>input_sequence_27050
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------------------------------------------------------------------------ATGGCGCT
GGAGACGCGGAAGCTCTACGTCGGCGGCCTCCCGCCGTCGGCGCAGCAGGAAGAACTCCAGGAGCACTTCAGCCGCTACG
GCGAGGTGCTGCGCGTCCGTGTCGTCCGCGACTGGGAGACGGGCCAGTGCCGCGGCTTCGCGTTCGTCGAGTTTGCCGAC
GACGAGGGCCCGCGCGCCGCGCTTCAGGAGAAGGAGAAGGACAACCATGTCTTCGGCGACCGCACGGTGAGGCACTCTCT
CTTCTTGTTTGCAAACCC---------CCCGATTAAATCTGTGGTAGCGATTGCTGTAGGCGTGTCTTAGGGCTTTGCGA
TTGAATGTGGC------------------------------------------------------------CTGCTTACC
ATCAGGTTTAATTGTGAAATAAAGGCGTTGCTGTCTTTTTTAATTTTCTATTAAAGATTATTGATTGTGTCGATAATCTA
CAACT-GAGCTGCTTGAATTCCTTACACTGGAGTAAGATACATCACAGATTCAGATGTTCTTAGAGAATTTTGCAACTTC
CATGTACTGTCTTAAGGTAGAAATATTGCTAGATGCTTGTACTGTACAAAGAAATACGTTTCTTGTCGTATATTTATTTA
GTTTAATGTT-AGCTTCTTCAGATCTTCTGAGATGTTTTTATTGTATTTTCTACAAAAGGTTCCACTGATTTTTTT-CTT
CTAGTCTGGTCTGTTTTTTGTTTTGTTTTGTTTCTACCTCAGATATCTGAACTATGTGTTTGATTG--------------
CCTATTTGGGTAGGTGGATGTTAAACGAGCTCGGACCAGGCCAATGCGATACCAAAATGAGCAATCATTCTACCAATACG
CTTTAAATCAG------------AGCCCAATTCAGAGCCCAATTCAGAGCCCAGTTCACAACCAGTGGTACACTCAGTCT
TCTAGTAACAACTCATATGCTGGTAATGGTCATAGAACTTGTGATCCAAACAAGGTCTTTGTTGGTGGGCTACGAGGTAA
TGTTACCAAGGAGCACCTCCAGAGCTATTTTGAGAAGTTTGGTAGAATAACAGATGTTGTTGTGATACGTGAGGGGGCTA
GTCAGAGATCAAGAGGCTTTGGTTTCATTACATTTGATTCAGAGGAGGCTATGGTAAATGTCTTGGAGAGTAAATTCCAT
GACTTGAACGGTACAAAGGTTGAAACTAAGAGAGCTATTCCCAAGGGTCATAGCTACTACCAGGATAGGCTACAATATAA
TCCTATGATATGGAATGGCAACAATCCTCCCATTGGCTTTGCTGGAGCATACCCACCTCACATGCAGCATATTGTTAATA
ATCATTATGTGATGCCTATGCCACAATACATGTGCTTACC------AGAGTATGTCTACATGATGAATGGAGGAGTCCCC
TTGACAAGGCAAGGTTCACTCAATACAGGCTACGGAACACAAATTGGATATGGTTATGATCATGTGAATACAAATCGTTT
TGGTGCTCAACTTGGGGAAGCTAAAAGTGATAACAAATTGATTGAAGACATAACAGAGCAACAA----------------
--GTGGACCTACCAGCTA------------CCAGGCAAGAAACTTTGGGCATGGAGTAAGAATCTGAACTTTTGTTTCAT
ATTGTTCCGGACGAGTCTTTGAATTACTGTAATTGACATGTTTTGATATTAAATAATCAATCTGTCAGTTTCTGTTACAT
TATCTGTTATTTTAATTCTTGCACCTATAGCCAAGTATTTTTTAGTAGTAAATTATGCACAAAAGAAATTTAGTAAATTA
TAAGGTATGCCCAAAAGAGTTTTAGATTTT-----------------------------------------------AGT
AGTAAGTGCAAACGAAGTAACCATTAAACATTGATGAAACACTTGCTGAAGGCTTGACCTATTTATATCAAGTTATTATT
TCCCGTATTCATT-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTCTAACCTATACAAGGTATATCCGAAT
GGAATGAATGTTTTTTATATC-----------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------GTACTAATCTGAACTTCTATAGATGTGATA-
ACCATTATCTCTTA-------CCCAAATCTTTTCTCACTGGTTAATCAATAATAT-TAACAACTTGGTAACATACTTGTT
ATGCATCATTTGGTCTTCTCTTATCTTT-TTAACTGCTTGATCCAACAGTCAATTTGTATAGTGATCCTGTGTAATTAAT
AGTCTTGATTTTGTTTGATTGAGAGAGAC---------------------------------------------------
-------------------------------------CTGGCTGCATCACAATTTCCAGGAGCGGAGCTCATGGCACAAC
ACACTAAAAAACATCAACAAGTATTCGATAATATTAGCCGAGCCATTTGTTTAGAAATAAAAGCCCAGATTGCCATTTGT
TTATAAGTTTGTATTTATACTGATGCTGAGATAAATATTTGCTAATTCAATAACAGAAATCCATGCTAAGGAATGATAAT
AGCTACTCATAAT-TGTAGGCATCCTTTGGTGAACTAATATACTGATAATGACACCGTGT-TGCCGTTTATTGAAAACTG
CTA---------TACTTTGCAGCTATGTGCCTTATACGTGCACACTGTCTAGCAAGATATCATTCATGAATACTATCAAT
TGTAGATTTAAATTTTGGCTGGTGATGGTTGGGTCCTATAAGGATGGATGCCATAGCAATGAATCTGATTATTATTTTGT
