>input_sequence_25810
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-------------------------------------------------------------------TTATATATACCCT
GCAATGGCAGGGACTGAGTTGGTGCAATCAAAAGTCGCCAGCAACCATCTCTTCTTGCTTCATTCGGTCTCTAGGCGGCT
AGCCATTACGACAACACATCCCAGATATAGTCAGTAGTACTAGCTAGCAAGCAAGATAC---TAGCCAGGTGTTGTCCAT
GGAGGAGATGGGGGAGGAGAGCAGCAGGTATCCATGGCAGGACTACGACATCGGCTTCGGGGAGGAGCTCATGAGGGAGC
TCCTTGACGAGACGACGACGGCGCCATCTCTAGCAGCAACACCAACGGCGCCCGGCGCCGTGAGCGCTGACAATTCTTCT
TCTTCCGATAAGGGAATTGGTGACGAGGAGGAAGGGGCGGCGGGGCGCCGGGAGTCCATGGTGAACAGGCTCATGTCGAC
GGTCTACTCCGGGCCCACCCTCAGCGACATAGAGAGCGCCCTCTCCTTCACCGGCGCTGGCGCCGGCGACCCGCTGGACG
GCCGCAGCAAGTACCACTACAGCCCCTCCAGCCCAGTGTACGTCCCTCATATCTATGCCAAGAACAACCATCTATGTACA
ATTCTCCGTAGATTCAAGCTCAGTTTGGACATCTGTATGGAAACTCAGGGTTTTCTCGCCGGAGAAGGTGCTGGGCAAGA
TGGAGAACAAATACACGATGAAGATCAAGAGCTGCGGCAACGGGCTCGCCGACGATGGATACAAGTGGAGGAAATACGGC
CAGAAAGCCATCAAGAACAGCCCCAACCCAAGGTACTA-------TTTACAGTTTCACTTTCACCCTATATCAACCTATC
TCTCATGGCCGACATGACTTTTAATTACTT--------------------------------------------------
-------------------------------------------------------GTAGTTCTTAGCCATGGTAGCTAGC
AGGCAATTTTGCAAGCAATTTTACTTACAGTGGCATAATCACCATGGTGCAACATCCAGTTGACATATGAGAGACAGCGT
G----TATATATTTATCTGTTCACTCTTCAAACATGGGTGTGTGAAAGGCACATGACATCGCAGCTAGCTAGTAGCCCAA
ATGAGACAAACTCCAAGCTTTGGAGCAATTACTTTTGTGAACCAAATGGAGGAAGAGCAAGCTAGCTATGCACTGTCCAT
ACTTAATTCCACAACAAAAAATTCCCATGACAG-AGCAATAATCCTCCACAGCTTGCATGCCACAATCCGTATATAGCTA
GTCATGGGCAAAGTTAATCGCTGCATGCAAGTAAG-------GGGTTTGCAGAGGTGGAGTAGCTGAGTTGGTAGGTGTG
TGTGCTTGCAGATGGAATATTTATTAATTGCAACCTTAAATACTTAGACCCCACAATTTGCCATGGCACGGTTGAGCTAG
CTACCTAGAGCTGTCTCCATGAAAACAACCGGCTAATTTGGCAAGAAAACGACAGTGGAAT---GTGTAGTTTTTGTAAA
TTCTTTTTTTAATAGTTTTTGAAAATTTCAGTCACCTAAATTGCACGCTACTATTG-----ATTATTATAGTGAATTAGT
GTATAGCAATATGTAACTTT----TC---ATTTGGTTAATTTTGGCGG--------TGGTAATAACTAAATTGACGTGGA
CGTGGCAGGAGTTACTACCGGTGCACGAACCCGCGGTGCAACGCGAAGAAGCAGGTGGAGCGCGCCGTCGACGAGCCGGA
CACGCTCGTCGTCACCTACGAAGGCCTCCACCTCCACTACACCTACTCCCACTTCCTCCAGCAGCAGACCAGCCCTCCAC
CCGCTGCCGCCACCATTGCC---TCAAGCTCCAAGAAGCCCAAGCTGCACCCCGCCGCCGGCGCCATTACAGTCACAGAC
TCCCACCACGAGAGCACCCCTGTGACAACAACCTCGCCGCTCTCTGCCGCCGTCGTCCCTGCCGGCGCCGGAGACAGCAG
CGGCGACAGCGGCGGTAACGTGACAGCCGACGCGGGCTTCCTGCTGGAGCACGCGGTGCCCAACTGCTCGGCGTATCTGT
TCGACGGCGGCTTGTTCAGTGATGCAGGCGTGGAGCGGCGGATGCCCAGCGACGCCGGAGGGCTCCTGGAGGACATGGTG
CCGCTGATGGTCCGTAGGCCGTCTTGCAACTCGGCGGCCACCACCGCCAGCTCGTCGACAACGGTCGGCTCGCCCGCCGC
GATTGTGTCGTCGCCGTCGCCCTCCACATCGTCCGTGTCCTGGACCCCCGCGTCGCCGTACATCGACATGGCCATCCTCT
CCAACATCTTCTAGCTAGTAGCGTAGTGTCAATTTGTCCATCACGATGATCGA---------------------------
---ATTGTTTGTGCTTGTGCATCCAAGCGTGCAAGATGCACGTACGCACGAAGGGTGCGTGATTATTAGTAGTACTAT--
-TATTATACCAGCTACTACTAGTA---GCATCTAGCTAAGATAGCTGTGGCTTACTCCCAAAATAAGGAGGATGTGTA--
TGTGTTGTGTGAGTATAGTATGATTGT--TATTAGTATAGGTA-----CCGGTGGATGTTGAATGAATAATTGTGTGCAA
GATGTGAGTAATACTCATACTTATGGTGTGCAAGGATGGCAGATGTAGTATATGTGTGTAGCAAATATAATTGTGAGAGA
AGCTTGTGGGATATGTAGTCTGTTAACTTTTCTCTGGGCATGAGTTTCTCCTCTTCAGGGGCACAATTGACCATGTTATT
CGGTTATT-TTTTGTACAGCTATTTTTGGATGAAATTACTATCAATACTTTTTTTTTGCAGCGGTGAATTTGGCCCATGG
TACCATTTTGTAGGGGATAGCCCAAGATAACTTGTTTGGGCATTAAGTTAGCGCCCATAGCAACTATATAGTGCAAATGC
