>input_sequence_26620
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------------------CTACGACACGTTTCTTTCTCTCTCCCTCTCCC------------------CTCGGCTACCAA
GGCGTCTCTCTCTTCTCCAAGGAGGCTCTCGATTTGCATGGACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGAC
TGCTAGCCCTGGACGCCTCGCCGCGGCAGCTCGGCTTCTTGAACTTGCTATCGCCGGCGCCGTTCCATAGGAGCATGGAG
GCGGACGACGGCGGAGGCGGTGGCGGCGGCGGCAGGGGGAGGAGGTCCATCGAGGTTGACTTCTTCTCCGACGAGAAGAA
GAACATGAAGAAGAGCCGGGCTTCGGCCGGGGCCGACGCGGAGGACCACAAGGATCAAGCCTCCGCCGCCGGACTCGCCA
TCAAGAAGGAGGACCTCACCATTAACGTACGTCCGTCACCGCTTCTTCACCCATTCTTCTTCCTTGTTAAATGGCAAGAC
TTGGCAGCCGGCACTGCT---TGTTTTTCTATATATATATATGTACGGCGATCTAATACTTACCTTTCGATCCTGCAGCT
CCTTCCCGGGAACAACACGAGGAGCGACCGGTCCATGGTGGTCGACGACGACGGAGCGTCCCGGGCCGACCAAGACAGGA
ACGGCAGGAACACCGGCGAGGTACGTAGTTATCCATGATCTGTCCA------TACAATCTCGGTCTCGTCGATTAGCGTT
GTCGACGGCGAACATGGTGGATCTGGCCGGTGGTGTTTGACTCGATCGGTATTAACTTACGCGTGTCGCGTCCTGCAGCT
GGCGGTGATACAGGCCGAGCTGAGCCGCATGAACGAGGAGAACCAGCGGCTGCGAGGGATGTTGACCCAGGTCAACAACA
GCTACCATGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGACCCAGATGCCTCCGGTCCAGCCGCAACAACCT
CCGACCCACGAGGTACTATTCTTACTCCTCT-AACCTAGCTAGGGATCACTAG-TTGACTTGGCCAAGAAATTTACTCAA
TCAATTCCTCTTTTTCCGTTTTTATTAGGATGGCAAGAACGAGAGTGCCATCGTGCCGAGGCAGTTCCTGGGTCTGGGCC
CGTCGGGAGCCAGCGCTGACGTGGCGGAAGAGCCCTCCAACTCGTCCACGGAGGTCGGGAGCCCGCGGCGGTCGTCGTCC
AACGGAAACGAGGACCCTGAGCGCGGCGAAAACCCTGACGGCCCGTCCACCGCGGGGTGGTTGCCCGGACGCGGGATGAG
C---CAGCAGCAGCAGCAGCAGCTGGGGGCGGCGGCGAAGGGCCACGACCAGCAAGCGCAGGAGGCCACCATGAGGAAGG
CCCGTGTCTCCGTTCGCGCCCGATCCGAAGCCCCGATTGTGAGCCTGCTTCTTGTTCTTCTTGATCATTTCCTAGTTTTT
GCACTTGCAATCTTGACTAGT-------CCTTGTGTATGAATCGTGCTGACCTTACCGTACGTGCATGGGTGCAGATCGC
CGATGGATGCCAATGGAGGAAGTACGGTCAGAAGATGGCCAAGGGAAACCCTTGCCCACGCGCCTACTACCGGTGCACCA
TGGCCACCGGCTGCCCGGTGCGCAAGCAGGTACTCCTAAAGGCATGTACAATGGTTTTATCTTAGCAATGCCATGTAGGA
TAGATGATGAGGTGGAGGAAAGAGAACTCATAAGAATAGACTTGTCTTCTCTTATTTAAGAGAAGACAAGAGGTGATCTC
TTAGCACAATATGTCTCACCACAATTTTAGGAATTACTAGTTATTGAAGATAAGGCTAAGATATGACCCATTGTAGACAA
AAAAATTTACCATCTCTAAATCACATGCAAGACTTAAAATAAGACTATCTTATCAACCATTGTACATGCCCTAAGTCCTA
ACTAACTAGCCACGACTGGCTCGCTTCTTGGTCAAAGGTGTACGTCCGGAAGTAGCGTATCGGGGACGGGGTGTATGATT
GGTCTAACTTTTTTCTTTATGCGTGATGCCATTGACTAACAGGTGCAACGATGCGCCGAGGACCGGACCATCCTCATCAC
CACGTACGAGGGCACGCACAACCACCCGCTCCCGCCGGCCGCCATGGCCATGGCGTCTACCACGTCGGCCGCTGCGTCCA
TGCTGCTCTCCGGCTCCATGCCCAGCGCCGACGGCGCGGGGCTCATGAGCTCCAACTTCCTCGCGCGCACCGTGCTTCCG
TGCTCGTCCAGCATGGCCACCATCTCGGCGTCCGCGCCGTTCCCGACGGTCACGCTCGACCTCACCCACGCCCCGCCCGG
GGCGCCCAACGCCATGCCGCTAAACGTCGCCCGACCGCATGCACCGGGGCAGTTCCATGTTCCGATGCCCGGCGGTGGGA
TGGCCCCGGCCTTCGCGATGCCGCCGCACATGCTGTACAACCAGTCCAAGTTCTCTGGGCTGCAGATGTCCTCCGACTCG
GTGGACGCCGGGCAGTTCGCGCAGCCTAGGCCGCCGATGGGCCTGCCAGGCCAGCTGTCAGACACCGTCAGCGCAGCGGC
GGCTGCGATCACCGCGGACCCAAACTTCACCGTGGCGCTCGCGGCGGCCATCTCGTCGATCATGGCCGGCCAGCACGCCG
CCGGCAACAGCAACGCGAACAACAGCAATAATAACACCAGTAACAACAACGTGACGACGACCAGTAACAACACGACGAGC
AACAACACCAACAGCGAGACTCAATGAACGGCTTCGTCAAGTTCGGAA-AGAGTTGAGAAGCCAGA---TAGCTAGGTTG
CAAGTTATACACGGATGGTGTTCCATTCTTCTTTGGTCAGGATTAGCTTCTCGAGACGTTTCTTTGGTTTTGATACCAAG
CATTATATACGATCACCCTTTTTCTTTCGTGATTTTGCGGCGGCAAAAAAACAAAGTTGTATTA----------------
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-----------------------------------
