>input_sequence_26987
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----------------------------------ATGGCGGCTCCGGCGGGGCCCACGAGGCTGGCCTACTTCGATGACA
TGTGGGCCCTCCGCGCCCCCGCCACCGTCCTCTCCCTCCACCAGGTTCTCTCTCCCTTCTCCCCCCCTCTCC--------
--------TCTCCTCTCCAGAGTTTCAGAACCCAGTACCCTGACTGACTAGGCTAGGCTCCGGGCGCCCGCAGGAGGAGG
GCGGCCGGCGAGCGGTGGTGCTGGACGCCACCGTCTTCCACCCGCAGGGCGGCGGCCAGCCGGCCGACACCGGGGCAATC
GTCTCCGCCGCCGGCACCGGCGCCAGGTTCCTCGTCGAGGACGTGCGCGTCAAGGATGGGGTGGTGAGCGCCCAGATCTT
CGGTAGCCTGTGATAAAGATTGCTGAATATTT----TGCCATTTGATCCGAGGCTTAGCTCTGTTCTGCACTTGTGCCGC
TGCTGCCTAGGTCTTCCACTATGGCAGATTCGAGGATGCTGCTGC------------TGGAGAGGAGCTGAGCCAAGGGC
AGAGTGTCAGCTTGGAAATCGACGCGGAACGGCGCAAGCTCAACTCCAGGTATGGATC----------------------
ATTCATGATGT-------TCAGTGCTGGCAAATCCGACATGGAGGGATGTTGTGGCACTCGCTGAATCGAAGTCAGCACC
ATTTCA--TTATGTTCTTGTCTTGCCCTGCACATTTCGTGACTGTTAGTTTTGCTAAACCTGTGATGCTTCAGGCTTCAC
TCTGCAGGTCATTTGCTGGACAGTTGTATGACCAACCTTGGCCTTCATCTGGAACCTGGGAAAGGCTATCATTTTCCTGA
TGGGTAGGAGAATACATACATACATGGCTATTTGTTTTTTTTTTATTCTTCCTTATGTTGTTCCTTTGTACCACTAATCG
ATTGACTCTGCATCCAGCTTCTATCTAGGTTTACTTTATTTGCTTGGTATAGATAGATGCTCCAGCTCATGTTAGTTTCC
ACTG-------TTTTGGTTGGACTTGGATTATTGATTACACTGCGGCTTTTGGTCATCGCAGGCCTTCCGTTGAGTATAA
GGGAGTTGTTCCAGCAGATCAGTTACAGGATAAGAAAATCCAGCTGGAAAAGGAGGCGAACGAACTGATTTCGAAAGGAA
GCAAGGTATAA----CCTAAGAGATCTGAGCATACAGGGTTTCATGACTTGGTATGTTTAATTATTTGCCATCGATGCAG
GTTTTGGTCTCTGTTTTTCCCTATGAGGAGGCGGCTAAGTTGTGTGGAGGTGCTCTGCCTAGTTACATTCCACAAGTTAG
TTCTGTATTCCCTCTAGACGAATTCGTCTTC----------CTTGTATTAGATGCACCCTCAACGGACATCATGGATAGT
TCTTGTATGTTTGGATGACTTCTCATAT--ATAATATTCCATTTTAATTCCCCTTCAAAAATTACGGACATACTCCCTCG
GTTCCAAACTACTTGTTGTTTTGGACATCAGCATGGTCTCTACTGGAACATACTTCCTCTGCTCCTAAATATAAGACGTT
TTTGCAGTTTAATTTGAACTGCAAAAATTTCTTATATTTTGGAACGGAGGCAGTATTTATGAAATCTCACACAAG-TATA
TGTTGTGAAAGTACCCTTAACAAATTCGCACCTA-TGATTTTCAATTGTCCAGTTCAAATATTGT-AAAGATGTTGGTTG
TGGAAGTTCTTACTGTTTTACTTTCCTTATGTGCAAACCAGCAGAAGAGAGTATATCGTATCTCTGGATTG---------
-ATCTGTTTGAT--------------------------------------------------------------------
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---------------------------------------ACTAGGGGAAAAAAAATCAATGCGAAAGCATGTGTGACTGC
ATATAACATATGCAGAGTGTTATAATTTTGTTGTGAGCTCATCTTGAATTATGAAACAGATCAAGAATCAAGAAAATAGC
TCTTTTCCGGAATCATTCAAATGTGTAATATTTGTTCTGAGTTTTATGCTGTTTTTAAAACATCGACCCTACTTTATTAA
TATAGTTGAGTAGTAAATGCCACCTTACAG-TTTTGTGTTTCTCTAATTCCAACTCTTCCATTAGTGAAATGACTGTATG
ATGTTTCTATC-----------------------ACAGGATAGCACTCCCCGCATTGTGAAATTTGGTAACTATCCTGGT
TGTCCTTGTGGAGGCACTCATGTAGCCGATATTGCAGACATCGGCAACCTAAAGGTAGATTCTCAGGCCTGTCCAGATTT
CCAGAAAATTTAACCGCAAGTCATGAAAAACTAGCCAGCGCGGAGACTGGAACAGTT-AGTGGCTTCTGTGAAGTAGAAA
ATGATTTTATAATAAAACTTC-ACACATAGTCTTGCTGCTGATCGCTGGGATTAGA-----CAGATGATAGTTTTGAGCA
ATATTCATGAAAATTGGACATTTGGAAAAGTTTAGTCATCGCATTGATGCTGCTACCTGCTAGTACATGTACTATTGACC
TTTATCTCTGTTTAGCTGCCG-----------------------------------------------------------
-------TCCAATAAGTTGTCTGTAACATGTCAATAGGCCGTGTTGGCTTTCTTGGGAGATTTCAAGGCCAGAATGACAG
----------TGTGCACCACATGAGCAAACTATGAAGTC--ACTCTGATACTTTTGTTAAAAATCCAGGTCATAGACACA
TACAAGGAGCATTGGCCGAAATGAATAGTAAATTAGTACTCCCTCTGTAAACAAATATAAGATTGTTTACATCACTAAAA
TAGTAATCTAAACACTCTTATATTAGTTTACGGAGGGAGTAGTACCGTACAGCAGCTCAGATACATCTATACTTT-----
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------------------------------------------ACTAAAGCAACAGAACGGTCCTAGGCATGTTTTGATAC
TTTCCAGTAGATGATTGCCAGATTATTCCCTTTTTATAATGA--AGGCTGATCTCATCTGCTATTCTATCAGGTCACAAA