TCGATCTCGCTTACTGCAAGACCGTAGCTTATTCTTTTT--TTAAGCAAGACTATAGCTAGTGTCACCTCAAGCGACCGA
CAAAATGGCCCGACCCAATAGGTGTGATACGAGCGGTTTTGCGAAGCTTCTGAGGACCAGTTCGTGAAACCTTCCATCAT
GTCACTTAAAAAGCACCTTA------------------------------------------------------------
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-----------------------------------------------------------------------
>chr3A_1_TraesCS3A01G527300
GATTAGGTGCAAGAGCGGCTTTGCATTTGCTGCTCACTTGAGTGTGGTGGTTGCTGTGTGGATAGAGACCCTTATCCAGG
CCCCCTAATCTCTCAAGTTTAGGACCTTGTTTTATGGGCACTGCCCTTGTTAGGCAGGGCAGTTCAAATAGAACCCTCCC
TGCACCACAACCTTTTATAGTTATAGTACACAATC----TAAAATTTAATGGATTTTTGTTAAAGCTAGGT-----AGCC
TCACTTTTGTGCTTTGCTTCTACAATGTTCCAAATAAAATAATCAGTAGTAGCATTACATAAATTTGCCACTGAAACATA
ATTAAGTCACTACAC------------ATGATTTTAATCTTTCAAGTATTCACCTAAATATCGAGTGCTTTAAAAAATGG
GTTAATTGAATAAATGCCACTCGAATTCTGGTTATTCCGAGAAATGCCACTGCAATTTCCGAAAAACGACACGATGGGGC
AGT-TTTCAGTTGAAACGAACTATAGATGGGCAGTACATTAAACATACTGTAGTCCCCTTAGTTCTCTGATGATTTGGTA
GGATATGTAGAATAACTAACTAATGTTGACTC-GACTTGGGGGAAAGTTGTGCATACATATATGCACCGGTCCAATCATA
TGTACAAAAAGCGCGCTTTAGTGGTTGACAATTGCATTTGTTACATACTTTGGGTCAGTTGGTTCGATCCTCGATTGTTC
TTTGTCAATAATATATGTACTTAGTGTCA----------------------------GTGTGTGCCTTAATATAAACAT-
---TCATGGTGGACATATCTCTTGCACCGTCCAATTACAAGTTAAACCAACCCCCTCATTAGGTTGATTGGTAAAGGGGC
TACCAAATCAAAGGGTGTACCTGCTACTACTACTATTTGATCCTTC----AGCTAGCTT---------------------
------------------GCAGAAGTAAGTAGTACCACT------GTAGTAACTATAGCTAGGGTGAATATATAATCTAT
---GGTGTAGTAAGTAGTCAACACCCGAGGGCATACTTGTCATTTCTCCATGGGGTGGAAAGTCCCCTTATATATACCCT
GCAATGGCAGGGACTGAGTTGGTGCAATCAAAAGTCGCCAGCAACCATCTCTTCTTGCTTCATTCGGTCTCTAGGCGGCT
AGCCATTACGACAACACATCCCAGATATAGTCAGTAGTACTAGCTAGCAAGCAAGATAC---TAGCCAGGTGTTGTCCAT
GGAGGAGATGGGGGAGGAGAGCAGCAGGTATCCATGGCAGGACTACGACATCGGCTTCGGGGAGGAGCTCATGAGGGAGC
TCCTTGACGAGACGACGACGGCGCCATCTCTAGCAGCAACACCAACGGCGCCCGGCGCCGTGAGCGCTGACAATTCTTCT
TCTTCCGATAAGGGAATTGGTGACGAGGAGGAAGGGGCGGCGGGGCGCCGGGAGTCCATGGTGAACAGGCTCATGTCGAC
GGTCTACTCCGGGCCCACCCTCAGCGACATAGAGAGCGCCCTCTCCTTCACCGGCGCTGGCGCCGGCGACCCGCTGGACG
GCCGCAGCAAGTACCACTACAGCCCCTCCAGCCCAGTGTACGTCCCTCATATCTATGCCAAGAACAACCATCTATGTACA
ATTCTCCGTAGATTCAAGCTCAGTTTGGACATCTGTATGGAAACTCAGGGTTTTCTCGCCGGAGAAGGTGCTGGGCAAGA
TGGAGAACAAATACACGATGAAGATCAAGAGCTGCGGCAACGGGCTCGCCGACGATGGATACAAGTGGAGGAAATACGGC
CAGAAAGCCATCAAGAACAGCCCCAACCCAAGGTACTA-------TTTACAGTTTCACTTTCACCCTATATCAACCTATC
TCTCATGGCCGACATGACTTTTAATTACTT--------------------------------------------------
-------------------------------------------------------GTAGTTCTTAGCCATGGTAGCTAGC
AGGCAATTTTGCAAGCAATTTTACTTACAGTGGCATAATCACCATGGTGCAACATCCAGTTGACATATGAGAGACAGCGT
G----TATATATTTATCTGTTCACTCTTCAAACATGGGTGTGTGAAAGGCACATGACATCGCAGCTAGCTAGTAGCCCAA
ATGAGACAAACTCCAAGCTTTGGAGCAATTACTTTTGTGAACCAAATGGAGGAAGAGCAAGCTAGCTATGCACTGTCCAT
ACTTAATTCCACAACAAAAAATTCCCATGACAG-AGCAATAATCCTCCACAGCTTGCATGCCACAATCCGTATATAGCTA
GTCATGGGCAAAGTTAATCGCTGCATGCAAGTAAG-------GGGTTTGCAGAGGTGGAGTAGCTGAGTTGGTAGGTGTG
TGTGCTTGCAGATGGAATATTTATTAATTGCAACCTTAAATACTTAGACCCCACAATTTGCCATGGCACGGTTGAGCTAG
CTACCTAGAGCTGTCTCCATGAAAACAACCGGCTAATTTGGCAAGAAAACGACAGTGGAAT---GTGTAGTTTTTGTAAA
TTCTTTTTTTAATAGTTTTTGAAAATTTCAGTCACCTAAATTGCACGCTACTATTG-----ATTATTATAGTGAATTAGT
GTATAGCAATATGTAACTTT----TC---ATTTGGTTAATTTTGGCGG--------TGGTAATAACTAAATTGACGTGGA