CAATCAATTTTCCTGTGAC--CATGAATCTGAATTAT-GAGAAAAGCGGGGCACACTTGTCTGTTGTCAATAGTCTTTGT
TGCTTTGATTATTTTCTGTCTTCTATGCAAAAATACGTTTGCTTAATCAATGCTATCT----------------------
--------------------------------------------------------------------------------
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AGTATTTTGAAATTCCAAGTACTTGTCCCCAGGA------------------TCTGCTTTCCTTATTTGTATCCAGTTTG
TCGTGTTTCACTCAAATAGTAATGTTTAATA----CT--TATACATATCCTATCAGCTTTCTGGTGGTAATAATAGTATT
TATCTAATTTACATGTGCAGTGACCAGGCTACTGTTACAACATTGTAA--------------------------------
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-------------------------
>chr5B_1_TraesCS5B01G410100
TGCCAGATAGACATCTAAACTTCTAAGTTAGGATTAATTGCGACACTATTAATTAGTTGTCCCCTCCCCCTCCACCCACC
AACACACGCATGCACAGTCCAAGTGCTCTACCTCTTTTGGATTAGTTTGAATTGCTTACCACATATGTCACGTGGTCAAG
TGCTCTACCTCTTTATTAGTCATGCATGCGCGTGTGAGAGGCTTAGGGGAGTTCGAAGGATTAACATTACTCCTGACGTG
CCTTAGTAAAGTAGAATCGGCAGGCCGACCCTTTAAACTCGACCAAAGGGGGTAGTACAAAGTTATTTGGGTTAATATTA
GCTCGTATCTAACTTATGTTGCAGCGAACTACACATAACTTAGATGGTTATAAGTTCCAAATGGTAAAATCAACGCACCG
GGGTTCATTAAGAGATGACATTACCGTCAACTATGGGTGGCGACTTTGTTAAGGTCGAGATTTGCTGATTTAGTCTCTCG
GAAGTCTTTTATGAAAAG----------AAATGTTCTTGTGCATCCCCGACGATGATTGTATGTTTGTGTTC----AAGC
GCTTGCGTTATACCAAGTTTTTCTGAAAAAAAA---ACATGATGCCCCTTCTATCGGATACATTGCGGGTCCCATTTGTC
AGCCAAACAGAGTCGTCAAATTCAGTGGAAGCCAACATAGTAGAGAGTCCTGCAAGAAAAAACATACTAGAGTCCACGCG
CGGTCGCTGCAGTTTGCAGTTGGAGGCCGAGCCGGAGACGAAACCTCGTCCAGTCCGCCTTCCCATCGCAAGTCCGCACG
CAACAAGAAACAAA------------CTACTCCGCTTCCAATCTGGGCCGTCCAGTCCCC-TCCGCAACTTCTTAAACCC
CGGCGAGCCCAACCGAACCCCACCCCGGACCCAAACAAACAACCCTAGCCTTCCGCGTCGCCC-ACGCGCGCCTCGCCTC
CGCCGCTTTTCTCTCCGCCCCGGAAACAGACTCGCCGCCTCCT-ATCCCATTGCCGTCCTCCTCGCCGGCCGATGGCGCT
GGAGACGCGGAAGCTCTACGTCGGCGGCCTCCCGCCGTCGGCGCAGCAGGAAGAACTCCAGGAGCACTTCAGCCGCTACG
GCGAGGTGCTGCGCGTCCGTGTCGTCCGCGACTGGGAGACGGGCCAGTGCCGCGGCTTCGCGTTCGTCGAGTTTGCCGAC
GACGAGGGCCCGCGCGCCGCGCTTCAGGAGAAGGAGAAGGACAACCATGTCTTCGGCGACCGCACGGTGAGGCACTCTCT
CTTCTTGTTTGCAAACCC---------CCCGATTAAATCTGTGGTAGCGATTGCTGTAGGCGTGTCTTAGGGCTTTGCGA
TTGAATGTGGC------------------------------------------------------------CTGCTTACC
ATCAGGTTTAATTGTGAAATAAAGGCGTTGCTGTCTTTTTTAATTTTCTATTAAAGATTATTGATTGTGTCGATAATCTA
CAACT-GAGCTGCTTGAATTCCTTACACTGGAGTAAGATACATCACAGATTCAGATGTTCTTAGAGAATTTTGCAACTTC
CATGTACTGTCTTAAGGTAGAAATATTGCTAGATGCTTGTACTGTACAAAGAAATACGTTTCTTGTCGTATATTTATTTA
GTTTAATGTT-AGCTTCTTCAGATCTTCTGAGATGTTTTTATTGTATTTTCTACAAAAGGTTCCACTGATTTTTTT-CTT
CTAGTCTGGTCTGTTTTTTGTTTTGTTTTGTTTCTACCTCAGATATCTGAACTATGTGTTTGATTG--------------
CCTATTTGGGTAGGTGGATGTTAAACGAGCTCGGACCAGGCCAATGCGATACCAAAATGAGCAATCATTCTACCAATACG
CTTTAAATCAGAGCCCAATTCAGAG------------CCCAATTCAGAGCCCAGTTCACAACCAGTGGTACACTCAGTCT
TCTAGTAACAACTCATATGCTGGTAATGGTCATAGAACTTGTGATCCAAACAAGGTCTTTGTTGGTGGGCTACGAGGTAA
TGTTACCAAGGAGCACCTCCAGAGCTATTTTGAGAAGTTTGGTAGAATAACAGATGTTGTTGTGATACGTGAGGGGGCTA
GTCAGAGATCAAGAGGCTTTGGTTTCATTACATTTGATTCAGAGGAGGCTATGGTAAATGTCTTGGAGAGTAAATTCCAT
GACTTGAACGGTACAAAGGTTGAAACTAAGAGAGCTATTCCCAAGGGTCATAGCTACTACCAGGATAGGCTACAATATAA
TCCTATGATATGGAATGGCAACAATCCTCCCATTGGCTTTGCTGGAGCATACCCACCTCACATGCAGCATATTGTTAATA
