>input_sequence_26303
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------------------------------------------------------------------------------AT
GGCAAAACTCCCGATAGTTGGTCGCAGGTTCACATGCTTTTTTCCTTTCCCCTCACGGTTATCTGTTTTTAATTATGCTG
CCCTG-TTCCTTGACCTACCCTTAACTTGGTGCCCCTGCAGTGTGCAGCATAGTAGT---AGGAAACCCAACGAGAGCAT
GAGGCTTGTCGTTGTGACCATCATCGGGGTGGTCTTTGGTTTCTTCATCGGGATCTCCTTCCCAACAGTCAGCATAACAA
AGGTATACATTCACATGCCTCTATTATCAACGTAGTGCTGCAGTAACTGCATGGATGCAAACCGCATCTCAAGAAAGTTG
ACTCTTTCGAACATGCTTTGCAGCTTCACTTCCCTTCTAGCATTGTTTCCTACATAGAGGACAAGAACTCTGGACTCACA
GCTCAGGCTATACTTAACCATGCCTGGATTTCTGCTAGAAACGCAAGGGGCAATGCTTCTGAATCTAGTTCAAACACTAC
CATGAAGGTAAGTTGCCTTTGTTCTTC--TACTCCAACTCTGTTTCTACATCTTTTATTAAAAGTATATGTACAATTCAC
ATCCTAACTTTTTGATCTAACCTTGATTTTTCTTGACAATCATAGATATATGTACCAACAAACCCCAGGGGCGCAGAGAT
GCTAGCACCTGGCATCATTGCATCAGAGTCTGATTTCAATGCTCACAGACTATGGGGAGACCCGGCTGAGGTAGCTATTC
TTTTCTGTATATCCACC----------TTTCAGCTCATGGGGTGCCTTTTCTTCTTTCTTTTCCACCTTATATGCTGTAT
TCCGCCTCAAAGAGAATAATGTGTTTCTTTCTTTCTCCACTAGATGTACTATAATATTCCACCTCAAAAAGCTGACTATG
ATGTTTTCTGCCTATCACATTGTTCTGAAATAATCAGCATAT-GCTTGCTCTTGTCATCTGATA---AATTGTTATGTGT
GTCTATTGTTGTCACATAATTTCGAAGTGATTGTTCTTGCACAATTGACGCACACTGTTGTGCACTGGCGTTTTTTTGTG
CTCCTGTGAATTCCATATATTATGTTCTGACATGTGGTATGTCCTGCATTTC-TTTGCTGATTTTAGACCCGGAATTTGC
ATTTTTAGCTTTCATGTTTCATAAAGTTTATAAATGTAAATCTTAATCTCTGCACTCCGGCATTTATGGTGCATCGAAGT
TAACCTCAGTGTTCGAGTTAACCCTCACAAAATTTGCTTGACTTTGAATTCGCAGGACCTACCCTTCAAGCCAAAGTACC
TTGTTACTTTCACTGTTGGAATTGCACAGAAGGATAACATAAATAGAGCAGTCCAGAAGGTATTTTTTT---TACATTTA
TAATATATCAATTATCTGAGTGTCCCAGGTTTTTC-TTTTACTTTCACTGTTTCTTTTC---------------------
--------------------------------------------------------------------------TAGTAC
AGGGCATTGTTTTGTCATGTTATCGTTACTTATTATATATTAATTTAAAAATACCATGATATTGTAACTTGGTTATCTGC
CTAATTGTTTGAGCTCTTGGTTCTTGCAGTTTTCTGATGACTTTGCTATCCTGTTATTTCACTATGATGGCCATGTGACT
GAATGGGAGGAATTTGAGTGGTCAAAACGAGCGATTCATGTTAGTGTTCTGAAACAAGCGAAATGGTACGCCCTGATGCT
TTTGTATTTTCTTAAATTTGTAATCTCAACAGCGAATCTAGAAGTTGACTAATATCTTGACCTCTAGGTGGTATGCTAAA
AGATTCTTGCATCCTGATATCGTGGCACCTTATGAGTACATATTTATCTGGGATGAAGACCTTGGAGTTGATCATTTCAA
TGGAGAGGAGTAAGCTTTCAGTCTTCACTTAGCATAACTCATTGTTCTGTTGGAGAGTTAGGTGACTTGCTAACATGATT
TACATTGTAGGTATATCAAACTTGTCAAGAAATATCAGCTGGAAATCTCACAACCTGGTTTGGAGCCAGATAAGGGATTG
ACATGGCAGATGACCAAAAGAAGAGGGGATCGCGAGGTTCACAAGTAAGTTGAAGAACTCTTGTCTGCCCTTCTGAGATG
CACAAATTTGTTTTTTTCTTACCTTTCATCTCATACC-TGCCCCGTTGGTGGTTTGGTTTTAACAGGGATACTGAGGAGA
GGCCAGGCTGGTGCACGGATCCTCATCTTCCACCATGTGCTGCGTATGTATTTCGCCTTCCGCAGCTGACTTGTGTTAC-
TTGGTCGCTGATATACATGG-AAAAGGGCCTAACTGGGTATGTTTGATGTGCAGTTTTGTTGAAATTATGGCTCCGGTTT
TCTCCAGAGATGCATGGAGATGTGTATGGCATATGATTCAGGTATAGCATATTTCCACCATCTAATTTCCTCTTACATTT
GCACCTCATGTGGTTAACATCCCCT---T-------GTTGCAGAATGACTTGGTTCATGGATGGGGTCTGGATTTTGCTC
TGAGGAAATGTGTGGAGGTATGAACCACACGCCCTTGTCGAAACATTGATATATTTCTGACTACTTCCATTGTTAACACT
A-TAATCATTTAAATAGCTCTCGACCATCTTATCTCT--GTCTCCAATTAACGTATTTACTCTTTACAGCCTGCTCACGA
GAAAATCGGTGTCGTCGACTCCCAGTGGATCGTACACCAAGTGGTTCCTTCTCTTGGGAACCAGGTAAGAAGAGTCATAA
AAGCATATCTTTTGAGCACCAGGCCCCATCATAGAACAGCAAAACCTGGCACTTACTACCAAACTCATTCCTGCTTTCAA
