>input_sequence_25059
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--------------------------------------------GCTAAATCTAAAGTAAAGGAAACCCCGAGCTAAATC
CAACGCTAGAATTAAACACG-------------------------------------------CTCGCCACGGAAAGTAC
GCACCAGCGAGTGAGCTCCCACCTCCCTCCCT--CCCCTCCTCTCTGCTCCC-----------------ACCACCAAACC
CTCCGATCCAAACCCTCTCTCACCTCGCATGCGGCCGCGCCCCCCGAGGCGGCGGCGCAGCTGACCCCTTCCCACCGCCG
CTCCCGGAGCCCGCCGGCATGGGCGGGGTCACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCCTC
CTACACGCTCGTCGCCGACGCGGCCACCGGCCGCCTCCTCATCCCCGAGATCTCCCGGCCCCCCGCGCGCCGCCGGAGGC
GGGACGGCGGCGGGGACTCCTCCTCAGGTGCCGCCGCAGCAGCCGAGGAGGAGGACGCCACGGAGGTGGTGCGCCTCCGC
ACGCGCCGCGGGAACGAGATCGTCGCCGTCTACGTGCGCCACGCGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAA
CGCCGCCGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCGTCAACATTTTCGGGTAATGCT
CCCCTCCCCCCGCCTCACTTCGCTTCATTCT---------TACTTCTTCGAAGCCGGAGTTGCTTGCGGCTGAGAAGGTT
TCCATTAGGGGAAACTTCCGGGAGACGTTTGGGAAAGGTGCGTACTGGGTAGTAGTAGTAGGAGTATATGGATATGCGTT
GTGCATTTATTAGCAGTATTAGATTCCGTGTGCCTATTTATGAATGGTTGCTGCAATTTTGCAAGAGGGGTTTTTCTCTA
TTTTTTCGGA-GTAAATTGGCGAAAGATCATCTTATTTAGGTAGTACCACTTCACTGCTGCAGATCCTCTTCCTCTCAAA
TGTTTGAATTGCACACAAGATAAGGAAAAAGAACCTTGTTGCTAGTATTAGCTGCGGATGAAATTCAGCTGTATTAGCTG
CC-----------ACGTTTCCCCGTTCCAGTTAGTTACTGTTTAGCACTATGTAATCTGTCCAGCCATGAAAATTATCTT
TATATTGCTGTCCAACACGGCGAGACCCTCAATGTATATTTGGTTCTTGCTTTTGGTGTTA--AGGGACACACCATATCA
GTCCATTAGTTTAGAAAACCTCGACCTTATTTCTAGGATTAGATGGATTTAAGAAAACAG--GCGGTTGCCTAGTAG-TG
TGCTGTATATGCTACAGCAGAAACTCTGTAACTTAAGTTTAATATAGTTCCAGTTCCAGGCCATCTCTTGTTAGTTACAC
CGTTATACGGTAAGAATGGGGCCATGGTACTGTACCCGACATTGTGGGGGTGCT-AAAGAAATAAGATAATGTATTTTGT
GGAGGTAGCTTGGATCTGACACAAGAAACTTTTCGAATGATGAGGAGAGGGTATGTTGTATTTCGAGGCATAATTAGTGG
GTCTGTCTAGTGGATCACCAATGTACCTGATGATTGGAATTATGCAGACATGGATCCCAAGACCCCTCCCCCCACACCAC
CCACACACTCGCTTGATTTATGTTCAA-----------------------------------------------------
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-------------------------AGTTAGTACCCTACAAAAGAATATGTTTCCCCCCTGACATCCATCTTAATAGACC