TATACGGGTCAAGAAAGGCGTGACTAAGGTCTCCTACAGCATCAGCCCATAA----------------------------
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--------------------------------------------------------------
>chr3B_1_TraesCS3B01G020800
TGAATAAAAAAGTTGTTTATGGATTTAATTATAATTTTATCAATTAGCAGCAGGGTCACGTTCACATGCGAATAAGCTCA
ATCATGGCGCACAATCAGTCCACTCTCTGACATGTGCGGCCACAAATGTAAAATATACCTGGATGCACTAGTAGGCTCCA
TTCCAAAGGAACTTAGTAAGTTAAGAGGTTCAGATCGTTCAGGCCACGGCTCTGCATAAGTGTTGAAGATATCCTTCACA
ATTATACTTACTGCATGGGACATGTGGTTAGCAAACTCATAATTCACATCCTTCACAATTATACTCGTTTCATTT---CA
AAATATTTGAAGTTCTAAGTTTATTAAGTCAACAAAAGTTTAGGATTGTCTCAAAAAAAA--AAGTTTAGGAGCACTTTT
GGGAGGGACTAGTTGGAGGGCTCCACGTGGTGT------GCTCTACCACGTGTAACACGTTGGTTTTTTTGTTTCAGTTT
CATCCCGGATTTTACTTCGGGCTACTGTTTT-----TTCTCTATGTTCTTTATGTATTTCATTGTTTTTTTTTTGGTTTA
CGTCTGACAGAAGCATGTGCTTCACCCCCCATGGGAAGCACAATCTTATTTGCATTGGAAGCACA---------------
---------GTGACTACAGCTAGAAGCAAAGATTTGGCCCAAAAAAAGTTTGAAAAAATCTATCAACATGTAATTTAGTC
TTGGAGATCTCGACGCGGAAACACAGCGGTG--AAAACATTTGTGATTTACACAAACAGTTCAAGAGATAAATCATTTTG
AT-AGAACAAATCTAACGGGAAAAAAAGGCAAAA----------------------------------------------
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-----------------------------------------------GCTTTCACCATCAAATCGGTGGTGGTTAGTTCC
AAATTATCTGCTGGAAATTGGAAGATCAGACGCACACACC----TTTTTTACTTGGACCCTGCAATCGAATTGACCTGGC
GAGTTTTTTTTTACAGTGC-------------AGGCGCCGCAACAGCACCACCGTAGATCGGTCATCAGTCAGTACCACG
CTCGCCGCCGGCGACGGCCGACTTCTCCG-GGGGATGGCGGCTCCGGCGGGGCCCACGAGGCTGGCCTACTTCGATGACA
TGTGGGCCCTCCGCGCCCCCGCCACCGTCCTCTCCCTCCACCAGGTTCTCTCTCCCTTCTCCCCCCCTCTCC--------
--------TCTCCTCTCCAGAGTTTCAGAACCCAGTACCCTGACTGACTAGGCTAGGCTCCGGGCGCCCGCAGGAGGAGG
GCGGCCGGCGAGCGGTGGTGCTGGACGCCACCGTCTTCCACCCGCAGGGCGGCGGCCAGCCGGCCGACACCGGGGCAATC
GTCTCCGCCGCCGGCACCGGCGCCAGGTTCCTCGTCGAGGACGTGCGCGTCAAGGATGGGGTGGTGAGCGCCCAGATCTT
CGGTAGCCTGTGATAAAGATTGCTGAATATTT----TGCCATTTGATCCGAGGCTTAGCTCTGTTCTGCACTTGTGCCGC
TGCTGCCTAGGTCTTCCACTATGGCAGATTCGAGGATGCTGCTGC------------TGGAGAGGAGCTGAGCCAAGGGC
AGAGTGTCAGCTTGGAAATCGACGCGGAACGGCGCAAGCTCAACTCCAGGTATGGATC----------------------
ATTCATGATGT-------TCAGTGCTGGCAAATCCGACATGGAGGGATGTTGTGGCACTCGCTGAATCGAAGTCAGCACC
ATTTCA--TTATGTTCTTGTCTTGCCCTGCACATTTCGTGACTGTTAGTTTTGCTAAACCTGTGATGCTTCAGGCTTCAC
TCTGCAGGTCATTTGCTGGACAGTTGTATGACCAACCTTGGCCTTCATCTGGAACCTGGGAAAGGCTATCATTTTCCTGA
TGGGTAGGAGAATACATACATACATGGCTATTTGTTTTTTTTTTATTCTTCCTTATGTTGTTCCTTTGTACCACTAATCG
ATTGACTCTGCATCCAGCTTCTATCTAGGTTTACTTTATTTGCTTGGTATAGATAGATGCTCCAGCTCATGTTAGTTTCC
ACTG-------TTTTGGTTGGACTTGGATTATTGATTACACTGCGGCTTTTGGTCATCGCAGGCCTTCCGTTGAGTATAA
GGGAGTTGTTCCAGCAGATCAGTTACAGGATAAGAAAATCCAGCTGGAAAAGGAGGCGAACGAACTGATTTCGAAAGGAA
GCAAGGTATAA----CCTAAGAGATCTGAGCATACAGGGTTTCATGACTTGGTATGTTTAATTATTTGCCATCGATGCAG
GTTTTGGTCTCTGTTTTTCCCTATGAGGAGGCGGCTAAGTTGTGTGGAGGTGCTCTGCCTAGTTACATTCCACAAGTTAG
TTCTGTATTCCCTCTAGACGAATTCGTCTTC----------CTTGTATTAGATGCACCCTCAACGGACATCATGGATAGT
TCTTGTATGTTTGGATGACTTCTCATAT--ATAATATTCCATTTTAATTCCCCTTCAAAAATTACGGACATACTCCCTCG
GTTCCAAACTACTTGTTGTTTTGGACATCAGCATGGTCTCTACTGGAACATACTTCCTCTGCTCCTAAATATAAGACGTT
TTTGCAGTTTAATTTGAACTGCAAAAATTTCTTATATTTTGGAACGGAGGCAGTATTTATGAAATCTCACACAAG-TATA
TGTTGTGAAAGTACCCTTAACAAATTCGCACCTA-TGATTTTCAATTGTCCAGTTCAAATATTGT-AAAGATGTTGGTTG
TGGAAGTTCTTACTGTTTTACTTTCCTTATGTGCAAACCAGCAGAAGAGAGTATATCGTATCTCTGGATTG---------
-ATCTGTTTGAT--------------------------------------------------------------------
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---------------------------------------ACTAGGGGAAAAAAAATCAATGCGAAAGCATGTGTGACTGC