>chr3B_1_TraesCS3B01G199000
AGAGGCGATTAAGAAAACGGGGGAGATCCGAGTCTGCTGTGCGTGTGGACTCGCGACCCCGTGCCGATCAATCAGGCAGG
GCAGCCTCAGGATCGGCACCAGCTCGTTTCTGACTAGTACTAGTAGTA--------------------------------
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---------------------------------------------------------------GTTTTAGTCTAGACCTG
ACCTGCTCCGTACCGTTTTTCCATTTTGTTGGGGCGAGTAATCTAATGGGAGGAACCTTCTGACCGTGGAAAAACTCCAT
TCCTCGTGCAGTACGTGCTGACCTCAATATTCTTTCTCAATAGCAAAAGAGAATTGCTC-------AACAAACCAAAGAG
AAGAGGCCCCATATTTGTGCACAACAAA------------CCCATACACATAGTAGTTTTTTTTTTTTTGCAGGAATATA
CAAATGGCGAGTCATCGATCGATCGGCGGTGAGATCTGGCGCCACGCA-GGTTTGATAGACCATACTATACTAGCCCTAG
TAGCTAGCAGCTGGCCTGGTAGCAAATGTTGGTTAAAACGCTACCCCTAGTAAACATTTTCCATC-TTGCGAAAATATGC
GTGTTACTTATAGGAGCCGGCGACGGCGGCCCGCGGTATCAACAACGCGATGTTGAAAATCGTTGGACCGACAGGCGAAG
TCGCCATTGCAGACCGGAAAAAGGAG---------------------CGCTTTGCGTTGCACGGGGCACGTCCCTGTCGC
CCCGCCCATAAATTTCCCGATTTCTTAACGAGCCGGGCTTCTGATCCGTGGAGAAAAGTTGCAAGCCGGGG-AGGAAAAG
CGCAGACAAGCACGAAAATAACATGGAGCCAAAGCCCAGCCAGCTGCCGTCCGTCTCCGCCTCGCCGGAAAGGGCGATCC
GGTCCTCGTGGGCCCGGGATCGGGTCGTCGTCCCTCCCGCCACTCCTGCCGCGCCACGTGGGCCCCCGCACTGACGCAGC
GCCTGATGTCAGATCTGGGCCTCCCAGCCAGCTCGCCCTTTTTTATACGCGCCCCGTCCTACCGGGGAGAGACTTCAGAC
TCCTCCCTCTTTCGGTCTCTACGACACGTTTCTTTCTCTCTCCCTCTCCC------------------CTCGGCTACCAA
GGCGTCTCTCTCTTCTCCAAGGAGGCTCTCGATTTGCATGGACAAGGGCCACCTCGGTGGTGGCGGAGGAGGAGGAGGAC
TGCTAGCCCTGGACGCCTCGCCGCGGCAGCTCGGCTTCTTGAACTTGCTATCGCCGGCGCCGTTCCATAGGAGCATGGAG
GCGGACGACGGCGGAGGCGGTGGCGGCGGCGGCAGGGGGAGGAGGTCCATCGAGGTTGACTTCTTCTCCGACGAGAAGAA
GAACATGAAGAAGAGCCGGGCTTCGGCCGGGGCCGACGCGGAGGACCACAAGGATCAAGCCTCCGCCGCCGGACTCGCCA
TCAAGAAGGAGGACCTCACCATTAACGTACGTCCGTCACCGCTTCTTCACCCATTCTTCTTCCTTGTTAAATGGCAAGAC
TTGGCAGCCGGCACTGCT---TGTTTTTCTATATATATATATGTACGGCGATCTAATACTTACCTTTCGATCCTGCAGCT
CCTTCCCGGGAACAACACGAGGAGCGACCGGTCCATGGTGGTCGACGACGACGGAGCGTCCCGGGCCGACCAAGACAGGA
ACGGCAGGAACACCGGCGAGGTACGTAGTTATCCATGATCTGTCCA------TACAATCTCGGTCTCGTCGATTAGCGTT
GTCGACGGCGAACATGGTGGATCTGGCCGGTGGTGTTTGACTCGATCGGTATTAACTTACGCGTGTCGCGTCCTGCAGCT
GGCGGTGATACAGGCCGAGCTGAGCCGCATGAACGAGGAGAACCAGCGGCTGCGAGGGATGTTGACCCAGGTCAACAACA
GCTACCATGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGACCCAGATGCCTCCGGTCCAGCCGCAACAACCT
CCGACCCACGAGGTACTATTCTTACTCCTCT-AACCTAGCTAGGGATCACTAG-TTGACTTGGCCAAGAAATTTACTCAA
TCAATTCCTCTTTTTCCGTTTTTATTAGGATGGCAAGAACGAGAGTGCCATCGTGCCGAGGCAGTTCCTGGGTCTGGGCC
CGTCGGGAGCCAGCGCTGACGTGGCGGAAGAGCCCTCCAACTCGTCCACGGAGGTCGGGAGCCCGCGGCGGTCGTCGTCC
AACGGAAACGAGGACCCTGAGCGCGGCGAAAACCCTGACGGCCCGTCCACCGCGGGGTGGTTGCCCGGACGCGGGATGAG
C---CAGCAGCAGCAGCAGCAGCTGGGGGCGGCGGCGAAGGGCCACGACCAGCAAGCGCAGGAGGCCACCATGAGGAAGG
CCCGTGTCTCCGTTCGCGCCCGATCCGAAGCCCCGATTGTGAGCCTGCTTCTTGTTCTTCTTGATCATTTCCTAGTTTTT
GCACTTGCAATCTTGACTAGT-------CCTTGTGTATGAATCGTGCTGACCTTACCGTACGTGCATGGGTGCAGATCGC
CGATGGATGCCAATGGAGGAAGTACGGTCAGAAGATGGCCAAGGGAAACCCTTGCCCACGCGCCTACTACCGGTGCACCA
TGGCCACCGGCTGCCCGGTGCGCAAGCAGGTACTCCTAAAGGCATGTACAATGGTTTTATCTTAGCAATGCCATGTAGGA
TAGATGATGAGGTGGAGGAAAGAGAACTCATAAGAATAGACTTGTCTTCTCTTATTTAAGAGAAGACAAGAGGTGATCTC
TTAGCACAATATGTCTCACCACAATTTTAGGAATTACTAGTTATTGAAGATAAGGCTAAGATATGACCCATTGTAGACAA
AAAAATTTACCATCTCTAAATCACATGCAAGACTTAAAATAAGACTATCTTATCAACCATTGTACATGCCCTAAGTCCTA