CCCCCTACGTGTTGCAGGTATGATTATGCTGGTTATGGGAGGTCTACAGGGAAGGTATATTTGTGTTTGCGCTGTTTCAT
CTTTAACTTACATAGCAATGCCAATCTTCTATGCAAGCATATCTTAATGGACAATTTATTCTTCCATTGAACAGCCCACT
GAGTATAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTGCCAGATGAGGATATAAT
TTTGTATGGACAATCTGTTGGAAGTGGTCCAACCATTGATCTTGCTTCACGGTTGCCAAATTTGCGAGCTGTGGTTCTTC
ACAGTCCTATTTTATCTGGACTGAGAGTGCTATATCCAGTCAAAAAAACTTTTTGGTTTGACATTTACAAGGTTAATTCG
ATTCCCCCCCCCCGCCCCCTCCCCAGAGTTGTTGATGATAAATGGCTGATAAAATTTTCCTCCATTTTGTAGAATGTCGA
CAAAATCAGCCTGGTGAATTGTCCAGTTCTTGTCATTCATGTAAGTTCTATTAGTTTACCCTACCCTCTTCTTTTTCAAT
ACTGTCTGCCTCTTGC--------ATTGCCTCTCTGGTGGGATAATGG------------------------------AT
TGAGAAGCTGACA-ATAGATGATTCATTTGTAAATGCTCACCAAGCCAAGTATGTAAAAATAAAACAAAAATGAATCAAA
TGAACAATCAGATGTCAAAGTTGCTGGGGTGATAATC----TAACACTAGAGTTTCTACTTTACAATTTTGGTGCTTCAG
TTGCCATAAGCCCATAACTGAAACAATTATAATACTTATGCCAGGGCACGTCAGATGATGTTGTTGATTGGTCCCATGGA
AAGCAGCTATGGGAGCTTTGCAAGGTGAAACATTCGCCTTTGTGGCTAAGTGGCGGTGGGCACTGCAACCTTGAGCTGTA
TCCTGACTACATCAGGCACTTGAAGAAGTTTGTGTCGAGCCTTGGCAAAAAATCAACGAAACCTGACTTGAAAGAGTTAC
CAGCAACAGAAGACACATCTCGCAAAGACGCAGAATCTGTGTCCTCGGACAAACCCCAAGAAGCTGCAAAGTGCCGACAG
ATCTCGCGGAAGAGCTTAGATAGTAGAGTTGGGAAATCCAAAACGGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGA
TGACGTTGACAAGTTTAGGAGGAGAAGATGCTTGGTTTGGTGATCTATGATATGACGTCTGCACAGTTCATGGAGTAGTT
TCCGAACACCATGGAATGGGGATCAAGCAACTGTGTCATACTGTATAGCGAGGAACAACGCCGACAGTTCCCGCAGTAGA
GGG-ATAATAGCTGTG-TTAAATGTGGGAGAAGAAGAATGAGGACGCTGGTGAATAAGCTGTTATTTATCAA--------
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>chr3A_1_TraesCS3A01G262400
GAGAGTTGGCTTGATATAAACCCTGAGTTTCTTATTTCGTGCCCACGGGCGGACTGTAACACAAAGGAGCTCCACTATAG
TACAAAATATTAGTGCACTTGTAGTATTTTGACGGGAGAATCGCGCGTAGAAGGCGCGGCAGATGTGTGA-----TTCTT
CCCAGCAAGCTCGTTGGTCAAAGGAGCTCCTGCTCCTCGTGACCTGGTCTCCCATGCCCGTCACGCCGTCCCGCGATATG
ATGCCACATCTCCTGTTTGCTGGCTGTGCACATGGATCAAATCAAAAGCGAACAAGGAGGAAACGGACGGAGAGAGAGAC