AAACTCGCAGGGACAGGCGGAGAACGGGAAGGCGCCGTGGGAAGGGGTGCGGGAGCGCTGCCGAAAAGAGTGGGGGATCT
TCCAGACGAGGATCGCGGAGGCCGACAAGGCGTATTACGAGATGATGGGCGTCACCCCTCCCAACGTAACATTTGTCCAC
TAG-----------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G530200
GCAAAAAACCGGCAGGTCTGGCCCACCCGGCAGCCACCCACCAGGGCGAGCGAATCCCACGCACCAGAAGATTTGGCCGG
CCAGCCAGCCTCCCACCCCCTCCTCCCCTCTCCTTCTTCAATCCCAATCTCTGACCGCCCTCGCCGTCGCCATCCCCTCT
CCGCCC---CCTCCACGCGCGCGCGCCGCGGCACCGCCCCCCGCCCCCGCCGCACGCGCGCGCGGCCGCGCCCGACCCCC
GCCCGCA----------GCCGGATTCCGCCGCCGCCGGACGCCGCCGGACGCGC------------------------GC
GGCGCCGCAACAGGTACGCCGATCCTCGCACGGGGCTGCTTCGATTCACTCGATCAGCTTCCCCTTTCCGATTTCATTAT
TATCGCCAGAGCCCTAGTGCTGGATAGATAGATTGGTTCTTCATGCCATC----CCATCCAAAGGCCGGGGC--TTTCCC
CTACGTTTTGTTCCGTTTGTCGGTTGACTAGGCAGGAGCAGAACGAATTGATTCGCGTGACTAATCCTAGCAGCAGCAGC
ACTACTCCTAGGTTGAAAGTTCAGTTCGGAGTTGGAACGTC-TTTAATCAATCCGGCACTTCATTTTCCCACATGG----
--GCACGGCCATGGCCATGTGAAATCTCCAAGCTTTACCAGCACGCTCATGTTGTTCACACAGTGATCCTGGCTGC----
CCAACCAGCAGGTGCTGCATCAAAATTAGGAAACGAACCAGTAACCGGCTAGCCGCCGCATCAAAATTAGGCAGGCGTGT
GTAATCGG-----------CAGCGACTACTACCGCATCG----G----AGTTAGGGAAGCGTGTACCATTGGCAGCGAGT
AATGACTGG-----------TAGTAAATAC---------------TCT---------------AGCGTGGATATGTTGTT
TCATAACTACAGCCGCCTGATTCTCATGCTAACACCGAC----TGTCTTTCAGGTCTGCCTTCCGGGTTGGCGCCATCAT
TATGTTCTTGCCGAGCAATGTGTAGCAGTTGCCGCTCGCAAGACTCGATCCCCCGTTCCCGCGCTGGTGTGCTAGGTGAT
GGCAAAACTCCCGATAGTTGGTCGCAGGTTCACATGCTTTTTTCCTTTCCCCTCACGGTTATCTGTTTTTAATTATGCTG
CCCTG-TTCCTTGACCTACCCTTAACTTGGTGCCCCTGCAGTGTGCAGCATAGTAGT---AGGAAACCCAACGAGAGCAT
GAGGCTTGTCGTTGTGACCATCATCGGGGTGGTCTTTGGTTTCTTCATCGGGATCTCCTTCCCAACAGTCAGCATAACAA
AGGTATACATTCACATGCCTCTATTATCAACGTAGTGCTGCAGTAACTGCATGGATGCAAACCGCATCTCAAGAAAGTTG
ACTCTTTCGAACATGCTTTGCAGCTTCACTTCCCTTCTAGCATTGTTTCCTACATAGAGGACAAGAACTCTGGACTCACA
GCTCAGGCTATACTTAACCATGCCTGGATTTCTGCTAGAAACGCAAGGGGCAATGCTTCTGAATCTAGTTCAAACACTAC
CATGAAGGTAAGTTGCCTTTGTTCTTC--TACTCCAACTCTGTTTCTACATCTTTTATTAAAAGTATATGTACAATTCAC
ATCCTAACTTTTTGATCTAACCTTGATTTTTCTTGACAATCATAGATATATGTACCAACAAACCCCAGGGGCGCAGAGAT
GCTAGCACCTGGCATCATTGCATCAGAGTCTGATTTCAATGCTCACAGACTATGGGGAGACCCGGCTGAGGTAGCTATTC
TTTTCTGTATATCCACC----------TTTCAGCTCATGGGGTGCCTTTTCTTCTTTCTTTTCCACCTTATATGCTGTAT
TCCGCCTCAAAGAGAATAATGTGTTTCTTTCTTTCTCCACTAGATGTACTATAATATTCCACCTCAAAAAGCTGACTATG
ATGTTTTCTGCCTATCACATTGTTCTGAAATAATCAGCATAT-GCTTGCTCTTGTCATCTGATA---AATTGTTATGTGT
GTCTATTGTTGTCACATAATTTCGAAGTGATTGTTCTTGCACAATTGACGCACACTGTTGTGCACTGGCGTTTTTTTGTG
CTCCTGTGAATTCCATATATTATGTTCTGACATGTGGTATGTCCTGCATTTC-TTTGCTGATTTTAGACCCGGAATTTGC
ATTTTTAGCTTTCATGTTTCATAAAGTTTATAAATGTAAATCTTAATCTCTGCACTCCGGCATTTATGGTGCATCGAAGT
TAACCTCAGTGTTCGAGTTAACCCTCACAAAATTTGCTTGACTTTGAATTCGCAGGACCTACCCTTCAAGCCAAAGTACC
TTGTTACTTTCACTGTTGGAATTGCACAGAAGGATAACATAAATAGAGCAGTCCAGAAGGTATTTTTTT---TACATTTA
TAATATATCAATTATCTGAGTGTCCCAGGTTTTTC-TTTTACTTTCACTGTTTCTTTTC---------------------
--------------------------------------------------------------------------TAGTAC
AGGGCATTGTTTTGTCATGTTATCGTTACTTATTATATATTAATTTAAAAATACCATGATATTGTAACTTGGTTATCTGC
