>input_sequence_27062
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------------------------------------------------ATGAAGAGCCTGCAGTGCTTCAAGCAGGGCGG
CGGGAATGGGGACGGCGCGGGGAGGCGGCTGGAGCGGCGGCTGTCGCTGGGGGACTACAAGAAGGCGGTGTCGTGGTCCA
AGTACCTGGTGGCGCCGCCGGGGGCCAAGATCCGGGGCGGCGGCGAGGAGCTCTGGAGCGCCGACCTCTCCAAGCTCCAG
ATCCGGGCGCGCTTCGCCTCCGGCCGCCACAGCCGCGTCTACTCCGGCCGCTACGCCGGCCGCGAGGTCGCCATCAAGAT
GGTCAGCCAGCCCGAGGAGGACGCCGCGCTCGCCGCCGAGCTCGAGCGCCAGTTCGCCTCCGAGGTCGCGCTCCTCCTCC
GCCTCCGCCACCACAACATCCTCTCCGTACGCTCACTACTCCCATCCCATTTTTATTTTTACCTTCTCTTTCAGCCATTG
TTTTCACCACCATGGA-TTAGATTAGATTAGATTAGATA-------------GATATGAATCTGAATTCAGTAGTAAATT
GGTTGGGTTGTTGGTGCCCATGCCTGAGGATTTGCCATCCCAACCGATCTTCACATGAAAGGTGCAAGCTTTATGCTTTC
GTCGGTTGGGTTGGATCGACAAGGGGAAATAATTGTTCATGCCTCTTTAGAGTCTTTACACTATGTATGTATGTATAACC
TGAACAAGAGGGAAAGAACATGGCAGACAAGCTTTCTCGTCTCCTATCAATTTTATTATTGTTTCTTTTTCCGAGGAGAG
GCGAAAAAAACAGTGGTCCTTCCTCGGCGATTTCCGTTAAAGAAACCGCGGGCCACAAAGCATCTACACTTCTAAAAATT
GTGAATTTCAGGTAGTA-GTAGCTAATGTCGGTGATGGTGAAATCCCTTGACATTTACGGATCTGCCGGACCAAATCTTT
AGCAAGGCATGATCGTTTGTTTCCTCCATAGTAGTTCACTGTCTCCA--------------------TCTGTAATCTTGT
ACAGTCATACTGATTCCTGTCCATTCACAAAGTGCAGCTTTTAGTTGGTAATAGCAC-TTGTACTTTGGCCTGAATTATG
TTAGTAGAGCCCCTGTTTGT---------ACGACCAAGTGCTTCAAAGCAACCGTGCAAATATTTTTAGTATCTGTGTTT
TTTTTTATGGCGGTAAAATGGAATATTTCAGACAGGAGG---------------------TCACGACACCTACAGCTCTG
TAGACGATAAGCCGATATCGTTAGATAGATACTTGGATTTTGTAATTAA----AGTGGGTGGTGGACCATGTAGGACATG
CCCACTCTTAAGTCTTATAACTGCTTTCAGATGCAGAGAAAAGCGCATCTTATCATATAAGTGTTTAATAACGAGAATCG
ACCCGGAGAGTGATAGA----TAGATAGTTCATGTGCAGATAAATATCAATCCTGCTTTTCCC-TTGCTAAGTGTGGTCC
TGTCTCACTCGGCCCCACAAGTCACATGGATAAAAGG-TTAGTTGGCTGCATTAGATGGTTTATTTAGCTAGAAAATTTA
AACGGTATTATAGCTGGTACTACTTAAGTTCAGACTGTTCTCTGTATCTGCTTTTACACACTGCCAACTTGGTGAATGTT
CTCGACTTCTCATACTATGCTTTTCGATGAACCA-----TACATCCTGGGTTGTGAACTTATGTCAGTAATAAGGTTCAA
ACAATTTTGCTTATGTTCCATGTTGTATCTAAAATGATTGTAATACTTA--GTTACTTTGGTGTATCAACCCTTCTTGTT
AAGTCTCTGTTCCGTATGGAATTTGATGGTAATCTTCTTATTTTGCAGTTCGTCGCAGCTTGCAAGAAACCACCGGTATT
CTGTATTATCACTGAGTACATGGCAGGGGGTTCCCTTAGGAAGTATCTACACCAGCAAGAGCCTCATTCAGTCCCCATCC
AACTAGTTCTGAAACTAGCTTTAGACATCGCCCGTGGGATGAGCTACCTGCACTCACAGGGGATACTCCATAGAGACCTG
AAGTCGGAGAACGTGCTTCTCGGGGAAGATATGTCGGTCAAAGTGGCGGATTTCGGGATCTCGTGTCTCGAGTCGCAGTG
CGGTAGCGGCAAGGGGTTTACGGGGACCTATCGGTGGATGGCTCCTGAAATGATCAAGGAGAAAAGCCATACTCGAAAAG
TCGATGTGTACAGCTTTGGGATTGTCTTGTGGGAGATTTTAACCGCTTTGGTTCCATTCAGCGAGATGACACCTGAACAG
GCCGCTATAGCTGTCGCCCTCAAGGTATGTATGGATCCTTACACAACAGTTCTTTATGTGTGGATGCTAGTTTCTCATTT
GTAGATTCTAAAGACTAATTTCATTTCGTGGCATACTAGGGTAGAATTTGTTGTTCGCCT--------------------
---TGCTTCATAAGTATACGGAGCATGTTTGTTAGCTCAGATTTGGTCAATGGAGTATGTTTG-GTGCTCAGCTATCAAT
GTATTAATG--------TTTCGTGGAATTCTCCAAATTGTATTAATGTTTCGCAAGT-----------------ACCATA
GACAGACCTCAGAATTTGGGG-AAACATCAGTTCATTATGCTAATCAAGTTCAACATGCTTCAAATGTTCCATCATTTTT
TAACCAGCTATTTATTTTTTCTGTGCAGAATGCGAGGCCACCGTTGCCTGCTTCGTGCCCTGTGGCCATGAGCCATCTGA
TATCTCAGTGCTGGGCGACAAACCCAGAAAGAAGGCCTCAGTTTGAGGACATCGTCACGATCCTTGAGGGCTACAAGGAA
GCGCTTGACAATGACCCATCCTTCTTCCTGTCATACATACCGCCTCCGACGCACCACCAGCAGCAGCATCAGCATCAGCA