ATCATTATGTGATGCCTATGCCACAATACATGTGCTTACC------AGAGTATGTCTACATGATGAATGGAGGAGTCCCC
TTGACAAGGCAAGGTTCACTCAATACAGGCTACGGAACACAAATTGGATATGGTTATGATCATGTGAATACAAATCGTTT
TGGTGCTCAACTTGGGGAAGCTAAAAGTGATAACAAATTGATTGAAGACATAACAGAGCAACAA----------------
--GTGGACCTACCAGCTA------------CCAGGCAAGAAACTTTGGGCATGGAGTAAGAATCTGAACTTTTGTTTCAT
ATTGTTCCGGACGAGTCTTTGAATTACTGTAATTGACATGTTTTGATATTAAATAATCAATCTGTCAGTTTCTGTTACAT
TATCTGTTATTTTAATTCTTGCACCTATAGCCAAGTATTTTTTAGTAGTAAATTATGCACAAAAGAAATTTAGTAAATTA
TAAGGTATGCCCAAAAGAGTTTTAGATTTT-----------------------------------------------AGT
AGTAAGTGCAAACGAAGTAACCATTAAACATTGATGAAACACTTGCTGAAGGCTTGACCTATTTATATCAAGTTATTATT
TCCCGTATTCATT-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTCTAACCTATACAAGGTATATCCGAAT
GGAATGAATGTTTTTTATATC-----------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------GTACTAATCTGAACTTCTATAGATGTGATA-
ACCATTATCTCTTA-------CCCAAATCTTTTCTCACTGGTTAATCAATAATAT-TAACAACTTGGTAACATACTTGTT
ATGCATCATTTGGTCTTCTCTTATCTTT-TTAACTGCTTGATCCAACAGTCAATTTGTATAGTGATCCTGTGTAATTAAT
AGTCTTGATTTTGTTTGATTGAGAGAGAC---------------------------------------------------
-------------------------------------CTGGCTGCATCACAATTTCCAGGAGCGGAGCTCATGGCACAAC
ACACTAAAAAACATCAACAAGTATTCGATAATATTAGCCGAGCCATTTGTTTAGAAATAAAAGCCCAGATTGCCATTTGT
TTATAAGTTTGTATTTATACTGATGCTGAGATAAATATTTGCTAATTCAATAACAGAAATCCATGCTAAGGAATGATAAT
AGCTACTCATAAT-TGTAGGCATCCTTTGGTGAACTAATATACTGATAATGACACCGTGT-TGCCGTTTATTGAAAACTG
CTA---------TACTTTGCAGCTATGTGCCTTATACGTGCACACTGTCTAGCAAGATATCATTCATGAATACTATCAAT
TGTAGATTTAAATTTTGGCTGGTGATGGTTGGGTCCTATAAGGATGGATGCCATAGCAATGAATCTGATTATTATTTTGT
CAATCAATTTTCCTGTGAC--CATGAATCTGAATTAT-GAGAAAAGCGGGGCACACTTGTCTGTTGTCAATAGTCTTTGT
TGCTTTGATTATTTTCTGTCTTCTATGCAAAAATACGTTTGCTTAATCAATGCTATCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AGTATTTTGAAATTCCAAGTACTTGTCCCCAGGA------------------TCTGCTTTCCTTATTTGTATCCAGTTTG
TCGTGTTTCACTCAAATAGTAATGTTTAATA----CT--TATACATATCCTATCAGCTTTCTGGTGGTAATAATAGTATT
TATCTAATTTACATGTGCAGTGACCAGGCTACTGTTACAACATTGTAACGATGGACAGCAACTTGTTATCTGGGAACTCG
GCAACTGTGAAGAACTTGAGATGAAATTCTTTGGTGACAATACATGTGTGGAAATCCTGCG-TTACTTTGGACCTTGTGT
ACATTGCAACCGGCAATAGACCCTCCCGCACCATGTTTAAACTCTATGTTACTGCTGTTCCATTTTTTTTGGTGACGAAC
CTGTTCTGAAATTGGTCTGGGTTACACATGTTACCTGTGCGTGGTTATCTGCTGAAGTTTCATGTATGGTTATTTTGTTA
CGGTTTCTTTAGCTAGTTGTTTATGAGCTTCTTGCGCTGAGTGGTGACATCTGACCTTTTAGTCAGATGCGTAGACAATA
TCTGAGTGATATCAGTTCAGGTCGGATTGGGAGAGTAATGTTTCAGTATACTAGGACTCTGGGAGTGGATGTAAGGTCCA
GTTCTTTTGGCGGCTGCTCACG---AAGTTGCCCCACCTCTAGCTTCCTTTTACTAAAAAAAATC-------------GG
TTTCTGAACTAGTTAGAGATAACTAGCTTAGAAGCCCCAAGCAATTAAGGGAACTTCTTATGAGAGAAGCTAGGTAGGGA
ATGGCTTATGGGAGAAGCCAAAGAGCTGGGTCTAAATGGGAAATCTGTAGTTAGATCTGCTATTCATATACCTACTTATC
GTTCAGGGTTTGACAACTTTCATTGGCAAAAAGAAGAGGATGTTGTAACTTGTTCATCTCAAGCCACCGACTCAATTCAA
TCGCGCTGCCCATCCAGCCCGATCCCCTATCTTCCTCTCCTCATGTTCAGCGTTTCCAACACCTCAGCATTGGCTGCCTC
GTCTTCCTCCTCGCCCTTGCATTTTTACAGCAGAAAAAATTCTCACATTCCTGAACGGTAACTCGAAATTCAGGTACTGC
TCAATTTCAGCACCTAGAAGTCCTCTAATTACCAATCGCGCAAGCACTCTAGTACCAGAGCTGAGGCCACATATGAAAGC
AGAAGAACTGTCTGATTGATAATGC
>chr5A_318
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTA
GCTCGTACCTAACTTACACTGCAGCGAATTACACATAATTTAGATGGTTATAAGTTCTTAATGGTAAAATCAGCACAACG