CTAATTGTTTGAGCTCTTGGTTCTTGCAGTTTTCTGATGACTTTGCTATCCTGTTATTTCACTATGATGGCCATGTGACT
GAATGGGAGGAATTTGAGTGGTCAAAACGAGCGATTCATGTTAGTGTTCTGAAACAAGCGAAATGGTACGCCCTGATGCT
TTTGTATTTTCTTAAATTTGTAATCTCAACAGCGAATCTAGAAGTTGACTAATATCTTGACCTCTAGGTGGTATGCTAAA
AGATTCTTGCATCCTGATATCGTGGCACCTTATGAGTACATATTTATCTGGGATGAAGACCTTGGAGTTGATCATTTCAA
TGGAGAGGAGTAAGCTTTCAGTCTTCACTTAGCATAACTCATTGTTCTGTTGGAGAGTTAGGTGACTTGCTAACATGATT
TACATTGTAGGTATATCAAACTTGTCAAGAAATATCAGCTGGAAATCTCACAACCTGGTTTGGAGCCAGATAAGGGATTG
ACATGGCAGATGACCAAAAGAAGAGGGGATCGCGAGGTTCACAAGTAAGTTGAAGAACTCTTGTCTGCCCTTCTGAGATG
CACAAATTTGTTTTTTTCTTACCTTTCATCTCATACC-TGCCCCGTTGGTGGTTTGGTTTTAACAGGGATACTGAGGAGA
GGCCAGGCTGGTGCACGGATCCTCATCTTCCACCATGTGCTGCGTATGTATTTCGCCTTCCGCAGCTGACTTGTGTTAC-
TTGGTCGCTGATATACATGG-AAAAGGGCCTAACTGGGTATGTTTGATGTGCAGTTTTGTTGAAATTATGGCTCCGGTTT
TCTCCAGAGATGCATGGAGATGTGTATGGCATATGATTCAGGTATAGCATATTTCCACCATCTAATTTCCTCTTACATTT
GCACCTCATGTGGTTAACATCCCCT---T-------GTTGCAGAATGACTTGGTTCATGGATGGGGTCTGGATTTTGCTC
TGAGGAAATGTGTGGAGGTATGAACCACACGCCCTTGTCGAAACATTGATATATTTCTGACTACTTCCATTGTTAACACT
A-TAATCATTTAAATAGCTCTCGACCATCTTATCTCT--GTCTCCAATTAACGTATTTACTCTTTACAGCCTGCTCACGA
GAAAATCGGTGTCGTCGACTCCCAGTGGATCGTACACCAAGTGGTTCCTTCTCTTGGGAACCAGGTAAGAAGAGTCATAA
AAGCATATCTTTTGAGCACCAGGCCCCATCATAGAACAGCAAAACCTGGCACTTACTACCAAACTCATTCCTGCTTTCAA
AAACTCGCAGGGACAGGCGGAGAACGGGAAGGCGCCGTGGGAAGGGGTGCGGGAGCGCTGCCGAAAAGAGTGGGGGATCT
TCCAGACGAGGATCGCGGAGGCCGACAAGGCGTATTACGAGATGATGGGCGTCACCCCTCCCAACGTAACATTTGTCCAC
TAGGCTGTCGTCGTATACCTCGCCGCTGTTAATCCTCCCTC-CCCCCTTTTTTGTCATCTCTAGAGCCCTTATTGTAGTG
AGCTTAGGTGAATGGTGATGATATTGATGATACGTGTAGAGCATACACAGATATCATACCATATCAGGTTAATTTTGTTA
CCTCCCTTTTCTGCTCTGTGTGCTT-CTCCCTTTCTGCTGTGTATATTCTTCTCCCATTTTACTCCAGTTCTTTTACTTT
ACTATTCGTTTCCTTGAATTGAAGTTTGAACTGAAATTATTTGACGTCGCAAGCAAATGAAAATCAGTTTGGGAAAATCT
CAATGGAACACTGATTGGTGTTCATGTTAATCCTCTCAGTATGTACACCAAAGAAGCACATTAATTTGATG------AAA
AAGTAAAT--------------TAACTGCAAAGTATGCAAATGCTGTATTGGTAG-----ATGGATAGCCAAGGT--TAT
ATAGTACATCTGGACCATAAAGCACAGGCTTAGAACTGCTCAAGAAACCCTAGACAGCAACACAATTAGAGCTTATAGTT
AACTAAAGAATGGTTGATGTGATGATCTCCCTGAGGAACTCGATCCTCTGCAGCCTCTCCTCCAGCTCCAGCTGGCTAAC
AGGCCTGAAAA-CAAAAGGCACCACCATTGCTCAGCTTAGCCATTGTAAATCTCTGAAACAAACAGGCGACCATCATCTT
CCTCACCTCTGGACACCTGCTGCCGGATGACCGCTGCTCGGGCGGTGGCGCTGGCTTGCTCCGTCGCGCGATCCCGGCTC
GGTTTCGGTTTGGTCTCCGCTGCC---GCAGATGAACTGGGAGAGCAGGGGGTCAGGCTCAGGGTCCTGGCATGGCCTGC
TGCTCATCATGTAGGGGTTCACTTCATATGCAGGTGGCGATGCCGCTGCTGGCCATGGTGAGCTGCTGGGCCTCGAAGGC
TTCCTCCTCTGCAATGATCAGATGATGGTGATGATGATGAGTTTTTCGTGCCGGGATGGGACCGATTCCCACGTAG
>chr3B_1
GCAAAAAACCGGCAGGTCTGGCCCACCGGGCAGCCACCCACCGGGGCCAGCGAATCGCACGCAGCAGAAGATTTGGGCGG
CCAGCTTCCCCTCCCACCCCCCCTCCTTTCTCCTTCTTCAATCCCAACCTCTGACCGCCCTCGCCGTCGCCATCCCCTTT
CCCCCCCCACCTCCACGCGCGCGCGCCGCGGCACCGCCCCCCGCCTCCGCCGCACGCGCGCGCGCGCGCGCCTCGGACCG
GCCCGGCCAGCAGCCGCGCCGGATTCCGCCGCCGCCGGACGCCGCCGGACGCGCCGGAGCCGGATCGGCCCTCCGCGCGC
GGCGCTGCAGCAGGTACGCCGATCCTCGCGCGGGGATGCTTCGATTCACTCGATCAGCTTCCCCTCTCCGATT-CATTAT
CATCGCTAGAGCCCTGGTGCTAGATAGATAGATTGGTTCTTCATACCATA----CCATCCAAAGGCCGGGTTTTTTTCCC
CTACGTTTTGTTCCGTCTGTCGGTTGACTAGGCAGGAGCAGGACGAATTGATTCGCGTGACTAGTCCTAGCAGC---AGC