ACTAACTAGCCACGACTGGCTCGCTTCTTGGTCAAAGGTGTACGTCCGGAAGTAGCGTATCGGGGACGGGGTGTATGATT
GGTCTAACTTTTTTCTTTATGCGTGATGCCATTGACTAACAGGTGCAACGATGCGCCGAGGACCGGACCATCCTCATCAC
CACGTACGAGGGCACGCACAACCACCCGCTCCCGCCGGCCGCCATGGCCATGGCGTCTACCACGTCGGCCGCTGCGTCCA
TGCTGCTCTCCGGCTCCATGCCCAGCGCCGACGGCGCGGGGCTCATGAGCTCCAACTTCCTCGCGCGCACCGTGCTTCCG
TGCTCGTCCAGCATGGCCACCATCTCGGCGTCCGCGCCGTTCCCGACGGTCACGCTCGACCTCACCCACGCCCCGCCCGG
GGCGCCCAACGCCATGCCGCTAAACGTCGCCCGACCGCATGCACCGGGGCAGTTCCATGTTCCGATGCCCGGCGGTGGGA
TGGCCCCGGCCTTCGCGATGCCGCCGCACATGCTGTACAACCAGTCCAAGTTCTCTGGGCTGCAGATGTCCTCCGACTCG
GTGGACGCCGGGCAGTTCGCGCAGCCTAGGCCGCCGATGGGCCTGCCAGGCCAGCTGTCAGACACCGTCAGCGCAGCGGC
GGCTGCGATCACCGCGGACCCAAACTTCACCGTGGCGCTCGCGGCGGCCATCTCGTCGATCATGGCCGGCCAGCACGCCG
CCGGCAACAGCAACGCGAACAACAGCAATAATAACACCAGTAACAACAACGTGACGACGACCAGTAACAACACGACGAGC
AACAACACCAACAGCGAGACTCAATGAACGGCTTCGTCAAGTTCGGAA-AGAGTTGAGAAGCCAGA---TAGCTAGGTTG
CAAGTTATACACGGATGGTGTTCCATTCTTCTTTGGTCAGGATTAGCTTCTCGAGACGTTTCTTTGGTTTTGATACCAAG
CATTATATACGATCACCCTTTTTCTTTCGTGATTTTGCGGCGGCAAAAAAACAAAGTTGTATTAGTTCATTCCTTCCCCT
TAGTTCTTTT-TC-ATCGCCCGCAGCTGTTGATATTTCACTGTAATAATTATAA---CTACAGTAATAAGTAAAATAATG
GCG----CCTCAGAGA----------------------------------------------------------------
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--------------------------------TATATCTATGCTAGTCAAAGCAGAAGAAATGT-GGGGGTAAAGAACAA
GGACAGCCTACCGGATGCTCATCTACGTGTTTGTTCACATCTTGACATTTTTTTCCACCCCCTCTCCCCTTTCCGG--CT
CTCTTGTCTTGGCTTGTTTTACCTTCTTCTCGTTGGCATTTTCATACAAGTCGCTGCCCAGCCGGCTCGCTCGGATGTGA
ATGTGATCTCGTCATCGGTCCCGCGTAGACCAAGTCAGCAGGCCGGGGCCCGCCACGTAACACGCCTGCTGT-ACTGTTG
GTCAGTTCGTCCCCATTTGAAT-----AGTACATCACATGCTTGATGCCTGCAACGTTGCACGTACCTAA----ACTTTT
TAGTTTGAATGAAATTTGAACATGTACGGGAAGCTC-----TGCATGGGGAGCACTC-----------------------
----CAAGGACTCGCAGTCTCAGTTAAGCTGGTGTGGGTTTG--------------CCTGCCTGGCGCGTAGCTGGGCGT
CGTGGGCATGGGCGCAGCGCAGGGAGGGAAACTCATGGTGCGACGCGAGGCGGCACGGGGAAAATGTGGCACCCGGAA--
----GGGGAGAAATCATGGGGACCCTCGGCGTGGATCTGGCACGGCACGGAGCTTTGGTGTCTCGTCGTCGTCGGCGTCG
CGTCGTCTGTGGACTTGGAGGCATGGGGCGTTTTCAAGTGGGGCCCGCGGCGGTATC-GGTATCGGGGGAGGCGATTACG
TACGGGACAGTTGGAGGTGTTGACCTGGTCCCCATACGCAGCACGTAAACGGGTGGGGTCTCGCGCGCAGCTGTGGCCTC
GTCTTGCTGCCGCCAGCCGTCTCTGGGACGGTCACCACCGTCCACCGGCTTCGGCTTTGGCTTTGCTTGCTCGCGCGCTT
GCGGTCGGACTTTACGGCGGGGTCTACGAGATTTT
>chr3A_1
AGAGGCGATTAAGAAAACGGGGGAGATCCGAGTCTGCTGTGCGTGTGGACTCGCGACCCCGTGCCGATCAATCAGGCAGG
GCAGCCTCAGGATCGGCACCAGCTCGTTTCT-------------------------------------------------
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--------------------------------------------------------------------------GACCTG
ACCTGCTCCGTACCGTTTTTCCATTTTGTTGGCGCGAGTAATCTAATGGGAGGAACCTTCTGACCGTGGAAAAACTCCAT
TCCTCGTGCAGTACGTGCTGACCTCAATATTCTTTCTCAACAGCAAAAAAGAATTGTTCGTTGTTCAACAAACAAAAGAG
AGGATGCCCCATATTTGTGCACAACAAAAGAGAAGAGG-CCCCATACACATAG----TTTTTTTTTGGTG----------
-AAATGGCGAGACATCGATCAACGGACGGTGTGATCTGACGCCACGCAGGGTTGGATAGACCTTATTACTACCGCCTGTA
GCCA-------------------AAATGTTGGTTAAAAAGCTACTCCTAGTAAACATTTCCCATTATTGCGAAAATGTGC
GTGTTACTTGTACGAGGCGGCGACGGCGGCCCGCGGTATCAACAACGCGATCTTGAAAATCATTGGACCGACAGGCGAAG
TCGCCATTGCAGACCGGAAAAAGGAGACGCAGCGC-----CCCACGTCGCTTT--GTTGCACGGGGCACGTCGCCGTCGC