GGGTTCACTAAGAGATGACATCACTGTCAACTAAGGGTGGTGACA---TTAATGTCGAGATTTGCTGATTCAATCTCTCG
GAGATCTTTTTATATTAAAAGAATTGTCAAATGTTCGTGTGCATTCTTATTGTAC---------GTGTGTGTTTGTAAGC
GCTTGCGCG-TACCACGTTTCTCTGAAAAAAAAGAAACATCATGCCCCTTCTGTCGGACAAATTGTGGGTCCCATTTGTC
AGCCAAACAGAGT--------TCAGTGGAAGCCAACATACAAGAGTCCTGGGA---AAAAAACATACAAGAGTCCACGCG
TGGTGGCTGCGGTTTGCAGTTGGAGGCCGAGCCGGAGACGAGACCTCGTCCAGTCCGCCTTCCCATCGCA-GTCCGCACG
CAACAAGAAACAAACCAGTTCCAAATCTACTCCGCTTCCAATCTGGGCCGTCCAGTCCCCGTCCGCAACTTCTTAAACCC
CGGCGAGCCCAACCGAACCCCACCCCGGACCCAAACAAACAACCCTAGCCTTCCGCGTCGCCC-ACGCGCGCCTCGCCTC
CGCCGCTTTTCTCTCCGCCCCGAAAACAGACTCGCCGCCCCCCCATCCCATTGCCGTCCTCCTCGCCGGCCGATGGCGCT
GGAGACGCGGAAGCTCTACGTCGGCGGCCTCCTGCCGTCGGCGCAGCAGGAAGAACTCAAGGAGCACTTCAGCCGCTACG
GCGAGGTGCTGTGCGTCCGGGTCGTGCGAGACTGGGAGTCGGACCAGTGCCGCGGCTTCGCGTTCGTCGAGTTTGCCGAC
GACGAGGGCCCGCGCGCCGCGCTCCACGAGAAGGAGAAGGCAAACCACGTTTTCGGCGGCCGCACGGTGAGACTCCTCCT
CTTTTTTTTTTCTTTTTTTTTGAAACGCTCGACTGAATCTGTGGTGGCGACTGCTGTAGGCGTTGTTAGGGCATTCAAAA
CTTGTTTATTAATCATAACTTATTTGGGTATCGTCGATTCGTTTAGTAAATTAGATTTGTTCTGGTTAATGCTGTTTACC
GTCAGCTTTAATTCTTAAAGAAAGGCATTGCTTTCTTTCTTAATTTCCTGTCTAGAGTG--TTATCCTGTAGATAATCTG
TAACAAGAGTTGCTTGAATTCCTTTTGGTTATGAACACTAGAGTACACTTCAAATGTCTTCC------------------
----------------GCATAATTATCGCTAGATACAACGCCACTTCAAATGTCTTCCGCATAAT---------------
--------------------------------------------------------------------------------
-------------T-----------TTTTGTTTGTTAGTCATATATCTAAACTATGTTTTTTTTTTTTTGCCTATTTTGC
C----------AGGTGGATGTTAAACGAGCTCGAATCAGGCCAATGCGGTATGAAAATGATTCATCATTCTACCAACACA
CTTCAAATCAT------------AG------------CCCAATTCAGAGCCCAGTTCACAACCAGTGGTACACTCAGTCT
TCTAGTAATAACTCATATGTTGGTAATGGTCATAGAAGCTATGATGCAAAAAAGGTTTTTGTTGGTGGTCTACGAGGTAA
CATCACCAAAGAGCACCTCCAGAGCTATTTTGAGAAGTTCGGTACTATAACAGACGTTGTTGTGATACGTGAGGGGGCTA
CTCAGAAATCACGAGGCTTTGGTTTCATTACATTTGATTCAGAGGAGGCAATGGCAAAGGTCTTGGAGAGTAAATTCCAT
GATTTGAATGGAACAAAAGTTGAAACTAAGATTGCCATTCCTAAGGATCATAGCTACTATCAGGACGGGCGACAGTATGG
TCCAATGATATGGGATGGCAACAATTCTCCCATTGGCTATGCTGGAGTATACCCACCTCAAATGCAATATGTTATTAATA
ATCACTATATGATACCTATACCACAATATATGTATTCACCAGCTGGAGAGTATGGCTACATGATGAATGGAGGAGGCCCC
TTGACAAGGCAGGGTCCACTCTATACAGGCTATCCAACACCAGTTGGATATGGATATAATTATATGAATACAAATCGTTT
TGGTGCTCAGATTGTGGATTCTAGAAGTGGTAACAAAATGATTGAAGACATAACAGAGCAACAACAAGTGGAGCAACAAC
AAGTGGATCTACCTGGTACCAATAATATTTCCAAGCAAGAAACTTCAGGCATTGAGTACGAATCTGAATCTTTAACATAT
TGTTATTTGCATTATCTAATACCTTTTTCTCGTCAT--------------------------------------------
-------------------------TATAGCCAAATATTTTTTTGGTAGTAAAT--------------------------
TAAGGTACACACAAAATGATTTTAGATTTTGAATATTCCATAACTTTGTAATTGCTCCTCGTTCAAATTATTACCTTAGT
GGTAAGTGCAAAAGGAGGAATCATTAAACATTGATGAGACA-----------CTAGACTTATTTATATCAAATTAATATT
TCCTGTATTTATTCTAATCTATGAAGGGGAGCCTTGGCGCAGTGGTAAAGCTGCTGCCTTGTGACCATGAGGTCACGGGT
TCAAGTCCTGGAAACAGCCTCTTACAGAAATGTAGGGAAAGGCTGCGTACAATAGACCCAAAGTGGTCGGACCCTTCCCC
AGACCCTGCGCAAGCGGGAGCTACATGCACTGGGGCTGCCCTTTTTTTTTTATTCTAATCTATACATGGTATATCTGAAT
GGAATGAACCCATAGCTGATGATAGAACTAGAATAGATATCTTTTGTTTTCTACTCACGCGAGCCCATATCCTTTCTTTT
TTATCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACTAATCTGAACTTCTATAAATGTGTTAG
