>input_sequence_25649
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---------------------------------------------------------------------ATGGTCATGGA
GGTCTCATCCTCGCATGCCTTGCTCTTAGCTTCTCTTCTCCTCCTCCTGTATCTGCTCTCCTCCCGTGGCAAGAACTCTA
GCAATGGCAGC------------ATCCCTAGCCCACCAGCGCTTCCCGTCATCGGCCACCTCCATCTCCTCAAGAAGCCG
CTGCACCGCTCTCTCGCCGCGCTGGCCGTGCGCTATGGCGGCGGCCGGGACGGCGCCGGTCTCCTTCTTCTCCGGTTCGG
CACAAGGCCGGTCCTCCTCGTCTCCTCCCCGCCCATTGCGGAGGAGTGCTTCACCGTCCACGACGTCGCGCTCGCAGATC
GCCCGGGGCTTGCGTCGCGGCGGCTGCTCAGCGGCGATGAGTGCCCCAGCATCGCCGGCGCGAGCTACGGTCCGGTCTGG
CGCCACCTCCGCCGCATCGCTACCGTGCACGCGCTCTCCGCGCACCGCCTTTCGCTGACGACCGCCGCCCGCGATGCCGA
GGTCCGCGCCATGGCGCAGAAGCTCTGGCGAGCCACCCGTCTG------GGCGCCACGGCGGTCAGCGTGAAGCTCGCGG
CGTTCGAGTTTGTTGTCAACGTGATCATGGCCATGGTCGCGGGAAGGCGCATGGCGGAGGACGAGGTCCTCCGGTTCAAG
GCGATGACCGAGGCGGGGTTCGCGGCCGCGGGTGCGGCGAACCGGCACGACTTCTTGCCACTGCTACGGCTGCTGGATTT
TGGAAGGACGAAGAGGAGGCTCGCCGGCCTGGCCAAGGAGCGGCACGAGTTCGGCCAGGGTCTCGTCGACGAATACAGAC
GCCTTCACCACCGTCACGGTGTCGTCGGTGCTGTCACCGAGGACACGCCGTCGACGTCGGCACAGAGAACGGTGATTGGG
GACCTGCTCCGGCAGCAGGAGGGGTCGCCGGAATTGTATGCCGACGTGGTCATCCGCACGATCTGCCTGGTGAGTGAGCG
TTTGCACAGACGAAATAATAGCAAGTGTCAGTATGCATGCATTAGCTAATTATTAGTGTCAATAACTCAGTGTTTCTGAG
CTGTGGTGATGTGATCTACCACTAGAAGCTTAATTTTTTCCTCAAGTCTCAGTTAGTGT--ACTTTCAACTTTGTGCTGC
ACATGTTTACACTACTGGCCACGCAATTAGTTTATGACAACACTGTCTGATGTGTACTACACTGGCCATTTGGTAGTGAC
AATAATTCAATTTCGATTAAT-AAATGTACTGGTAGTGAGATACACGTAGCCAGGTAGCTCAGTTTTTAACAAAGATTTT
ACAAAGCCAAGCCACCGTTTCACTAGTTTACTCGAATGCATTGATGTTAGGCTGGTTTTGAAGAAATTTTCAAGATATTT
TCATCTCAAGATCGTGAATATACTCCCTCCATTTTTATATATAAGGCCACCATCAAAATTACATTTTGCAGCTATACAAG
GTCACTAACATCAATCTAGGTAAAATTGATATGGCTTGCCTTGTACTAGCAACCGAGAACATTAATACCCATTGCATGCA
TGTGGGAGTGAGAAGGTTGGTTTTCATGCACCACATTAATCAACCAATGAAGAATGAGAGGGTTGTCTTGTTGTGGGTTG
AAGAGAAAAATACACATTAATTAACACGTCAAGCAAGGAGAAAAGACTACTCCCTCTCTCTCAGTTTACAGGGCGTGCGC
GTACCCCTAGGTCGTCAATTTGACCAACCTAAGACCAACCACATGGGGAATAACTTCAGCAGTAACATCGAGTCCAACTC
AGTAAATTTGCTTATGTGGCAATGAGTTAATGAGGAAAGAGGGAGTTGTAGTAACTTAGCTAGTTACTGTAACATCACAT
GTTCCAATGTAATATGAGTCTATAACATAATAAATAAAGCTTTGCATGTTACCACACTTATGTTACTACCCACTATGAAG
GTAGTAACATAGTCTAGGATTATGTGTACGTTACTAGTGTATGTTACTCTCCAATGTGGCTAGTCTAATACAAGTCATAT
ATTACAAAAAATATATGACATTGGCCTAATACAAGCCAAGCCACCGTTTCACTAGTAGTAGTTTGCGACATTGGCCTAAG
TAGGCATTATTTTTTACCTTGGTATCTGTAATATGGGTTTGTGGATTTGTATACAAGAATGGAGGGAGTAACAATGTTAA
CCAGCCACAAACTTTCTGAGAATGAAGTTAATACATCACGATAAGAGTCATATACCCGCAGATTGTGATTTGTGACACAT
AGTCACTCACACTTGCCTTGATTGATTGTTCGATCGCTACGTTCATAATTTCGTAAAATTGTGATATTGACAAATCCCTT
TTCAACATATGATTGTGCAGAGCTTGCTTCAAGCCGGGACGGACACGTCATCTAGCACGATCGAGTGGGCAATGGCTCTT
CTACTTAACAATCCACATGTTCTTGCAAAGGCGAAGGAGGAGATCGACGCCGTTGTGGGCACATCCCGGCTGCTCGAGGA
GCACGATCTCGCATGCCTCCCGTACCTTCGTTGCATTATCACCGAGACCCTTCGGATGTACCCTATCGCCCCGCACCTTG
CCCCGCACCAAGCCTCCTCTGATTGCGTCGTTGCTGGCGGGCAATACATCATCGCCTGCGGAACAATGGTGTTAGTTGAT
GTGTACTCCATGCAGCGGGATCCTACCATGTGGGATGAGCCGAACAGGTTCATTCCTGAGAGGTTTGAGGTTGGCATTGG
TGAGGACGGCGACAAACAGGTGGTCAGGATGATGCCATTCGGCATGGGCCGGCGGAAGTGCCCCGGTGAGGGGCTAGCAT