TCAGCAGAGCCTTCTACGGTGCTTCCCTCGGGTCAAATCAATGCGACGGTCCACGTCTCTCAAAGCGTGA----------
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>chr3B_1_TraesCS3B01G000400
CCATCGACCATCCACATCTTCAGTACCATCAAAGATGTGGCGCACCTACGGGCTAAGGCAGGCACAAACGGGTTTACAAA
CGTCCTTCCCCACACTTAGTTTGTAGTTGTATCATGTATGGGGGCTGTGCAACCCCTTGTCCTCTGTTCTGCGCCTACGC
TGCTACCATGCCTCCTCGCA----CGCACGCGCACTGATTGTAACCCC-ATGCTACAACTTTGCTTCCATCAATGAAAAG
ACACGCAATCTTTGCGTATTCGTGAAG-AAAAAAAATGCTATCATATTGCATTCATTCAACAAGTCCACAGTCGAGTGTG
GAAAATATTC-AAGCAAGTCAAGGCTCTCCTTGTTAGCCGAGTTGAGACGAGGTCCAAAGTGA-----------------
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---------------------ACCAAGTCTCGGTTCACTGTCACTCTCACACTA--------------TCACTGTATCAC
TCTCTGCCAAACCATCCAAAAGCAACCTCATCTCGCTGCATGTTACTCTGCTCCGCTCCGCTCTTTGGCTCCTTCCTCCT
GCTACCGCTCTCGGCTCTCTCTCCAAAACCACGGCACCCATCCCATCGC-CCTCCTCCTCCTCCCGCAATCATCCGCAGC
TTCGCAGCACCTTCTTCCTCCTCCCTCAGACACA------------CACACCACCATCCTCTGCCGTTTCTTCCATTGGA
TGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCGATCTGATTCGGACTGATTTC-----------TTTTCTACCCGCCCGC
CCGCTCCCCTTCGCCGAGGGGACAAGAAAAGAAA-----AGAAAAGAAATGAAGAGCCTGCAGTGCTTCAAGCAGGGCGG
CGGGAATGGGGACGGCGCGGGGAGGCGGCTGGAGCGGCGGCTGTCGCTGGGGGACTACAAGAAGGCGGTGTCGTGGTCCA
AGTACCTGGTGGCGCCGCCGGGGGCCAAGATCCGGGGCGGCGGCGAGGAGCTCTGGAGCGCCGACCTCTCCAAGCTCCAG
ATCCGGGCGCGCTTCGCCTCCGGCCGCCACAGCCGCGTCTACTCCGGCCGCTACGCCGGCCGCGAGGTCGCCATCAAGAT
GGTCAGCCAGCCCGAGGAGGACGCCGCGCTCGCCGCCGAGCTCGAGCGCCAGTTCGCCTCCGAGGTCGCGCTCCTCCTCC
GCCTCCGCCACCACAACATCCTCTCCGTACGCTCACTACTCCCATCCCATTTTTATTTTTACCTTCTCTTTCAGCCATTG
TTTTCACCACCATGGA-TTAGATTAGATTAGATTAGATA-------------GATATGAATCTGAATTCAGTAGTAAATT
GGTTGGGTTGTTGGTGCCCATGCCTGAGGATTTGCCATCCCAACCGATCTTCACATGAAAGGTGCAAGCTTTATGCTTTC
GTCGGTTGGGTTGGATCGACAAGGGGAAATAATTGTTCATGCCTCTTTAGAGTCTTTACACTATGTATGTATGTATAACC
TGAACAAGAGGGAAAGAACATGGCAGACAAGCTTTCTCGTCTCCTATCAATTTTATTATTGTTTCTTTTTCCGAGGAGAG
GCGAAAAAAACAGTGGTCCTTCCTCGGCGATTTCCGTTAAAGAAACCGCGGGCCACAAAGCATCTACACTTCTAAAAATT
GTGAATTTCAGGTAGTA-GTAGCTAATGTCGGTGATGGTGAAATCCCTTGACATTTACGGATCTGCCGGACCAAATCTTT
AGCAAGGCATGATCGTTTGTTTCCTCCATAGTAGTTCACTGTCTCCA--------------------TCTGTAATCTTGT
ACAGTCATACTGATTCCTGTCCATTCACAAAGTGCAGCTTTTAGTTGGTAATAGCAC-TTGTACTTTGGCCTGAATTATG
TTAGTAGAGCCCCTGTTTGT---------ACGACCAAGTGCTTCAAAGCAACCGTGCAAATATTTTTAGTATCTGTGTTT
TTTTTTATGGCGGTAAAATGGAATATTTCAGACAGGAGG---------------------TCACGACACCTACAGCTCTG
TAGACGATAAGCCGATATCGTTAGATAGATACTTGGATTTTGTAATTAA----AGTGGGTGGTGGACCATGTAGGACATG
CCCACTCTTAAGTCTTATAACTGCTTTCAGATGCAGAGAAAAGCGCATCTTATCATATAAGTGTTTAATAACGAGAATCG
ACCCGGAGAGTGATAGA----TAGATAGTTCATGTGCAGATAAATATCAATCCTGCTTTTCCC-TTGCTAAGTGTGGTCC
TGTCTCACTCGGCCCCACAAGTCACATGGATAAAAGG-TTAGTTGGCTGCATTAGATGGTTTATTTAGCTAGAAAATTTA
AACGGTATTATAGCTGGTACTACTTAAGTTCAGACTGTTCTCTGTATCTGCTTTTACACACTGCCAACTTGGTGAATGTT
CTCGACTTCTCATACTATGCTTTTCGATGAACCA-----TACATCCTGGGTTGTGAACTTATGTCAGTAATAAGGTTCAA
ACAATTTTGCTTATGTTCCATGTTGTATCTAAAATGATTGTAATACTTA--GTTACTTTGGTGTATCAACCCTTCTTGTT
AAGTCTCTGTTCCGTATGGAATTTGATGGTAATCTTCTTATTTTGCAGTTCGTCGCAGCTTGCAAGAAACCACCGGTATT
CTGTATTATCACTGAGTACATGGCAGGGGGTTCCCTTAGGAAGTATCTACACCAGCAAGAGCCTCATTCAGTCCCCATCC
AACTAGTTCTGAAACTAGCTTTAGACATCGCCCGTGGGATGAGCTACCTGCACTCACAGGGGATACTCCATAGAGACCTG