CCCCGTCCACCGATTGGACTTT-CCCCGCCGATCCCTATCCAACCGGCAGGAGGGAAAAGATCGATCTTTGCGTCCGGCG
CGCTCTGGGAC-----CGGACGGGTTCACCCGTCGGCGCGACGTGTGTGTGTGCCTGGGCTCGCGCG-G----GGGGCGT
CGTGTCTGCTCGTTCGTTCCGTATATGTGTGTAGGT---TTA--CTTTTGCTGGAGCTGTGCTAATTAAAGTGTAGGAGA
CACTCCAAGCTCGAGTCGAGTACATGACCCGCACCGATGAAGCGCAGATAAATAAAGCGGGAAAGACCGACGGGTTCTTT
ACAAAAGGAGCCATACAGCTTGTCATGTACTGGTATGCTGCAATCGTCACACCTTTACA-CCCCCATCCTAAAGAGAGCC
-TTTTCTTTTATCGGGAAACTAAAAAGGGAGCCGACCTCGCCACGTTCTCTCCTTCAACGT-------------------
-ACTCCTAGTTCTCTTCGCCTAGCCTAAACCATCTCTAGCCAACCATTTACATCTCCGACGATCCATTTTAATTGGTTCT
TTTTGTTGTTGAGGCAAATCCATTCTGAGTAGTAAAAAGAGAAAGAATGGGAGAAATATTTCACTAGTTGGCCACCCACC
A--------TAGACGACG---------------------------------ACGGCAGCTGGCGGCCTCAGCCGATCCGC
CACATTCCGCTAGTCCGGGTGAGTCCAACCGCTTCGCTCCTTTCGCTAAATCTAAAGTAAAGGAAACCCCGAGCTAAATC
CAACGCTAGAATTAAACACG-------------------------------------------CTCGCCACGGAAAGTAC
GCACCAGCGAGTGAGCTCCCACCTCCCTCCCT--CCCCTCCTCTCTGCTCCC-----------------ACCACCAAACC
CTCCGATCCAAACCCTCTCTCACCTCGCATGCGGCCGCGCCCCCCGAGGCGGCGGCGCAGCTGACCCCTTCCCACCGCCG
CTCCCGGAGCCCGCCGGCATGGGCGGGGTCACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCCTC
CTACACGCTCGTCGCCGACGCGGCCACCGGCCGCCTCCTCATCCCCGAGATCTCCCGGCCCCCCGCGCGCCGCCGGAGGC
GGGACGGCGGCGGGGACTCCTCCTCAGGTGCCGCCGCAGCAGCCGAGGAGGAGGACGCCACGGAGGTGGTGCGCCTCCGC
ACGCGCCGCGGGAACGAGATCGTCGCCGTCTACGTGCGCCACGCGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAA
CGCCGCCGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCGTCAACATTTTCGGGTAATGCT
CCCCTCCCCCCGCCTCACTTCGCTTCATTCT---------TACTTCTTCGAAGCCGGAGTTGCTTGCGGCTGAGAAGGTT
TCCATTAGGGGAAACTTCCGGGAGACGTTTGGGAAAGGTGCGTACTGGGTAGTAGTAGTAGGAGTATATGGATATGCGTT
GTGCATTTATTAGCAGTATTAGATTCCGTGTGCCTATTTATGAATGGTTGCTGCAATTTTGCAAGAGGGGTTTTTCTCTA
TTTTTTCGGA-GTAAATTGGCGAAAGATCATCTTATTTAGGTAGTACCACTTCACTGCTGCAGATCCTCTTCCTCTCAAA
TGTTTGAATTGCACACAAGATAAGGAAAAAGAACCTTGTTGCTAGTATTAGCTGCGGATGAAATTCAGCTGTATTAGCTG
CC-----------ACGTTTCCCCGTTCCAGTTAGTTACTGTTTAGCACTATGTAATCTGTCCAGCCATGAAAATTATCTT