GGAGGACAGTGGGGGTAGCACTTGGGTTGATGGTGCAGTGCTTCAGGTGGGAGCGGATGGGGAAAGAGGAGGTGGACATG
AGCGAGGGGTCAGGGTTCACCATGCCCATGGTTGTGCCACTAGTGGCGATGTGCCAACCCCGTGAAGAAATGGATGAAAT
TCTCAAGAGGATTTAG----------------------------------------------------------------
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--------------------------------------------------------------------
>chr5D_1_TraesCS5D01G084100
GGACTTGGATATATTTTCAAATTTCTGTAAGTGTGTTTTCATAAGGGCATTTGTTACTTAACATAAGGCCGTTGGCCTGT
CCGAAAAAACCGCAAAAAAACACTAGCCCAAAATATTTGCTCCCAAATGAACAGTAAGGTTCGAAAAAAA------TGGC
ATTAAAGATGCTTGAGTTTTCTAGACGCGTGTAATTTTCTTTTTGTCATATGACATTGGGAGACCTCTGGAAAAAAAAAA
TAATGCTCCAAAACCCAAGTTTATGAACCTTTTTCGAAGCTTCGATTTTTTCCACT-----------ATGACATATCGCC
AAAATATTT--CACTCTTTAGAAAATCTCAGCATTTTTGTGCCAATTGTTTTGATTTTGTTTGTTGTTTTTCAGAATTTG
CTGTTCTTCATAGAAGGAGATGAACCCAGGATATGAAACGCCACGCCTCTATATTACATTTTACGGGTTTGCTAATTCTC
ATCTATATGAGAATTAACCAAGTCTCATC-GACTCCTACATCATTTAATTAAACAAG---AAAATAAAAGAAAAATCCCA
CACGAATCTTTATGTAAAA--TTAAATGGTGCAGTAGCTAGATGAGACTTGGTTATTTCACATC----------------
------------------------------------------------AGAGGCACGCCCTACATTTTATTGCCGGAATC
GAGCCACACCAATAGCTATTCAAAATATAATGGAGATAAAATTATAGTTGTTTAATCAGTATGAGTATCACCATTAATGC
CGGATCATGCTAATAGTGACTTCAATTTTTAA--TCTTGACACACACAGATTTCATCTTGTAAAGTCAATGGTGAGT-AA
TAAAAAGTTGTATCATGCAACATGACCAGGGGAC-CCCTTGCTTTGGCCTGGACTGCTATGAAAAGTCGTACTGAATATT
CTCTTAAAAAAATCGTACGGAACATTATGGTGTACGCACAGCAGCCCTCTTAAA-------CACCAACTATTTAGGTTTC
CGTGGCCAGAAAAAGTCTACATAAACACCAAGACATTGTTGAACTTCATGCACCTTTCTC---------ATGGTCATGGA
GGTCTCATCCTCGCATGCCTTGCTCTTAGCTTCTCTTCTCCTCCTCCTGTATCTGCTCTCCTCCCGTGGCAAGAACTCTA
GCAATGGCAGC------------ATCCCTAGCCCACCAGCGCTTCCCGTCATCGGCCACCTCCATCTCCTCAAGAAGCCG
CTGCACCGCTCTCTCGCCGCGCTGGCCGTGCGCTATGGCGGCGGCCGGGACGGCGCCGGTCTCCTTCTTCTCCGGTTCGG
CACAAGGCCGGTCCTCCTCGTCTCCTCCCCGCCCATTGCGGAGGAGTGCTTCACCGTCCACGACGTCGCGCTCGCAGATC
GCCCGGGGCTTGCGTCGCGGCGGCTGCTCAGCGGCGATGAGTGCCCCAGCATCGCCGGCGCGAGCTACGGTCCGGTCTGG
CGCCACCTCCGCCGCATCGCTACCGTGCACGCGCTCTCCGCGCACCGCCTTTCGCTGACGACCGCCGCCCGCGATGCCGA
GGTCCGCGCCATGGCGCAGAAGCTCTGGCGAGCCACCCGTCTG------GGCGCCACGGCGGTCAGCGTGAAGCTCGCGG
CGTTCGAGTTTGTTGTCAACGTGATCATGGCCATGGTCGCGGGAAGGCGCATGGCGGAGGACGAGGTCCTCCGGTTCAAG
GCGATGACCGAGGCGGGGTTCGCGGCCGCGGGTGCGGCGAACCGGCACGACTTCTTGCCACTGCTACGGCTGCTGGATTT
TGGAAGGACGAAGAGGAGGCTCGCCGGCCTGGCCAAGGAGCGGCACGAGTTCGGCCAGGGTCTCGTCGACGAATACAGAC
GCCTTCACCACCGTCACGGTGTCGTCGGTGCTGTCACCGAGGACACGCCGTCGACGTCGGCACAGAGAACGGTGATTGGG
GACCTGCTCCGGCAGCAGGAGGGGTCGCCGGAATTGTATGCCGACGTGGTCATCCGCACGATCTGCCTGGTGAGTGAGCG
TTTGCACAGACGAAATAATAGCAAGTGTCAGTATGCATGCATTAGCTAATTATTAGTGTCAATAACTCAGTGTTTCTGAG
CTGTGGTGATGTGATCTACCACTAGAAGCTTAATTTTTTCCTCAAGTCTCAGTTAGTGT--ACTTTCAACTTTGTGCTGC
ACATGTTTACACTACTGGCCACGCAATTAGTTTATGACAACACTGTCTGATGTGTACTACACTGGCCATTTGGTAGTGAC
AATAATTCAATTTCGATTAAT-AAATGTACTGGTAGTGAGATACACGTAGCCAGGTAGCTCAGTTTTTAACAAAGATTTT
ACAAAGCCAAGCCACCGTTTCACTAGTTTACTCGAATGCATTGATGTTAGGCTGGTTTTGAAGAAATTTTCAAGATATTT
TCATCTCAAGATCGTGAATATACTCCCTCCATTTTTATATATAAGGCCACCATCAAAATTACATTTTGCAGCTATACAAG
GTCACTAACATCAATCTAGGTAAAATTGATATGGCTTGCCTTGTACTAGCAACCGAGAACATTAATACCCATTGCATGCA
