>input_sequence_25961
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------------------------------------------------------------ATGCGGCTGGTCGGCCTGAC
GGGCGGGATCGCCTCGGGGAAGAGCACCGTCTCCGGCCTCTTCAAGTCCGCCGGCGTCCCGGTGGTCGACGCCGACGTCG
TGGCTCGGGTAAGCGT-------CCAGCATCAAACATGGCCGTGCGGAAATAAATATACATCGCTTGTTAGATTGTACCA
G--TACTGTGCAAAACTTTGTTTTCATGATGTGTCCATTGTGTTCTGTCTACGGAGGTACCGATATTTGTGAGCATTGTT
GCTGTTTTACTTGAATTCAGTCACAGCTAAGGTAGCA--------------------TTATACCAGAACAGAGTGTGGCA
ATTTTATTTT-GTAACAAGTTTGATTACGTCTGGATAGGT------TGCCCACATCAGGTATCTGTGGAGTGGGATAGGC
ACAATTTTCTGTGATGAAAAAAGAAGTTTTTTTTC-AAGCTAAAA--CAAAATTCACCCTCGTTTCAGTTAACTTACCAA
TTGTGCTCAGT-GAGAACTGCTTCCGCTTTATCGCATTGATATTAATTCCCCTTCCCATCTCCCTGGGAACTGATGGCTA
ACACTACA-------------------------------------------TATTTATTTCAACTTTGTGGAGGGCAAAG
ACATATGC-GGGTCTTACCTTGGGAGTTTTTTCATCCCTGATACTATTCCCAGTAACGAGGAATGGAACCGGTAGTTAAT
AGAATGTGATGGTGATGGCCAATTTAGTCATATCCCCTGCTTTGTCAGCCGGTGAGGATCATAGGATGGCAAACCATAAT
ATATATTCTTTGCTTCACTAAATTACCTGCTGCCATGCATCATAGCTCTTGAAAACAAATGAAATATGAAGAACTATATG
GCCTTCATCTATGTAACATGTGTATGCTGTA-------------------------------------------------
-----------------------------------GCTAAAAAGGCAGCCCTCGAGAGAATAGTTCTCATTTTGTCTCCA
TGGACAAAGGAAACTCCCGCGGACAATGTTTAAGAGAGGTCGGGGTAGACCAAATTTGACATGGGAGGAGTCCGTTAAGA
GGGACCTGAAGGATTGGATTATCACCAAAGAACTAGCTATGGACAGGGGCGCGTGGAAGCTTGCTATCCATGTGCCAGAG
CCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAGCTTGTTTGGGACTAAAGGCTTTGTTGTTGT
TGTTGTTGTTGGACAAAGGAAACTCCCACATGATCCGGGATCCTAGGATAAGAAGGGAAAGGAAAATGCAGACGAATAAG
AAGCCACAAGCCGGCATGATAGCAATGCCTGGCAGAAGCTCGGCAATACGTTGGGTGGAA----TAGTGGAAGTTAAGGC
CTTTAATTCCCAATCCCATGCTCAATCAGCCCCATGGGAGTAGATTGGAGTCAGTTGAGGCCAAAAGTCTCCATCCTCTG
TCTAGCTGGAACTCTGAATCTGTTTTCAACTTCTCATCAATATCTTAC-------CACTGCTGGGATATCCCTGGATCAA
AAATAAATGGAACCATATCAGCACAATGACTGGTATGACGCAA--------ATGTTATACTTTGGGCCTTGAGACGAGTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACGCACACTTTGTTTTCATGGTTTAGTACTTGAGCTTCAAACTGCATGCTTGTTACTACCTCCGTCCTA
AATTAGTTGTCTTAGATTTGTCTATATACGGATGTATCTAGCACTAAAACGTGTCTAGATACATACGTATCTAGACAAAT
CTAAGACAACTAATTCGGGACGGAGGGAGTACTATTTTAGGCTAATTGTCTGTTATGAGATCTCCCCAGATGCTGTGTAA
AATGACTTCCATGTTTTAAACTTTTTGTTATGAGCCTTATGCTGATTACGGGCGCACGCATTTACAGAATGTAGTGCAGA
AAGGTACTGGAGGTTGGAAGAAGATTGTGAAAGCTTTTGGGAATGGCATTCTGTTGGAAAATGGAGAAATTGACAGAGCT
CAATTGGGTCAGGTTGTTTTCACTGACCCAGAAAAACGCAAGCTTCTAAACCGGTACAACTTCTACTGGCATAAAAATCG
CCTTTGATTTTCTTTCTTTCTTTCTGTTATGTTTGCCCAATACATTTTTAT-----------TCAGTTTATTTACGTGGC
AGTTACATTTTTCTTTCATTTTTGCGATGTTGGCCAATAGATTTTTGATCCAGTTTATATACT-----------------
-------------------------------------------------------------------------GTACATG
GCAGTTACTACATAAATACTGCTTTCAGG-AAACAGTTCCACCTATTTATGGTCTCACATCTTGTCATGTTCTGGTTTCT
AGAAAAATGTCATGCTTTGGTTGCATATTCAGTTCATTGTTAACTCTGTGCATAAATATCGAGTTGTGTTTCATACATGG
ATGATGAAATGTGACACGATTTACCTTTAACAATACTGTTTATGTCATTCCTAAAATAGAACA-CCAAAGCAAAGTG-GG
TAGACCA----ACATACATTTCATTGCATGCTTATACTTT--CTCATGAATATAGTC--------CCTGAAATA-TAAGG
ATTCTTGTTTGACCTACATTTGCCTCGATTCTGATCCCTGACGACATTTTGGTTTCTCCATTGCGTCTACTTTCAGTCTT
CTGGCCCCACACATTTCATGCGGTATATTCTGGGAGATACTAAAACTCTGGGTGAAGGGATGCCTGGTTATTGTCGTCGA
CATCCCGCTCCTGTTTGAGACAAAGATGGACCGATGGACGGACCCCGTGGTTGTCGTATGGGTGGATCCCAAAACACAGA
TCGAGAGGCTCATGTCAAGAGACAGTTGCGGCCAGGAACAGGCTCAGGGCAGGATCGACGCCCAGCTTGCGTTGGACTGG
AAGAAGTCGGAAGCCGACATAGTGATCGACAACTCCGGCTCGCTGGACGACACGAAAGAGCAGTTCCAGGAAGTGCTGAA
GCAGGTGTCTGGTCCCTTGACATGGAAGGAGCGCATGATGTCCAGGGATGGCCTTCTCTCTATCGTCGTGTGCACGGCGG
CGGGGGTTCTACTTGCTCAGAAGAATCTGCTGTGA---------------------------------------------
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-------------------------------------