CCCGCCCATAAATTTCCCGATTTCTTAACGAGCCGGGCTTCTGATCCGTGGAGAAAAGTTGCAAGCCGGGGGAGGAAAAG
CGCAGACAAGCACGAAAATAACATGGAGCCAAAGCCCAGCCAGCTGCCGTCCGTCTCCGCCTCGCCGGAAAGGGCGATCC
GGTCCTCGTGGGCCCCGGATCGGGTCGTCGTCCCTCCCGCCACTCCGGCCGCGCCACGTGGGCCCCCGCACTGACGCAGC
GCCTGATGTCAGATCTGGGCCTCCCGGCCAGCTCGCCCTTTTTTATACGCGCCCCGTCCTACCGGGGAGAGACTTCAGAC
TCCTCCCTCATTCGGTCTCTACGACACGTTTCTTTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCTCGGCTAGCAA
GGCGTCTCTCTCTTCTCCAGGGAGGCTCTCGATTTGCATGGACAAGGGCCACCTCGGTGGCGGCGGAGGAGGAGGAGGAC
TGCTCGCCCTGGACGCCTCGCCGCGGCAGCTCGGCTTCCTGAACTTGCTATCACCGGCGCCGTTCCACAGGAGCATGGAG
GCGGACGACGGCG---GCGGTGGCGGCGGCGGCAGGGGGAGGAGGTCCATCGAGGTTGACTTCTTCTCCGACGAGAAGAA
GAACATGAAGAAGAGCCGCGCATCGGCCGGTGCTGACGCGGAGGACCACAAGGATCAGGCCTCCGCCGCCGGACTCGCCA
TCAAGAAGGAGGACCTCACCATTAACGTACGTCCGCCACCGCTTCTTCACCCATTCTCCTTACTTCTTAAATGGCTAGAC
TTGCCAGCAGGTACTACTACTTGTTTCTCTCTATA--------TACGGCGATCTAATACTTGCCTTTCGATCCTGCAGCT
CCTTACCGGGAACAACACGAGGAGCGACCGGTCCATGGTGGTCGACGACGACGGGGCGTCCCGGGCCGACGAGGACAGGA
ACGGCAGGAACACCGGCGAGGTACGTAGTTATCCACGATCTGTCCACACAATTACAATCTCGATCTCGTCGATTAGCGTT
GTCGACGGCGAACATGGTGGATCTGGCCGGTGATGTTTGACTCGATCGGTATTAACTTACGCGTGTCGCGTCCTGCAGCT
GGCGGCGATGCAGGCCGAGCTGAGCCGCATGAACGAGGAGAACCAGCGGCTGCGAGGGATGTTGACCCAGGTCAACAGCA
GCTACCATGCGCTGCAGATGCATCTCGTCGCGCTCATGCAGCAAAGGACCCAGATGCCTCCGGTCCAGCCGCAACAACCT
CCGACCCACGAGGTACTATTCTTACTTG--T-AACCTAGCCAGGGATCGCTAGTTTGACTTGGCCAAGAAATTTACTGAA
TCAGTTCCTCTTTTTCCGTTTTTATTAGGATGGCAAGAACGAGAGTGCCATCGTTCCGAGGCAGTTCCTGGGTCTGGGCC
CGTCCGGAGCCAGCGCTGACGTGGCGGAAGAGCCGTCCAACTCGTCCACGGAGGTCGGGAGCCCGCGCCGGTCGTCGTCC
AACGGGAACGAGGACCCTGAGCGCGGCGACAACCCCGACGGCCCGTCCACCGCGGGGTGGTTGCCCGGGCGCGGGATGAG
CCAGCAGCA---GCAGCAGCAGCTGGGAGCGGCGGCCAAGGGCCATGACCAGCAAGCGCAGGAGGCCACCATGAGGAAGG
CCCGTGTCTCCGTCCGCGCACGATCCGAAGCCCCGATTGTGAGACTGCTTCTTCTTCTTCTTGATCATTTTCTTGTTTTT
GCACTTGCAATCTTGAGTAGT-------CCTTGTGTATGGATCGTGCTGACCTTACCGTACGTGCATGGCTGCAGATCGC
CGATGGATGCCAATGGAGGAAGTACGGTCAGAAGATGGCCAAGGGAAACCCTTGCCCACGCGCCTACTACCGCTGCACCA
TGGCCACCGGCTGCCCGGTGCGTAAGCAGGTAC-----------------------------------------------
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---------------------------------------------------------------------------TCCTA
ACTAACTGGCCACGACTGGTTCGCTTCTTGGTCAAAGGTGTACGTCCGGAAGTAGCGTATCGGGGACGGGGTGTATGATT
GGTCTAACTTTCTTCTTTATGCGTGATGCCATTGACTAACAGGTGCAACGATGCGCCGAGGACCGGACCATCCTCATCAC
CACGTACGAGGGCACGCACAACCACCCGCTCCCGCCGGCCGCCATGGCCATGGCATCCACTACGTCGGCCGCCGCGTCCA
TGCTGCTCTCGGGCTCCATGCCCAGCGCCGACGGCGCGGGCCTCATGAGCTCCAACTTCCTCGCGCGCACCGTGCTGCCA
TGCTCGTCCAGCATGGCCACCATCTCGGCGTCCGCGCCGTTCCCGACGGTGACGCTCGACCTCACCCACGCCCCGCCCGG
GGCGCCCAACGCCATGCCGCTGAACGTCGCCCGACCGCATGCACCGGGGCAGTTCCATGTTCCGATGCCCGGCGGTGGGA
TGGCCCCGGCCTTCGCGATGCCGCCGCACATGCTGTACAACCAGTCCAAGTTCTCTGGCCTGCAGATGTCCTCCGATTCG
GTGGACGCCGGGCAGTTCGCGCAGCCTAGGCCGCCGATGGGCCTGCCAGGCCAGCTGTCCGACACCGTCAGCGCAGCGGC
GGCCGCGATCACCGCGGACCCAAACTTCACAGTGGCGCTCGCCGCGGCCATCTCGTCGATCATGGCCGGCCAGCACGCCG
CCGGCAACAGCAACGCGAACAACAGCAACAACAACACCAGTAACAACAACGTGACGACGACTAGTAACAACACGACGAGC
AACAACACCAACAGCGAGACCCAATGAACGACCTGGTCAAGTTCGAAA-AGAGTTGAGAAACCAGATACTAGCTAGGTTG
CAAGTTATACACGGATGGTGTTCCATTCTTCTTTGGTCAGGATTAGCTTGTCGAGACGTGTCTTTGGTTTTGATACCAAG