AAGTCGGAGAACGTGCTTCTCGGGGAAGATATGTCGGTCAAAGTGGCGGATTTCGGGATCTCGTGTCTCGAGTCGCAGTG
CGGTAGCGGCAAGGGGTTTACGGGGACCTATCGGTGGATGGCTCCTGAAATGATCAAGGAGAAAAGCCATACTCGAAAAG
TCGATGTGTACAGCTTTGGGATTGTCTTGTGGGAGATTTTAACCGCTTTGGTTCCATTCAGCGAGATGACACCTGAACAG
GCCGCTATAGCTGTCGCCCTCAAGGTATGTATGGATCCTTACACAACAGTTCTTTATGTGTGGATGCTAGTTTCTCATTT
GTAGATTCTAAAGACTAATTTCATTTCGTGGCATACTAGGGTAGAATTTGTTGTTCGCCT--------------------
---TGCTTCATAAGTATACGGAGCATGTTTGTTAGCTCAGATTTGGTCAATGGAGTATGTTTG-GTGCTCAGCTATCAAT
GTATTAATG--------TTTCGTGGAATTCTCCAAATTGTATTAATGTTTCGCAAGT-----------------ACCATA
GACAGACCTCAGAATTTGGGG-AAACATCAGTTCATTATGCTAATCAAGTTCAACATGCTTCAAATGTTCCATCATTTTT
TAACCAGCTATTTATTTTTTCTGTGCAGAATGCGAGGCCACCGTTGCCTGCTTCGTGCCCTGTGGCCATGAGCCATCTGA
TATCTCAGTGCTGGGCGACAAACCCAGAAAGAAGGCCTCAGTTTGAGGACATCGTCACGATCCTTGAGGGCTACAAGGAA
GCGCTTGACAATGACCCATCCTTCTTCCTGTCATACATACCGCCTCCGACGCACCACCAGCAGCAGCATCAGCATCAGCA
TCAGCAGAGCCTTCTACGGTGCTTCCCTCGGGTCAAATCAATGCGACGGTCCACGTCTCTCAAAGCGTGATGTCTGCGGG
CGGTGCTCCTCCTTCATCCTCGCCATGTATAATATGCACCTTTCTCTGAGTTTCTTCCTCTCTATGTGCCGGCCCTCTAT
TATTGCGGCATCTAGGCTCGCTCCAGTTTCGGTTTTCCTTTCTTCTTGGTTATTATGATTGCCATCATTCATGATGCCGT
CGAAGCCGGCCGTGCGTTTCTATCTAGATATGACAAAGCAGTTCTCCCTGCAGATTATCTGTCGGCTGCCGTTTACCTGT
GACCGAGCGATGGAACCATGAACTAGCTAGCTCTTGTAATTGTAATTATAACTGAGCTCTTCATGAATCGTGTTCCTACT
CTCTTATTTGGTTCAGCCAGAGTTACCATTATCTGAGCCTTGCATTTTGAATTTTTGAGGCTTATCCGGATGGATTGCCA
TTTTGTCGTACCGAATTGATGAATGATATCTGCACTAGATGTAAAACTCCTGGGCATGAACTTTCTACTGTGCTGCACCA
AGAATACACAATGTTGTACAGATAGAAGGCAAAATTCCTATGACATGAACTGGCTTTCATGCTGTAAAATTCAGTTTGAT
TTGTCTAGCGCCAACTTGGGAGCAAATTAAAAAGAGATCGTGGGTTTAGTCCCAATTCTATGGAAATCGTGACATTTCTT
ATTCTATATCATGAGCAGCACTTCAATTGGTTAGAGCACCGGGCTACGCTGGTCTAAGAACGAACCCAGTTCAGATCATT
GTACATGCCCTACAACTTCAGGCCAGGCAAAGAGCTGAGGTCGATAGTCGGGGGTTGCTTTATGATGTAATGTCGCCTTC
CACGACAAAATCTTCTTCCGAGACCCTGAGTTCTACTTCGGCAAACACCGACACACTGTGTGCATCAATGCCCCTCCATC
ACCACTTCAAAAGAGGATAGTGCCGGTCTCGACCAGCCTCGAGGCGGCTGAGCCTTCACCAACCCACCAGCCCGCCCAAT
CGATCGTCGTCAACATGATCTTTCGAGCCA
>chr3A_17
TCTTCGGCACT----------------ATCAAAGATGAGGCGCGCCTATGGGCTAAGGCAGGCGCAAACGAGCTTAGAAA
CATCCTTCCCGGCACTTAGTTTGTGGTTGTATGGGGGGGGGGGGGCGAGCAACCCCTTGCCTTCTCTTCTGCTCCTACGC
TCGCTA-------CCACGCC----TGCTCGCACACTGATTGTAACCCCGATGCTACAACTCTCCTTCTGTCAATGAAAAG
ACACGCAACCTTTGCGTATAAGTGAAGAAAAAAAAATGCGATCATATTGCATTCATTCAACAAGTCCACAGTCGAGTGAG
GAAAATATTC-AAGCAAGTCAAGGCTCT---TCTTAGCCAAGGAGAGACCAAGTCCTGGTTCACTTTCACTCATTGTCAC
TCTCCCACTCTCTGCCAAACCAAAAGCTATCTCATTTCGCATGTTACTCTGCTCTGCTCTTTGGCTCCTTCCTCCTCGCT
GTTGGCCGCTCTCCAAAACCACGGCCCCCATCGCCCTCCTCCTCCTCCTCCTCCCGCAATCATCCATAGCTTCGCAGCAC
CATCTTCATCCTCCCTAGCACGCGATGGGCCTCTTCGGCAGTAGCAGCGGCATGGGTAAGGGCAAGGGCACCCCCGGCGC
CTCGTCCTCCCGTGCTCCTCCTCCCCCTCCTCCTCCGGCGCCGGCGCGTTTTCGCCTAGGTCGCCGGCGCCTGCACATCC
CGGTGCACCAAGCGCGGTGGCGCTGGGAGTAAATGCAGCCGCTTCCCTACCCCGACGTGAAGCTACCGCACCACTGGCAC
CTGGATCCGCACCGGATCCCGGTGCCAGCGGTTCCGCAGACCCAGCGGGCGCACGACGAGGAGGTGCGCAGAGGCCGCGT
GCAGCTCACGTCGGAGCAGCGGCGGATGCCGGAGTACGCCGCCGACTCTCCCAACTGGGAGGCTTGGTTTGCCCTCGAAC
ACGAGGAGCAATGGCGTTCAGGCGTCGACGCCATCCCGCCGCCGTTTCCACCGCTGCCCACGCGGGTAGAGCCGGAGGAA