ACCATTATTTCTTATATTCACCCAAAATACTTTCTTACTAGTTCATCAATCTTATCTAACAGCCTGTTGCCATACT--TT
CTGCATTGTTTAGTCTTCTTTTGTCCCT-CTAACCGCTTGATCCAATAGTTAGTCTCTATGTATAG------------AT
AGTCTTGATTTGGTTTGATTGAGGCAATTATGATAATGATTCTCCATAATACGCTCCAGACCATAATAACTCAATGCATA
CTGACTCGGCTAATCTCCTAATGCATGCAGAGACATACTAGCTGCAACACAATTTGTAGGAGCGGAGCTCATGGCACAAC
ACACTAAAAAACATCAACAAGTGTTTTTATATTAGCT---AGCCATTTGTTTAGAAATAAAAACCCAAATTGCTACTTGT
TTATAAGTTTGTATTTATTCAAAGGCTGAGATAAATATACGCTAATTCAGTAACAGAAATCCAT-CTAAGGAATGAGAAT
ATGTGCTCCATTAATGAAGGTATCATTTGGTGAACTAATATACTGATAATGAGATCGTGGCTGCTGTTTACTGAAA----
-----TGCATGTTATTTTGCAGCTACATATGTTATACATGCACACTGACTAGTAAAACATCATTCATGAATACCATCAAT
TGTAGATGTAGATTTCGGATGATGCCAGTTGGGCCCTGTTAGGATGGATGCCATAACAATGAATCTGATTGTTATTTTAT
CAACCAATTTTCCTTTGTGTTCATGTATCTGAATTATGGACAAAAGCAGAACACACTTATCAGTTGTC-ATAGTCCTTGT
TGCTTTGATTATTTTCTGTTTTATGTGCAAA--TACATTGGCTTAATCAATGATATCTAGTACTCCCTCCGTTCCTTGAT
ATAAGGTGTATAGATTTTTGAGAAAACATCCAAAATATAAGGTGTATTGCGTTGAACAACTTGTTTGGATAATTTTTTTT
AGGGATTTGATTACATTTCCTTATATTAGGCAAACTCCTCTATTTTCTCATGTCAATTAGTCAAGTGTAATCTCGCCCAA
AACTTGTGAAATTTACCCTCCACGTGCGTTCTTTAATTTCCGTGCCAAAAACTATACACCCTATATTCAGAAACGGAGGG
AGTATTTTGAAATTCCAAGTCTTTGTCCCCAGGAAGTCAGAAATTAGCTGTATCTACTCTCCTTATTTGTATTCAGTTTG
CCGTGTTTCACTCCAATAGTAATCTTTAATTAATTCT--TCTACGTATCTTATCAGTTTGCGT-TGGTAATAATA-TATT
TATCTAATGTACATGTGCAGTGACCAGGCTACTGTTACAACATTGTAATGATGGACAGCAACTTGTTATCTGGGAACTCG
GCAACTGTGAAGAACTTGAGATGAAATTCTTTGGTGACAATACATGTGTGGAAACCCTGCGCCTAGTTTGGACCTTGTGT
ACATTGCAACCGGCAATAGACCCTCCTGTACCATGTTTAAACTCTATGTTACTGCCGTTACATTTTTCGTGGTGATGAAC
CTGTTTTGGAATTTGTCTGGGTTACACATGTTACCTGTGCGTGGTTATCTGCTGAAGTTTCATGCATGGTTATTTTGTTA
CAGTTTTTTTAGC-AGTTGTTTATGAGCTTCGTGCGCTGAGTGGTGACATCTGACATTTTAGTCAGATGCATAGGCAATA
TTTGAGTGCTATCAGTTTAGGTTGGATTGGGAAAGTAATGTTTCAGTATACTAGGACGCTTGGAGTGGATGTAAGGTGCA
GTTCTTTCGGCGGCTTCTCACTAATAAGTCGCCCCACCTCTACCTTCTCCTATAATCCTTTTCCTACT--TTTTTTCTGG
CTTCTGAACTAGTTAGCGATAACTAGCTTAGAAGCCCGAAACAATTAAGGGAACGGCTTATGAGAGAAGCTAGGGAGGGG
GTGGCTTATAAAAGAAACCAAAGAACTGTGTCTAAATAGGAAATTTGTAGTTAGATCTCTTATCCATATA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr5D_410
AAGATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ATGACATAACTGTCAACTACGGGTGGTGAC----TTAATGTCGAGATTTGCTGATTCAGTCTCTCG
AGGTCTTTTTATGAAAAG----------AAATGTTCACGTGCATTCATAACGATGATTGTACGTGTGTGTGTTCGTAAGC
GCTTGCGTTATACCATGTTTTTCTGAAGAAAAGAAACCATGGTGCCCCTTCTGTGGGACACGTTGCGGGTCCCATTTGTC
AGCCAAACAGAGTTGTCAAATTCAGTGGAAGTCAACATACAAGAGTCCTGA-A---AAAAAACATTCAAGAGTCCTCGCG
TGGTCGCTGCAGTTT----------GCCGAGCCGGAGACGAGACCTCGTCCAGTCCGCCTTCCTATCGCA-GTCCGGACG
CAACAAGAAACAAACCAGTTCCAAATCTACTCCGCTTCCAATCTGGGCCGTCCAGTCCCC-TCCGCAACTTCTTAAACCC
CGGCGAGCCCAACCGAACCCCGCCCCGGACCCAAACAAACAACCCTAGCCTTCCGCGTCGCCCTACGCGCGCCTCGCCTC
CGCCGCTTTTCTCTCCGCCCCGGAAACAGACTCGCCGCCTCCC-ATCCCATTGCCGTCCTCCTCGCCGGCCGATGGCGCT
GGAGACGCGGAAGCTCTACGTCGGCGGCCTCCCGCCGTCGGCGCAACAGGAAGAACTCCAGGAGCACTTCGGCCGCTACG
GCGAGGTGCTGCGCGTCCGTGTCGTCCGCGACTGGGAGACGGGCCAGTGCCGCGGCTTCGCGTTCGTCGAGTTTGCCGAC
GACGAGGGCCCGCGCGCCGCGCTCCAGGAGAAGGAGAAGGCCAACCATGTCTTCGGCGACCGCACGGTGAGGCACTTTCT
CTTCTTGTTTGCAAACCC---------CTCGATTAAATCTGTGGTAGCGATTGCTGTAGGCGTGTTTTAGGGCTTTGCGA