CGTGGCAGGAGTTACTACCGGTGCACGAACCCGCGGTGCAACGCGAAGAAGCAGGTGGAGCGCGCCGTCGACGAGCCGGA
CACGCTCGTCGTCACCTACGAAGGCCTCCACCTCCACTACACCTACTCCCACTTCCTCCAGCAGCAGACCAGCCCTCCAC
CCGCTGCCGCCACCATTGCC---TCAAGCTCCAAGAAGCCCAAGCTGCACCCCGCCGCCGGCGCCATTACAGTCACAGAC
TCCCACCACGAGAGCACCCCTGTGACAACAACCTCGCCGCTCTCTGCCGCCGTCGTCCCTGCCGGCGCCGGAGACAGCAG
CGGCGACAGCGGCGGTAACGTGACAGCCGACGCGGGCTTCCTGCTGGAGCACGCGGTGCCCAACTGCTCGGCGTATCTGT
TCGACGGCGGCTTGTTCAGTGATGCAGGCGTGGAGCGGCGGATGCCCAGCGACGCCGGAGGGCTCCTGGAGGACATGGTG
CCGCTGATGGTCCGTAGGCCGTCTTGCAACTCGGCGGCCACCACCGCCAGCTCGTCGACAACGGTCGGCTCGCCCGCCGC
GATTGTGTCGTCGCCGTCGCCCTCCACATCGTCCGTGTCCTGGACCCCCGCGTCGCCGTACATCGACATGGCCATCCTCT
CCAACATCTTCTAGCTAGTAGCGTAGTGTCAATTTGTCCATCACGATGATCGA---------------------------
---ATTGTTTGTGCTTGTGCATCCAAGCGTGCAAGATGCACGTACGCACGAAGGGTGCGTGATTATTAGTAGTACTAT--
-TATTATACCAGCTACTACTAGTA---GCATCTAGCTAAGATAGCTGTGGCTTACTCCCAAAATAAGGAGGATGTGTA--
TGTGTTGTGTGAGTATAGTATGATTGT--TATTAGTATAGGTA-----CCGGTGGATGTTGAATGAATAATTGTGTGCAA
GATGTGAGTAATACTCATACTTATGGTGTGCAAGGATGGCAGATGTAGTATATGTGTGTAGCAAATATAATTGTGAGAGA
AGCTTGTGGGATATGTAGTCTGTTAACTTTTCTCTGGGCATGAGTTTCTCCTCTTCAGGGGCACAATTGACCATGTTATT
CGGTTATT-TTTTGTACAGCTATTTTTGGATGAAATTACTATCAATACTTTTTTTTTGCAGCGGTGAATTTGGCCCATGG
TACCATTTTGTAGGGGATAGCCCAAGATAACTTGTTTGGGCATTAAGTTAGCGCCCATAGCAACTATATAGTGCAAATGC
TCGATCTCGCTTACTGCAAGACCGTAGCTTATTCTTTTT--TTAAGCAAGACTATAGCTAGTGTCACCTCAAGCGACCGA
CAAAATGGCCCGACCCAATAGGTGTGATACGAGCGGTTTTGCGAAGCTTCTGAGGACCAGTTCGTGAAACCTTCCATCAT
GTCACTTAAAAAGCACCTTATTAAATGGGGAAGGAATTGAGAAATGTGAAGGCTCTGATGACCCATTCATTTCGATTTAG
GTATTTCTGTACCATACATATTTGGATCTTTCCTCCATATCTGTTGAGTGTGAGCCTAGGTTGATATCGTTGAGTTGGAT
TAGTCCTACCTGGATTAGTCCTACCTTAATCTATCATGTCCTGCAACCACTCCAATCTCAATCTTCTGATCGGTTTTGGG
AAGGTTCCACGCTGGTTTCTTCTTCTTTCTTTTATGTGTTTTTCTTTATGTTTTTTTTCATGTTTGC-CTTTTCTTTTCT
TTTTCATCTTTTAAAATACATGTTGACCTTTCTAATACACATTGGACATTTTTCGTCTATAGATCGAAGATTTTTTAAAT
ACAAGTTCAATATTTATCTGAATACATGTTAAAAATTTAAAAATGTACATGAAGTATTTTCAATACATAGTAAACATTTT
CTAAACACAAGTTGAACATTTCTTTAAATTGCATGAACACATTTTTACACTGTCATGAAGTTTTTACAAAAG-AAAAATC
AAGAAACATATTTTTAAACGAGTGAACAATTTTTAAAGGGTACAAACA-TATGTACAGACTACATGACAGAT-TTTTACA
TTTTCTTGACTATGTTTTAAAGTACCATCAACAAATCTTTAAACTTGTGAACATTTTATAAATGTCACGAACAACTTTTG
ATTGGTACAAACTGTTTACAAAGAGATCAAAAGTTTTACACTCCCTGGACATTTTTTGAATGCTTGATGAACTGTTTTGA
AACTTAAGTT-AATGTGTTCAATTTCATAAATATAAAGAAAAGTAACAAAA---AACAAATAATAAAGGAACTAAAGGGC
TGTTTGGATTGTGATTATCTTTGTCATATTTTGCCACA------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CCTAAGTTGGTCAAACTTGCCTAAGGTGAGGTGTGGTAAAGTGTG
GCTAAGTTGGTCAAAC------ACTATTATTGGCGAGGCAGACGTCCTTCTCTCTATGAGGAAGATCCAGA
>chr3D_1
GATTAGGTGCAAGAGCGGCTTTGCATTTGCTGCTCACTTGAGTGTGGTGGTTGCTGTGTGGATAGAGACCCTTATCCAGG
CCCCCTAATCTCTCAAGTTTAGGGCCTTGTTTTATGGGCACTGCCCTTGTTAGGCAGGGCAGTTCAAGTAGAACCCTCTC
AGCACCACAACCTTTTATAGTTAGTACACA----CACTCTAAAATTTAATGGATATCGCCTAAAGTTCAGCTGGCGAGCC
ACACTTTTGTGCTTTGCTTCTACAATGTTCCAAATGAAATAATTAGTAGTAGCATTACATGAATTTGCCACTGAAACCTA
GTTAATTATGTAAGTCACTGTACATATATAATTTTAACCTCTCAATTATTCACCAACAAATTGAGTGCTTTAAAAAATA-
-------------------------------------------------------------------GACACGATGGCGC
AGTCTTTCAGTTGGAACGAACTCTAGATGGGCAGTAGATTAACCATACTCTGGTGCCCTTAGTTCTATGATGATTTGGTA