ATATAACATATGCAGAGTGTTATAATTTTGTTGTGAGCTCATCTTGAATTATGAAACAGATCAAGAATCAAGAAAATAGC
TCTTTTCCGGAATCATTCAAATGTGTAATATTTGTTCTGAGTTTTATGCTGTTTTTAAAACATCGACCCTACTTTATTAA
TATAGTTGAGTAGTAAATGCCACCTTACAG-TTTTGTGTTTCTCTAATTCCAACTCTTCCATTAGTGAAATGACTGTATG
ATGTTTCTATC-----------------------ACAGGATAGCACTCCCCGCATTGTGAAATTTGGTAACTATCCTGGT
TGTCCTTGTGGAGGCACTCATGTAGCCGATATTGCAGACATCGGCAACCTAAAGGTAGATTCTCAGGCCTGTCCAGATTT
CCAGAAAATTTAACCGCAAGTCATGAAAAACTAGCCAGCGCGGAGACTGGAACAGTT-AGTGGCTTCTGTGAAGTAGAAA
ATGATTTTATAATAAAACTTC-ACACATAGTCTTGCTGCTGATCGCTGGGATTAGA-----CAGATGATAGTTTTGAGCA
ATATTCATGAAAATTGGACATTTGGAAAAGTTTAGTCATCGCATTGATGCTGCTACCTGCTAGTACATGTACTATTGACC
TTTATCTCTGTTTAGCTGCCG-----------------------------------------------------------
-------TCCAATAAGTTGTCTGTAACATGTCAATAGGCCGTGTTGGCTTTCTTGGGAGATTTCAAGGCCAGAATGACAG
----------TGTGCACCACATGAGCAAACTATGAAGTC--ACTCTGATACTTTTGTTAAAAATCCAGGTCATAGACACA
TACAAGGAGCATTGGCCGAAATGAATAGTAAATTAGTACTCCCTCTGTAAACAAATATAAGATTGTTTACATCACTAAAA
TAGTAATCTAAACACTCTTATATTAGTTTACGGAGGGAGTAGTACCGTACAGCAGCTCAGATACATCTATACTTT-----
--------------------------------------------------------------------------------
------------------------------------------ACTAAAGCAACAGAACGGTCCTAGGCATGTTTTGATAC
TTTCCAGTAGATGATTGCCAGATTATTCCCTTTTTATAATGA--AGGCTGATCTCATCTGCTATTCTATCAGGTCACAAA
TATACGGGTCAAGAAAGGCGTGACTAAGGTCTCCTACAGCATCAGCCCATAATTTTCTTCTGTGCAACTCTCAAAACTAG
TAGAATTTGTCAGAGAAGTGGGAGGATAATTACCTAGAGAATCAGAAGGCTGATGTCCGCTGTCTCCTCTTGTGCTAGTA
GATCTATAAATATTTACA----------------------------TATACTATTTGAAAAGGTACTAGTAGATCTATAA
ATATATGGTGATGTATTCTGTCTCCTCTTGTGCCGTGGTAGATCGTCGGAAAGGCTGATTTGCAGATCAGATGTTCCAC-
-CTCAGGCTATCCTGCCCTCTCCTTATCCGTTGAGATATA----------CTATAGATATCTTTTATATGTATGAAATAG
TGCATACCATTAGGTATTTGCTTTAGTGGACTGTTAAGAATTG---------ATCCTACAGTTTGTCACAGCTCCTGAGT
CTTGAATGTCAATCCATCCAGGTTGTGGGAATAGTTTTTGGTTCCAGCTAAGCATTTATCCTTGAGGATAGTTTGGGGAT
TAAAGCGAGTCTATCAATGGTAAATAGACCATGTTTCACCTATTTGCAATGGCACCACAATAATTTCACTGAGAAATAAA
AATATCGC-TTCGATTAGCTTAACCAATTGCGCAAAAGAGTAAACCCATAAATGAATGAATTGCTATTATTTTTGCACAG
ATTTACAAATGAAGTGATTACAACTGGTTATTTCTGAAACGTACGGGTACTTACAGAGCATTTACAAATGCATGAAATGT
GTGTTGCGTGTTTACAACAACATGAAGATAATTTACAACAAGTATATCTAATTAAGCCTTGGTTAAATATGGACAGGGCT
ACCTAGCTAGCTAGCTAGCATGGTTATTTGTACATTTCCCTTTCCATGTACAAGTGAATGAATGCAGTCAGTATGTAGTA
TGTGCAAATTTGTATGGAAGCAATTAGTCGACCCATTCCATGGATCATCTGACGATGGCCCTCGAGTGCCGGAGGACCAT
GCTGAACGGCGTCGTCGTCATGGGCCGTCGCACTCTCCGGCCACCGGTAGAGGTCGCCGTCG
>chr3A_79
------------------------------------------------------------------------------CA
ATCATCGCGCACCATCAGTTCACTCTCTGACATGTGGGGCCACAAATGTAAAATATACCTGGATGCACGAGGATGCTCCA
TTCCTAAGGAGCTTAGTAAGTTAAGAGGTTAAGATCATTCAGGCCACGGCTCTGCATAAATGTTGAAG------------
---------------------------------------------ACATCCTTCACAATTATACTCATTTCATTGTTCCA
AAATATTTGAAGTTCTAAGTTTATTAAGTCAAT-------------------------ATAGAAGTTTAGGAGCACTTTT
GGGAGGGACTAGTTGGAGGGTG-----------------------CCACGTGTAACACA-------TTTTTTTTCAATTT
CATCCTGGATTTTTCTTCGGGGTATTGTTTTTTTTGTTTTCTTTGTTCTTTTTCTATTTCATTGG--TTTTTTTGGTTTA
CGTCTGACAGAAGCATGTGCTTCACCC-CCATGGGAAGCACAATCCTATTTGCACTGGGGGCACAATTTAGTTCACGTTG
GAAGCACAAGCTACTACAGCTGGAAGCAAAGATTTGGCCAAGAAAAAGTTTGAAAAAACCAATCAACATGGAATTTAGTC
TTGGAGATCTCGACGCGGAAGACAAAATGGTGAAAACGATTTGTGATTTAAGCAAACAGTTCAG------AATCATTTTG
ATAAAAACAAATCTTACGAAAAGAAGAAGCAAAAACAGTCTATGCATCAGCTTTGGCCCATGGACTTGCACAATATTTCG
CGAGCCAATCTCGTTGTCCCTGCTAAGGCCCGTGGGAAAAAAATGATGAGGGGTTCTTTTTCTTTTTCTTTTTCTTTCTT