CATGATATACGATCACCCTTTTTCTTTCGTGATTTTGCGGCGGCAAAAAAAAG--GTTGTATTAGTTCATTCCTTCCCCT
TAGTTCTTTT-TCCATCGCCGGCAGCTGTTGATATTTCACTGTAATAATTATAATAACTATAGTAATAAGTAAAATAATG
GCCCCCACCTCGGAGA----------------------------------------------------------------
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--------------------------------TATTTCTATGCTAGTCAAAGCAGAAGAAATGC-GGGGGTAAAGAACAA
TGACAGCTCACCGGATGCTCATCTACGTGTTTGTTCACATCTTGAGATTTTTTTGCA-CCCCTCTCCCCTTTCTGGCTCT
CTCTTGTCTTGGCTTGTTTTACCTTCTTCTCGTTGGCATTTTCAAACAAGTCGCTGCCCGGCCGGTTCGCTCGGATGTGA
ACGTGATCTCGTCATCGGTCCCGCGAAGACCAAGTCAGCAGGCCGGGGCCCGCCACGTAACACGCCTGCTGTTACTGTTG
GTCAGTTCGTCCCCATTGAACAGTAGGAGTACATCACATGGTTCGTGCCTGCAGCGTTGCATGTACCTA----TACTTTT
TAGTTTGAATGGAGTTTGAACACGTACGGGAAAGCTCTGCATGCATGGGGAGCACTCTTCCAAATAGATATATCCATCCA
ACCCCAAGGACTCGCAGTCTGAGTTAAGCTGGCCTGGGTCTGCCTGCCTGGCGCGTCCTGCCTGGTGCGTAGCAGGGCGT
CGTGGGCATGGGCGCAGCGCATGGAGGGAAACTCATGGCGCGACGCGTGGCGGCACGGGGAAAATGTGGCGCGCGGAA--
----GGGGAGAAATCATGGGGTC----------GATCTGGCACGGCACGGAGCTG-GGTGTCTCGTCGTCGTCGGCGTCG
CGTCGTCTGTGGACTCGGAGGCATGGGGCGTTTTCACGTGGGGCCCGCGGCGGTATCGGGTACCGGGGGAGGCGATTACG
TACGGGACAGTTGGAGGTGTTGACCCGGTCCCCATACGCAGCACGTAAACGGGTGGGGTCTCGCGCGCAGCTGTGGCCTC
GTCTTGCTGCCGCCTGCCGTCTCTGGGACGGTCACCACCGTCCACCGGCTTCGGCTTTGGCTTTGCTTGCTCGCGCGCTT
GCGGTCGGACTTTGCGGCGGGGTCTACGAGATTTT
>chr3D_13
------------GAAAACGGGGGAGATCCGAGTCTGCTGTGCGTGTGGACTCGCGACCCTGTGCCGATCAATCAGGCAGG
GCAGCCTCAGGATCGGCACCAGCTCGTTTCTGACTAGTAGTTTTAGGGGGCGTTTGTTTGCAGGGACTCTTTTTTGTAGG
ATCGACACCAGCTTGTCTCTTAGAGACTTTTTTTACCAAACGGGAGGAACTTTTTACAACGTGTTTGGTAACGACAGGGA
GAGGGCATGGGAGTTTAGCGATGGAAATTTGCCAAGGGATTATACATGGGAAGTTGATTTGAAGTCTCATTTCTCTGTTT
GGCATGTGGAGGCAATTAAATGTGGGAATTTAAGAGATAATTAACTGCCCCTATTTAGTTGGTGGGATTAGGCAGAGAAA
TAACCAACTTTTAACATGAAAGGCCACCCCTCACCACGTCCCAACCAACAAAACGTTTTTTTTCTCTGTCAATTCCCAAT
CCCAGGTTAAATTACCAGGGTCCCCCTAGGGAAGATATTTGAATGAGTTGGGCCTCTTAACTCCCCTTCCCCTTCCCTTT
TTAATTCCCATGTCCCTGAGTCAATCAAAGGACTTAAAGTGCCACTTACCTTAAACTCCCATTCCTATCTTCAACTCCCC
CCAACCAAACACGCTGTAGGGACTAAACTAGGCATACTAAATGAAGAAGACTCTCAAGGAGAGTCTTTTTTAGGATTTTT
GGGACTTTTCCAACAATGCTCCTCCATGCATCCATTGGCCCGCCACCCCATGGTGTTGTTTGATTGTTTTTTTTATACTA
AGGGCAACATGGTCATTTAATAACCTTTAGAAGGGGACTAGGGACTTTTTAGTCTCTGAAAACAAAGAGGAAGGGACTTT
TTAGGGACTAGGGACTTTTTAGTTGGGATTAGAAAAAGTCTTAGGACTTATGAACTAAACAGGGTCTTAGTTTAGACCTG
ACCTGCTCCGTACCGTTTTTCCCTTTTGTTGAGGCGAGTAATCTAATGGGAGGAACCTTCTGCCCGTGGAAAAACTCCAT
TCCTCGTGCAGTACGTGCTGACCTCAATATTCTTTCTCAATAGCAAGAGAGAATTGCTC-------AACAAACGAAAGAC
AAGAGGCCCCATATGTGTGCACAACAAAAGAGAAGAGAACCCCATTCACATAG----TTTTTTTTTTTTGCAGGAATGTA
CAAATGGCGAGTCATCGATCGATCGACGGTGAGATCTGGCGCCACGCAGGGTTTGATAGACCATACTATACTAGTCCTAG
TAGCAAGCAGCTGGCCTGGTAGCAAATGTTGGCTAAAAGGCTACCCCTAGTAAACATTTCCCATT-TTGCGAAAATGTGC
GTGTTT--------AGCCGGCGACGGCGGCCCGCGGTATCAACAACGCGATGTTGAAAATAGTTGGACCGACAGGCGAAG
TCGCCATTGCAGAC-GGAAAAAGGAGACGCAGCGGAGCGGCCCCCGTCGCTTTGCATTGCACGGGGCACGTCCCCGTCGC
CCCGCCCATAAATTTCCCGATTTCTTAACGAGCCGGGCTTCTGATCCGTGGAGAAAAGTTGCAAGCCGGGG-AGGAAAAG
CGCAGACAAGCACGAAAATAACATGGAGCCAAAGCCCAGCCAGCTGCCGTCCGTCTCCGCCTCGCCGGAAAGGGCGATCC
GGTCCTCGTGGGCCCGGGATCGGGTCGTCGTCCCTCCCGCCACTCCGGCCGCGCCACGTGGGCCCCCGCACTGACGCAGC
GCCTGATGTCAGATCTGGGCCTCCCAGCCAGCTCGCCCTTTTTTATACGCGCCCCGTCCTACCGGGGAGAGACTTCAGAC