TTGAATGTGGC------------------------------------------------------------TTGCTTACC
AACAGGTTTAATTGTGAAATAAAGGCGTTGCTGTCTTTTTTAATTTTCTATTAAAGATTATTGATTGTGTCGA--ATCTA
CAACT-GAGCTGCTTGAATTCATTACATTGGAGTAAGATACATCACAGATTCAGATGTTCTTAGAGAATTTTGCAACTTC
CATGTACTGTCTTAAGGTAGAATTATTGCTAGATGCTTGTGCTGTACAAAGAAATACGTTCCTTGTGGTATATTTATTTA
GTTTAATGTTAAGCTTTTTCAGATCTTCTGAGATGTTTTTATTGTATTTTTGACAAAAGGTTCCACTGATTTTTTTTCTT
CTAGTAAGGTCTGT-----------TTTTTTTTCTAACTCAGATATCTGAACTATGTGTTTGATTG--------------
C----------AGGTGGATGTTAAACGAGCTCGAACCAGGCCAATGCGATACCAAAATGAGCAATCATTCTACCAATACG
CTTTAAATCAG------------AG------------CCCAATTCAGAGCCCAGTTCACAACCAGTGGTACACTCAGTCT
TCTAGTAACAACTCATATGCTGGTAATGGTCATAGAAGTTGTGATCCAAACAAGGTCTTTGTTGGTGGGCTACGAGGTAA
TGTTACCAAGGAGCACCTCCAGAGCTATTTTGAGAAGTTTGGCAGAATAACAGATGTTGTTGTGATACGTGAGGGGGCTA
GTCAGAGATCACGAGGCTTTGGTTTCATTACATTTGATTCAGAGGAGGCTATGGTAAATGTCTTGGAGAGTAAATTCCAT
GATTTGAACGGTACAAAGGTTGAAACTAAGAGAGCTATTCCCAAGGGTCATAGCTACTACCAGGATACGCGACAATATAA
TCCTATGATATGGGATGGCAACAATCCTCCCATTGGCTTTGCTGGAGCATACCCACCTCACATGCAGCATATTGTTAATA
ATCATTATGTGATGCCTATGCCACAATACATGTGCTTACC------AGAGTATGTCTACATGATGAATGGAGGAGTCCCC
TTGACAAGGCAAGGTTCACTCTATACAGGCTATGGAAC---AATTGGGTATGGGTATGATCACGTGAATACAAATCGTTT
TGGTGCTCAACTTGGGGAAGCTAAAAGTGATAACAAACTGATTGAAGACATAAAAGAGCAACAA----------------
--GTGGACCTACCAGCTA------------CCAGGCAAGAAACTTTGGGCATGGAGTAAGAATCTGAACTTTTATTTCAT
ATTGTTTTGGACGAGTCTTTGAATTACTGTAATTGACATGTTTTGATATTAAATAATCAATCTGTCATTTGGACGAGTCA
TGGAGT--------------------------AAGTATTTTTTTAGTAAAAATTATGCACAAAAGAATTTTAGTAAATTA
TAAGGTATGCACAAAAGAGTTTTAGATCTT-----------------------------------------------AGT
GTTAAGTGCAAACGAAGTAACCATTAAACATTGATGAAACACTCGCTGAAGGCTTGACATATTTATAT-AAGTTAATATT
TCCCGTATTCATT-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTCTAACCTACACAAGGTATATCCGAAT
GGAATGAATGTTTTTTGTATC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GTACTAATCTGAACTTA-ATAAATGTGTTA-
GCCATTATCTCTTA-------CCAAAATCTTTTCTCACTGGTTAATCAATAATAT-TAACAACTTGTTGACATACTTGTT
ATGCATCATTTGGTCTTCTCTTATCTGTCTTAACTGCTTCATCCAACAGTCAATTTGTATAGTGATCCTGTGTAATTAAT
AGTCTTGATTGTGTTTGATTGAGACAGAC---------------------------------------------------
-------------------------------------CTGGCTGCATCACAATTTGCAGGAGCGGAGCTCATGGCACAAC
ACACTAAAAAACATCAACAAGTATTCGATTAGCTAAGCC---------GTTTAGAAATAAAATCCCAGATTGCTATTTGT
TTATAAGTTTGTATTTATACTGATGCTGAGATAAATATTTGCCAATTCAATAACAGAAATCCATGCTAAGGAATGATAAT
AGCTACTCATAAT-TGTAGGCATCCTTTGGTGAACTAATATACTGATAATGAGACCATGT-TGCCGTATTGAAACTGCTA
TACTTTGCATGTTACTTTGCAGCTATGTGCCTTGTACGTGCACACTGACTAGCAAGATATCATTCATGAATACTATCAAT
TGTAGATTTAAATTTTGGCTGATGATGGTTGGGTACTATAAGGATGGATGCCATAACAATGAATCTGATTGTTATTTTGT
CAATCAATTTTCCTGTGAC--CATGAATCTAAATTAT-GAGAAAAGCGGGGCACACTTGTCTGTTGTCAATAGTCTTTGT
TGCTTTGATTATTTTCTGTCTTCTATGCAAA--TACGTTTGCTTAATCAATGCTATCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AGTATTTTGAAATTCCAAGTACTTGTCCCCAGGA------------------TCTGCTCTCCTTATTTGTATCCAGTTTG
CCGTGTTTCACTCAAATAGTAATGTTTAATA----CTTATATACATATCCTATCAGCTTTCTGGTGGTAATAATAGTATT
TATCTAATTTACATGTGCAGTGACCAGGCTACTGTTACAACATTGTAACGATGGACAGCAACTTGTTATCTGGGAACTCG
GCAACTGTGAAGAACTTGAGATGAAATTCTTTGGTGACAATACATGTGTGGAAATCCTGCGCTTACTTTGGACCTTGTGT