>chr3A_1_TraesCS3A01G010100
CGGGCAGGTCAGACCAGGTGGGTGCGGGCGCGGTCCGACCAGGCGGGGGATAAACGCAAATTCATCGTTTTTGCAACAAA
CCTCCTTGTATTCTCCCGTGCAGCTGAGCTGGCGGTCAAAGCCCGCGTGGACTAGCCAGTCAACAGCCAAGTCAGCGCAT
ACGTAGAGGAAATGGTATTTTGGACCGTAGACGACCACCTGAGACAAGTTGTAGGACTGTATTTCGGGTATTTGCAAGTG
CGAGGAGAAATGCGGCCAACGCGACAAGTATGGGGACCTACAGTGAATTTTCCTTTCTATCATACATAAAGAAGATGTAA
ATTCATTTACACATTGAGAAACAAAGCCAAACAAATTTTCTGTTACAACAACTAATCCAAAAAATATTCTGAGTAGTAGT
CTGGTCAACTATTAATTGCACACAAAAACTCGCATTTTCGGGATATATATAGACAATATTTATATAGAAGCTCTATAAAT
TTTGATGCAGATTAAACTTTTCTAGAGGTGTGTACCTAAGAAAAATTCTTTTATTATCTTTCTGTTTTTTAATAATGTTT
TTAGGTTTA-AAAACAACTATCGGTAAATACGGCCGACGTCGTTGAAATCCTCTCCTCTATTTTGACTCTCTCTCTCTCT
CTCTCACGACTCACCCGTGACGGCGGCGGCGTCCGGCGGCCGACCCCACGACCCGGCGCCGGCAAGGCGAGAAAGAGAGG
CTC-----------GCGGCGTGGAGAGGTCCCTCTGCTTCCGCACCACGCGCGGACGCCG-------CTCGGCCTCGAGA
TCTCAAGGTAATTCCCCCAAGAAACGCAGCGCCGTCCCAAGCGGCGGACTTTTTCCCCCCTCCGGATTCGCCGCCCTCCG
CTCACCCTGCCCTGCCGCGGCGCCACGCCGGAGCAACCCCTCTCGGTTCCTCTCCGGCGACCTGCGATCGGATTTAGTTT
TT-TTCTCCTGTTCTGTCTGTCCCCGATGTGAGCCCGTTTCCGGTGGACCTGGATTTCAGATGCGGCTGGTCGGCCTGAC
GGGCGGGATCGCCTCGGGGAAGAGCACCGTCTCCGGCCTCTTCAAGTCCGCCGGCGTCCCGGTGGTCGACGCCGACGTCG
TGGCTCGGGTAAGCGT-------CCAGCATCAAACATGGCCGTGCGGAAATAAATATACATCGCTTGTTAGATTGTACCA
G--TACTGTGCAAAACTTTGTTTTCATGATGTGTCCATTGTGTTCTGTCTACGGAGGTACCGATATTTGTGAGCATTGTT
GCTGTTTTACTTGAATTCAGTCACAGCTAAGGTAGCA--------------------TTATACCAGAACAGAGTGTGGCA
ATTTTATTTT-GTAACAAGTTTGATTACGTCTGGATAGGT------TGCCCACATCAGGTATCTGTGGAGTGGGATAGGC
ACAATTTTCTGTGATGAAAAAAGAAGTTTTTTTTC-AAGCTAAAA--CAAAATTCACCCTCGTTTCAGTTAACTTACCAA
TTGTGCTCAGT-GAGAACTGCTTCCGCTTTATCGCATTGATATTAATTCCCCTTCCCATCTCCCTGGGAACTGATGGCTA
ACACTACA-------------------------------------------TATTTATTTCAACTTTGTGGAGGGCAAAG
ACATATGC-GGGTCTTACCTTGGGAGTTTTTTCATCCCTGATACTATTCCCAGTAACGAGGAATGGAACCGGTAGTTAAT
AGAATGTGATGGTGATGGCCAATTTAGTCATATCCCCTGCTTTGTCAGCCGGTGAGGATCATAGGATGGCAAACCATAAT
ATATATTCTTTGCTTCACTAAATTACCTGCTGCCATGCATCATAGCTCTTGAAAACAAATGAAATATGAAGAACTATATG
GCCTTCATCTATGTAACATGTGTATGCTGTA-------------------------------------------------
-----------------------------------GCTAAAAAGGCAGCCCTCGAGAGAATAGTTCTCATTTTGTCTCCA
TGGACAAAGGAAACTCCCGCGGACAATGTTTAAGAGAGGTCGGGGTAGACCAAATTTGACATGGGAGGAGTCCGTTAAGA
GGGACCTGAAGGATTGGATTATCACCAAAGAACTAGCTATGGACAGGGGCGCGTGGAAGCTTGCTATCCATGTGCCAGAG
CCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAGCTTGTTTGGGACTAAAGGCTTTGTTGTTGT
TGTTGTTGTTGGACAAAGGAAACTCCCACATGATCCGGGATCCTAGGATAAGAAGGGAAAGGAAAATGCAGACGAATAAG
AAGCCACAAGCCGGCATGATAGCAATGCCTGGCAGAAGCTCGGCAATACGTTGGGTGGAA----TAGTGGAAGTTAAGGC
CTTTAATTCCCAATCCCATGCTCAATCAGCCCCATGGGAGTAGATTGGAGTCAGTTGAGGCCAAAAGTCTCCATCCTCTG
TCTAGCTGGAACTCTGAATCTGTTTTCAACTTCTCATCAATATCTTAC-------CACTGCTGGGATATCCCTGGATCAA
AAATAAATGGAACCATATCAGCACAATGACTGGTATGACGCAA--------ATGTTATACTTTGGGCCTTGAGACGAGTG
--------------------------------------------------------------------------------
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-----------ACGCACACTTTGTTTTCATGGTTTAGTACTTGAGCTTCAAACTGCATGCTTGTTACTACCTCCGTCCTA
AATTAGTTGTCTTAGATTTGTCTATATACGGATGTATCTAGCACTAAAACGTGTCTAGATACATACGTATCTAGACAAAT
CTAAGACAACTAATTCGGGACGGAGGGAGTACTATTTTAGGCTAATTGTCTGTTATGAGATCTCCCCAGATGCTGTGTAA
AATGACTTCCATGTTTTAAACTTTTTGTTATGAGCCTTATGCTGATTACGGGCGCACGCATTTACAGAATGTAGTGCAGA
AAGGTACTGGAGGTTGGAAGAAGATTGTGAAAGCTTTTGGGAATGGCATTCTGTTGGAAAATGGAGAAATTGACAGAGCT
CAATTGGGTCAGGTTGTTTTCACTGACCCAGAAAAACGCAAGCTTCTAAACCGGTACAACTTCTACTGGCATAAAAATCG
CCTTTGATTTTCTTTCTTTCTTTCTGTTATGTTTGCCCAATACATTTTTAT-----------TCAGTTTATTTACGTGGC
AGTTACATTTTTCTTTCATTTTTGCGATGTTGGCCAATAGATTTTTGATCCAGTTTATATACT-----------------