TCCTCCCTCTTTCGGTCTCTACGACACGTTTCTTTCTCTCTCCCTCTCCC------TCTCCCTCTCCCCTCGGCTAGCAA
GGCGTCTCTCTCTTCTCCAGGGAGGCTCTCGATTTGCATGGACAAGGGCCACCTCGGTGGCGGCGGAGGAGGAGGAGGAC
TGCTCGCCCTGGACGCCTCGCCGCGGCAGCTCGGCTTCTTGAACTTGCTATCGCCGGCGCCGTTCCACAGGAGCATGGAG
GCGGACGACGGCGGT---GGTGGCGGCGGCGGCAGGGGGAGGAGGTCCATCGAGGTTGACTTCTTCTCCGACGAGAAGAA
GAACATGAAGAAGAGCCGGGCATCGGCCGGTGCCGACGCGGACGACCACAAGGATCAGGCCTCCGCCGCCGGACTCGCCA
TCAAGAAGGAGGACCTCACCATTAACGTACGTCCGCCACCGCTTCTTCACCCATTCTTCTTCCTTCTTAAATGGCAAGAA
GGC------------ACTGCTTGTTTTTCTATATA--------TACGGCGATCTAATACTTACCTTTCGATCCTGCAGCT
CCTTCCCGGGAACAACACGAGGAGCGACCGGTCCATGGTGGTCGACGACGACGGGGCGTCCCGGGCCGACGAGGACAGGA
ACGGCAGGAACACCGGCGAGGTACGTAGTTATCCATGATCTGTCCA------TAAAATCTCGATCTCGTCGATTAGCGTT
GTGGACGGCGAACATGGTGGATCTGGCCGGTGATGTTTGACTCGATGTGTATTAACTCACGCGTGTCGCGTCCTGCAGCT
CGCGGCGATGCAGGCCGAGCTGAGCCGCATGAACGAGGAGAACCAGCGGCTGCGAGGGATGTTGACCCAGGTCAACAACA
GCTACCATGCGCTGCAGATGCATCTCGTCGCGCTAATGCAGCAAAGGACCCAGATGCCTCCGGTCCAGCCGCAACAACCT
CCGACTCAGGAGGTACTATTCTTACTACTCTAAACCTAGCTAGGGATCACTAGTTTGACTTGGCCAAGAAATTTACTGAA
TCAATTCCTCTTTTTCCGATTTTATTAGGATGGCAAGAACGAGAGTGCCATCGTGCCGAGGCAGTTCCTGGGTCTGGGCC
CGTCGGGAGCCAGCGCTGACGTGGCGGAAGAGCCGTCCAACTCGTCCACGGAGGTCGGGAGCCCGCGCCGGTCGTCGTCC
AACGGGAACGAGGACCCTGAGCGCGGCGACAACCCTGACGGCCCGTCCACCGCGGGGTGGTTGCCCGGGCGCGGGATGAC
C---CAGCA---GCAGCAGCAGCTGGGAGCGGCGGCAAAGGGCCACGACCAGCAAGCGCAGGAGGCCACCATGAGGAAGG
CCCGTGTCTCCGTTCGCGCACGTTCCGAAGCCCCGATTGTAAGACTACTTC---TTCTTCTTGATCATTTTCTAGTTTTT
GCTCGAACGGAGACACGGGCCTTGAGTCCCTTGTGTATGAATCGTGCTGACTTTACCGTACGTGCATGGCTGCAGATCGC
CGATGGATGCCAATGGAGGAAGTACGGTCAGAAGATGGCCAAGGGAAACCCTTGCCCACGCGCATACTACCGCTGCACCA
TGGCCACCGGCTGCCCGGTGCGCAAGCAGGTAC-----------------------------------------------
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---------------------------------------------------------------------------TCTTA
ACTAACTGGCCACGACTGGTTCGCTTCTTGGTCAAAGGTG-ACGTCCGGAAGTAGCGTATCGGGGACGGGGTGCATGATT
GGTCTAACTTTTTTCTTTATGCGTGATGCCATTGACTAACAGGTGCAACGATGCGCCGAGGACCGGACCATCCTCATCAC
CACGTACGAGGGCACGCACAACCACCCGCTCCCGCCGGCGGCCATGGCCATGGCGTCCACCACGTCGGCCGCTGCGTCCA
TGCTGCTCTCCGGCTCCATGCCCAGCGCCGACGGCGCGGGGCTCATGAGCTCCAACTTCCTCGCGCGCACCGTGCTGCCG
TGCTCGTCCAGCATGGCCACCATCTCGGCGTCCGCGCCGTTCCCGACGGTCACGCTCGACCTCACCCACGCGCCGCCCGG
AGCGCCCAACGCCATGCCGCTAAACGTCGCCCGACCGCATGCACCAGGGCAGTTCCATGTTCCGATGCCCGGCGGTGGGA
TGGCCCCGGCCTTCGCGATGCCGCCGCACATGCTGTACAACCAGTCCAAGTTCTCTGGGCTGCAGATGTCCTCCGACTCG
GTGGACGCCGGGCAGTTCGCGCAGCCCAGGCCACCGATGGGCCTGCCAGGCCAGCTGTCCGACACCGTCAGCGCAGCGGC
GGCTGCGATCACCGCGGACCCGAACTTCACCGTGGCCCTCGCCGCGGCCATCTCGTCGATCATGGCCGGCCAGCACGCCG
CCGGCAACAGCAACGCGAACAACAGCAACAACAACACCAGTAACAACAATGTGATGACGACCAGTAACAACACGACGAGC
AACAACACCAACAGCGAGACCCAATGAATGGCCTGGTCAAGTTCGGAAAAGAGTTGAGAAACCAGA---TAGCTAGGTTG
CAAGTTATACACTGATGGTGTTCCATTCTTCTTTGGTCAGGATTAGCTTCTCGAGACGTTCCTTTGGTTTTGATACCAAG
CATGATATACGATCACCCATTTTCTTTCGTGATTTTGCGGCGGCAAAAAAAAG---TTGTATTAGTTCATTCCTTCCC-T
TAGTTCTTTTCTCCATCGCCCGCAGCTGTTGATATTTCACTGTAATAATT---ATAACTATAGTAATAAGTAAAATAATG
GCCCCTCGGAGATATTTCTACGGAAAAACTAACGCCGACACGTGTGGGCGTTTGCATATCGCTCACACGCCTCCATCATC
ACTCATTTTGCCACGTATGAAAAGATGACATCAGCAGAAATCTTTTTGGTTTTCGACTTAAAAATGTTTTATCTCCTAAT