ACATTGCAACCGGCAATAGACCCTCCTGTACCATGTTTAAACTCTATGTTACTGCTGTTACATTTTTTGTGGTGACGAAC
CTGTTTTGGAATTGGTCTGGGTTACACATGTTACCTGTGCGTGGTTATCTGCTGAGGTTTCATGCATGGTTATTTTGTTA
CAGTTTTTTTTTAGCTA-GTTTGTGAGCTTCATGCGCTGAGTGGTGACATCTGACGTTTTAGTCAGATGCGTAGGCAATA
TTTGAGTGCTATCAGTTTAGGTTGGATTGGGAAAGTAATGTTTCAGTATATTAGGACTCTGGGAGTGGATGTAAGGTGCA
GTTCTTTCGGCGGCTTCTCACTAATAAGTCGCCCCACCTCTAGCTTCTCGTATAATCCTTTTCCTATTTCTTTTTTCTGG
CTTCTGAACTAGTTTGTGATAATTAGCTTAGAAGCCGGAAATAATTAAGGGAATGGCTTATGAGAGAAGCTAGGGAGGGG
CTGGCTTATGAAAGAAACCAAAGAACTGTGTCTAAATGGGAAATCTGTAGTTAGATCTCTTATTCATATA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-------S--------SSS---------S---------S------------------SS-------------S-S--S--
-------S-------------S--S--------S------S---SSSS----S-----------------S---------
--SS--------------------------------S-------S-SSS------------S--S-----SS--------
---------------S------------------------------------S-----S---------------------
-------------S-------------------------SS----SSSSSS-SSSS-----------S------------
S----------------------------------------S----------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S----------------S-----------------------------------S---
----------------------------S------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
----------------------S-----------------S-------------------S-----S-------------
----------------S---------------------------------SS----------------------------
-----SS-------SSSSSSSSSSS-----------S-------------------------------------------
-SSSSSSSSSS----------------------S----------------------------------------------
-----------SSSSSSSSSSSS---------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--S-------------------------------------------------------------------S---------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------S-------S------------S--------------------------
-------------------------------------S------------------------------------------
-------------------------------------------------------------------------S------
------SS-----------------------------------------------------------S--SSSSSSSSSS
-SSSSSSSSSSSSSSSSSSSSSSSS------------------S-SSSS------------------S------------
----------S---------------------------------------------------------------------
S------------------------------------------S--------------S----------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S-----S---
-----------------------S------------------------------------------S-S-----------
--------------------------S-----------------------------------------------------
------------------------S-------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------S--S-S----S----------------------S----------S------
--------------------------------------------------------------------------------
----------------------------------------------------S-----------------S-----S--S
SSS--------------------------------------------S--------------------------------
---------------------S---------------------------------S--------------S---------
--------------------------------------------------------------------------------