GGATATGTAGAATAGTTAACTAATGTTGACTCTGACTTGGGGGAAAGTTGTGCATACATATATGCACTGGTTCAATCATA
TGTACAAAAAGCGCGCTTTAGTGGTTGACAATTGCATTTGTTACATACTTTGGGTCAGTTGGTTCGATCCTCGCTTGTTC
TTTGTCAATATTATATAAACTTAATGTCGATTCGC----AAAAAAAAAATTGTGAGTGTGTGTGCCCTAATATAAACAT-
---GCATGGTGGGCATATCTCCTGCACCGTCCATTTCCAAGTTAAACCAACCCCCTCATTAGGTTGATTGGTAAAGGGGT
TATCAAATCAAAGGGCGTACCTGCTACTACTACTATTTGATCCTTC----AGCTAGCTAGCTGTCCAGTTGCACCACTTG
AATTGCATTCCTTGTCCAGCAGAAGTAAGTAGTACTGACACAGGAGTAGTTACCAAAGCTAGGGTGAATATACAATTCTC
CAAGGTGTGGTAATTAGTCAAC-CCCGGGGGCATACTGGTCATTTCTCCATGGGGTGGAAAGTCCCCTTATATATACCCT
GCAATGGCTGGGACTGGGTTGGTGCAATCAAAAGTCGCCAGCAACTATCTCTTCTTGCTTCATTCGGTCTCTAGGCGGCT
AGCCATTACGACAACACACCCCAGATATAGTTAGTAGTACTGGCTAGCAAGCAAGGTAGTAGTAGCCAGGTGTTGTCCAT
GGAGGAGATGGGGGAGGAGAGCAGCAGGTATCCATGGCAGGACTACGACCTGGGCTTCGGGGAGGAGCTCATGAGGGAGC
TCCTCGACCAGACGACGACGGCG------CCATCGGCAACACCAACGGCGGCCGGCGCCGCAAGCGCTGATAATTCTTCT
TCTTCCGACAAGGGGATTGGTGACGAGGAGGAAGGGGCGGTGGGACGCCGGGAGTCCATGGTGAACAGGCTCATGTCGAC
GGTCTACTCCGGGCCCACCCTCAGCGACATCGAGAGCGCCCTCTCCTTCACCGGCGCCGGCGCTGGCGACCTGCTGGACG
GCCGCAGCAAGTACCACTACAGCCCCTCCAGCCCAGTGTACGTCCCTCATATCTATGCCAAGAAAAACCATGTACGTACA
ATTCTCCGTAGATGCAAGCTCAATTTGGACATCTGTGTGGAAACTCAGGGTTTTCTCGCCGGAGAAGGTGCTGGGCAAGA
TGGAGAACAAGTACACGATGAAGATCAAGAGCTGCGGCAACGGGCTCGCCGACGATGGGTACAAGTGGAGGAAATACGGC
CAGAAAGCCATCAAGAACAGCCCCAACCCAAGGTACTA-------TTTACAGTTTCAC------CCTATATCAACCTATC
TCCCATGGCCGACATGGCTTTTAATTACTT--------------------------------------------------
-------------------------------------------------------GTAGTTCTTAGCCATGGTAGCTAGC
AGGCAATTTTGCAAGCAATTTTACTTACAGTAGCATAATCACCATGGTGCAACTTGCAGTTGACATATGAAAGACAGCGT
GTGTATATATATTTATCTGTTCACTTTTCAAACATGGGTGGGTGAAAGGTACATGACATCGCAGCTAGCTAGTAGCCCAA
ATGGGACAAACTCCAAGCTTTGGAGTAATTACTTTTGTGAACCAAACAGAGGAAGAGCAAGCTAGCTATGCACTGTCCTC
ACTTAATTCCACAACCAAAAATTCCCATGACAGCAGCAATAATCCTCCACAGCTTGCATGCCACAGTCCGTATA----TA
GCCATGGACAAAGTTAATCGTTGCATGCAAGTAAGTGAGGA---GTTTGCGGAGGTGGAGTAGCTGAGTAGGTAGGTGTG
TGTGCTTGCAGATGGAATATTTATTAATTGCAACCTTAAATACTTAGACCCCACAATTTGCCATGGCACGGTCGACCTAG
CTACCTAGAGCTGTCTCCATGAAAACAACCGGCTAATTTGGCATGAAAACGATAGTGGAGCATGGTATAATTTCTGTAAA
TTCTTTTTAAAAAAATTCAGTC---------------AAATTGCACACT----------CTATTATTATAGTGATTTTTT
GTAAGGTAGCATGTAACTAGTAAATTTTTATTGGATAAATTTTGGTGGTGGTAAAACGGTAATAACTAAATTGACGTGAA
CGTGGCAGGAGTTACTACCGGTGCACGAACCCGCGGTGCAACGCGAAGAAGCAGGTGGAGCGCGCCGTCGACGAGCCGGA
CACGCTCGTCGTCACCTACGAAGGCCTCCACCTCCACTACACCTACTCCCACTTCCTCCAGCAGCAGACCACCCCTCCAC
CCGCCGCCGCCGCC---GCC---TCAAGCTCCAAGAAGCCCAAGTTGCACCCCGCCGCCGGCGCCA------TTACAGAC
TCCCACCACGGGAGCACCCCTGTGGCAACAACCTCGCCGCCCTCTGCGGCCGTCGTCCCTGCCGGCGCCGGGGACAGCAG
CGGCGACAGCGGCGGTAACGTGATAGCCGACGCGGGCTTCCTGCTGGAGCACGCGGTGCCCAACTGCTCGCCGTATGTGT
TCGACGGCGGATTGTTCGGTGAGGCCGGCGAGGAGCGGCGGATGACGAGCGACGCCGGCGGGCTCCTGGAGGACATGGTG
CCACTGATGGTCCGGCGGCCGTCGTGCAACTCGGCGGCCACCACCGCCAGCTCGTCCACGACGGTCGGCTCGCCCGCGGC
GCCGGTGTCGTCGCCCTCCCCCTCCACGTCGTCCGTGTCCTGGACCCCCGCGTCGCCGTACATCGACATGGCCATCCTCT
CCAACATCTTCTAGCCAGTAGCGTAGTGTCAATTGGTCCATCACGATGATCGATCGGGAACAATTAGGCTCGAGGAAAAT
CGAATTGTTTGTGCT--TGCATCCAAGCGTGCAAGATGCACGTACGCACGAAGGGTGTGTG---ATTAGTAGTACTAT--
-TATTATACCAGCTACTACTAGTACTAGCATCTAGCTAAGATAGTTGTGGCTTACTCCCAAAATAAGGAGGATTTGTA--
TGTGTTGTGTGAGTATAGTATGATTAGTATATTAGTATAGGTA-----CCGGTGGATGTTGAATGAATAATTGTGTGCAT