ACTACTCCCAGGTTAAAAGTTCAGTTCGGAGCCGGAACATCTTTTAATGAATCCGGCAGTCCAATTTCCCACATGG----
--GCA------TGGCCATATGAAATTTCCAAGCTTTACCAGCACGCTAATGT-------------ATCCTGGCTGCCCAA
CCAACCAGCAAGTGCTGCATCAAAATCAGGAAACCAACCAGTAACCGGCTAACCGCCGCATCAAAATCAGGGAAGCGTCA
GTCGTGTAGTATAATTGTTCAGCGACCGGTAACTAACTGCTGCATCAAAGTTAGGGAACCGTGTATAGTTGGCAGCGAGT
AATGACTAGTAAATACTACGTGCGTGCTAAAAAAGGAGGTTCAAATCT---------------AGCGCCGATATGTTGTT
TCATAACCGCAGACACCTGATAACATCCACTGTATATA-----TGTATTTCAGGTCTGCCTTCCGGGTTGGCGTCATCAT
TATGTGCTTGCCGAGCAATGTGTAGCAGTTGCCGCTCGCAAGACTCGATCGCCCGTTCCCGCGCCGGTGTGCTAGGCGAT
GGCAAAACTCCCGATAGTTGGCCGCAGGTTCACATGCCTTCCTTTCT----CTCTTGGTTATCTGTTTTTAATTATGCCA
ACTTG-TTCCTTG----ACCCTTAACTTGGTGCCCCTGCAGTGTGCA------TAGT---AAGAAACCCAACGAGAGCAT
GAGGCTTGTCGTCGTGACCATCATCGGGGTGGTCTTTGGTTTCTTCATCGGGATCTCCTTCCCAACAGTCAGCATAACAA
AGGTATACATTCACGTGCCTCTATTATCAACGTAGTGCTGCAGTAAGTGCATGGATGCAAACCGCATCTCAAGAAAGTTG
ACTCTTTCGAACATGCTTTGCAGCTTCACTTCCCTTCTAGCATTGTTTCCTACATAGAGGACAAGAACTCTGGACTCTCA
GCTCAGGCTATACTGAACCATGCCTGGATTTCTGCTAGAAACGCAAGGGGAAATACTTCTGAATCTAGTTCAAACACTAC
CATGAAGGTAACCTGCCTTTGTTCTTC--TACTCCAGCTCTGTTTCTACATCTTTTATTAAAAGTATACGTACAATTCAC
ATCCTAACTATTTGATCTAACCTTGATCTTTCTTGACAATCATAGATATATGTACCAACAAACCCCAGGGGCGCGGAGAT
GCTAGCACCTGGCATCATTGCATCAGAGTCTGATTTCAATGCTCACAGACTATGGGGAGACCCGGCTGAGGTAGCTATTC
TTTTCTCCATCCACCTGGATGGATGTATTTCAGCTCAAGGGATGCCTTTCCTTCTTTCTTTTCCACCTTATATGCTGTAT
TCCGCCTCAAAGAGAATATTGTGTTCCTTTCTTTCTCCACTACATGTACTATAATATTCCACCTCAAAAAGCTGACTATG
CTGTATTCTGCTTATCACATTGCTCTCAAATAATCAGCATAT-GTTTGCTCCTGTCATCTGATATTACATTGTTATGCTT
GTCTATTGTTGTCACATAATTTCGAAGTGATTGTTCTTGCG-----------CACTGTTGTGCACTGACGTTT-TTTGTG
CTCCTGTGAATTCC--ATATAATGTTCTGACCTGTGGTATGTCCTGCATTTC-TTTGCTGATTTTAAGCC---AATTTGC
ATTTTTAGCTTTCATGTTTCATAAAGTTTATAAATGTAAATCTGAATCTCTGCACACCGGCATTTATGGTGCATCAAAGT
TATCCTCAGTGTTTGAGTTAACCCTCACAAAATTTGCTTGACTTTGAATTTGCAGGACCTACCCTTCAAGCCAAAGTACC
TTGTTACTTTTACTGTTGGAATTGCACAGAAGGACAACATAAATAGAGCAGTCCAGAAGGTAATTTTTTG---ACATTTA
TAATATATCAATTATCTGAGTGTACCAGGTTACCCTTTTTACTTTCACTGTTTCTTGTC---------------------
--------------------------------------------------------------------------TGGTAC
AGGGCACTGTTTTGTCGTGTTATCTTTACTTTTTACCCATTAATTTACAAATACAGTGATATTGTAACTTGGTTATCTGC
CTAATTGTTTGAGCTCTTGGTTCTTGCAGTTTTCTGATGACTTTGCTATCCTGTTATTTCACTATGATGGCCATGTGACT
GAATGGGAGGAATTTGAGTGGTCAAAACGAGCGATTCATGTTAGTGTTCTGAAACAAGCGAAATGGTACGCCCTGATGCT
TTTGTATTTTCTTAAATTTGTAATCTGAACGGCGAATCTAGAAGTTGACTAATTTCTTCACCTCTAGGTGGTATGCTAAA
AGATTCTTGCATCCTGATATCGTGGCACCTTATGAGTACATATTTATCTGGGATGAAGACCTTGGAGTCGATCATTTCAA
TGGAGAGGAGTATGCTTTCAGTCTTCACTTAGCATAACTCGTTGTTCTGTTGGAGAGTTAGGTGACTTGCTAACATGATT
TACATTGTAGGTATATCAAACTTGTCAAGAAATATCAGCTGGAAATCTCACAACCTGGTTTGGAGCCAGATAAGGGATTA
ACATGGCAGATGACCAAAAGAAGAGGGGATCGTGAGGTCCACAAGTAAGTGGAATAACTATCGTCTGCCCGTCTGAGATA
CACAATTTTTTTTC---CTTACCTTTCATCTCATACC-TACCTGGTTGGTGGTTTCGTTTTAACAGGGATACTGAGGAGA
GGCCAGGCTGGTGCACGGATCCTCATCTTCCACCATGCGCTGCGTATGTATTTTGCCCTCCGCAGCTGACTTGTGTTACT
TTGGTTGCTGATATACGTGG-AAAAGGGCCTAACTGTATATGTTTGATGTGCAGTTTTGTTGAAATTATGGCTCCGGTCT