TGTGGGAGTGAGAAGGTTGGTTTTCATGCACCACATTAATCAACCAATGAAGAATGAGAGGGTTGTCTTGTTGTGGGTTG
AAGAGAAAAATACACATTAATTAACACGTCAAGCAAGGAGAAAAGACTACTCCCTCTCTCTCAGTTTACAGGGCGTGCGC
GTACCCCTAGGTCGTCAATTTGACCAACCTAAGACCAACCACATGGGGAATAACTTCAGCAGTAACATCGAGTCCAACTC
AGTAAATTTGCTTATGTGGCAATGAGTTAATGAGGAAAGAGGGAGTTGTAGTAACTTAGCTAGTTACTGTAACATCACAT
GTTCCAATGTAATATGAGTCTATAACATAATAAATAAAGCTTTGCATGTTACCACACTTATGTTACTACCCACTATGAAG
GTAGTAACATAGTCTAGGATTATGTGTACGTTACTAGTGTATGTTACTCTCCAATGTGGCTAGTCTAATACAAGTCATAT
ATTACAAAAAATATATGACATTGGCCTAATACAAGCCAAGCCACCGTTTCACTAGTAGTAGTTTGCGACATTGGCCTAAG
TAGGCATTATTTTTTACCTTGGTATCTGTAATATGGGTTTGTGGATTTGTATACAAGAATGGAGGGAGTAACAATGTTAA
CCAGCCACAAACTTTCTGAGAATGAAGTTAATACATCACGATAAGAGTCATATACCCGCAGATTGTGATTTGTGACACAT
AGTCACTCACACTTGCCTTGATTGATTGTTCGATCGCTACGTTCATAATTTCGTAAAATTGTGATATTGACAAATCCCTT
TTCAACATATGATTGTGCAGAGCTTGCTTCAAGCCGGGACGGACACGTCATCTAGCACGATCGAGTGGGCAATGGCTCTT
CTACTTAACAATCCACATGTTCTTGCAAAGGCGAAGGAGGAGATCGACGCCGTTGTGGGCACATCCCGGCTGCTCGAGGA
GCACGATCTCGCATGCCTCCCGTACCTTCGTTGCATTATCACCGAGACCCTTCGGATGTACCCTATCGCCCCGCACCTTG
CCCCGCACCAAGCCTCCTCTGATTGCGTCGTTGCTGGCGGGCAATACATCATCGCCTGCGGAACAATGGTGTTAGTTGAT
GTGTACTCCATGCAGCGGGATCCTACCATGTGGGATGAGCCGAACAGGTTCATTCCTGAGAGGTTTGAGGTTGGCATTGG
TGAGGACGGCGACAAACAGGTGGTCAGGATGATGCCATTCGGCATGGGCCGGCGGAAGTGCCCCGGTGAGGGGCTAGCAT
GGAGGACAGTGGGGGTAGCACTTGGGTTGATGGTGCAGTGCTTCAGGTGGGAGCGGATGGGGAAAGAGGAGGTGGACATG
AGCGAGGGGTCAGGGTTCACCATGCCCATGGTTGTGCCACTAGTGGCGATGTGCCAACCCCGTGAAGAAATGGATGAAAT
TCTCAAGAGGATTTAGAAGTTTGGTCATTCTAGCATTGTACCCTTGCAAGGCCAATCAAAGAAGAAAATACATTTACATC
TGCCACCTTGTCTACGCGCATATTAAATTAGTATGACCATTTCCTAAGAAAAACTAACATTGTTCAAGGCCACCAAACAT
AAGTTACGTATATCTAAGCTCAAAAGCAATTGTAGGATCAAAGAATGTGAACTAGAGGGGGGGGGGGGTTTGTATAGAAG
ATTTAAATTTCTTCAGAAAACACAAATCTCT----------CTGCGAAAAAACAGTAAGCAGATGTAGTTCTACCTGAAG
ATAAACTACTCCTAGAAATAACTTAG-AAGAAAAGATAAGTGCCGGTAGATGAAGAACATGTGAACACACAAACATATCA
TTTTAAGTACAGTGAGGAAAAATATGAAGGATAACATATTAGTCGGTACAGATGGAAATGCTTATCAGATATGAAGAACA
AATCACCAAAGAAGAACACAATGAAGGGCCACTCAATAGAATGTAAGTACTGAAGTAAATATGGTAATTAAGAAAGAAAT
TGTGTTGCTAGATGGCGACAAGATATTTGTTCTACCAGTTCACTCTTCTACAAAAAAAAGCTAGGTCTAGATGGAGGGCC
TTGTAAATGAACACATACGCAAACCTCTCTCCGTCCTATTCTC-TCAACATGAAGTTCCTCGAACTTCAGTTGATTTCAC
TCGTGGTATACTCTTCAAGGCAATCTCCAAACCTTTGCATATTTTGTCTTCAATAAACCACAAAGACTCTTGGTTGCTCA
AGATTGACGCCTACCATCTAGAGAGTGACAGCTCTTGCGAGTAATAGGCCCAAGCTAATTCAACTTAGTTCCCTGTGATG
CTCAACCACTAAGTTTTGGCTCTAGGGTTTTCTCTCAAAGGATTCACTCAAATCTCTCGGAGCAGGGTGCTCAAACAAAC
ACTTGTCAAATTAAACAGAGCACCAAGAAGCAAGGATTGAGAAGGAGCGGCTATTTATAGTCGAAGCA
>chr5A_1
GGACTTGGATATATTTTTAAATTTTTGTAAGTGTGTTTTTATAAGGGCATTTGATACTTAACATAAGGCCGTTGGCCTGT
CCCAAAAAGC--CAAAAAAACAATAGCCCAAAATGTTTGCTCCCAAATGAACAGTAAGGCTTGAAAAAAAGTTTGTTGGC
ATTAAAGATGCTTGAGTTTTGTATATGCGTGTAAAATT-TTGTTGTCATATGACATTGGAGAGCTCTG---AAAAAAAAC
TAATGCTCCAAAACCCAAGTTTACGAATCTTTTTCGAAGCTATGATTTTTTTTACAGAATTCCTCACATGACATATCGCC
AAGATATTGCACACTCTTTAGATAATCTCAGCATTTTTGTGCCA-TTGTTTTCATTTTGTTTGCCGTTTTT-AGAATTTA
CTGTTCATCATAGATGGAGATGAACTCAGGATCTGAAACGCCACGCCTCTATATTACATTTTAAGGGTTTGCTAATTCTC