GATGTGAGTAATACTCATACTTATGGTGTGCATGGATGGCAGATGTA---TATGTGCGTAGCAAATATAATTGTCAGTGA
AAATGGTGAGATATGTAGTGTGTTAACTTTTCTCTGGACATGAGTTTCTCCTCTTCAGGGGCACAATTGACCATCTTGTT
CAGTTATTATTTTTTAAAGCTATTTTTGAATGAAATTACTATAAGTACTTTTTTTTTGCAGCGGTGAATTTGGCCCATGG
TACCATTTTGCAGGGGATAGCCCAAGATATCTTGTTTGGGCATTAAGTTAGCGCCCATAGCAACTATATAGTGCAAATGC
TAGATCTCACTTACTGCAAGATCGTAGCTTATTCTTTTTTGTTAAGCAAGACCATAGCTAGTGTCACCTCAAGCGACCGA
CAAAATGGCCCGGCCCAATAGGTGTGATACGAGCGGTTTTGTGAAGCTTCTGAGGACCAGTTCGTGAAACCTTCCATCAT
GTCACTTAAAAAGCAACTTATTAAATGGGGAAGGAATTCAGAAATGTGAAGGCTCTGATGACCCATTCATTTTGATTTAG
GTATTTCTGTACCATACATATTTGGATCTTTCCTCCATATCTGTTGTGTGTGAATCTAGGTTGATATCATTGAGTTGGAT
TAGTCCTACCTTAACT---------------TATCATGTCCTGCAACCACTCCAATCTCAATCTTCTGATTGGTTTTGGG
AAGGTTCCACGCTCGTTTTTTCTTCTTTCTT--------------TTATGGATTTTTTCATTCTTTGTCTTTTCTTTTCT
TTTTCCTCTTTCAAAATACATGTTGACCTTT-TAATACACATTGAACATTTTTCGTCTATAGATCGAAGATTTTTTAAAT
ACAAGTTGAACATTTATATGAATACATGTTAAT-ATTTAAAAATTTACATCAAATATTTTCAATACACAGTAAACATTTT
CTAAACACAAGTTGAACATTTTTTAAAATTGCATGAACACATTTTTACATTGTCATGAACTTTTACAACAGAAAAAAATC
AAGAAACATATTTTTAAACGAGTGAACAATTTTTAAAAGGTACAAACATTATGTACAGACTACATGACAATTGTTTTACA
TTTTCTTGACTATTTTTTATAATAAGATCAACAAATCTTTAAACTTGTGAA------ATAAATCTCACGAACAACTTTTG
ATTGGTACAAACGTTTTATAAAGATATCAAAAGCTTTACATTCCATGAACATTTTTTGAATGCCTGATGAAATGTTTTGA
AACTTAAGTTAAATGTGTTCCATTTCATAAATATAAAGAAAAGTAACAAAACAAAACAAATAATGAAGGAGTTAAGGGGC
TGTTTGGATTGCGACTATCTTTGCCATATATTGCCACATTGTTTTTGCCACACTTGTCTTACCTGAGTTGACAAATTGTT
AGCCACACTTTGGCTTGCCTAAGGGAATCTTGCCATATTTTTGTGTGCCTATGACATGTGGGGTTTACTGCTCATAAAAA
AACTTGCCTTAGGTGTGGCTAGAACCAAACACCCACCTAAATTGGTCAAACTTGCCTAAGGTGAGGTGTGGCAAAGGGTG
GCTAGGAACCAAACAACCCCTAACTATTATTGGCGAGGCAGACGTCCTTCTCTCTATGAGCAAGATCTAGA
>chr3B_1
GATTAGGTGCAAGAGCGGCTTTGCATTTGCTGCTCACTTGAGTGTGGTGGTTGCTGTGTGGATAGAGACCCTTATCCAGG
CCCCCTAATCTCTCAAGTTTAGGGCCTTGTTTTATGGGCACTGCCCTTGTTAGGCAGGGCAGTTCAAGTAGAGCCCTCCC
TGCACCACAACCTTTTATAGTTAGTACACA----C----TATAATTTAATGGATTTTTGTTGAAGCTAGCT-----AGCC
TCACTTTTGTGCTTTGCTTCTACAATGTTCCAAATGAAATAATCAGTAGTAGCATTACATGAATTTGCTACTGAAACATA
ATTAAGTCACTACAA------------ATGATTTTAACCTTTCAAGTATTCACCTCAAAATTGAGTGCTTTAAAAAAAT-
-----------------------------------------------------------------ACGACACGATGGGGC
AGTCTTTCAGTTGGAACGAACTCTAGATGGGCAGTAGATTGAACATACTCTGGTGCCCTTAGTTCTCTGATGATTTGGTA
GGATATGTAGAATAGTTAACTAATGTTGACTC-GACTTGGGGGGAAGTTGTGCATAAATATATGCACTGGTTCAATCATA
TGTACAAAAAGCGCGCTTTAGTGGTTGACAATTGCATTTGTTACGTACTTTGCGTCAGTTGGTTTGATCCTCAATTGTTC
TTTGTCAACATTATATAAACTTAACGTGGATTCGAAAAGAAAAAAATTAATGTGAGTGTGCGTGCCCTAACATAAACATG
CATGCATGGTGGGCATATCTCCTGCACCGTCCAATTCCAAGTTAAACCAACCCCCTCATTAGGTTGATTGGTAAAGGGGT
TATCAAATCAAAGGGTGTACCTGCTACTACTACTATTTGATCCTTGAGCTAGCTAGCTAGCTGTC-------ACCACTTG
AATTGCATTCCTTGTCCAGCAGAAGTAAGTAGTGCCAACACTGGAGTAGTTACCATAGCCAGGGTGAATATACAATTCCC
CAAGGTGTGGTAATTAGTCAAC-CCCCGGGGCATACTGGTCATTTCTCCATGGGGTGGAAAGTCCCCTTATATATACCCT
GCAATGGCAGGGACTGGGTTGGTGCAATCAAAAGTCGCCAGCAACTATCTCTTCTTGCTTCATTCGGTCTCTAGGCGGCT
AGCCATTACGACAACACACCCCAGATATAGTTAGTAGTGCTGGCTAGCAAGCAAGGTACTAGCAGCCAGGTGTTGTCCAT
GGAGGAGATGGGGGAGGAGAGCAGCAGGTATCCATGGCAGGACTACGACCTGGGCTTCGGGGAGGAGCTCATGAGGGAGC
TCCTCGACCAGACGACGACGGCGCCAACGCCATCGCCAGCAGCAATGGCGGCCGGCGCCGCGAGCGCTGATAACTCTTCT