TAGAAAATCAAATTAAAAATCAGTTTTCACCATTAAATTCATCTGGACGAGATCTTTAAAAGTAGACCCCATGTTGATAT
GTTTCGATGAATTTTTTTTTTTGCCCAAAAGTTGCCATGATGTTTAAAGTGTAGTTGCAATAGTGCTTAAACTAAAGTTG
CCATGTGGCAATTTTAGTTTGTAGAGCATGGCAATTTTAGTTTTTTTATGATGGTAATTCCAGTACTTTGACCATAAAAA
TAAATTTTTTGTATGAACCATGGCAATTTTAAGTGCATGTATCATGTCAATTTTGTTTAATGGTGCATGACAAGTTTAGT
TTCTTAATTCTCCGTTTTATAATATGTCAAAATTTACTTTTAAATGTAGAAGAAAATAGTTGAAACATATCATGGCAATT
CATGTGCAATAGACATGACAACTTTTAACCCAAAAAATTTTTGTCGAAATATATTGATACGAGATCTAGTTTCGAAGATC
TCGTCGCAAGGGATTTAATGGTGAAAACGGATCTTCAATCGGATTTTTCATTTAAGAGATAAAACATTTTGTAAACTGAA
AATCGAAAAAGATTCCCACATGCATGCATGCGGTGACATGGCGTAATCTGTGTGTTATAGGGCGTGTGGACGGGTTTGAC
TCCCATCGTACGTGTGGACGTTAGCGTTGTCCTATTTCTATGCTAGTCAAAGCAGAAGAAATGTAGGGGGTAAAGAACAA
TGACAGCTTACCGGATGCTCATCTACGTGTTTGTTCACATCTTGAAATTTTTT-CCACCCCCTCTCCCCTTTCAGG--CT
CTCTTGTCTTGGCTTGTTTTACCTTCTTCTCCTTGGCATTTTCAAACAAGTCGCTGCCCAGCCGGCTCGCTCGGATGTGA
ATGTGAACTCGTCATCGGTCCCGCGAAGACCAAGTCAGCAGGCCGGGGCCCGCCACGTAACACGCCTGCTGTTACTGTTC
GTCAGTTCGTCCCCATTTGAAC-----AGTACATCACATGGTTCAAGCCTGCAGCGTTGCACGTACCTATACTTACTTTT
TAGTTTGAATGGAATTTGAACACGTACGGGA-AGCTCCGCATGCATGGGGAGCACTCTTCCAAATAGATATATCCATCCA
ACCCCAAGGACTCGCAGTCTGAGTTAAGCTGGTGTGGGTTTG--------------CCTGCCTGGCGCGTAGCTGGGCGT
CGTGGGCATGG---------------------------CGCGACGCGAGGCGGCACGGGGAAAATGTGGCGCGCGGAAGG
GAAGGGGGAGAAATCATGGGGA-CCTCGGCGTGGATCTGGCACGGCACGGAGCCG-GGTGTCTCGTCGTCGTCGGCGTCG
CGTCGTCTGTGGACTTGGAGGCATGGGGCGCTTTCGCGTGGGGCCCGCGGCGGTATCGGTATC--GGGGAGGCGATTACG
TACGGGACAGTTGGAGGTGTTGACCCGGTCCCCATACGCAGCACGTAAACGGGTGGGGTCTCGCGCGCAGCTGTGGCCTC
GTCTTGCTGCCGCCTGCCGTCTCTGGGACGGTCACCACCGTCCACCGGCTTCGGCTTTGGCTTTGCTTGCTCGCGCGCTT
GCGGTCGGACTTTGCGGCGGGGTCTACGAGATTTT
>SNPs
--------------------------------------------------------------------------------
---------------------------------------S-SS---SS--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------S-----S--------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------------------------SSSS--------------------S--
-------------------------S------------------------------------------------------
----S---------------------------------S--------------------S----S-----------S---
---------S--S-------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-------------------S----------------------------------------S-------------------
----S--------------------------------------------------------------S------------
--------------SS----------------------------------------------------------------
---------------------S--------S--------------------------S----------------------
-----------------------------------S-----------------------------S--------------
---S----S--S---S-------------------SSSSSSSS-------------------------------------
------------------------------------------------------S---------------S-S-------
--------------------------------------------------------------S-----------------
--------------------------------S-----------------------------------------------
-----S---S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--------------------------------------------------S--
--------------------------------------------------------------------------------
----------------------------------S--------------------------------S------------