TATATTGCTGTCCAACACGGCGAGACCCTCAATGTATATTTGGTTCTTGCTTTTGGTGTTA--AGGGACACACCATATCA
GTCCATTAGTTTAGAAAACCTCGACCTTATTTCTAGGATTAGATGGATTTAAGAAAACAG--GCGGTTGCCTAGTAG-TG
TGCTGTATATGCTACAGCAGAAACTCTGTAACTTAAGTTTAATATAGTTCCAGTTCCAGGCCATCTCTTGTTAGTTACAC
CGTTATACGGTAAGAATGGGGCCATGGTACTGTACCCGACATTGTGGGGGTGCT-AAAGAAATAAGATAATGTATTTTGT
GGAGGTAGCTTGGATCTGACACAAGAAACTTTTCGAATGATGAGGAGAGGGTATGTTGTATTTCGAGGCATAATTAGTGG
GTCTGTCTAGTGGATCACCAATGTACCTGATGATTGGAATTATGCAGACATGGATCCCAAGACCCCTCCCCCCACACCAC
CCACACACTCGCTTGATTTATGTTCAA-----------------------------------------------------
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-------------------------AGTTAGTACCCTACAAAAGAATATGTTTCCCCCCTGACATCCATCTTAATAGACC
CCCCCTACGTGTTGCAGGTATGATTATGCTGGTTATGGGAGGTCTACAGGGAAGGTATATTTGTGTTTGCGCTGTTTCAT
CTTTAACTTACATAGCAATGCCAATCTTCTATGCAAGCATATCTTAATGGACAATTTATTCTTCCATTGAACAGCCCACT
GAGTATAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTGCCAGATGAGGATATAAT
TTTGTATGGACAATCTGTTGGAAGTGGTCCAACCATTGATCTTGCTTCACGGTTGCCAAATTTGCGAGCTGTGGTTCTTC
ACAGTCCTATTTTATCTGGACTGAGAGTGCTATATCCAGTCAAAAAAACTTTTTGGTTTGACATTTACAAGGTTAATTCG
ATTCCCCCCCCCCGCCCCCTCCCCAGAGTTGTTGATGATAAATGGCTGATAAAATTTTCCTCCATTTTGTAGAATGTCGA
CAAAATCAGCCTGGTGAATTGTCCAGTTCTTGTCATTCATGTAAGTTCTATTAGTTTACCCTACCCTCTTCTTTTTCAAT
ACTGTCTGCCTCTTGC--------ATTGCCTCTCTGGTGGGATAATGG------------------------------AT
TGAGAAGCTGACA-ATAGATGATTCATTTGTAAATGCTCACCAAGCCAAGTATGTAAAAATAAAACAAAAATGAATCAAA
TGAACAATCAGATGTCAAAGTTGCTGGGGTGATAATC----TAACACTAGAGTTTCTACTTTACAATTTTGGTGCTTCAG
TTGCCATAAGCCCATAACTGAAACAATTATAATACTTATGCCAGGGCACGTCAGATGATGTTGTTGATTGGTCCCATGGA
AAGCAGCTATGGGAGCTTTGCAAGGTGAAACATTCGCCTTTGTGGCTAAGTGGCGGTGGGCACTGCAACCTTGAGCTGTA
TCCTGACTACATCAGGCACTTGAAGAAGTTTGTGTCGAGCCTTGGCAAAAAATCAACGAAACCTGACTTGAAAGAGTTAC
CAGCAACAGAAGACACATCTCGCAAAGACGCAGAATCTGTGTCCTCGGACAAACCCCAAGAAGCTGCAAAGTGCCGACAG
ATCTCGCGGAAGAGCTTAGATAGTAGAGTTGGGAAATCCAAAACGGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGA
TGACGTTGACAAGTTTAGGAGGAGAAGATGCTTGGTTTGGTGATCTATGATATGACGTCTGCACAGTTCATGGAGTAGTT