ATGGAGGCGGAGGCAGAGTACCAAGCCACCCTCGAGGAGGCCCTGCAGCACGCTCTGGAGGCTAGCCGTCTCGAGGAGGA
CGCACACTGGGATGGGCTGGAGCAAGCTATTGCCCTGTGGGCAGAGGGGGACTTTGTCCACACCCGGCTCTTCGTCCTGC
CTCCGCCCGTCGAGCCCAAGCCGGAGCCGACGCGGACACACTCCCCGCCTCCACCCACTTGGTCGGAGGAGGCCTACACT
TGGACGGACGAATACCGTGAGTGTGTGAGCGCGCCTCCTGTCCACTTCGCCGCGACGCCGGCGCAGGAGGCGGCCCACCT
TGAGCGTTGAAAGGCGCACTGGCTCCGCCAGGAGCAGGCCGACGGCGAGCGGCAGATGCGCTACGAGGCGATGCTGCAAC
GCGACGCGGAGACGCTCCGGCTTTAGGAGGAGGAGGAAAAGCACGCGCGGCTAGCCGCAATGCCGCCGCCCCAACAGACA
CTGGAGGAGGCTGCCCTGGCAGCGTACCAGGCGGTGTTCGGGTGGGCTGGCCCTGCTCCCATCTTCATCGATCTCACCGG
TGGCGATGGCGACGTGGACGTCAAGGGTAAGGGCAAGGCCGATGACGTCTGGGCAGCGTGCGGGGTGGCTCAGACTTTTT
TATGTTTTAATTAATGTGTAATTAGGTTTAAGTGGACTTTGGCCGGCAGTTGACCGACCACTTATGCTTATTTTATGCTA
GCTGTTTTTTTTCCATGCCGGCACATTTGGGTCAGCCTGCCGTTGGGCGGTCAAGTCGACCCATTTAAGAATGCGGACGC
GCACATCTGCCTGGCCGACCCAAACGGACGAGAAGCGGATAAAGCACGCGTCCGATTGGGTCGCCCCGTTGGAGTTGCTC
TCAATGAAAACACACACAATCTTTGCGTATTCGTGAAGAAGAAAAAATATCCTAAGCAAGTCAAGGCTGTTGGTAGTAGA
GGAGAGACGATGGCTCTCAAGACCAAGTCCTGGTTCACTTTCACTTTCACCCACTGTCACTCTCCTACTCACTGTATCAC
TCTCTGCCAAACCATCCAAAAGCAATCTCATTTC---GCATGTTACTCTGCTCT-----GCTCTTTGGCTCCTTCCTCCC
C--GCTGCTGGCCGCTA----TCCAAAACCACGGCACCCATCGCCCTCCTCCTCCTCCTCCTCCTGCAATCACCCGCAGC
TTCGCAGCACCTTCTTCCTCCTCCCTCAGACACA------------CACACCACCATCCTCTGCCGTTTCTTCCATTGGA
TGTGAATGGAAGGTCGGAGGACACTGGAATGTAGGGCCGGGTAAAGAAAAGGAGCAACAAATGTAGGGCCTGAAATCTCT
CCCTCCGCCTTTACTCGCCGGGAGCCCCGGGCCTGATCT-----------------------------------------
--------------------------------------------------------------------------------
---------------------------GATCCGATCTGATTCGGAGTGATTTCCGGGCGCCTCGTTTTCTAGCCGCCCGC
TCCCCCCGGAGGCCACAGCCGTGAGCTCCGCCGACGGGGAGAAAAGAAATGAAGAGCCTGCAGTGCTTCAAGCAGGGCGG
CGG------GGATGGCGCGGGGAGGCGGCTGGAGCGGCGGCTGTCGCTGGGGGACTACAAGAAGGCGGTGTCCTGGTCCA
AGTACCTGGTGGCGCCGCCGGGGGCCAAGATCCGGGGCGGCGGCGAGGAGCTCTGGAGCGCCGACCTCTCCAAGCTCCAG
ATCCGCGCGCGCTTCGCCTCCGGCCGCCACAGCCGCGTCTACTCCGGCCGCTACAACGGCCGCGAGGTCGCCATCAAGAT
GGTCAGCCAGCCCGAGGAGGACGCCGCGCTCGCCGCCGAGCTCGAGCGCCAGTTCGCCTCCGAGGTCGCGCTCCTCCTCC
GCCTCCGCCACCACAACATCCTCTCCGTACGCTCTCTACTCCCAACCCAT-----TTTTTACCTTCTCTTTCAGCCATTG
TTTTCACCACGGATTAGTTAGATTAGATTAGATTAGATA-------------TATATGAATCTGAATTGCGTAGTAAATT
GGTTGTGTTGTTGGTGCCCATGCCTGAGGATTTGCCATCCCAACCGATCTTCACATTAAAGGTGCAAACTTTACGCTTTC
GTC-----GGTTGGATCGACAAGGGGAAATAATTGTTCATGCCTCTTT---------ACACTATGTATGCATGTATAACC
TGAACAAGAGGGAAAGAACATGGCAGACAAGCTTCTT--TCCCCTATCAATTTTATTGTTCTTTTTTGAGGA--------
---AAAAAAACAGTGGTCCTTCCTCGGCGATTTCCGTTAAAGAAACCGCGGGCCACAAAGCATCTACACTTAT--AAATT
GTGAATTTCAGGTAGTA-GT---TAATGTTTGTGATGGTGAAATCCCTTGACACTTATGGATCTGCTGGAACAAATCTTT
AGTAAGGCATGATTGTTTGTTTCCTCCATAGTAGTTCACTGTCTCCA--------------------T------------
--------ACTGATTGCTGTCCATTCGTAAACCATGACTTTTAGTTGGCAATAGCACTTTGTACTTTTGCCTAAATTATG
TTACTAGAGCCCCTGTTTGTACAGTCTGGACGACTAAGTGCACCAAAGCAACCTTGCAAATATTTTTATTCTCTCTGTGG
TTTTGGATGGCGGTAAAACGGAATATTTCGGACAAGAGTGTCGCAGAAGGCTTGACGAGTTCACGACACCTACAGCTCTG
TACACGATAAGCCGATAACGT----TAGATACATGGATTTTCTAATTAA----AGTGGGTGGTGGACCATGTAGGGCGCG
CCCACTCTTAAGTCT--TAACTGCTTTCAGATGCAGAGAAAAGCGCATCTTATCGTTTAAGTGTTTAATAACGAGAATCG
ACTCGGAGAGTGATAGATAGATAGATAGTTCATGTGCAGATAAATATCAATCCCGCTTTTCCCTTTGCTAAGTGTGGCCC