-------------------------------------------------------------------------GTACATG
GCAGTTACTACATAAATACTGCTTTCAGG-AAACAGTTCCACCTATTTATGGTCTCACATCTTGTCATGTTCTGGTTTCT
AGAAAAATGTCATGCTTTGGTTGCATATTCAGTTCATTGTTAACTCTGTGCATAAATATCGAGTTGTGTTTCATACATGG
ATGATGAAATGTGACACGATTTACCTTTAACAATACTGTTTATGTCATTCCTAAAATAGAACA-CCAAAGCAAAGTG-GG
TAGACCA----ACATACATTTCATTGCATGCTTATACTTT--CTCATGAATATAGTC--------CCTGAAATA-TAAGG
ATTCTTGTTTGACCTACATTTGCCTCGATTCTGATCCCTGACGACATTTTGGTTTCTCCATTGCGTCTACTTTCAGTCTT
CTGGCCCCACACATTTCATGCGGTATATTCTGGGAGATACTAAAACTCTGGGTGAAGGGATGCCTGGTTATTGTCGTCGA
CATCCCGCTCCTGTTTGAGACAAAGATGGACCGATGGACGGACCCCGTGGTTGTCGTATGGGTGGATCCCAAAACACAGA
TCGAGAGGCTCATGTCAAGAGACAGTTGCGGCCAGGAACAGGCTCAGGGCAGGATCGACGCCCAGCTTGCGTTGGACTGG
AAGAAGTCGGAAGCCGACATAGTGATCGACAACTCCGGCTCGCTGGACGACACGAAAGAGCAGTTCCAGGAAGTGCTGAA
GCAGGTGTCTGGTCCCTTGACATGGAAGGAGCGCATGATGTCCAGGGATGGCCTTCTCTCTATCGTCGTGTGCACGGCGG
CGGGGGTTCTACTTGCTCAGAAGAATCTGCTGTGATCTTTTCACGC---TTAGGAAGTTAAGGTAACTAGGATTGGACTA
AGATTGATTGGTTGAAAATTTCGAAGGGTCAGTGCAGAGCACT-AGGCGAGCACGATTACTGTCCTGTCATGTCTGGAGT
TA-----TTAT---ACCACAAGTGCTGAATTTCGAGTGAAATAAAATTTGCAA-CTGCTTGCTTGTGTATCTCTGTGCAG
TTTTCATAGGATTCATGTTTTATTCTTATCA-AAGGAATTACTTGTACAGGTTTGACGAAATTCCTTTGAAAATTGAATC
ATTCAGTCCCAAATACTCCAGGTAGCAGCAATAACTATCACTATGTAAGAGGCTATTCCCAGGTCTTGTCTATGTGTCTG
GATTTTGTTTGCCTTGGAGCCCTGCAACTGGGCATAGAAAATTCTAACATGCTATTCCAACATGCTCTGGCA--------
-----GATCCTCTGTTTCAAGGCAATTAGGAGCACATAGGATAGTCATAGATTGCAAGTAAAAATGCTTCATCTGCAACA
TTTTGTATTCAATCTGTTCACCAGAAGTAGCCACATAAAACATAATATTGCGTG-CATTATACAACCAGATAAAAATTGC
AGAACTACC-----AAACTCCACTTAAGATCAATGCAACATAATAAATAGAAGATCAGTGGAACATATAAATAAATAAAT
AGCTTAATGTCATTCATCAACCACCAACAAGCAAACAAGCCCTCTGTTTGCATGAGTGCACAATATAACTTACATCAAGA
AACCCCACAAACTGAGAAACAGACATCATTTGTACAGAGACAGCACATGCCACTCTCACATCTGTG-AATAAATACGCAA
AGTGAGATGAAATAGTTAGGACACAAAAACCCTTGTGACTGACCTCGCTCACGGCACATTCAC-ACCCCGTGTGCATAAC
TTATTATCATGACATATAACTTAA---CCACCGCAAACCTCGATCGAAGCCG-AAGTCACTCTCATAACTTATGGAGAAA
AAGCCTTCTCCC---CCTCCTGGACTCAGATTTCACC
>chr3D_494
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-------------AAACTTTTCTAGGGGA-TGTATCAAAGCAAAACTCTTTGTATATCTTTCT-TTTTTGAATAATGTTT
TTAGGTTTA-CAAACAACTACGGGTAAATACGGCCGACGTCGTTGAAATCCTCTCCTCTCTTTGA-----------CTCT
CTCTCACGACTCACCCGTGACGGCGGCGGCGTCCGGCGGCCGACT-------------------AGGGGAGGAAGACAGG
CTCGCGGCGTAGCGGCGCCGCGGAGAGGTCCCCCTGCTTCCGCACCACGCGCGGACGCT-------ACTCGGCCTCGAGA
TCTCAAGGTAATTCCCCCAAGAAACGCAGCGCCGTCCGAAGCGGCGGACTTT---CCCCCTCTGAATTCGCCGCCCTCCG
CTCACCCAGCCCTGCCGCGGCGCCACGCCGGAGCAACCCCTCTCGACCCCTCTCCGGCGGCCTGCGATCGGATTTAGTTT
TCGATTTCCTTTTCTGCTTGTCCCCGATGTGAGCCCGTTTCCGGTGGACCTGGATTGCAGATGCGGCTGGTCGGGCTGAC
GGGCGGGATCGCCTCGGGGAAGAGCACCGTCTCCGGCCTCTTCAAGTCCGCCGGCGTCCCGGTGGTCGACGCCGACGTCG
TGGCCCGGGTAAGCCT-------CCAA-----------------------------------GCTTGTTAGATTGTACTT
TACTACTGTGCAAACCTCTGTTTTGATGGTCTGTCCATTGTGCTCTGTCTACGGAGGTCTCGATGTTTGCGAGCATTGTT
GCTGCTTTACTTGAATTCAGTCACAGCGATGGTAGTAACAATTTTGTTTCGTTGCTGTTTTACTAGAACAGAGTGTGACA
ATTTTAATTTTGTAACAAGTTCTATATATAGCATGCGGATAGGTTGTGCCCACTTCGGCTATTTGTGGACGGGGATAGAT
GTGATTCTCTGTGATGAAAAAAGAAGATTTTTTTCCAAGCTAAAA--CAGAATTCACCCTCGTTTTAGTTAACTTACCGA
CTGTGCTCGGTGGAGAACTGCTTCCGTTTTATTGCGTCGATGTTAATTCCCTTTCCTATCTCCCTGGGAACTGGGTCTTA
CCTTGTCGATGCTAAAACAAAATTCACCCTCGTTTTCAAGCTAACACTTGGTATTTATTTTAACTTTGTGGAGGGCAAAG
ACATATGCTGGGTCTTACCTTGGGAGTTTTCTCACCCCTGACACTACTCCCAGTAACGAGGAATGGAACCTGTAGTTAAG
AGAACGTGATGGTGATGGCCAATTTAGTCATATCCCCTGCTTTGTCAGCCGGTGAGGATCATAGG---------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TTGTCTCCA
TGGATAAAGGAAACTCCC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACACGATTCGGGATCCTAGGATAAGAAGGGAA--GAAAATGCAGACGAATAAG