ATCTAGATGAAAATTAACAAAGTCTCATCTGACTCCTACATTAATTAATTAATTAAACAAAAAATAAAAGAAAAATCCCA
CATGAATCTTCATGTAAAAAATTAAATGATGCAGTAGCTAGACGAGACTTGGTTATTTCACATCTAAACGAGAGGCATGC
CCAATGATGCAGTAGCTAGACGAGACTTGGTTATTTCACATCTAAACGAGAGGCACGCCCTACATTTTAATGCTGGAATC
AAGCCACACCAATAACTATTTAAAATATGATGGAGATAAAATTATAGTCGTTTAATCAGTATCAGTATCACCATTAATGC
CGGATCATGCTAATAGTGACTTCAATTTTTAA--TCTTGACAGACACAGATTTCATCTTGTAAAGTCAATGGTCAGA-AA
TAAAAAGTTGTATCATGCAACATGACCAGGGGAATCCCTTGCTTTGGCCTGGACTGCTATGAAAAGTCGTACTGAATATT
CTATTT--AAAATCGTACGGAACACTATGGTGTACGCATAGCAGCCCTCTTAAA-------CACCAACTATTTAGGTTTC
CGTGGCCAGAAAAAGTCTACATAAACACCAATACATTGTTGAACTTGATGCACCTTACTC---------ATGGTCATGGA
GGTCTCGTTCTCCCATGCCTTGCTCTTAGCTTCTCTTCTCCTCCTCCTGTACTTGCTCTCCTCCCGTGGCAAGAACTCTA
GCAATGGCAGC------------ATCCCGAGCCCACCAGCGCTTCCCGTCCTCGGCCACCTCCATCTCCTCAAGAAGCCG
CTGCACCGCTCCCTCGCCGCGCTCGCCGTGCGCTACGGCGGCGGCCGGGACGGCGCCGGTCTCCTCCTTCTCCGGTTCGG
CACAAGGCCGGTCCTCCTCGTCTCCTCCCCGGCCATTGCGGAGGAGTGCTTCACCGTCCACGACGTCGCGCTCGCAGATC
GCCCGGGGCTTGCGTCGCGGCGGCTGCTCACCGGCGATGAGTGCCCCAGCATCGCCAGCGCGAGCTACGGTCCGGTCTGG
CGCCATCTCCGCCGTATCGCTACCGTGCATGCGCTCTCCGCGCACCGCCTTTCGCTGACGACCTCCGCGCGCGACGCCGA
GGCCCGCGCCATGGCGCGGAAGCTCTGGCGTGCCACCCGT---------GGCGCCACGGCGGTCAGCGTGAAGTTCACGG
CGTTCGAGTTTGTTGTCAACGTGATCATGGACATGGTCGCGGGAAGGCGCATGGAGGAGGACGAGGTCCTCCGGTTCAAG
GCGATGACCGAGGCGGGGTTCGCGGCCGCCGGTGCGGCGAACCAGCACGACTTCTTGCCACTGCTACGGCTGCTGGACTT
TGGAAGGACGAGGAGGAGGCTCGCTGGCCTGGCCAAGGAGCGGCACGAGTTCGGCCAGGGTCTCATCGACGAATACAGAC
GTCTCCACCACCGTCACGGTGTCGTCGGTGCTGTCACCGAGGACACGACGTCGACACCGGCACAGAGAACGGTGATTGGG
GACCTGCTCCGGCAGCAGGAGGGGTCGCTGGAATCGTACGCCGACGTGGTCATCCGGACGACTTGCCTGGTGAGTGAGCG
TTTGCACAGACGAAATAACAGCAAGTGTCAGTATGCATGCATTGGCTAATTATTAGTGTCAATAACTCAGTGTTTCTGAG
CTGTGGTGATGTGATCTACCACTACAAGCTTAATTTTTTTCTCAAGCCTCAATTAGTGT--ACTTTCAACTTTGTGCTGC
ACATGTTTACACTACTAGCCACGCAATTAGTTTATGACAACACAGTCTGATGTGTACTACACTGGCCATTTGGTAGTGAC
AATAATTCAATTTCCATTAATAAAATGTACTGGTAGTGAGATACACGTAGCCAGGTAGCTCAGTTTTTAACAAAGATTTT
ACAAAGCCAAGCCACCGTTTCACTAGTTTACTCGAATGCATTGATGTTAGGCTGGTTTTGAAGAAATTTTCAAGATATTT
TCATCTCGAAATCGCGAATATA----------------------------------------------------------
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----------------------------------------------------------------------ACAATGTTAA
CCAGCCACAAACTTTCTGAGAATGAAGTTAATACATCACGATAAGAGTCATATACCCGCATATTGTGATTTGTG--ACAC
AGTCACTCACACTTGCCTTGATTGTCTGTTCGATCGGTACGTTCATAATTTCATAAAATTGTCATATTGACAAATCCCTT
TTCAACATATGATTGTGCAGAGCTTGCTTCAAGCCGGGACGGACACGTCATCTAGCACGATCGAGTGGGCAATGGCTCTT
CTACTTAACAATCCACTCGTTCTTGCAAAGGCGAAGGAGGAGATCGACGCCGTTGTGGGCACATCCCGGCTGCTCGAGGA
GCACGATCTCGCATGCCTCCCATACCTTCGTTGCATCATCACCGAGACCCTTCGGATGTACCCTATCGCCCCGCACCTTG
CCCCGCATCAAGCCTCCTCTGACTGCGTCGTTGCTGGCAGGCAATACATCATAGCCCGCGGAACAATGGTATTGGTTGAT
GTGTACTCCATGCAGCGGGATCCTACCATGTGGGATGAGCCGAACAGGTTCATTCCTGAGAGGTTTGAGGTTGGCATTGA
TGAGGACGGTGACAAACAGGTGGTCAGGATGATGCCATTCGGTATGGGCCGGCGGAAGTGCCCCGGTGAGGGGCTAGCAT
GGAGGACAATGGGGGTAGCACTTGGGGTGATGGTGCAGTGCTTCAGGTGGGAGCGGATGGGGAAAGACGAGGTGGACATG
GGCGAGGGGTCAGGGTTCACCATGCCCATGGTTGTACCACTAGTGGCAATGTGCCAACCCTGCGAAGAAATGAATGAAAT