-------------------------------SS-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-S------------------------------S--------S-----------
-----S--S-------------------------------------------------------S---------------
-S----S------S-----------------S-----------------------S------------------S-----
-S------S--------S----S---------S--------------------------------------------S--
-------S-------S-----S-------S-----------------SSS-SSSSSSSSSSSSSS---------------
S---------------S--------------------S--S-------------SS------------------S----S
S---------SS----S-------S---S-----------------------------SS----------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_281
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGGCCGACCCTTTAAACTCG---------------------------------------
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-------------------------
>reverse_1940
--------------------------------------------------------------------------------
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-------------------TCAGAGCCCAATTCAGAGCC-----------------------------------------
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-------------------------
>forward_282
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGCCGACCCTTTAAACTCGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------
>reverse_1941
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------CAGAGCCCAATTCAGAGCCC----------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>forward_296
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACTCGACCAAAGGGGGTAGT------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_1943
--------------------------------------------------------------------------------
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----------------------GAGCCCAATTCAGAGCCCAG--------------------------------------
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-------------------------
>forward_445
--------------------------------------------------------------------------------
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-------------------------GTCAACTATGGGTGGCGACT-----------------------------------
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-------------------------
>reverse_2334
--------------------------------------------------------------------------------
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-------------AATGGCAACAATCCTCCCAT-----------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------
>forward_721
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ACATACTAGAGTCCACGCG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_2727
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------CCGGACGAGTCTTTGAATTACTG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------
>forward_2502
--------------------------------------------------------------------------------
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-TGACAAGGCAAGGTTCACTCA----------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_5622
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GAAGTTGCCCCACCTCTAGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