AAGCCACAAGCCAGCATGCTAGCAATGCCTGGCAGAAGCTAAGGAATACATTAATACCCAATCCTAGTGGAAGTTAAGGC
CTTTAATTCCCAATCCCATGCTCAATCAGCCCCATGGGAGTAGATTGGAGTCAGTTGAGGCGAAAAGTCTCCATCCTCTG
TCTAACTGGAACTCTGAATCTATTTTCAACTTCTCATCATTATCTTAC-------CATTGCTGGGATATCCCTGGATCAT
AAATAAATGGAACCATATCAGCACAATGACTGGTATGACGCAA--------ATGTTATACTTTGGGCCTTGAGACCAGTT
ACGCACGCTTTGCTTCATGGTTTAGTACTTGAGCTTCAGACTGCAAGCTTATTACTACCACCGTCCTAAACTAGTTGTCT
TAGATTTGTCTAGATACGGTTGTATCTAGCACTAAATGTGTCTAGGTGCTTCCGTATCTAGGCAAATCTAAGACTACCCT
TGAGACCAGTTACACACACTTTGCTTTCATGGTTTAGTACTTGAGCTTCAGACTGCAAGCTTAGTACTACCTCCGTCCTA
A-TTAGTTGTCTTAGATTTGTCTAGATACAGATGTATCTAGCACT-AAATGTGTCTAGATGCATCCGTATCTAGAAAAAT
C---GACAACTAATTTGGGACGGAGGGAGTACTATTTTAGGCTTATTATTTGTTGTGAGATCTCCCCAGACAC--TGTAA
AATGACTTC-ATGTTGTAAACTTTTTGTTATGAGCCTTATGCTGATTACGGATACATG-ATTTACAGAATGTAGTGCAGA
AAGGTACTGGAGGTTGGAAGAAGATTGTAAAAGCTTTTGGGAATGGCATTCTGTTGGAAAATGGAGAAATTGACAGAGCT
CAGTTGGGTCAGATTGTTTTCTCTGACCCAGAAAAACGCAAGCTTCTAAACCGGTACAACTTCTACTGGCATTGCTTTTG
ATTTTC--TTTCTTTCTTTCTTTCTGTTATGCTTGCCCAATATAT-TTTAT-----------TCAGTTTATTTACATGGC
AGTTACATTTTTCTTTC-TTTCTGCTATGTTGGCCAATAGAATTTTGATCCAGTTTGTATAC------------------
-----------------------------------------------------------------------------ATG
GCAGTTACTATATAAATACTGCTTTTGGG-AAGCAGTTCCACCTATTTCTGGTTTGACATCTCATCATGTTCTGGTTTCT
AGAAAAATGTCATACTTCGGTTGCATATTCAGTTCATTGTTAACTGTGTGCATAAATATCGACTTGTGTTTCATAAATGG
ATGATGAAATGTGACAAGGTTTACCTTTAACAATACTGTTTATGTCATTCCTAAAATAAAAACATCACAGCAAAGTG-GG
TATAACA----AGATACATTTCATTGCATGCTCATACTCTTTGTCATGAATATAGTC--------CCTGAAATATCAAGG
ATTCTTGTTTGTCTACACCATGTCTCAATCCTGATCCCTGACTACACTTTGGTTTCTCCATCGTGGCTACTTTCAGTCTT
CTGGCCCCACACATTTCATGCGGTATATTCTGGGAGATACTAAAACTATGGGTGAAGGGATGCCTGGTTATCGTGGTCGA
CATCCCACTCCTGTTCGAGACAAAGATGGACCGATGGACGGACCCCGTGGTTGTCATATGGGTGGATCCCAAAACACAGA
TTGAGAGGCTCATGTCAAGAGACGGGTGCGGCCAGGAACAGGCTCAGAGCAGGATCGACGCTCAGCTTGCGCTGGACTGG
AAGAAGTCGGAAGCCGACATAGTGATCGACAACTCCGGCTCGCTGGACGACACGAAAGAGCAGTTCCAGGAAATGCTGAA
GCAGGTGTCTGCTCCCTTGACATGGAAGGAGCGCATGATGTCCAGGGATGGCCTTCTCTCTATCGTCGTCTGTACGGCAG
CGGGGGTTCTACTTGCTCAGAAGAATCTGCTGTGATCTTTTCATGCTTATTAGGAAGTTAAGGTAACTAGGATTGGACTA
GGATTGATTGGTTGAAAAATTCGAAGTGTCAGTGCAGAGCACAAAGACCAGCACGATTATGGTTCTGTCTA-TGTCATGT
TTTCGAGTTAT---ACTACAGGTGCTGAATTTGGAGTGAAAATAAATTTTGTAGCTGCTTGCATGTGC-TGTCTCTGCAG
TTTTCGTATATTTCTTTCTGAAGGAAACAGTAGGTTATTGACCTACATGAATACTCTGCTTGAGTGACAGCAAGATTTCC
AGAGTCAACCAGAATGTGGCAAAATGTCCTCATGCCCAATCAGAATTTGTTTAGACAAACTGCAGACCCATCTCAATCCT
TTCAGTAGAGGAATTCAATCTAAAACTTATTCACATAATCGAAAGGGGTCGTATCTATTTTCTCCCTCTTCAAACAACAC
CTAAGCAAATTGAGGGCTTTGATTTGCTGTCCTCGGCATCTTTCTATTAGCAATTAACAAGTGCCAAC------------
------------------------------------AAAACCAAAATACCACATTCATTGTACAAGCAGAAAAAAGTTGC
ACAGCTACCAACTTAAACTCCACTGAAGATCAGTGAAT--------------------------------ATAAATAAAT
AGTTTAATGTCATTCATCAACCACCAACAAGCAAACAAACCCTCTGTTTGCATGAGTGCACAATATAACTTACATCAAGA
AACCCCACAAACTGAGAAACAAACATCATTTGTACAGATACAGCACATGCCACTCTCACATCTGTG-A-TAAATATGCAA
AGTGAGATGAAATAATTAGGACACAAAAACCCTTGTGACTGACCTCGCTCACGGCACATTCGCAACCCCGTGTGCATAAC
TTATTTTCATGAC--ATAACTTAA---CCACCGCAAACCTCGGTTGAAGCCG-AAGTCACTCTCATAACTTACGGAGAAA
AAGCCTTCTCCC---CCTCCTGGACTCAGATTTCACC
>chr3B_518
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAGCAAAACTCTTTTTATATCTTTCTC-TTTTGAATAATGTTT
TTAGGTTTAGAAAACAACTACCGGTAAATACG------GTCGTTGAAATCCTGTCCTCTCTTTGA-----------CTCT
CTCTCGCGACTCACCCGCGACGGAGGCGGCGTCCGGCGGCCGACTCCGCGACCCGGCATCGGCACGACTCCG--------
--------GTAGCGGCGGCGCGGCGAGGTCCCTCTGCGTCCGTACCACGCGCCGACGCAATCCTCCACTCGGCCTCGAGA
TCTCAAGGTAATCCCCCCAAGAAACGCAGCGCCGTCCCAAGCGGCGGACTTT---CCCCCTCTGGATTCGCCGCCCTCCG