TGTCTCACTCGGCCCCACAAGTCACATGGAGAAAAGGTTTAGTTGGCTGCATCAAATGGATTATTAAGCTAGAAAGTTCA
AACGGTATTATGGTTGGTACTACTTAAGTTCATACTGTTCTCTGTATCTGCTTTTAGGCACTGCCAACCT-CCGAATATT
CTCCATATCTCATACTGTGCTTTTCTATGAAGCAAAGTTTACATGCTGGGTTGTGAACATATGTCAGTAATAAGGTTGAA
ACAATTTTTCTTATGATCCATGTTGTATTTGAAATGATTGGAATACTTA--GTTACTTTGGTGTATCAACCCTTCTTGTT
AAGTCTCTGTTTGGAATGGAATATAATGGTAATCTTCTGATTTTGCAGTTCGTTGCAGCATGCAAGAAGCCACCAGTGTT
CTGTATCATCACTGAGTACATGGCAGGGGGTTCCCTTAGGAAGTATCTACACCAGCAAGAGCCTCATTCAGTCCCCATCG
AACTAGTTCTGAAACTAGCTCTAGACATTGCCCGTGGGATGAGCTACCTGCACTCACAGGGGATACTCCATAGGGACCTG
AAGTCAGAGAACGTGCTTCTCGGGGAAGATATGTCCGTCAAAGTGGCGGATTTCGGGATCTCATGTTTGGAGTCGCAGTG
CGGTAGCGGCAAGGGGTTTACGGGGACCTATCGGTGGATGGCTCCTGAAATGATCAAGGAGAAAAACCATACTAGAAAAG
TCGATGTGTACAGCTTTGGGATCGTCTTGTGGGAGATTTTAACTGCTTTGGTTCCATTCAGCGAGATGACACCTGAGCAG
GCTGCTATAGCTGTCGCCCTCAAGGTATGTTTGTTGATGGACCACTTGT---TTTATGTGTGGATGCTACTTTCTCGCTC
CCAGATTCTGGAGACTAATTTTGATTCGTGGCATACCATGGTAGAATTGCTTGTCCGTCATCCGACAGATATCTTGTTTT
ATGTGCTTGATAAGTATACATAGCACGTTCGTCAGCTCAGTTTCGAGAATTGAAGTGTGTTGGTGTGCTCAGCTGTCAAT
GTTATTCTTCGCTGAATTTCGTGATAATTCCCCAATTTGTATTGTACAACAAACATAAATATCTGGCAAGTACCACCATA
GGCATACTTCTTAAGTTTGGGCAAATATTTGTTTATTCTTACTGTCGATTTCTACATGCTTTTTGTAACACCAGCTAA--
----------------TTTTCTTTGCAGAATGCGAGGCCACCGCTACCTGCTTCGTGCCCTGTGGCCATGAGCCATCTGA
TATCTCAGTGCTGGGCGACAAACCCGGAAAGAAGACCTCAGTTTGACGATATCGTCACGGTCCTCGAGGGCTACAAGGAA
GCGCTTGACAACGACCCGTCATTCTTCCTGTCATACATACCGCCTCCGCCGCAACACCACCCG------------CAGCA
CCAGCAGAGCCTTCTCCGGTGCTTCCCTCGGGTGAAATCAGTGCGACGGTCCGCTTCTCTCAAGGCATGATGTCTGCGGG
CGGTGCTCCTCCTTCATCCTCGCCATGTATAATATGCACCTTTCTCTGAGTTTCTTCCTCTCTATGTGCCGGCCCTCTAT
TATTGCGGCATCTAGGCTCGCTCCAATTTCGTTTTTCCTTTCTTCTTGGTTATTATGATTGCCATCATTGATGATGCCGT
CGAAGCC-GCCGTGCGTTTCTATCTAGATATGACAAAGCAGTTCTCCCTGCAGATTATCTATCGGCTGCCGTCTACTTGT
GACCGAGTGATGGAACCATGAACTAGCTAGCTTTTGTAATTGTAATTATAACTGAGCTCTTCATGAATCGTGTTCCTACT
CTTTTATCTGCTTCAGCAAGAATTACCATTATCTTAGCCTTACATAACTGA--------GCTTCTCCGAAGGGATTGCCA
TTTTGTCGCACTAC------------------------ATGTAAAACTCCTGGGCATGAACTTTCTACCATGCTGCATCA
AGAATACACAATGTTGTACAGATAGAAGGCAAAATTCCTGTCACATGAACTGGCTTTCATACTGTAAAATTCA-------
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>chr3D_125
CTGGCT--------------------------------------------------------------------------
---------------------------------------------------ACCCCTTGTTCTCTGTTCTGCTCCTATGC
TTGCTA-------CCATGCCTCCTTGCGCGCGCACCGATTGTAACCCC-ATGCTACAACTCTCCGTCCATCAATGAAAAG
ACACGTAATCTTTGCGTATTCGTGAAG-AAAAAAAATGCTATCATAGTACT---ATTCAACAAGTCCACAGTCGAGTGTG
AAAAATATTCTAAGTAAGTCAAGGCTAT---TGTTGGCCGAGGAGAGACGGGGTCCCGGTTCAGTTTCACTCACTGTCAC
TCTCCCCCTCACTG------------------------------------------------------------------
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----------------------------------------------------TA--------------TGACTCTATCAC
TCTCTGCCAAACCATCCAAAAGCTCTCTTATTTCGCTGCATGTTACTCTGCTCT-----GCTCTTTGGCTCCTTCCTCCT
GCTGCCGCTGGCCGCTCTCCAAAACCACCAC-------------------------CCTCCTCCCGCAATCATCCGCAGC
TTCGCAGCACCTTCTTCCTCCTCCCTCTCTCCCTCCCTCCCTCAGCCACACCACGAGCCTCCACTGG-------ATTGGA