-----S-----------------------S--------------------------------------S-----------
---------SSS---------------S--------S-------------------------------------------
-------------------S-----------------------S---------S----------------S---------
----------------S----------------------------------------------------S----------
------------------------------------------------------------------------S-------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------S-----------S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------------------------S-------------------------------------
----------------------------S--S------------------------------------------------
--------------------S-----------S-S-------------------------S-------------------
--------------------------------------------------------------------------------
---S-----------------------------------------------SSSS-------------------------
------------------------------------------------------------S-------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
S------S-------------------------------------S---------------------------S------
--------------------------------------------S-----------------------------------
-------------------------S------------------------------------------------------
---------------------S------------------S--S---------S---------------S----------
-----------S----------S---------SSSS--------------------------------------------
--------------------S-----------------------------------------------------------
---------------------S----------------S-------------------------------S-S-------
------------------------------------------------------SS------------------------
------------------------------------S-------------------------S-----------------
-------------------------S------------------------------------------------------
--------------S-----------------------------------------------------------------
-------------S---------------------
>forward_120
--------------------------------------------------------------------------------
-----------------ACCAGCTCGTTTCTGACTAGTAC----------------------------------------
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-----------------------------------
>reverse_2471
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----------------------------------------------------------------------CAAGACAGGA
ACGGCAGGAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>forward_2218
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--------------------------------------CGGAGGACCACAAGGATCAA----------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_3780
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-------------------CTCGCTTCTTGGTCAAAGGTG----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>forward_3350
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--------------------------------------------------CCTTACCGTACGTGCATGGG----------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_6103
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----------------------TGTACGGGAAGCTCTGCATG--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------