TCTCCAGAGATGCATGGAGATGTGTATGGCATATGATTCAGGTATAGCATATTTCCACCATCTAATTTCTTATTACATTT
GCACCTCATGTGGTTAACATCCCCTTTTT-------GTTGCAGAATGACTTGGTTCATGGATGGGGTCTGGATTTTGCTC
TGAGGAAATGTGTGGAGGTATGAACCACATGCCCTTGTCAAAACATTGATATATTTCTGACTACGTCCACTCCTAACACT
A-TAATCATTTAAATAGCTCTCGAACATCTTATCTCTATATCTACGATTAACGTATTTACTCTTAGCAGCCTGCTCATGA
GAAAATCGGTGTCGTCGACTCCCAGTGGATCGTACACCAAGTGGTTCCTTCTCTTGGGAACCAGGTAAGAAGAACCATAA
AAGCATATCTTTTGAGCACCAGGCCC-ATCATAGAACAGCAAAACCTAGCACTTACTACCAAACTCATTCCTGCTATCGA
AAACTCGCAGGGACAGGCGGAGAACGGGAAGGCGCCATGGGAAGGGGTGCGGGAGCGCTGCCGAAAAGAGTGGGGGATCT
TCCAGACGAGGATCGCGGAGGCCGACAAGGCGTATTACGAGATGATGGGCGTTACCCCTCCCAACGTAACATTTGTCCAC
TAGGCCGTCGT---ATACGTCGCCGCTGTTAATCCTCCCTC-CCCCCTTTTTTGTCATCTCTAGAGCCCTTATTGTAGTG
AGCTTAGGTGAATGGTGATGATATTGATGATACGTGTAGAGCATACACAGATATCATACCATACCAGGTTAATTTTGTTA
CCTCCCTTTTCTGCTCTGTGTGCTTCCTCCCTTTTTGCTGTGCATATGCTTCGCCCATTTTACTCCGGTCCGGTTATTTT
ACTATTCGTTTCCTCGAGTTGTATTTTGAACTGAAATTACTTGACGTCGCAAGCAAATGAAAATCGGTTCAGGAAAATCT
CAATGGAACACTGATTGATGTTCATGTTAAT-----------------------------TTAATTTGATG------AAA
AAGTAAATTAACAACAAGAAAATAACTGCAAAGTATGCAAATGTTGTTGTATTGATAGTTATAGATAGCCAAGGTTATAT
ATAGTACATCTGGACCATAAAACACAGGCTTAAAACTGCTCAAGAAACCCTAGACATCAACACAATTAGAGCTTATAATT
AACTAAAGAATGGTTGATGTGATGATCCCGCTGAGGAACTCTATCCTCTGCAGCCTCTCCTCCAGCTCCAGCCGGCTCAC
AGGCCTGAAAATCAAAAGGCACCACCATTGCTCAGCTTAGCCATTGTAAATCTCTGAAA-AAACAGGCGACCATCATCTT
CCTCACCTCTGGACACCCGCCGTCGGATGAGCGCTGCTCGGGCGGTGGCGGTGGCTTCCTCCGTCGCGCGATCCTGGCTC
GGTTTCGGTTTGGTTGTCGCTGCCGCGGCAGATGAACTGGGAGAGCAGTGGGTCAGGCTCAGGGTCCTGGCATGGCCTGC
TGCTCATCATGTAGGGGTTCACATCATATGCAGGTGGTGCTGCCGCTGCTGGCCATGGTGAGCTGCTGGGCCTCGAAGGC
TTCCTCCTCTGCCATGATCAGATGATGA--ATGATGATGAGTTTTTCGTGCCGGGATGGCGCCGATTCTCACGTAG
>chr3A_20
-------------------GGCCCACCCGGCAGCGA-CCACCGGGGCCAGCGAATCGCGCGCACCAGAAGATTTGGCCGG
CCGGCCT-CCCACCCGTCCTCCCCTCTCCCCCCTTCTTCAATCCCAATCTCTGCCCGCCCTCGCCGTCGCCATCCCCTCT
CCGCCCCCTC--CCACGCGCGCGCGCCGCGGCACCGCCCCCCGCCTCCGCCGCACGCGCGCGCGCGCGCCCCCGACCCCC
GCCCGCA----------GCCGGACG-------CGCCGGACGCCGCCGGACGCGCCGGAGCCGGATCGGCCCTCCGCGCGC
GGCGCTGCAACAGGTATGCCGATCCTCGCACGGGGCTGCTTCGATTTACTCGATCAGCTTCCCCTTTCCGATT-CATTAT
CATCGCTAGAGCCCCAGTGCTAGATAGATAGATTGGTTCTTCATACCATATATACCATCCAAAGGCCGGGTTTT---CCC
CTACGTTTTCTCCCG------------CTAGGCAGGAGCAGGACGAATTGATTCGCGTGGCTAATCCTAGCAGC---ACC
ACTACTCCTAGGTTGAAAGTTCAGTTCGGAGTTGGAACATC-TTTAATGAATCCTGCACTTCAATTTCCCACATGGACAT
GGGCA------TGGCCATGCCAAATTTCCAATCTTTACTACGTACCACGCT-----------------------------
--AACCAGCAAGTGCTGCATCAGAATTAGGAAACCAACCAGTAACCGGCTAACAGCTGCATCAAAATCAGGCAAGTGTGT
ATAATTGG-----------CAGCGACTGGTAGCTACGGCATCTG----AGGTAGGGAAGCGTGTGTAATTGGCAGCGAGT
AATGACTAGTACAGTAGTACTAGTAAATAC---------------TAAAGCATATGAAACTCCAGCGTGGATATGTCGTT
TCATAACTACAGCCGCCTGATTCTGATGCAAACATGGGCTGTGTGTATTTCAGGTCTGCTTTCCGGGTTGGCACCATCAT
TATGTTCTTGTCGAGCAATGTGTAGCAGTTGCCGCTCGCAAGACTCGATCGCCCGTTCCCGCACTGGTGTACTAGGCGAT
GGCAAAACTCCCGATAGTTGGTCGCAGGTTCACATGCCTTTTCC--TTCTCCTCTTGGTCATCTGCTTTTAATTATGCTG
CCCTGTTTCCTTA----ACCCTAAACTTGGTGCCCCTGCAGTGTGCA------TAGTAGCAGGAAACCCAACGAGAGCAT
GAGGCTTGTCGTCGTGACCATCATCGGGGTGGTCTTTGGTTTCTTCATCGGGATCTCCTTCCCAACAGTCAGCATAACAA