CTCACCCTGCCCTGCCGCGGCGCCACGCCGGAGCAACCCCGCTCGACCCTTCTCCGGCGGCCTGCGATCGGATTTAGTTT
TTATTTTCCTGTTCTGCCTGTCCCCGATGTGAACCCGTTTCCGGTGGACCTGGATTGCAGATGCGGCTGGTCGGGCTGAC
GGGCGGGATCGCCTCAGGGAAGAGCACCGTCTCCGGCCTCTTCAAGTCCGCCGGCGTCCCGGTGGTCGACGCCGACGTCG
TGGCTCGGGTAAGCGTCCAGGCTCCAGCATCCAACATCGCCGTGCCGAATTATAG-TACATTGCTTGTTAGATTGTACT-
G--TACTGTGCAAGCCTCTGTTTTGATGA--------------TCTGTCTACGGAGGTACCGATATTTGCGAGCATTGTT
GCTGTTTTACTTGAATTCAGTCACAGCAATGGTAGTG--------------------CTATACCAGAACAGAGTACCACA
ATTTTAATTTTGTAACGAGTTCGATATATAGCATGCGGATATGTTGTGCCCACATCAGCTATTTGTGGACGGGGATAGGT
GCAATTTTCCATGATGAAAAGAGAAGAATTTTTTC-AAGCTAAAAAACAAAATGCACGGTTGTTTCAGTTAACTTACCGA
TTGTGCTCAGTAGAGAATTGCTTCCGTTTTGTCGCGTCGATGTTAGTTCCCTTTCCCGTCTCCTTGGGAACTGATGGCTA
ACACGGC-------------------------------------------GTATTTATTTTAACTTTGTGGAGGGCAAAG
ACATGTATTGGGTCTTACCTTGGGTTTTTATTCATCCCTGATACTACTCCCAGTAACAAGGAATGGAACCGGTAGTTAAG
AGAATGTGATGGTCATGGCCAATTTAGTCATATCCCCTGCTTTGTCAGCCGGTGAGGATCATAGGATGGCGAACCATAAT
G--TATTCTTTGATTCACTAAATTACCTGCTGCCACTCATTATAGCTCTTAAAAATAAATGAAATATGACAAACTATATA
GCCTTCGTGTATGTAGCATGTGTATGATGTACTCCCTCCATTCCATTTTACTTGTTGCTGATTTAGTACAAAGTTGTACT
AAATCAGCGACGAGTAATATGGAACGGAGGGAGTAGCTAAAAAGGCAGCCCTCTAGAGAATAGTTCTCATTTTGTTTCCA
TGGACAGAG-AAACTCCG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGCGGTTAAGGGGCCTAGGATAAGAAGGGAAAGGAAAATACAGACGGATAAG
AAGCCACAAGCCAGCACGCTAGCAACGCCTGGCAGAAGCTTGGCAATACATTAGGTAGAA----TAGTGGAAGTTAAGGC
CTTTAATTCCCAATCCCATGCTCAATCAGCCCCATGGGAGTAGATTGGAGTTAGTTGAGGCCAAAAGTGTCCATCCTCTG
TCTAACTGGAACTCTGAATCTGTTTTCAACTTCTCATCAATATCTTACCAGTTACCATTGCTGGGATATCCCTGGATCAA
AAATAAATGGAACCACATCAGCACAATGACTGGTATGACGCAATATTACATATGTTGTACTTTGGGCCTTAAGACCAGTT
GGGCATACAGAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CACTTTGCTTTCATGGTTTAGTACTTGAGCTTCAGACTGCATGCTTAT----------------
--------------------------------------------------------------------------------
-----------------------------TACTATTTCAGGCTTATTATTTGTTATGAGATCTTCCCAGATGCTGTGAAA
AATAACTTC-ATGTTTTAAGCTTTTTGTTATGAGCCTTATGCTGATTACGGATACACACATTTACAGAATGTAGTGCAGA
AAGGTACTGGAGGTTGGAAGAAGATTGTAAAAGCTTTTGGAAATGGCATTCTGTTGGAAAATGGAGAAATTGACAGAGCT
CAATTGGGTCAGATTGTTTTCTCTGACCCAGAAAAACGCAAGCTTCTAAACCGGTATAACTTCTACTGGCATAAATATCA
CCTTCGATTTTCTTTCTTTCTTTCTGTTATGCTTGCCCAACATAT-TTTTTTATTCAGTTAATCAGTTTATTTACACGGC
AGTTACATTTTTCTTTCC-----------TTGGCCAATAGATTTTTTATCCAGTTTATATACTCCCTCCGTCCCAAAATA
AGTGTCTTGAGCTTAGTACAAATTTGTACTAGAGCTAGTACAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACATG
GCAATAACTACATAATTACCTATTTAAGG-AAATAGTTCCACCTATTTGT-GTCTCACATCTCATCATGTTCTGCTTT--
--------------------------------------GTTAACCGTGTGCCAAAATATATAGTTGTGTTCCATACATGG
ATGATGAAATGCAACAAGGTTTACCTTTAACAATGCTCTTTATGTCATTTATAAAATAAAAAA-CCACTGCAAAGTG-GG
TATA-----------ACATTTCATTGCATGCTTATACTCT--GTCATTAATATGATC--------CCTGAAATATCAAGG
ATTCTTGTTTGCCTACTCTCTGGCTCGATCCTGATCCCTGACGACACTCTGGTTTCTCCATCGCGTCTACTTTCAGTCTT
CTGGCCCCACACATTTCATGCGGTATATTCTGGGAGATACTAAAACTGTGGGTGAAGGGATGCCTGGTTATCGTTGTCGA
CATCCCGCTCCTGTTTGAGACAAAGATGGACCGATGGACGGACCCCGTGGTTGTCGTATGGGTGGATCCCAAAACACAGA
TCGAGAGGCTCATGTCAAGAGACGGGTGCGGCCAGGAACAGGCTCAGAGCAGGATCGACGCACAGCTTGCGCTGGACTGG
AAGAAATCCGAAGCCGACATAGTGATCGACAACTCCGGCTCGCTGGACGACACGAAAGAGCAGTTCCAGGAAGTGCTGAA
GCAGGTGTCTGGTCCCTTGACATGGAAGGAGAGCATGATGTCCAGGGATGGCCTTCTCTCTATCGTCGTGTGCACGGCGG
CAGGGGTTCTACTTGCTCAGAAGAATCTGCTGTGACCTTTTCATGC---TTAGGAAGTTAAGGCAACTAGGACTGAACTA
AGATTGATTGGTTAAAAATTTCGAAGTGTCGGTGCAGAGCACT-AGGCGAGCACGATTACTGTTCTGTTATGTCTGGAGT
TA-----TCAT---ACCACAAGTGCTGAATTTCGAGTGAAATAAAATTTGT-A-CTGCTTGCTTGTGC-TGTCTCTGCAG
TTTTCATAGGATTCATATTTTATTTCTTATCGAAGGAATTATTTGTACAGTTTTGACGAAATTCCTTTGAAATTCGAATC