TGCGAGGCTCATGATGAGGGGTTCTTTTTTTTTGGCGAGGTTCATGATGAGGGGTTCGGTTTAGCGGTTGAACAGCTAAG
GCTTAGTTTGGCAGCAAAGTATTTTTAAAACTGTGGTAATTGAAAACCATAGTATTCTTCTAGGTGGGCATTAAATACTA
CAGTTTTTTAAAAACAATGTTTTCTTTCAGTTTTACATGTGTTTGGTTGGTGTTGTTTTACCAAAGTTTTGACCAAATAT
TTTAGCATGGATGATTGATTGACTGAGAGAGCGGCTGCAAACAGCGGCCGGCTGCATGCAGCTGCCATGCACACATCCGC
CGGACCTACTCCCTCCGTTCCCAAATACTTGTCTTTCTAGGCATTTCAAATGGGCTCAACATGCGGATGTATGTAGACAT
ATTTTAAAGTGTAGATTCACTTATTTTGCACCGTATGTAGTCATTTGTTGAAATCTCTAGAAAGACAAGTATTTAGGAAC
GGAGGGAGTAGATGCTAGGATCTATAGACTACCCATGATGCACCTACATGCATGGGCTACTGGCATTGAAGGTTTCAAAT
AATCCACCTATATATATCCCGCTTGATTCGCTCATGGCGCTGCAGAGAAGAGATGGGACTTGCACGGGACGCCGGCTGGA
AGAAGAACCTGAGAAACCTACTACTCGTAAATAGGATGAGATTGGCTAGAACCAGGAGTTTACCATATAACGGAAAGAGG
GAAAATAGGACCGGATCGTAGCTGGTATTCTTATCTCGACGTAGACGGCAACGTCAACTGCGATCTCCCGATGATTTCTC
TCCGTTCTGTTTTGAAAAAAAGAGGTCGGGACCTCTTTTTTCAAAAACCGCAGAAATACCATGGTTTCTGGCATACTGTG
GTTTACAAAATTTTGGCTTTTTCTGATGCCAAACACAGCAAAGTATTCAAAACCATGGTTTTTTTTTTCAGAAACCGTAG
TATTCTCAGAAAACTAAAAAAAAAAAACTTTGCTGCCAAACGCAGCCTAAAATGTTTCGATGTTCTTCAACTCAATTACC
GCACACAATTATTATGTACTTACACGGATGACGAGAATGCTCCAACGATGTGTTGATAAGTACTACTCCCTCCATTCCTA
AATATTTGTCTTTCTAGAGGTTTCAATAAATGACTACATACGGAGCAAAATAAGTGAATCTACACTCTAAAATATGTCTA
CATACATTCGTATGTTGAGTCTATTTGAAATGCCTAGAAAGACAACTATTTGGGAACGGAGGGAGTACTATTTGTGCTTC
CTGGAAATTTCAGTGCTTTTTCTTTCTTCTTACCACCAATCTTCCAAGGTTTCACCATCAG-TCGGTGGTGGTTTATTCC
AAATTCTCTGCTGGAGATTGGAAGATCAGACGCACACACC----TTTTTTACTTGGACCCTGCAATCGGATTGACCTGGC
GAGTTTTTTTTTTTTTTTTACAGTGCAGGCAGAGGCAGCGCAACAGCGCCACCGTAGATC-------AGTCAGTACCACG
CGCGCCGCCGGCGACGACCAGCTTCTCCGCGGGGATGGCGGCTCCGGCAGGGCCCACGAGGTTGGCCTACTTTGATGACA
TGTGGGCCCTCCGCGCCCCCGCCACCATCCTCTCCCTCCATCAGGTTCTCCCC-----------------CC--------
--------TCCCCTCTACAGAGTTTCAGAACCCTGGACC----CTGACTAGGCTAGGCTCCGGGTGCCCGCAGGAGGAGG
GCGGCCGGCGAGCCGTGGTGCTGGACGCCACCGTCTTCCACCCGCAGGGCGGCGGCCAGCCGGCCGACACCGGGGCCATC
GTCTCCGCCGCCGGCGCCGGCGCCAGGTTCCTCGTCGAGGACGTGCGCGTCAAGGATGGGGTGGTGAGCGCCCAGATCTC
CACGAGCTTCTGATAAAGATTTATAAGAGTGC---TTGTCATTTGATTTGAGGCTCAGCTGTGCTCTGCTGCTGTCGTGC
--------AGGTCTTCCACTATGGCAGATTCGAGGATGCTGCTG---------------GAGAGGAGCTCAGCCAAGGGC
AGAGCGTCAGCTTGGAAATAGACGCGGAACGGCGCAAACTCAACTCCAGGTATGGA------------------------
------GATGT-------TCAGTGCTAGCAAATCCGACATGGAGGAACGTTGCGGCAGCCAC-GAATCGAATTCAGCACC
ATTTTTCGTTATGTGCTTGTCTTTCTCTGCATATTTTGTGACTGTCAGTTGTGCTGAACCTGCGATGCTTCAGGCTTCAC
TCTGCAGGACATTTGCTGGACAATTGCATGACCAACCTTGGCCTTAAGCTGGAACCTGGGAAAGGATATCATTTTGCTGA
TGGGTATGACC------ATATACAGGACTACCTATTTTCCGATTCTTCATCTCTTGTTATCCGTAA-----CGCTGATCG
ATTGACTCTGTGTCTAGTTTTCATGTAGGTTTTCTT----TACTTGGTATAAGCA----CTACAGCTCATGCTAGTTTTC
ACTACTGTTTATTTTGGTTCCACTTGGATTATTTAGTACATTGTGGCTTTTGTTCGTTGCAGGCCTTTTGTTGAGTATAA
AGGAGTTGTTCCAGCGGATAAATTGCAGGATAAGAAACTTGAGTTAGAAAAGGAGGCAAATGAACTGATTTCTAAAGGAG
CCAAGGTATAAATAACCCAAGAAACCTTAGCGAT-AGGGTTTCATAATTTGCTGTGCTTAATTATTTACCATTGGTGCAG
GTCTTAGTCTCTGTTTTCTCTGATGATGAGGCCGCTAAATTATGTGGAGGTGCTCTGCCTAGCTACATTTCAGAGGTTAG
TTATGTTACTTCCATGGAGGTGCCCTTTTAGACGGATTTGTCTTGTATGAAATGCACACTCACCCAACGCCATGTATATT
TT-----------GATAACTTCTCATGT--ATAATATCCCATTGTAATTCCCTTTCAAAAATTACAGAAATACTCCCTCA
GTTCCATAGTA---GTTGTTTTGGACATCGACGTGACATCTAAAATGTAACTTTGACATCTGATTTCTATTGGAATC---
-----------------------------------------------------CATTTATGAAATCTCACAAAAACTCTA
TGTTGTGAAAGTACTCTTTAACAGATTTGTGCACGTGATTTTCATTTATCCAGTTCAAATAGTTAGAAAGATACTGGTTG
TGGAAGTTCCGAATGTTTGACTTTCCTTAGGTGCAAACCGGTAATTATTAGGGGAGCAGAGGGAGCTGTTTATTAAGATG