TGTGAATGGAAGGTCGGAGGATACTGGAATGTAGGGCCGGGTAAAGAGAGGGAGCAAGAAACGCCAGCAGACAGCC----
-----------------CCGGGAGCCCCGGCCCTGATCT-----------------------------------------
--------------------------------------------------------------------------------
---------------------------GATCCGATCTGATTTCT-----------------------------CGCCCGC
CCGCC-------GCCGCGGGGCGAAGAAAAGAGC----------AGAAATGAAGAGCCTGCAGTGCTTCAAGCAGGGCGG
---------GGATGGCGCGGGGAGGCGGCTGGAGCGGCGGCTGTCGCTGGGGGACTACAAGAAGGCGGTGTCGTGGTCCA
AGTACCTGGTGGCGCCGCCGGGCGCCAAGATCCGGGGCGGCGGCGAGGAGCTCTGGAGCGCCGACCTCTCCAAGCTCCAG
ATCCGGGCTCGCTTCGCCTCCGGCCGCCACAGCCGCGTCTACTCCGGCCGCTACGCCGGCCGCGAGGTCGCCATCAAGAT
GGTCAGCCAGCCCGAGGAGGACGCCGCGCTCGCCGCCGAGCTCGAGCGCCAGTTCGCCTCCGAGGTCGCGCTCCTCCTCC
GCCTCCGCCACCACAACATCCTCTCCGTACGTTCTACTACTTACTAAACT-----TTTCTACTTTCACTTTCTACCCTGT
TGTTGCCACTGGATTACTTTGATTAGATGAAATTATTAACATCTGCTTCAGTGATATGAATCTGAATTGAGC---AAATT
GGTTGTGTTGTTGGTGCCCATGCCTGAGGATTTGCCATCCCAACCGATCTTCACATTAAAGGTGGAAACTTTA-------
--------------------------------------------------------------------------------
---------------------GGCAGACAAGCTTCTT--TCCCCTATCAATTTTATTGTTCTTTTTTGAGGA--------
---AAAAAAACAGTGGTCCTTCCTCGGCGATTTCCGTTAAAGA--------------AACCATCTACACTTCTA--AATT
GTGAATTTCAGGTAGTAAGTACGTAATGTTTACGATAGTGAAACCCCAACTTTGTACCA-----GCTGGAACAAATCTTT
AGA----CATGATTGTTTGTTTTCTCCATGATAGTTCACTGTCTCCATCTTTACACTCATACAGTCGT------------
--------ACTGATTGCTGTCCATTCATAAAGTGCAGCTTTTAGGTGGTAATAGCAATTTGTACTTTGGCCCGACTTATG
TTTGTACAG---------------TCTGGACGACTTAGTGCATCAAAGCAACCTTCCAAATATTTTTAGTCTCTCTGTGG
TTTTGTATGGCGGTAAAACGGAATAATTTGGACAAGAGTGTCGTGGAAGGCTTGACGAGTTCACGACACCTACAGCTCTG
TACACGATAAGCCGATAACGT----TAGATACTTGGATTTTCTAATTAATTAAAGTGGGTGGTGGACCATGTAGGGCGTG
CCCACTCTTAAGTCT--TAACTGCTTTCAGATGCAGAGAAAAGCGCGTCTTATCGTGTAAGTGTTTAATAACGAGAATCG
ACCCGGAGAGTGATAGATAGGTGGATAGTTCATGTGCAGATAAATATCAATCCCGCTTTTCCCTTTGCTAAGTGAGGTCC
TGTCTCGCTCAGCCCCACAAGTCACATGGATAAAAGG-TTAGTTGACTGCATCAGATGGATTATTAAGCTAGAAAATTCA
AACGGTATTATGGTTGGTAGTTCTTCAGTTCAGACTGTTCCCTGTATCCGGTTTTACACACTGCCAACTT-GTGAATGTT
CTTGATTTCTCGCACGTTGCTTTTCTGTGAACCAAA-TTTACATGCTGGGCTGTGAACATATGTCAGTAATAAGGTTCAA
ACAATTTTGCTTATGATCTATGTTGGATCTGAAATGATTGGAATACTTACAGTTAACTGGCTGTATCAAAGCGTTTTGTC
AAGTCTCTGTTTTTTATGGAATTTGATGGTAATCTTCTTCTTTCGCAGTTCGTCGCAGCATGCAAGAAACCACCAGTATT
CTGTATCATCACTGAGTACATGGCAGGGGGTTCCCTTAGAAAGTATCTACACCAGCAAGAGCCTCATTCAGTCCCCATCG
AACTAGTTCTGAAACTAGCTCTAGACATTGCCCGTGGGATGAGCTACCTGCACTCACAGGGGATACTTCATAGAGACCTG
AAGTCCGAAAACGTGCTTCTGGGGGAGGATATGTCGGTCAAAGTGGCGGATTTCGGGATCTCATGTCTGGAGTCGCAGTG
CGGAAGCGGCAAGGGGTTTACGGGCACCTATCGGTGGATGGCTCCTGAAATGATCAAGGAGAAAACCCACACTAGAAAAG
TCGATGTGTACAGCTTTGGAATCGTCTTGTGGGAGATTTTAACTGCTTTGGTTCCATTCAGCGAGATGACACCTGAACAG
GCCGCTATAGCTGTCGCCCTCAAGGTATGTACGGATCCTTACACAACACTTCTTTATGTGTGGATGCTAGTTTCTCACTT
GTGGATTCTAAAGACTAATT-----------------------------GTTGTTCGCCT--------------------
---TGCTTCATAAGTATACGGAGCATGTTTGTTAGCTCAGATTTGGTCAATGGAGTATGTTTA-GTGCTCAGCTATCAAT
GTTAATTCATGACCGAATTTTGTGGAATTCTCCAAATTGTATTAATGTTTCGCAAGT-----------------ACCATA
GACAGACCTCAGAATTTGGGG-AAACATCAGTTCATTATGCTAATCAAGTTCAACATGCTTCAAATGTTCCGGCATTTTT
TAACCAGCTATTAATTTTTTCTGTGCAGAATGCGAGGCCACCGTTGCCTGCTTCGTGCCCTGTGGCCATGAGTCATCTGA