TCCGAACACCATGGAATGGGGATCAAGCAACTGTGTCATACTGTATAGCGAGGAACAACGCCGACAGTTCCCGCAGTAGA
GGG-ATAATAGCTGTG-TTAAATGTGGGAGAAGAAGAATGAGGACGCTGGTGAATAAGCTGTTATTTATCAAA-GAGGGT
ACGTCTCAACATGGTAACTTTCTCGGTTAATTAACCTGTATTGCAACCCCCAGTGGTGGTAGGATTTCCATCATGTAAAA
GTGTACCGTGTTATTGTCTGTAATCACGAGGGACAAGGATAGAACATTTGTGGCCACTTTGCGGCGCAGTCTAAAGTCTT
GGAGCAATCACAAGAAGCAACATATTCTAGTCTGGATATGCAAATATAGTGTTCATATGTTTTGTGGCTTGAAAGGAACT
TTCCATTCGTTGCGTCTTTCTGCAC-TTCATGTGTGTACACTGTACTGTATGTTACTTAGAATCTGACTGTTGGGGCTGC
AGAATAGACATAACTCAAGATCAGGTGAATCCCAAATGGTAAAAACCTATGTAATCATATGCATCATATAACCAGTTCAG
CACACCACTCCAGCGTACGTACGTAGTATGTACAGTACTGTCTCTACCGTGGCAGTTTAAAAAAACAAGCACATATTTAC
ATCAGCTGGAAGGGGGAAAAAAAGGAATCGTCGGATCGCTC---ATACACGGCAAGCAAATCTCTCAATAGTGATAAAAT
AAAAACTCGGCCGGCCGCAAACACTGATCTACTAAT----CTACTACTGGCTGGTGTTAGGGGTGGTGTTCCTGCTGTCC
CAGGGAGCGTGCACCGTGTTGGGAGAGAAGGGCTCGGCGAAGTCCTTCTTGCCTTTGCCTCCACCGTCTTTGTGACCCAG
GCAGTCATCCTGGATGGCCCTGAGCACGTCCAGCACCTCCCTGATCGGCGGGCGCATCTCGCCGTTCTGCTGCAGGCACC
GGAACGCCAGCTCCGCCACCATGGTCATCATCTTCCTCGCCGCCGGGTCCGACTCGTAGCCGAGCTCCACGTCCACCAGC
TCCTCCAGCCGGCACTTCTGGATCTTGCTGATGGCCATGCCGGCCAGGTTGATCTCGTTCCTCTGCCGGGTGATGTCCAC
GGCGGGCTTGGACGAGATGAGCTCCACCAGCACCACGCCGA
>chr3B_100
TGTAGTT-------------------------------------------------------------------------
--------------------------TTTTGCCGGGAGAATCGGGCGTAGAAGGCGCGGCAGATCGGAGACGAGTTTTTT
TCGAGAAAACTCGTTGGTCAAAGGAGCTCCTGCTCCTCGTGACCTGGTCTCCCATGCCCATCACGCCGTCCCGAGATATG
ATGCCACATCTCCTGTTGGGTGGCTGTGCACATGG-----ATCAAAAGCGAACAAGGAGGAAACGGACGGAGAGA----C
CCCCGTCCACCGATTGGACTTT-CCCCACCGATCCCTATCCAACCGGCAGGAGTGAAAAGATCGATTGTTGCGTCCGGCG
CACTCGCACTCTGGGACGGACGGGTTCACCCGTCGGCGCATCGTGTGTGTGTGCCTGGGCTCGCGTGCG----GGGGCGT
CGTGCCTGCCCGTTCT----GTATATGCGTGTAGGTTTATTA--CTTTTGCTCGAGCTCTGCTAATT-AAGTGTAGGAGA
CACTCCAAGCTCGAGT-----ACATGACCCGCCCCGATGAAGCGCAGCTAAATAAAGAGGGAAAGACCGACGGGTTCTTT
AGAAAAGGAACCATACAGCTTGTCATGTACTGGTATGCTGCAATCGTCACCCCTTTACACCCCCCATCCTAAAGACAACC
TTTTTCTTTTATCGGGAAACTAAAAAGGGAACCAACCTCGCCACGTTCTCTCCTTCCACATACTCCATAGTACATAGCTG