TCTTCCGATAAGGGGATCGGTGACGAGGAGGAAGGGGCGGCGGGGCGCCGGGAGTCCATGGAAAACAGGCTCATGTCGAC
GGTCTACTCCGGGCCCACCCTCAGCGACATCGAGAGCGCCCTCTCCTTCACCGGCGCCGGCGCCGGCGACCCGCTGGACG
GCCGCAGCAAGTACCACTACAGCCCCTCCAGCCCAGTGTACGTCCCTCGTATCTATGCCAACAACAACCATA----TACA
ATTCTCCGTAGATGCAAGCTCAATTTGGACATCTGTGTGGAAATTCAGGGTTTTCTCGCCGGAGAAGGTGCTGGGCAAGA
TGGAGAACAAGTACACGATGAAGATCAAGAGCTGCGGCAACGGGCTCGCCGACGATGGGTACAAGTGGAGGAAATACGGC
CAGAAAGCCATCAAGAACAGCCCCAACCCAAGGTAGTACTATTTCTTTACAGTTTCAC------CCCATATCAACCAATC
TCTCATGGCCGACATAACTTTTAATCACTTGTACTCCCTCCGTTCGGAATTACTTGTCTCGAGAATGGATGTATCTAGAA
CTAAAATACATTTAAATACATCTATTTTTGCGACAAGTAATTCCGAACGGAGGGAGTAGTTCTTAGCCATGGTAGCTAGC
AGGCAATTTTGCAAGCAATTTTACTTACATAACCATAATCACCATGGTGCAACTTCCGGTTGACATATGAGAGACAGAGC
----ATATATATTTATCTGTTCACTTTTCAAACATGGGTGGGTGAAAGCTACATGACATCGCAGCTAGCTAGTGGCCCAA
ATGGGACAAACTCCAAGCTTTGGAGCAATTACTTTTGTGAACCAAACAGAGGAAGAGCAAGCTAGCTATGCACTGTCCTC
ACTTAATTCCACAACCAAAAATCCCCATGACAGCAGCAATAATCCTCCACAGCTTGCATGCCACAGTCCGTATA----TA
GCCATGGACAAAGTTAATCGTTGCATGCAAGTAAGTAGTAAGGGGTTTGCAGAGGTGGAGTAGCTGAGCAGGTAGGTGTG
TGTGCTTGCAGATGGAATATTTATTAATTGCAACCTTAAATACTTAGACCCCACAATTTGCCATGGTACGGTCGAGCTAG
CTACCTAGAGCTGTCTCCATGAACACAACCGGCTAATTTGGCAAGAAAGCGATAGTGGAGCATAGTATAATTTCTTTAAA
AAAAAAA------------TGTAAATTCCAGTCACCTAAATTGCTCAAATGCACACTTACTATTATTATAGTGAATTAGT
GTAAGGTAGCATGTAAATAT----TTTGTACTGGATGAATTTTGGTGGTGGTAAATTGGTAATAACTAAATTGACGTGGA
TGTGGCAGGAGTTACTACCGTTGCACGAACCCGCGGTGCAACGCGAAGAAGCAGGTGGAGCGCGCCGTCGACGAGCCGGA
CACGCTCGTCGTCACCTACGAAGGCCTCCACCTCCACTACACCTACTCCCACTTCCTCCAGCAGCAGACCAACCCTCCAC
CCGCCGCCGCCGCC---GCCGCCTCAAGCTCCAAGAAGCCCAAGCTGCACCCCACCGCCGGCGCCATTACAGTTACAGAC
TCCCACCACGGGAGCACCCCTGTGCCAACAACCTCGCCCCCGTCTGCCGCCGTCGTGCCTGCCGGCGCCGGGGACAGCAG
CGGCGACAGCGGCGGTAACGTGACAGCCGACGCGGGCTTCCTGCTGGAGCACGCGGTGCCCAACTGCTCGCCGTATCTCT
TCGACGGCGGCTTGCTTAGTGATGCCGGCGAGGAGCGGCGGATGCCGAGCGACGCCGGCGGGCTCCTGGAGGACATGGTG
CCGCTGATGGTCCGGCGGCCGTCGTGCAACTCGGCGGCCACCACCGCCAGCTCGTCGACGACGCTCGGCTCGCCCCCGGC
ACCGATGTCCTCGCCTTCTCCCTCCACGTCGTCCGTGTCCTGGACCCCCGCGTCGCCATACATCGACATGGCCGTCCTCT
CCAACATCTTCTAGCCAGTAGCGTAGTGTCAATTGGTCCATCACGATGATCGATCGGGAGCAATTTGGCTCCAGGAAAAT
CGGATTATCTGTGCTTGTGCATGCAAGCGTGCAAGATGCG----CGCAGGAATGGTGTGTGATTAGTAGTAGTAGTAGTA
CTATTATACTAGCTACAAGTAGTA---GCATCTAGCTAAGATAGTTGTGGCTTACTCCCAAAATAAGGAGGATTTGTATG
TGTGTTGTGTGAGTATAGTATGATCGT--TATTAGTATAGGTAAGGTACCGGTTGATGTTGAATGAATAATTGTGTGCAT
GATGTGAGTAATACTCATCCTTATGGTGTGCATGGGTGGCAGATGTA---TATGTGAGTGAAG-----------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
-----------------------S-------------------------------------------S------------
-----------------------SSSS---SSSS----------------------------------------------
-----------------------------------S------------------------S-------------------
--------------S----------------------S--------------------S--S----------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-------------S--------S-------------S------------S-S--S-------------------------
--------------SS---------------------------------------------------S---S--------
--------------------------------------------------------------------------------
----------S-----SS-----S----S-------------------------------------S-------------