TCTCAAGAGGATTTAGAAATCCGGTCATTCCAGCATTGTACCCTTGCAAGGCCAATCAAAGAAGAAAATAAATTTACATC
CCACACCTTGTCTACGCGCATATTAAATTAGTATGACCATTTCCTAAGAAAACCTAACATTGTTCAAGGCCACCAAACAT
AAATTATGTATATCTAAGCTCAAAAGCAATTGTAGGATCAAAGCATGTGGACTGGAGGGGGG-------CTGTATAGAAG
ATTTAAATTTCTTCGAAAACCACAAATATCTGAACACAACACTGTGAAAAAGCAGTAAGCAGACGCAGTTCTACTTGAAG
ATAAACTACTACTAGAAATAACTTAGGAAAAAAAGATAAGTGCTAGTAGATGAAGAACATGTGAACACACAAACATATCA
TTTTAAGTACAATGAGGGAAAATATGAAGGATAACATATTACCTGGTACAGATGGAAATGCTAATCAGATATGAAGAACA
AATCACCGAAAAAGAACACAATGAAGGACAACTCAATAGAATGTAAATACTGAAGTAAATACGGTAATTAAGAAAGAAAT
TATGTTGCTCGATGGCGACAAGACATTTGTCCTACCAGTTCACTCTTCTGCT-AAAAAAGCTATGTCTAGATGGAGTGCC
TTGTAAATGAACACAGATGCAAACCTCTCTCCTTCCTATTCTCCTCAACGTGAAGTTCCACGAACTGCAGTTGATTTCAC
TCGTGGTATATTCTTCAAGGCAATCTCCAAACCTTTACAGATTTTGTCTTCAATAAACCACAAAGACTCTTGGTTGCTCA
AGATTGACGACTACCATCTAGAGAGTGACAGCTCTCACGACTAATAGGCACAAGCTAATTCAAGCTAGTCCCCTGTGATG
CTCAACCACTAAGTTTTGGCTATGGGGTTTTCTCTCAAAGGATTCACTCAAATCTCTTGGAGCAGGGTGCTCAAACA---
--------------------------------------------------------------------
>chr5B_713
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-GGATCATGCTAATGGTGATTTCATTTTTTAAAATCTTGACACGCACAGATCCCATCTTGTAAAGTCAATCGTCAGACAA
AAAAGAGTTGTATCATGCAGCATGACAAGGGACC-CCCTTGCTTTGGCCTGAACTGCTATAAAAAGTCGTACTGAATATT
CTC-TAAAAATATCGTACTGAATATACA---GTAGGCATAGCAGCCCTCTTAAGTCTTAATCACCAACTATTTAGGTTTC
CGTGGCTAGAAAAAGTCTACATAAACACCAAGACATTGTTGAACTTCATGCAAACTGATTAAGCACCTTATGGTCATGGA
GGTCTCCTTCTCGCATGCCTTGCTCTTGGCTTCTCTTCTCCTCCTCTTGTACTTGCTCTCCTCCCGTGGCAAGAACTCTA
GCAATGGCAGC------------ATTCCGAGCCCACCAGCGCTTCCCGTCATCGGCCACCTCCATCTCCTCAAGAAACCG
CTGCACCGCTCCCTCGCCGCGCTCGCCGTGCGCTACGGCGGCGGCCGGGACGGCGCCGGTCTCCTCCTTCTCCGGTTCGG
CGCCAGACCGGTCCTCCTCGTCTCCTCCCCGGCCATTGCCGAGGAGTGCTTCACCGTCCACGACGTCGCGCTCGCTGATC
GCCCGGGGCTTGCGTCGCGGCGGCTGCTCACCGGCGATGCGTGCCCCAGCATCGCCAGCGCGAGCTACGGTCCGGTCTGG
CGCCACCTCCGCCGCATCGCTACCGTGCACGCGCTCTCCGCGCACCGCCTTTCGCTCACGACCGCCGCCCGCGATGTTGA
GGCCCGCGCCATGGCGCGGAAGCTCTGGCGAGCCACCCGTCTG------GGCGCCACGGCGGTCAGCGTGAAGCTTACGG
CGTTCGAGTTTGTTGTCAACGTGATCATGGCCATGGTCGCGGGAAGGCGCATGGCGGGGGACGAGGTCCTCCGGTTCAAG
GCGATGACCGAGGCGGGGTTCGCGGCCGCGGGTGCGGCGAACCGGCACGACTTCTTGCCACTGCTACGGCTGCTGGACTT
TGGAAGGACGAGGAGGAGGCTCGCCGGCCTGGCCAAGGAGCGGCACGAGTTCGGCCAGGGTCTCGTCGACGAGTACAGAC
GTCTTCACCAAGGTCACGGTGTCGTCGGTGCTGTCACCGAGGACACGACGTCGACGCCGGCACAGAGAACGGTGATTGGG
GACCTGCTCCGGCAGCAGGAGGGATCGCCAGAATCGTACGCCGACGTGGTCATCCGCACGATTTGCCTGGTGAGTGAGCG
TTTGCACAGACGAAATAACAGCAAGTGTCAGTATGCATGCATTAGCTAATTATTAGTGTCAATAACTCAGTGTTTCTGAG
CTGTGGTGATGTGATCTACCACTACAAGCTTAATCTTTTTCTCAAGTCTCAGTTAGTGTGTACTTTCAACTTTGTGCTGC
ACATGTTTACACTAGTAGCCACGCAATTAGTTTATGACAACACAGTCTGATGTGTACTACACTGGCCATTTGGTAGTGAC
AATAATTCAATTTCGATTAATAAAATGTACTGGTAGTGAGATACACGTAGCCAGGTAGCTCAGTTTTTAACAAAGATTTT
ACAAAGCCAAGCCACCGTTTCACTAGTTTACTCGAATGCATTGATGTTAGGCTGGTTTTGAAGAAATTTTCAAGATATTT
TCATCTCGAGATCGCGAATAT-----------------------------------------------------------
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----------------------------------------------------------------------ACAATGTTAA