GACTCCTAGTTCTCTTCGCCTAACCTAAACCATCTCTAGCCATCCATTTACAACTGTGATGATCCATTTTAATTAG----
TTTTTTTGTTGAGGCAAATCCATTTTGATTAGTAAAAGAGAAAGAA--GGGAGAAATCTTTCACTGGTTGGCCACCCACC
AATCCACCATAGACCGACTAGTCTACTAGGACGACGACCGCAGAATTGGCCACGGCAGCCGGCGGCCTCAGCCGATCCGC
CACATTCCGCTAGTCCGGGTGAGTCCAACCGCTTCGCTCCTTTCGCTAAATC-----TAAAGGAAACCCCGAGCTAAATC
CAACACTAGAATTAAGCACACACACACTCTTCCCCTCAAAAAAAATAAAAAAAATTAAGCACACTCGCCACGAAAAGTTC
GCTCCAGCGAGTGAGCTCCCACCT----CCCT--CCCCTCCTCTCTGCTCCCACCAGGCCACCACCACCTCCACCAAACC
CTCCGATCCAAACCCTCTCCCACCTCGCATGCCGCCGCTCCCCCCGAGGCGGCGGCGCAGCTGACCCC-----ACCGCCC
CTCCGGGAGCCCGCCGACATGGGCGGGGTGACCTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCCTC
CTACACGGTCGTCGCCGACGCGGCCACCGGCCGCCTCCTCATCCCCGAGATCTCTCGGCCCCCCGCGCGCCGCCGGAGGC
GAGACGGCGGCGGGGACTCCTCCTCCGG---CGCCGCCGCCGCCGAGGAGGAGGACGCCACGGAGGTGGTGCGCCTCCGC
ACGCGCCGCGGGAACGAGATCGTGGCCGTCTACGTGCGCCACGCGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAA
CGCTGCCGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCGTCAACATTTTCGGGTAATGCT
CCCCTCCCCCCGCCTCACTT---------------------------TCGAAGCCGGACTTGCTTGCGGCTGAGAAG-TT
TCCGTTAGGGGAAACTTCCGGGAGACGATTAGGAAAGGTGCGTACTGGGTAGTAA------------ATGGATATGTGGT
GTGCATTTATTAGTG---TTAGATTCGGTGTGCCTATTTCTGATTGGTTGCTGTAATTTTGCAAAAGGGGGTTTTCTATA
TTATTTCGGG-GTAA----------GATCATCTTATTTTGGTGC--T-ACTTCACTGCTGCAGATCCTTTTAGACTCAAA
TTTTCGAATTGCACACAAGATAAGGAAAACAAAACTAGTTACTAGTATTAG-TGCGGATGAAATTCATCTGTATTTGTTG
---------------------------------GTTCCTGCTTAGCACTATTTAATCTGTCCAGCCATGAAAATTATCTT
TGTATTGCTGTCCAACACGGCGAGACCCTCAATGTATATTTGGTTCTTGCTTTTGGTGTTA--AGGGACACACCGTATCA
GTCCATTAGTTTAGAAAATCTCGACCTCATTTCTAAAATTAGATGGATTTCAGAAAACAG--GCGGTTGCCTAGTAG-TG
TGCTGTATATGCTACAGCAGAAACTCTGTGACTTGAGTTTA--ATAGTTCCAGTTCCAGGCTATCTCTTGTTAGTTATAC
CGTTATACGGTAACAATGGGGCCATGGTACTGTACCCGACATTGTGGGGGTGCT-AAAGAAATAAGATAATGTATTTTGT
GGAGGTAGCTTGGATCTGACACAAGAAACTTTTCGAATGATGAGGAGATGGTATGTTGTATTTCGAGGCATAATTAGTGG