CATCTGTTTGAT--------------------------------------------------------------------
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---------------------------------------ACTA--GGAAAAAAATTCAATGTGAATT---------TTTC
ATATTACATATGCAGAGTGTTATAATTCTACTG--------------ATTATGAAACAAATCAAGAAAACAACCATTTTC
GGGAGTAGCTAAA-----AAATGTGCAATATTTGTCCCAATTTCTATGCCGTTTAAAAAACATCAATCCTGCTTTATTGA
TAGAGTTGATTAGAAAATGCCACCTTGCAGTTTTTGTGTTTCTCTAACTCGAACCCTTCCAT---------GACCGCCTA
ATGTTTTTATT-----------------------ACAGGGTAGCACTCCCCGCATTGTGAAATTTGGTGACTATCCTGGC
TGTCCTTGTGGAGGCACTCATGTAGCCGATATCGCAGACATCGGTAACCTAAAGGTAGATTCTGAGGCCTGTGCAAATTT
CCAGA-AACTTAACCACAACTCATGAAAT-CTACCCAGCAGAGAGACTAGATGAGTTGAGTGACATCTGCGAAGTTG-AA
ATGATTTTATAACAAAACTCGAACATGTAGTCCTGCTGCTGATCATTAGGATCACAA-----AGATGATAGTTTTGGGCA
ATATTCATGAAAACTGGACGTCTGGAAAAGTTTAGTCGGCGCACTGATGCTGCTA-------GTCCATGTACTATCGACT
ATTA-CTTTGTTTAGCTG--------------------------------------------------------------
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>chr3D_287
--------------------------------------------------------------------------------
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----------------------------------------------CATCCTTCACAATTATACTCGTTTCATCATTCCA
AAAAATTTGAAGTTCTAAGTTTATTAAGTCAAT-------------------------AA--AAGTTTAGGAGCAGTTTT
GGGAGGGACTAGTTGGAGGGTGCCACATGGTGTGCTCCAGCTCCGCCACATGTAACACGTTGG-TTTTTTGTTTCAGTTC
TATCCCGGATTTTTTGA--GGGCATTGTTTTTT---TTTCCTCTGTTCTTCCTCTATTTCACTGG--TTATTTTGGTTTA
CGTCTGACAGAAGCATGTGCTTCGCCC-CCATGGGAAGGACAATCTTATTTGCATTGAGAGCACAGTTTACTTCACGCTG
GAAGCACAAGTTAGTACAGCCGGAAGCAGAGATTTGGCCCCAAAAAAGCTCGGAAAAACCTATCAACATGAAATTTGGTT
TCGAAGTTCTCGGCATGGAAAATAAAATGGTGAAGACGATTTGTGATTTAAACAAACAGTTCAAGAGATCAATCATTTTG
GT-AAAACAAATCTTATGGGAAAAAAAAAGCAAAATCTTATGTCAGTGTGGCACTAGCTAGGCTTCCAATG---------
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-----------------------------------------------------------TTTTTTCTTCAGACTTGAGAC
TTGAGACACATGGCCGGAGGTGACTGGAGGCATGA---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------TGCTTC
CCGGAAATTTCACTGCCT----TTTCTTCTTACCACCAATCTTGAAAGCTTTCACCATCAAT--GGTGGTTGTTTATTCC
AAATTCTCTGCTGGAAATTGGAAGATCAGACGCACACACACTTTTTTTTTACCTGGACCCTGCAACCGAATTGACCTGCC
AAGT----TTTTACAGTGC-------------AGGCAGCTCAACAGCGCCACCGTAGATCGG---TCAGTCAGTACCACG
CGCGCCGCCGGCGACGACCAGCTTCTCCGCGGGGATGGCGGCTCCGGCGGGGCACACGAGGCTGGCCTACTTCGAGGACA
TGTGGGCCCTCCGCGCCCCCGCCACCGTCCTCTCCCTCCATCAGGTTCTCCTC-----------------CCCTCTCCCC
TCCTCTCCTCTCCTCTACAGAGTTTCAGAACCCAGTACC----CTGACTAGGTTAGGCTCCGGGTGCCCGCAGGAGGAGG
GCGGCCGGCGAGCGGTGGTGCTGGACGCCACCGTCTTCCACCCGCAGGGCGGCGGCCAGCCGGCCGACACGGGCGTCATC
GTCTCCGCGTCCGG---CGGCGCCAGGTTCCTCGTCGAGGACGTGCGCGTCAAGGATGGGGTGGTGAGCGCCCAGATCTT
CAGTAGCTTGTCATAAAGATTGCTGAATATTTATTTTGCCATTTGATCTGAGCCTTAGCTGTGTTGTGCACTTGTGCTGC
CGCTGCCTAGGTCTTCCACTATGGTAGATTTGAGGATGCTGCTGCTGGAGATGGATGTGGAGCAGAGTTCACCAAAGGGC
AGAGTGTTACCTTGGAAGTCGATGCGGAACGGCGCAAACTCAACTCCAGGTATCTGAATGAAGCACGCACGCTGTAAGCT
ATTCATGATGTCTGTCGATCTGTGTTTGCAAATCTGACATGGAAGAAAGTCATGCTAGTCGCGG-ATCGAATTCAGCACC
ATTTCA--TTATGGTCGTGTCTTGCTCTGCATATTACGTGACTGTCAGTTGTGCTAAACCTGCAATGCTTCAGGCTTCAC
TCTGCAGGGCATTTACTGGACAGTTGTATGACCAACCTTGGCCTTCATCTGGAACCTGGGAAAGGATATCACTTTCCTGA
TGGGTATGACC------TTATACATGACTACTTGTTCCTCTGTCCTTCATTATGTTGTTCTC----TGCACCGCTAATCA
ATTGGCTCTGTATCCAGCTTTTATGTAGGCTTTCTTTATTTACTTGGTATAGATAGATGCTCCAGCTCATGTTAGTTTCC
ACTG-------TTTTGGTTGGACTTGGATTCTTGATTACACTGTGGCTTTTGCTCATTGCAGGCCTTCCGTTGAGTATAA