ATTCAGTCCCAAATACCCCATGTAGCAGCAATAATTATC-----------------------------TCCATGTATCTG
GATTTTGTTTGCCTT-GAGCCCTGCAACTGGGCATAGAAAATTCCAACATGCTCGGGCAAACTGACAGTCAGAATAGGTG
GTGATGATCCTCTGTTTCAAGGCAATTAGGAGCACATAGGT----------TTGCAAGTAAAAATGATTCCTCTG-----
------ATTCAATCTCTTCCTCAGAAGAAGCCACATAAAACCACAATATCACACCCATTATACAACCATATAAAATTGCA
CATA-------------------------------------AATAAATATAAGATGAGTGGAACATATAAATAAATAAAT
AGCTTAATGTCATTCATCAACCACCAACAAGCAAACAAACACTCTGTTTGCATGAGTGCACAATATAACTTACATCAATA
AACCCCATAAATCAACAA----ACATTATCTGTACAGAGACAGCACATGCCACTCTCACATCTGTGAA-TAAATATGCAA
AGTGGGATGAAATAATTAGGACAGAAAAACCCTTGTGACTGACCTCGCCCACGGCACGTTCGCAACCCCGTGTGCATAAC
TTGTTATCATGAC--ATAACTTAATTGCCACCGCAAACCTCGGTTGAAACCGAAAGTCACTCTCATAACTTAGGGAGAAA
AAGCCTTCTCCTCCTCCTCCTGGACTCGGATTTCA--
>chr3A_2764
TTTTTGTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------TGAACTTTATGCTGATTACGGAGACATGCATTTACAGAATGTAGTGCAGA
AAGGTACTGGAGGTTGGAAGAAGATTGTAAAAACTTTTGGAAATGACATATTATTGGAAAATGGAGAAATCGACAGAGCT
CTCTTAGGTCAGATTGTTTTCTCTGATCCAGCAAAAAGGAAACTTCTAAACCGGTACAACTCCTACCAACATAAATATTG
CA--TC--CTGTTTCCTTTCTTTTCGCTATG-------------------------------------------------
----------------------------GTTACTGAATAGATATGTGATCCAGATTATATAT------------------
-----------------------------------------------------------------------------ATG
GTAATTACTACAAAATTACTG-TTTTAAG-AAACAATTCCACCTATTTCTGGTATCACGTCTTGCCTTGTTCTGGTTTCT
AGAAAAATGCCATACTTCCATTGGATATTCAGTTCACA-TCAACTGAGTGCATAGATTTCGAGTTATGTTTCATACATGG
ATGATGAAATGTGATAAGGTTCACCTTGAACAATACTAATTATGTCATATATAAAATAAAAATACCACCGCAAAAGTGGG
TACAGCAAGATACTTACATTTCCTAGCATGCTTATACTTT--GTCATCAGTA--GTC--------CCTGCGATATTAAGG
ATTCTTGTTTTTCAACATTATTCCTTGATCCTGGGCCCTGATTAAATTTTGGTTTGTTCATTGTGGCTACTTTCAGTCTT
CTGGCCCCACATATTTCATTTGGTATATTTTGGGAGATACTAAAACTGTGGGTGAAGGGATGCACGGTTATCAGTGTCGA
CATCCCGCTGTTGTTCGAGACAAAGATGGACCGATGGACGAACCCAGTGGTTGTTGTATGGGTGGATCCCAAAACACAGA
TTGAGAGGCTCATGTTAAGAGATGGGTGCAGCGAGGAACAAGCTCAGAACAGGATCAGCTCACAGCTTGCGCTGGACTGG
AAGAAGTCCGAAGCCGATATAGTGATCAACAATTCTGGCTTACTGGAGGACACAAAAGAACAGTTCCGAGAAGTATTGAA
GCAAGTCTCTGCTCCCTTGACATGGAAGGAGCGCATGAGATCCAGGGATGGCTTTCTGTCTATCGTCATGTGCACGGCAG
CGGGGGTTTTACTTGCTCGGAAGAATCTGGTATGATCTTTGCATCA---TTAGGAAGTTA---------GGACTGAACTA
-GGTTGATTTTTTGAAAATTTGGGAGTGTCGTTGCAGAGCACT-AGACCATCAAGATTATGGTTTTGTGTCGTGTCATGT
TT-----TTTAGTTGCCACAAGTGCTGAATTTTGAGTGAA----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>chr3D_2764
TTTTTGTT------------------------------------------------------------------------
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------------------------------TGAATTTTATGCTGATTATGGAGACATGCATTTACAGAATGTAGTGCAGA
AAGGTACTGGAGGTTGGAAGAAGATTGTAAAAACTTTCGGAAATGACATATTATTGGAAAATGGAGAAATTGACAGGGCT
CTCTTAGGTCAGATTGTTTTCTCTGACCCGGCAAAAAGGAAACTTCTAAACCGGTACAACTCCTACTAACATACATATTG
CA--TC--CTGTTTCCTTTCTTTTTGCTATG-------------------------------------------------
----------------------------GTTAGTCAATAGGTATGTGATCCAGTTTATATAT------------------
-----------------------------------------------------------------------------ATG
GCAATTACTACATAATTACTG-CTTTAAGAAAACAACTCCACCTATTTCTGGTATCACATCTTGCCTTGTTCTGGTTTCT
AGAAAAATGTCATACTAACATTGGATATTCAGTTCACA-TTAACTGAGTGCATAAATTTCGAGTGACGTTTCATACATGG
ATGATGAAATGTGATAAGGTTCACCTTTAACAATAGTAATTATGTCATATGTAAAATAAAAAAACCACAGCAAAAGT-GG
TACAGCAAGAAATTTACATTTCCTTGCATGTTTATACTTT--GTCATCAATA--GTCCCTGGCTCCCTGCGATATTAAGG
ATTCTTATTTTTCTACATTACTCCTCGATCCTGGGCCCTGACTGAATTTTGGTTTGTTCATTGTGACTACTTTTAGTCTT
CTGGCCCCACATATTTCATGTGGTATATTTTGGGAGATTCTAAAACTGTGGGTGAAGGGATGCACGGTTATCTCTGTCGA
CATCCCGCTGTTGTTTGAGACAAAGATGGACCGATGGACGAACCCAGTGGTTGTTGTATGGGTGGATCCCAAAACACAGA