TATCTCAGTGCTGGGCGACAAACCCAGAAAGAAGGCCTCAGTTTGACGATATTGTCACGGTCCTCGAGGGCTACAAGGAA
GCGCTTGACAATGACCCATCCTTCTTCCTGTCATACATACCGCCTCCGACGCACCACCC------------GCATCAGCA
TCAGCAGAGCCTACTACGGTGCTTCCCTCGGGTCAAATCAATGCGCCGGTCCGCGTCTCTCAAAGCGTGATGTCTGCGGG
CGGTGCTCCTCCTTCATCCTCGCCATGTATAATATGCACCTTTCTCTGAGTTTCTTCCTCTCTATGTGCCGGCCCTCTAT
TATTGCGGCATCTAGGCTCGCTCCAATTTCGTTTTTTCTTTCTTCTTGGTTATTATGATTGCCATCATTGATGATGCCGT
CGAAGCCGGCCGTGCGTTTCTATCTAGATATGACAAAGCAGTTCTCCCTGCAGATTATCTATCGGCTGCCGTTTACTTGT
GACCGAGTGATGGAACCATGAACTAGCTAGCTTTTGTAATTGTAATTATAACTGAGCTCTTCATGAATCGTGTTCCTACT
CTTTTATCTGCTTCAGCAAGAATTACCATTATCTTAGCCTTACAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>SNPs
--S---S-SS-SSSSSSSSSSSSSSSS----------S-----S----S--------------S------S-S---S---
-S--------SS------------S-------SSS-SSS-----SS-S------------------------S-------
-SSSSSSSSSSSS--S---S----S--S--------------------------------S-S-----------------
--------------------------------------------------------------------------------
----------------------------SSS-----------SS------------SSSS-S------------------
--------------------------------------------------------------------------------
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-----------------------------SS--------S-----S----S-----------------------------
-------------------------S-----S---------------------SSSSSS---------------------
---S-----SS-S------SS---------------------S-SSSS--------------------------------
--------------------------------------------------------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------------------------S--------
----S--SSSSS---------SS---------S-----------------------------------------------
---SSSSSS---S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------SSSSS-------------------------
----------SSSSS-----------------------------------------------------S-----------
-----S--------------------------------------------------S----------S-----S------
---SSSSS----------------------------------------SSSSSSSSS------------S----------
----------------------------------SS-SS--S---------------S--S---S--SSSSSSSSSSSSS
SSS-----------------------------------------------------------------------S-----
---------------------SS------SS----------------------S------------S---S---------
--S----------S------------------------------------------------------SSSSSSSSSSSS
SSSSSSSS-------S-----------S----------------------------------------------------
----------------------------------S------S-----------S----------------S---S---SS
----S-------------S----------S----S---S-----------------------------------------
--S--------------S---SSSS----------------S---------------------------------S-S--
---------------SS-------------------------------------S-S-----------------------
-----------------------------------------------------S--------------------------
----------------------------------------------------S------S-----S------------S-
-----------S-S--------------------------------------------------------S---------
-----S----------S--------S------------------S-------------S---------------------