CCAGCCACAAACTTTCTGAGAATAAAGTTAATACATCACGATAAGAGTCATATACCCGCAGATTGTGATTTGTGACACAC
AGTCACTCACACTTGCCTTGATTGACTGTTCGATCGCTACGTTCATAATTTCGTAAAATTGAGATATTGACAAATCCCTT
TTCAACATATGATTGTGCAGAGCTTGCTTCAAGCTGGGACGGACACGTCATCTAGCACGATCGAGTGGGCAATGGCTCTT
CTACTTAACAATCCACACGTTCTTGCAAAGGCGAAGGAGGAGATCGACGCCGTTGTGGGCACATCCCGGCTGCTCGAGGA
GCATGATCTCGCATGCCTCCCGTACCTTCGTTGCATTATCACCGAGACCCTTCGGATGTACCCTATCGCCCCGCACCTTG
CCCCGCACCAAGCCTCCTCTGACTGTGTCATTGCTGGCAGGCAATACATCATCGCATGCGGAACAATGGTGTTGGTTGAT
GTGTACTCCATGCAGCGGGATCCTACCATGTGGGACGAGCCGAACAGGTTCATTCCTGAGAGGTTTGAGGTTGGCATTGG
TGAGGACGGCGACAAACAGGTGGCCAGGATGATGCCATTCGGCATGGGCCGGCGGAAGTGCCTCGGCGAGGGTCTAGCAT
GGAGGACAGTGGGGGTAGCACTTGGGGTGATGGTGCAGTGCTTCAGGTGGGAGTTGATGGGGAATGAGGAGGCGGACATG
AGCGAGGGGTCAGGGTTCACCATGCCCATGGTTGCGCCACTAGTGGCAATGTGTCAACCCCGTGAAGAAATGGATGAAAT
TCTCAAGAGGATTTAGAAGTTCGGTTATTCTAGCATTGTACCCTTGCAAGGCCAATCAAAGAAGATAATACATTTACATC
TGACACCTTGTCTACGCGCATATTAAATTAGTATGACCATTTCCTAAGAAAAACTAACATTGTTCAAGGCCACCAAACAT
AACTTACGTATATCGAAGCTCAAAAGCAATTGTAGGATCAAAGAATGTGAACTAGAGGGGGG-------TTGTATAGAAG
ATTTAAATTTCTTTGGAAAACACAAATCTCT----------CTGCGAAAAAACCATAAGCAGATGTAGTTCTACTTGAAG
ATAAACTACCACTAGAAATAACTTAG-AAGAAAAGATAAGTGCCAGTAGATGAAGAACATGTGAACACACAAATATATCA
TTTTAAGTACAGCGAGGAAAAATATGAAGGATAACATATTAGTCGGTACAGATGGAAATGCTTATCAGATATGAAGAACA
AA--------------CACAATGAAGGGCCATTCAATAGAATGTAAGTACTGAAGTAAATACGGTAATTAAGAAAGAAAT
TATGTTGCTAGATGCCGACAAGATATTTGTTCTACCAGTTCACTCCTCTACAAT-AAAAGCTAGGTCTAGATGGAGGGCC
TTGTAAACGAACACATACGCAAACCTCTCTCCGTCCTATTCTC-TCAACGTGAAGTTCCTCGAACTTCAGTTGATTTCAC
TCGTGGTATACTCTTCAAGGCAATCT------------------------------------------------------
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--------------------------------------------------------------------
>chr5D_1023
--------------------------------------------------------------------------------
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-----------CGCATGCCTTCCTTGTAGCTTCTCTTCTCCTCCTCTTGTATTTCCTTTCCTCTCCTCGCAAGGACCTTA
ATGGACATGGCCATCTCAAGAGTATCCCAAGCCCGCCCGCCCTCCCCGTCATCGGCCACCTCCACCTCCTCAAGAAGCCG
CTGCACCGCTCCCTCTCCGCGCTCGCTGCCCGCTACGGCGGTGGCCGCGACGGCGTCGGTCTCCTGAGCCTTCGGTTCGG
CGCCCGGCCGGTCCTCCTCGTCTCCTCCGCGGCCATCGCCGAGGAGTGCTTCACCGTCCACGACGTCGCGCTGGCGGATC
GCCCCGGGCTCGCGTCACGGCGGCTCCTCACG---GACGAGTGCCCCAGCATCGCCTTGTCTAACTACGGCCCTCTCTGG
CGCAACCTCCGCCTCATCGTCACCGTGCACGCGCTCTCCGCGCACCGCCTCTCACTGACGTCTGCCGTGCGTGCGACCGA
GGTACGCGCCATGGTAAAGCGGCTCTACGGGC------------GCGCCGGCGCCACGCCGGTTAGCGTGAGGGAGACGG
CTTACGAGTTCGTGGTCAACGTGATCATGGCCATGGTCTCCGGGAGGCGCATGGCGGAGGAGGACGTGCGCTGGTTCATG
GCGTTGACGGAGGCTGGCTTAGCGGCGGCCGGATCGGCCAACCGCCAGGACTTCCTGCCGGTGCTGCGGTTGCTGGATTT
CGGGAGGACGAGGAGAAGTCTTGCCGGCATCGCCAAGGAGCGCCGTGACTTCGGCCAGCGGCTCATCGACGAGTACAGGC
GCCTCAACCCCCGTGGCGATGA---------------------------GACGTCGTCGGCGCCCAGGACGTTGCTCGGC
GACGTGCTCCGGCAGCAGGAGCGGTCGCCGGAGTCGTACCCCGACGTGGTCATCCGCACCCTCTGCATGGTGAGT-----
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--------------------------------------------------------------------