TTGAGAGGCTCATGTTAAGAAATGGGTGCAGCGAGGAACAAGCTCAGAACAGGATCAGCGCGCAGCTTGCACTTGACTGG
AAGAAGTCCGAAGCAGATATAGTGATCAACAATTCTGGCTCACTGGAGGACACGAAAGAACAGTTCCGAGAAGTGTTGGA
GCAAGTCTCTGCTCCCTTGACATGGAAGGAGCGCATGAGATCCAGGGATGGCTTTCTGTCTATCGTCATGTGCACGGCAG
CGGGGGTTTTACTTGCTCAGAAGAATCTGTTATGATCTTTGCATCG---TTAGGAAGTTA---------GGACTGAACTA
-GGTTGATTTTTTGAAAAATTGGGAGTGTCGTTGCAGAGCACT-AGACCATCAAGATTATGGTTGTGTCATA--TCATGT
TT-----TGGAGTCACCGCAAGTGCTGAATTTTGAGTGAA----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------S--SS----S-S---S----S------SS---------S-----S----------
--------------------S--------------------------------------S---SSSSSSSSSSSSS----
--------------------------------------------S--S---------SS------------S----S---
--------------------S-------------------------------------SS--------------------
----------------------------------------------------SSS-------S-----------------
---------------------------------------------SSS-----------S--------------------
-----S----------S---------------------------------------S-----------------S-----
--------------------------------------------------------------------------------
-------------------------------S-----S-------S---S--S-SS-----S----------------SS
--------------S--S------S-----S-----------S--------------------------S----------
---------------------------S-S-----S-----------------------------------------S--
------S--------------S---SSSSSSSSSSSS-S-------------------S---S------SS--------S
S-------------------------S---------------------------------------------------S-
--------------------------S--------S-S---S---------S----------------------------
----SS-S----------------------------------------------------S-------------------
----------------------------------------------S--------------------------------S
----------------------------------------------------------------------S---------
SSS---------S----------------------SS---S---------S----S-------------SS--------S
------S-S------S----------S-----------------------------------------------------
-----------------------------------------------------S--------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S---------------------------------------------
------------S-----S---------------------S--------S--S---S-----------------------
--------------------------------------------------------------------------------
----S----------------------------------------------------S----------------------
---------------------------------------------------------------------------S---S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S---------S--------------------------S-----------S-----------------
-S----------------------S----S---------------S---S----------S---S----------S----
-SSS-----------S---------------------------S---S-S------------------------------
---------S-----------------------------------------SSS--------------------------
----------------------------S---------------------------------------------------
------------S--------S-----------------------------------------------------S----
-------------------------------S----------S--S-----------------------------S----
-----------------S---S---S------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S----------------------S-------------------------------
-------------S---S---------------------------S----------------------------------
----------------S-S---------------------------------------S--S-----S------------
--S-S-------------------------------------S-------------------------------------
-----------S-SSSSS-S---------S--------------------------------------------------