AGGTATACATTCACATGCCTCTATTATCAACGTAGTGCTGCAGCAAGTGCATGGATGCAGACCGCATCTCAAGAATGTTG
ACTCTTTCGAACATGCTTTGCAGCTTCACTTCCCTTCTAGCATTGTTTCCTACATAGAGGACAAGAACTCTGGACTCACA
GCTCAGGCTATACTGAACCATGCCTGGATTTCTGCTAGAAACGCAAGGGGAAATACTTCTGAATCTAGTTCAAACACTAC
CATGAAGGTAACTTGCCGTTATTCTTCTATACTCCAACTCTGTTTCTACATCTTTTATTAAAAGTATATGTACAATTCAT
ATCCTAACTTTTTGATCTTTCTTGATAATTG-----------TAGATATATGTACCAACAAACCCCAGGGGTGCAGAGAT
GCTGGCACCTGGCATCATTGCATCAGAGTCTGATTTCAATGCTCACAGACTATGGGGAGACCCGGCTGAGGTAGCTATTC
TTTTCTCCATCCACCTGGATGGATGTATTTCACCTCAAGGGATGCCTTTCCTTCTTTCTTTTCCACCTTATATGCTGTAT
TCCGCCTCAAAGAGAATATTGTGTTCCTTTCTTTCTCCACTAGATGTGCTATAATATTCCACCTCAAAAAGCTGACTATG
ATGTATTCTGCCTATGACATTGTTCTCAAATAATCAGCAAAAGGCTTGCTCTTGTCATCTGATA---CATTGTTATGCCT
GTCTATTGTTGTCACATAATTTCGAAGTGATTGTTCTTGCACAATTGACGCACACTGTTGTGCACTGGCATTTCTGTGGG
CTCCTTTGAATTACATATATAATGTTCTGACCTGTGGTATGTCCTGCATTTTTTTTGCTGATTTTATGCCCAGAATTTGC
A-TTTTGGCGTTCATGTTTCATAAAGTTTATAAATGTAAATCTTAATCTCTGCACTCTGGCATTTATGGTGCATCAAAGT
TAACCTCAGTGTTCGAGTTAACCCTCACAAAATTTGCTTGACTTTGAATTTGCAGGACCTACCCTTCAAGCCAAAGTACC
TTGTTACTTTCACTGTTGGAATTGCACAGAAGGACAACATAAATAGAGCAGTCCAGAAGGTAATTCTTTTTATACATTTA
TAATATGTCAATTATCTGAGTGTCCCAGGTTACCTTTTTTACTTCCACTGTTTTCTGGGCATTGTTTTGTCGTGTTGCAC
TGTTTCCTTTCGCAATACCTTTCTTGGCATTTTTTACTTTCACTTTACTTCCACTGTTTCCTTTCTTAGTACCTTGTTAC
AGGGCATTGTTTTGTTGTG-TATCTTTACTTTTTATCCATTAATTTACAAATACAATGATATTGTAACTTGGTTATCTGC
CTAATTGTTTGAGCTCTTGGTTCTTGCAGTTTTCTGATGACTTTGCTATCCTGTTATTTCACTATGATGGCCATGTGACT
GAATGGGAGGAATTTGAGTGGTCAAAACGAGCAATTCATGTTAGTGTTCTGAAACAAGCGAAATGGTATGCCCTGATGCT
CTTGTATTTTCTTAAATTTGTAATCTGAACAGCGAATCTTGAAGTTGACTAATTTCTTGACCTCTAGGTGGTATGCTAAA
AGATTCTTGCATCCTGATATCGTGGCACCTTATGAGTACATATTTATCTGGGATGAGGACCTTGGAGTCGATCATTTCAA
TGGAGAGGAGTATGCTTTCAGTCCTCACTTAGCATAACACATTGTTCTGTTGGAGCGTTAGGTGACTTGCTAACATGATT
TACATTGCAGGTATATCAAACTTGTCAAGAAATATCAACTGGAAATCTCACAACCTGGTTTGGAGCCGGATAAGGGATTG
ACATGGCAGATGACCAAAAGAAGAGGGGATCGTGAGGTTCACAAGTAAGTTGATGAACTCTCGTCTGCCCTTCTGAGATA
CACAAATTTGTTTCTTTTTATTATCTCATCTCATACCATACCTCGTTGGTGGTTTGGTTTTAACAGGGATACTGAGGAGA
GACCTGGCTGGTGCACGGATCCTCATCTTCCACCATGTGCTGCGTATGTATTTCTGCCTTCGCAGCTGACTTGTGTTACT
TTGGTTGATGATATATGTGGAAAAAGGGCCTAACTGTGTATGTTTGATGTGCAGTTTTGTTGAAATTATGGCTCCAGTCT
TCTCCAGAGATGCATGGAGATGTGTATGGCATATGATTCAGGTATAACATCGTCTGT-CATCTTCTTTCCTCTGTCTGTT
CACTTCAATACCTCGTGTGCCTGATATCTGCTCGTCGTTGCAGAATGACTTGGTTCATGGATGGGGTCTTGATTTTGCTC
TGAGGAAATGTGTGGAGGTATGAACCACACACCCTTGTC-AAACATTGATATATTTCTGACTACTTCCATCGATAACACT
ATTAGTCATTTAAATAGCTCTCGACCATCTTATCTCTATGTCTACGACTAACGTATTTACTCTTTGCAGCCTGCTCATGA
GAAAATCGGTGTCGTCGACTCCCAGTGGATCGTGCACCAAGTGGTTCCTTCTCTTGGGAACCAGGTAAGAAGAATCATAA
AAGCATATCTTTTGAGCACAAGGCCCCATCATAGAACATCAAAACCTAGCACTTACTACCAAACTCATTCCTGCTTTCGA
AAACTCACAGGGACAGGTGGAGAACGGGAAGGCGCCATGGGAAGGGGTGCGGGAGCGCTGCCGGAAAGAGTGGGGGATCT
TCCAGACGAGGATCGCGGAGGCCGACAAGGCGTATTACGAGATGATGGGCGTCACCCCCCCCAACGTAACATTTGTCCAC
TAGGCCGTCAT---ATACATCACAGCTGTTAATCCTCCCTGTCCCCCTTTTTTGTCATCTCTAGAGCCCTTATTGTAGTG
AGCTTAGGTGAATGGTGATGTTATTGATGATACGTGTAGAGCATACACAGATATCATACCATATCAGATTAATTTTGTTA