>chr5B_1023
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-----------CGCATGCCTTCCTTGTAGCTTCTCTTCTCCTCCTCTTGTATTTCTTCTCCTCTCCTCGCAAGGACCTTA
ATGGACATGGCCATCTCAAGAGTATCCCAAGCCCTCCCGCCCTCCCCGTCATCGGCCACCTCCACCTCCTCAAGAAGCCG
CTGCACCGCTCCCTCTCCGCGCTCGCTGCCCGCTACGGCGGTGGCCGCGACGGCGTTGGTCTCCTCAGCCTTCGGTTCGG
CGCGCGGCCGGTCCTCCTCGTCTCCTCCGCGGCCATCGCCGAGGAGTGCTTCACCGTCCACGACGTCGCGATGGCGGATC
GCCCCGGGCTCGCGTCGCGGCGGCTCCTGACG---GACGAGTGCCCCAGCATCGCCTTGTCTAACTACGGCTCTCTCTGG
CGCGACCTCCGCCGCATCGTCACCGTGCACGCGCTCTCCGCGCACCGCCTCTCGCTGACGTCTGCCGTGCGCGCGACCGA
GATACGCGCCATGGTAAAGCGCCTCTACGAGCGCGGCGGAGCCGGCGCCGGCGCCACGCCGGTAAGCGTGAGGGCGACGG
CGTACGAGTTCGTGGTCAACGTGATCATGGCCATGGTCTCTGGGAGGCGCATGGCGGAGGAGGACGTGCGCTGGTTCATG
GCGTTGACGGAGGCTGGTTTAGCGGCGGCGGGATCGGCCAACCTCCAGGACTTCCTGCCGGTGCTGCGGCTGCTGGATTT
CGGGAGGACGAGGAGAAGTCTCGCCGGCATCGCCAAGGAGCGCCGTGACTTTGGCCAGCGGCTCATCGACGAGTACAGGC
GGCTCAACCCCCGTGGCGAGGA---------------------------GACGTCGTCGGCGCCCAGGACGTTGCTCGGC
GACGTGCTCCAGCAGCAGGAGCGGTCGCCGGAGTCGTACCCCGACGTGGTCATCCGCACCCTCTGCATGGTGAGT-----
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--------------------------------------------------------------------
>SNPs
-----------------S------S--------------S-------------S--------------------------
--S-----S-SS----------S-----------S------------------------S-S------------------
--------------------S--S-S--------SS--S--S-----------------SSSS-SSSSSSS--------S
-----------------------S---S-------------SS--------SS--S------------------------
--S-----S-------------S---------------------S-------S----------SS------S-------S
------S-------S----------S------S------------------------------S----------------
-----S----S-------S----------------------S-S--------SS--S-----------------------
--S-------S-----------------S-------------S-------------------------------------
---------------------------------------------------------------------S---S------
S-------------S-----S-------S-------------------S-------------S-----------------
-------------------------------------------------------------------------S--S---
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------S-----------------------
------S-S-------------------------------------------S---------------------------
----------------------------S---------------------------------------------------
-----------S-----------S-----------S-----------------------------S--------------
-------------------------------S------------------------------------------------
------------------------------S-------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------------------------S---S-----------------------------------------
------------------S-------------------------------------------------------------
------------------------S--------------S----------------------------------------
----------------S--------------------------S------------------------------------
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--------------------------------------------------------------------------------