---S--------S--------S--------------S------------------------------------------S
--S-------------------------------------------------------S---------------------
-------------------------------------SS-----------S--S------------------S---SSSS
--------S----S--------S----S---------S------------------------------------------
----------------S----------------------------S----------------------------------
------------------S------------S---------S-------------S------------------------
-------------------------------------------------S-S----------------------------
----S---S-----------------S-S-S-S-S---------------S---------S---------S---------
--------------S-----------------------------------------------------------------
------------------------------S--------------------------S----------------------
-----------------------------------------------------------------------S--S-----
-------------S--------S-------------S-------------------------------------------
----------S-----------------------------------------------S---------------------
----------------------------------------------------------SSSSSS----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---------------------S--------------------------
-------------------------S--------------S--------S------------------------------
---S------------------------------------------SS------------------------------SS
---------------S-------------------------------------------------S--------SSSS--
-S-----S------------S------------------------------------------------S----------
------------------------------------------------------------------------S-------
----------------------------------------------------S------SS-----S--S---S------
--------SS--S-S--SS--S-----S------------------S--SSS-SSS------------------------
---SS-S-SS--------S------S------S-S-S--------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
----S------S--SSS--------------------------------------------------------S------
----------S-------------S---------------S------------------------------S--------
----------------------------------------------------------------------S---------
-------------------------S----S---------------S-----------S---------------------
--------------SS-------S-----------------------------------S-----------------S--
-SSS-----------S--S--------S----------------------------------------------------
---------------S------------------S---------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------S----------------------------S------
-------------------------------------------------------------------------------S
--------------------------------S--------------SSS------S-----------------S--S--
-SS-S---S----------S-----------------S------------------------------------S--S--
-S-----------S--S-----------S-------------S-S-----------------------------------
----------S------------------S--------------------------------------------------
-S------S------------S------------------------------S---------------------------
------------S----------------------------S--------------------------------------
---------------S----------------------S---------------------------------S-------