CC-------------------------TCCCTTTTTGCTCTGTATATGCTTCTCCCATTTTACT----------------
-CTATTCGTTTCCTCGAATTGTATTTTGAACTGAAATTATTTGACGTCGCAAGCAAATGAAAATCAGCTCGGGAAAATCT
CAATGGAACACTGATTGATGTTCATGTTAATCCTCTCAGTACATACACCAAAGAAGCACATTAACTTTTTTTATGAAAAA
GAGTAAATTAT-AACAAAGAAATAACTGCAAAGTATGCAAATGTTGTATTGATAG-----ATGGATAGCCAAGGC--TAT
ATAGTACATCTGGACCATAAAACACAGGCTTAGAACAT-------------------------AATTAGAGCTTATAGTA
AACTAAAGAATGGTCGATGTGATAATCTCCCTAAGGAACTCAATCCTCTGCAGCCTCTCCTCCAGCTCCAGCTGGCTCAC
AGGCCTGAAAA-CAAAAGGCACCACCATTGCTGAGCTTAGCCACAGCAAATCTCTGAAA-AAACAGGCAACCGTCATCTT
CCTCACCTCTGGGCAT---CCGCCGGATGAGCGCTGCTCGGGCCGTGGCGTAG------------------TCCCGGCTC
GGTTTCGGTTTGGTCTCCGCTGCC---GCAGATGAACTGGGAGAGCAGCGGGTCAGGCTCAGGGTCCTGGCATGGCCTGC
TACTCATCATGTAGGGGTTCACATCATATGCAGGTGGTGATGCCGCTGCTGGCCATGGTGAGCTGCTGGGCCTCGAAGGC
TTCCTCCTCTGCCATGATCTCAGATGA-------------------------------------------------
>SNPs
------------------------------------------S----S--------S-----------------------
------SS--SS--SS----S-----S-----------------------------------------------------
---------------------------------------------S------------------SS--------------
--------------------------------------------------------------------------------
-----S-------------------------------------------------------------------S------
S-----S--------------S----------------------S----S--------------------SS--------
----------------S------------------------S--------------------------------SSS---
--------------------------------------S---------S--------------S----------------
-----SSSSSS--------------S--------------------------SSSSSSSSSSSSS---------------
----------S-----------------------S----------------S---------------S-----S------
-----S---------------------SS--S-SS-SS---------------------------SS-------------
-------S------------------------------------------------------------------------
------------------------S----S----SS----------S---------------------------------
--------------------------------------------------S-------------------------S---
-------------------------------------S------SS---S----SS------------------------
-------------SSSS------------------------------SSSSSS---------------------------
------------S-------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------S---S-------------------------
-----------S--------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
------SS--SSS-SSS--------------------S---S-------S------------------------------
------------------S------S------------------------------------------------------
----S---------------------S----------------------------------------S---------SS-
-------------------------------------------------------------------------S------
--------------------S----------S----------------------------------SS---S--------
---------------------------------------------------------------------------S----
--------------------------------------------------S-----------------------------
----------------------------------S---------------------------S-----------------
-------------------------------SSS----------------------S-----------------------