GGGAGTTGTTCCAGCAGATCAGTTACAGGATAAGAAAATCCAGTTGGAAAAGGAGGCGAATGAACTGATTTTGAAAGGAA
GCAAGGTATAA----CCCAAGAGACCTTAACATACAGGGTTTCATGACTTGGTATGTTTAATTATTTACCACCGATGCAG
GTTTTGGTCTCTGTTTTTCCTTATGAGGAGGCGGCTAAGTTATGTGGAGGTGCTCTGCCTAGCTACATTTCACAAGTTAG
TTCTGTATTCCCTCTAGACGAATTCGTCTTC----------CTTGTATTAAATGCACCCTCAACGAACATCATGGATAGT
TCTTGTATGTTTGGATGATTTCTCATATGTATAATATTCCG-TTTAATTCCCGTTCAGAAATTGCAGA------------
----------------------GGACATCGTCGCGGTTTCTAAAATGTTAATTTGACCACTAATTTCTGTTGGAATC---
-----------------------------------------------------TATTTATGAAGTCTCACAAAAT-TATA
TCTTGTGGAATTACTCTTAACAAATTCGGACATA-TTATTTTCAGATACAGTGCTAGTACTTTA--AAATATATTGCTGG
TGAAAGTTCTGAATGTTTGACTTTCCGTATATTGAAAACGACAGCTGTTTGAACCAACGAAAAAAATAGCGCGCTACAAA
ATATAGCGAGGCCCTTCTCCAAATGCTACACAAGTTATAGCGTGCTATATTTCAAAATAGCATTTGCAAAAAATTTCAAA
TATATCTAGAAATAAAGTATTTAAGCAACTAAATTTTTGCTAGGAGCAAGCAATATATGCATAAGGGCCAAATCTAGGAC
ATAAAAATTGTAAGTCTCAAACAGTTTCAAGATAAAAAGAGTGAGAAAGGTAGTGGTCGTGGGTTGGTTTTGGCCTGCTG
GGCTGTGGTTGTTTAAATTTTGCATGGTCTGCACGTTAAAACGTGTAACGCTACAACAACGTTATAGTGTGTGTAGCGCG
CTAATTACGCAATTAGCGCCGTAGCAGCCGATTTTGCCAAAACGTAACGTCTCCCTTCCGAATATGCTATAACCGCGCTA
TAACGGCGAAATAGCGTGCTATTTTTTTCGTTGGTTTGAACTA--GGAAAAAAATACAATGTGAAAGCATGTGTGATTGC
ATATAACATATGCAGAGTGTTATAATCCTGCTGTGAGCCCGTCTTGAGTCATGAAACAAATCAAGAAAAATGGCTATTTT
CTAT------AATAATTCAAGTGTGTAATATATATTCTGAGTTTTATGTTGTTTTAAAAACATCAATCCTACTTTATTGG
TAGAGTTGATCAGTAAACG-CACCTTACAG-TTTTGTGTCTCTCTAACTCCCATCTCCTGCGCATGCGCAGGAGCTACAT
GCACCGGGTTGCCCTAACTCCCATCTCCTCCATTACAGGACAGCACTCCCCGCATTGTGAAATTTGGTGACTATCCTGGT
TGTCCTTGTGGAGGCACTCATGTAGCTGATATCGCAGACATCGGCAACCTAAAGGTAGATTCTCAGGCCTGTCCGAATTT
CCAGAAAACTTAACCGCATGTCATGAAAA-CCACCCAGCGCAGAGACTAGGACAGTTGAGTGGCTTCTGTGACGTTGATA
ATGATCTTGTAACAGAACTGGAGCACATAGTCTTGTTGCTGATCGTTGGGATCACAGCATGCAAATGATAGTTTTGAGCA
ATATTCTTGGAAATTGG-CATCCGGAAAATTTTAGTCGTCACACTGATGCTGCTA-------GTCCATGTACTGTCAACC
TTTATCTCTGTTTAGCTGACGTCCACATTGTTTTTGTGCAAGTTGAGTGATTGTAGAGAGTAAAAGCAACATGCTTGTGC
TCGTGTTTCCAACAAGTTGTTTGGAACATGCCAATAGGTCGGGTTGGTTTTCTTGGGAGATTTCAAGGCCAGAATGACAG
CCAATGACAGTGTGCTCCGCATGACCAAGCTGTGAAGTCCAACTCTGATACTTTTGTTAAAA-TCCAGGTCATAGACATA
TACAAGGCGCATTGGCCAAAATGGATTGTAAATTG---------------------------------------------
--------------------------------------GTAATATGGTACATCAGCTTAGATACTATAACTATTTGGTGA
GAGCAAGCAACAAGTCTGGGCTTATTTCAGATGTACTCCCTCCGTCCCATAAGGTAAGACGTTTCTTGACACTAGACTAG
AGTCAAAAAACGTCTTACATTATGGGACGAAGGGAGTACTGAACTAAAGCAGCAGAAGGGTCCTAGGCATGTTTTGATAC
TTTTCAGCTGATGATTGCCTGTTTATTCCCTTTTTATAACTTGGAGGCTGATCTCATCTGCTATTCTTTCAGGTCACAAA
TATACGGGTCAAGAAAGGCGTGACTAAAGTCTCCTACAGCATCAACCCGTAA-TTTTTTCTGCGCAACTCTCGCACCCAG
---AATTTGTCAGAGTAGAGGAAGGATAATTATCTAGAGAATCAGAAGGCTAGCATCATCGTTTTTCGTAAATTTAGTTT
TGTGCGACGACACTAAATATCTAGAGGACAAAATAGATGGTTACATTATACTATTTGAAAAGGTACTAGTAGATCTATAA
ATATATGGTGATGTATACTGTCTCCTCTTGTGCCGCGGTAGATTGTCGGAAAGGCTGATTTGCAGATCAGATGTTCACCT
GCTCAGGCTATCCTGCCCTCTCCTTATCCGTTGAGATATATATGTCACAACTCTTGATATCTTTTGAATGTGTGAAATAC
TGTATACCGTTAGGTATTTGCTTTACTCAACTGTTTAAGAATTGTGTTAACTATCCTACAGTTTCTCACAGCTGCTGAGT
CTTGAATGTCAACCCATCTAGGTTGTGGGAATAGTTTTTGGTTCCAGCTAAGTATTTA-CCTTGAGGGTAGTTTGGGGAT
TAAAATGAGTCTAACAATGGTAAATAGGCCCTCTTTCACCTATTTGCAATGGTGCCACAGCAATTTCATTGAGAAATAAA
AAGTATCGGTTCGATGAACCTAACCAATTGCGCGGAAGAGTAAACCCACAAATGAACGGATTGCTTTTATTTTTGCACAG
ATTTAC-AATGAAGTGATTACAAATGGTTATTTCTCAAGCTGA----TACTTACAGAGCATTTACAAATGAATGAAATGT
GTGTTGCGTTTTTACAACAACATGAAGATAATTTACAACAAGTAC--CTAATTAAACCTTGGTTAAATATGGACACGGCT
