CATTCGGTGGTCTAGGGACCGACCTAGATGTGGATTTTTAGTATGTTCGAGGTGCTTTGTACTTCTAATGAACTAATAGA
TCTGAATCTTTTCTGAAAAAAAGGGTGATTCACATTGAAGTATGACATCAAACATTGATATAGAACAATCTTGATTCTAG
AGGATGAGAATCATTCTGGGCTAGAGTTGGAGCTCGTCTAATATGATCAGTGGGCAAGGCGATAAATATTAGGAATGCAT
TTTTGTTGTTGTTGTTGCTATATATCTGAGGTATTTTTCTATTTATTGCACGCACAATTCACTAGTATTCCTTGATGGAT
GGATGCTACCTTGCCTTCTTCGAACGTCGCTTCTGTTGTGCAGAGCTACACACTAGAGTATATTCCGCAAAAGAACGCAC
AGAATGATTGATAACAGAGAGACTGGAAGCGACGACCGCATTCCTGGGGAGTTTCCCGGTCGATCGACGCCGCCACTCCG
GCGTCTCATCTCACCGTGCAGTGCACCGCCTCAGGCAGCCGTGCATGCACGGATCGTCAGGCTTCAGAACACACCCCGAT
AGGGCTCGGCCTCCAAGAAAAGCCGTGAGCAACTCAGGCCCATAATACAGGCCTCATCGGGAAAGGCCGTCTCGCTGGAG
GCCCATGCAACAAAGAGGCTGGCTCGGGGCCGGGGGGCACGCAGCGCAGCGTCCGCGCTCCGCAGCCGCGCGCGAGAGGC
GACTCCTTTAGTACCACCTCGCCTAGCGAAGAGGGGACGGGAGGCCGAGAGGCTACAAATAGAGGGGAGGGCACGGCTAA
CAACTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGC
AATGTGCCCACAACGATATTAAATTTATTTTTTATGGGGAGGGC---
>SNPs
-----------S-------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S--------------S------------------------------
----S-----------------S--------------------------------------------------SS-----
S-------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
---S-------------------------------S--S-----------------------------------------
---S-----------S---------S---------------S--------S---S------S------------------
----SSSSS----------------------------------------------------------------------S
------------------S-SSSS------------SSSSS--------------------------------S--S---
-----SS----------------S--------------------S----S-------S---------SSS----------
---------S----------------S----------------S--S------S-------------------S------
-----------------------------------------------------------------S---------SS---
-------------------------------------------------------S------------------------
-----------S------------------------S--------------S----------------------------
--------------------------------------------SS----------------------------------
----------------S---------SSSSSSSSS----------------------------------------S----
----------------------------------S---------------S--SS-S-------S---------------
SS--------------------------------SSS--------------------S----------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-S---S-----------------------------------------S--------------------------------
-----------------------------S--------------------S-----S-----------S--S--------
-----------------------------------------------------S--------------------------
---------------------------S--------------------S--S----------------------------
---S-------------S------------------------------SS-SSS--S--SSS-S-S-SSS-S--------
----------------------------S-----------------S---------------------------------
-----------------S--------------------------------------------------------S-----
-------------------S-------------S-S---------------------S-----------S----------
------S------------------S------------------S--S---S---------------------------S
------------------------S-S-----------------------------------------------------
------------S-----S-----S----------------S-S-----------------------S------------
-----S------S----------------------------------------------------------S--------
----------------------S---S----------S------------------------------------------
--S-----------------S--------------SS----------------------------------S--------
------S-----------------SSS------------------------S-----------S----------------
--S------S--------------S--SSSSSSS-SSSSS-S-SS-SSSSSSSSSS---SS----------SSS------
---------------------------------------S----------------S-----------------------
---------------S------S-----S--S-------------------------------S----------------
--------SS----------S-------------------S--------SS-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S------------------------S--S-----S-----
---S-SS---S-----S----SSSSSSSS------------------S------------------------------S-
----------------S--------------------------------S------------S----S------------
-----S-----------S------------------------------S-------------------------------
------S--S--------------S-------------------------------------------------------
----------------------------------------------------------------------S---------
---------------------------------S-----------------------------S-------------S--
---------S-----S----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S-----------------------------------------S-----S----------------
-----------------------------------------------------------------S--------------
-----SS------------------S----------------------------------S-------------------
-------------------------------------------------S-S----SSSSS-------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------S-----------------
---S-------------------S----------------------------------------------S---S-SSS-
------------------------------S-------------------------------------------------
------------------------S-------------------------------------------------------
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-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
------SS---------------------------------------
>forward_970
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----------------------------------------------------------------------CTGTTTGCTG
ACCTTCCCCT----------------------------------------------------------------------
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>reverse_2514
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---------------------------------ACGGCAACTCTTTCACCTCC---------------------------
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>forward_2475
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-------------------------------------------------------TGAGCAGTACCATTAGCCGG-----
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>reverse_3888
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-----------------------------------------------TGGTTTTCACACCCTGCCTT-------------
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>forward_3159
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-------------------AGTGCCGAATGAGGACTTCG-----------------------------------------
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>reverse_5071
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------------------------------GTATTGGCCTAACCCGGAGG------------------------------
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-----------------------------------------------