---------------------------------------------------------------------------S----
----------------S-------S------S----SS---------S------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--------------------------S--------------------------
--------------------------------------------------------------------S-----------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S----------------------------S-----------------S
-------------S-------------------------S--S-------------------------------------
---------------------------------------------------------S----------------------
-----S----------S-------------------S-----------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--------------------------------S-------
-------------------------------------------S-S-------------------S-----------S--
-------------------------------------------------------------------------S------
-----------------------------------------------S------------------------------S-
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----S-----SSS----S-------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S------------S------------------S--S-SS---S---
--------------S------S-S---------------------------------------------S----------
-----------------S-----------------------SS-------------------------------------
-------------------------------------------S-------S----------------------------
---------------------S----------------------------------S-----------------------
-----------------------------------------S-----------------------------------S--
-----------------------------------------------------------S--------------------
-----------------S--S---------S-------------------S------S----------------------
------------------------------------------------S-------------------------------
----------------------S--------------S------------------------------------------
------------S--------------SSS-----------------------------SS-------S-------
>forward_695
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TACCAGCACGCTCATGTTGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>reverse_2371
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------CGCAGGACCTACCCTTCAAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>forward_2316
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------CCGGCATTTATGGTGCATCG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>reverse_3826
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ACAGCCTGCTCACGA
GAAAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>forward_3233
--------------------------------------------------------------------------------
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------------ACCAAAAGAAGAGGGGATCGC-----------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>reverse_4172
--------------------------------------------------------------------------------
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-----------CGTATACCTCGCCGCTGTTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