----------------------------------------------S------SS-------------S-----------
-----------SS-S-SSSSSSSSSSSSSSS---------------------------------------S---------
-------------S----S------------SSSSSSSSSSSSSS-----SS---------SS--SS-------------
-----S-----S-------------------S------------S-----------------------------------
-------S--S------S--------------SS----------S-----S--S-------------S------------
---------------------S--S------------------------S---------S----SSS-S-SS--------
-------------------------------------S-------------------------------SS---------
-------------S-----S-S--SS-------------------------SSSSSS------S----------------
------------SS----S-----S--------S------S---S--S---------------S-------S--------
--------------------S-------------------------------------------S-----SS---S----
-----------S--S--------S-----S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S------------------------------S----S---
----S-SSSSSS-S-S--------------------------------------------S------S---
>forward_1078
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------------------CAACACCCGAGGGCATACTT------------------------------------------
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>reverse_2972
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-----------ACCATTGCCTCAAGCTCCAA-------------------------------------------------
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>forward_1166
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--------------------------ATCAAAAGTCGCCAGCAACC----------------------------------
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>reverse_2977
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----------------TGCCTCAAGCTCCAAGAAGC--------------------------------------------
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>forward_1330
--------------------------------------------------------------------------------
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------------------------------TCCATGGCAGGACTACGACA------------------------------
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>reverse_3295
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--------------TAGGCCGTCTTGCAACTCG-----------------------------------------------
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>forward_3231
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-----------TTGTTCAGTGATGCAGGCGT-------------------------------------------------
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>reverse_4202
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-----------------------------------------CGAAGCTTCTGAGGACCAGT-------------------
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-----------------------------------------------------------------------
>forward_4011
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----------------------------------------------------------------------TGGCCCATGG
TACCATTTTGT---------------------------------------------------------------------
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>reverse_5150
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-----------------------------TTTGCCACACCTAAGTTGGTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