ACCTAGCTAGCTATCTAGC--GGTTATTTGTACATTTCC------ATGTACAAATGAATGAATGCAGTCAGTATGTAGTA
TGTACAAATTTGTATGGAAGCAATTAGTCGACCCATTCCATGGATCATCTGACGATGGCCCTCGAGTGCCGGAGGATCAT
GCTGAACGGCGTCGTCGTCATTGGCCGGCGCACTCTCCGGCCGCCGGTAGAGGTAGCCGTCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-----S------S------S----------------S-------------------------------S--S-S------
----S-----S-------------------S-----S----------------------S--------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-----
--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
--------------------SS----S----------------SS------------------S----------------
-------------S-------S--S-------------S---S--------S-S----------SSS-------------
---------------------------S------------------------------S---------------------
-----------S---------S------------------------------------S-----------S---------
---------------------SSS-SSS-SS-----SS------------S------------------S----------
----S---------S------------S----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------S------------SS----
-----S--------------------------------------------------------------------------
------------------------------------SS---------S--------------SSS---------------
-S--------------S--SS-----------------------------------------------------------
----------------------------------------S---------S-SSSSSSSSSSSSSSSSSS----------
----------------S----------------------SSSS---------------------S---------------
----------------------------------------------------------------------------S---
---------------S----------------------------------------------------------------
-S-----S----------------------------------------S-----------S----------------S--
S--------------------------------------------------------------------S----------
-------------------------------------S------------------SS----------------------
--------------------------S------------------S-S---------S----S--------S--------
-------------------------S-----S-------------S----S-----------S-----------------
--------S--------------------------------------------------------S--------------
------S--SSSSSSSS-S-------S---S--------S-S--S---S--S--S----S-SSSSS--S---S-------
----------S---------S---S-------S--------S--------------------------------------
-------------------------------------------S--------S----S----------------------
-------------------------------------------S----------------S-------------------
-----------------S------S--S---------------------------------------S------------
--------------------S--------------------S--------------------S------S----------
--------------------------------------------------S--------------S--------------
----------------------------------------------------S------------S--S----------S
------S-S--SSS---------------SS-S----S----SSSSSSS-SSS-SS-SSSSSSSS-SS--SSS-SS-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S--S-----
--------------S-------------S---------------S--S---------------SS-------S-------
----------S-S-----S--------------------S----SS-SS--S-S-S-SS-SSSSSSS-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------SS---------S------S--------------S---
---------------------------S--S-------S-S-----------------S--------SS---SS---SS-
SSS-S-SSSS---S-----------------------------------------S--------S-S-----------S-
--S------S-------------------------------------S------S-------S-SSSSS-S---S-SS-S
------S---S---------------------------------------------------------S-----------