-------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------------------------------------------------S
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------S----------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
-----------------------------------------------S--------------------------------
---------------------S----------------------------------------------------------
--S-----------------------------------------------------------------------------
--S-----------------------------------------------------------SSSSSSS-----------
--------------S-----------------------------------------------------------S-----
----------S---------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------S--S--------------------------------------------------S------------------
-S------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
------------------------------------S--S----------------------------------------
---------S-------------------------SS---S--------S-------------SS----S----------
---------------------S-S---------------------------------S-------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_999
--------------------------------------------------------------------------------
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-----------------CGGAACATTATGGTGTACGCAC-----------------------------------------
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>reverse_2629
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--------------------------------------------------------------------CCATTGCATGCA
TGTGGGAG------------------------------------------------------------------------
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>forward_1229
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---------CTAGCAATGGCAGCATCCCT---------------------------------------------------
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--------------------------------------------------------------------
>reverse_3148
--------------------------------------------------------------------------------
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---------------------------AATACAAGCCAAGCCACCGT---------------------------------
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--------------------------------------------------------------------
>forward_2648
--------------------------------------------------------------------------------
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--------------------------------------------------------------------CCATTGCATGCA
TGTGGGAG------------------------------------------------------------------------
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>reverse_4163
--------------------------------------------------------------------------------
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--CCACCTTGTCTACGCGCATA----------------------------------------------------------
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--------------------------------------------------------------------