-----------------------------------------------S-----------------------S--S-----
--------------------------------------------------------------------------------
-----------------------S-S---------------------S-------------S---------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------S------------------------------------S----------------
--------------------------------------------------SS---------------SS-S---S-----
----------------S-------SS-SSSS-------------------S-----------------------S-----
--------------------S------------------S-SSSS-SS-SSSSS-SSSS-S-SSSSSS-------S----
---------------S----------------------------S--------SS-S---SS---SSSSS----------
----------------------------------------S-SS-SS---S---------------S---S----SSSSS
SSSSSS---------S---SS------S-------------SS--SSS-SSSSS---------------------S----
-S----------------------S-------S--S-SSSS--------S-----S------------------------
--------------------------------------S-----------------------------------------
---------------------S----------------------------------------------S------S----
--------------S----------------------------------------------S------------------
-------------SS---------------------------S-S---------------------------S-------
-------------------------------------
>forward_254
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--------------------------------------------------------------------------CAAGTG
CGAGGAGAAATGCG------------------------------------------------------------------
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>reverse_2276
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-----------------------------------TCTAGCCTACCCCAGCTTGT-------------------------
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>forward_1441
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-------------------------------------------------------------TCTGTGGAGTGGGATAGGC
A-------------------------------------------------------------------------------
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>reverse_3056
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---------------CGGGACGGAGGGAGTACTAT---------------------------------------------
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>forward_2295
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-----------------------------------TCTAGCCTACCCCAGCTTGT-------------------------
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>reverse_4048
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-----------------------------------------------CTGGGTGAAGGGATGCCTG--------------
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-------------------------------------
>forward_2720
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------------------------------------------------------------TTTGGGCCTTGAGACGAGTG
--------------------------------------------------------------------------------
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>reverse_4232
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-----------------------------------------------------------------------TTGGACTGG
AAGAAGTCGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>forward_3173
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---------------------------------GCCTTATGCTGATTACGGGC---------------------------
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>reverse_5159
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--------------------------------------GCCCTCTGTTTGCATGAGTG----------------------
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-------------------------------------