--------------------------------S------------------------------------------S----
--------S--------------------S---S-------S------S--------------------------S----
------------S------SS------------------------S------S-S-------------------------
---------------------S---------------S-----S-----------SSSSSSS--S----------S----
------------------S-------------------------------------------------------------
------------S-------S--S------S-------S--S-----S--------------------------------
---------------S--S-----S---S--S------------------------------S---------------S-
-------S---------S-----S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--SS-----S-----S------SSSS-SSS--------
--------------------------------------------------------------------------------
---------------------------------------------------S-----S----------------------
---S---SS----------S-S-----------------SSS-------------------------S------------
---------------------------S----------------S---S---S---S-----S---------SS-S-S--
SSS------------S--S--S----------S------------------SSSS--SS-SS-S-S-SSSSS-SSSSS-S
SS-SSSSSS-S-S-S-SS--------------------------------------------------------------
----------------S------------------S-------S--------------------------------SS--
----------------------------------------------------S-S----------SS----S-------S
--S-----S----------------S-SS------S-SS-S-S---------------------S--------S------
------------S-----S---------------------------------S-----S--------S------------
----SS-------S-------------S--S-S-------------------SS-----SS-------S-----------
--SSSSSS-------S-S-S-------------SS-------------S-------S-S------S--------------
------S----------------S-----------S--S-SS-SSSS-----------------------S---------
---------S----------------------------------SSS--------S-------------------S----
-------------S-----SS------------------SSSSSS--------S--------------------------
---S------------------------------------------------------------------------S---
---------------------S-----S--------------S-----------S-------
>forward_743
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GAGATCTCGACGCGGAAACA---------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3748
--------------------------------------------------------------------------------
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-------------------------------------------------------------------GCCATCGATGCAG
GTTTTGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_3578
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--------------------------------------CACTGCGGCTTTTGGTCATC----------------------
--------------------------------------------------------------------------------
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>reverse_6108
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---------------------------GGTCTCCTACAGCATCAGCC---------------------------------
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--------------------------------------------------------------
>forward_5704
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----AGGAGCATTGGCCGAAATGA--------------------------------------------------------
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>reverse_6839
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--------------------------------------ACGTACGGGTACTTACAGAGC---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------