---------------S--------------S---------S---------------------------------------
-----------SS----------------------------------------------S--------------S-----
------S------------------------------------------------------------------------S
--------------------S-------S---------------------------------------------------
-----S--------------------------------------------------------S-----S-----------
-----------------------------------------------------------------S-------S------
----------------------S--------------------S------------------------------------
------------------------------------------------S----------------------------S--
---------------------SSS------------S-S---------S-------------------------------
--------------------------------------------------------------------------------
--SS-SS-S-----------S-----------------------------------------------------------
-----------------------------------------------------------------------SS-------
------------S-------------------------------------------------------------------
----------------------------------------------S--S---------S----S---------------
-----------------------------------------------------------S-S-SSSSSSSS---------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
-------------------------S-----S-------------------------------------S----------
------------------------------------------------------------S---------------S---
-------S------------------------S-----------------------------------------------
--S----S--S------S---S------------S------S---SSSSS-SSSSSSSS----S----S-S---------
--------S--SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------SS-------S--
---------------------------------------S-S------------------S------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2164
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----------------------------------------------------------------TTGGCTCCTTCCTCCT
GCTA----------------------------------------------------------------------------
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>reverse_3286
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-----TTGGGTTGGATCGACAAGGG-------------------------------------------------------
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>forward_3075
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---------------ACATCCTCTCCGTACGCTCA---------------------------------------------
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>reverse_4924
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-------------------------------------------CGCTTTGGTTCCATTCAGCG-----------------
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>forward_4640
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------------------------------------------------------------GCCTCATTCAGTCCCCATCC
--------------------------------------------------------------------------------
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>reverse_6408
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-------CCCTACAACTTCAGGCCAGG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