GTCTGTCTAGTGGATCACCAATGTGCCAGATGATTGGAATTAAGCAGACATGGATCCCAAGA-CCCTCCCCCCACACCAC
CCACACACACGCTTGATTTATGCTCAA-----------------------------------------------------
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-------------------------AGTTAGTACCCTACAGAAGAGTATGTTTCCCCCCTGACATCCATCTTAATAGACC
CCCC-TACGTGTTGCAGGTATGATTATGCTGGTTATGGGAGGTCTACAGGGAAGGTATGTTTGTGTTT--TCTGCTTCAT
CTTTAACTTACGTGGCAATGCTAATCTTGTATGCAAGCATATTTTAATGGACAATTTATTCTTCCATTGAACAGCCCACT
GAGTATAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTGCCAGATGAGGATATAAT
TTTGTATGGCCAATCTGTTGGAAGTGGTCCAACCATTGATCTTGCTTCACGGTTGCCAAACTTGCGAGCTGTGGTTCTGC
ACAGTCCCATTTTATCTGGACTGAGAGTACTATATCCAGTCAAGAAAACTTTTTGGTTTGACATTTACAAGGTAAATTCG
ATTT---------GCACCCTCCTCATCAGAGTTGGTGATAAATAGCTGATATATTTTCCCTCCATTTTGTAGAATGTTGA
CAAGATCAGCTTGGTAAATTGTCCAGTTCTTGTCATTCATGTAAGTTCTATTAGTTTACCCTACCCTCTTCTTTTTCAAT
ACTATCTGCCTCTTGCTGTCTTGCATTACCTCTCTGGTGGGATAGTGGGATTTGTTTTG-GATTTGTAATACCACTACAT
TGAGAAGCTGAAT-ATAAATGATTCATTTTTAAATGCTCACCAAGCCAAGTATGTAAAAATTACACAAAAATGAACCAAA
TGAACAATCAGATGTTGAAGTTGCTGGGGTGATATAACATGTATCACCACAGTTTTTATATCAGAATTTTAGTTATTCAG
TAGT--------CATAACTGAAACAGTTATAATACTTATGCCAGGGCACGTCAGACGACGTAGTTGATTGGTCCCACGGA
AAGCAGCTATGGGAGCTTTGCAAGGTGAAACATTCACCTTTGTGGCTAAGTGGCGGTGGGCACTGCAACCTTGAGCTGTA
TCCTGACTACATCAGGCACTTGAAGAAGTTTGTGTCGAGCCTTGGCAAAAAGTCTACAAAACCTGACTTGAAAGAGTTAC
CAGCAACGGAAGACACATCTCGTAAAGACGCAGAATCTGTATCCTCGGACAAAACCCAAGAAGCTGCAAAGTGCCGGCAG
ATCTCGCGGAAGAGCTTGGATAGCAGAGTTGGGAAATCCAAAACAGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGA
TGACGTTGACAAGTTTAGGAGGAGAAGATGCTTGGTTTGGTGATCTATGGTATGACGTCTGCACAGTTCATGGAGTAGTT
TCTGAGCACCATGGAATGGGAATCAAGCAACTGTGTCGTAGTGTATAGCGAGGAACAACGGCGACAGTTCCTGCGGTAGA
GGGGATAATAGCTGTGTTTAAATGTGGGAGAAGAAGAATCAGGATGCTGGTGAATAAGCTGTTATTTATCAAA-GAGGGT
ACGTCTCAACATGGTAACTTTCTCGGTTAATTAACCTGTATTGCAACCCCCGGTGGCGTTAGGATTTCCATCATGTAAAA
GTGTACCGTGTTATTGTCTGTAATCACGAGGGACAAGGATAGAACATTTGCGGCCACTTTGTGGCGCGGTCTAAAGTCTT
GGAGCAATCACAAGAAGCAACATATTCTAGTCTGGATATGCAAATATAGTGTTAATATGTTTTGTGGCTTAAAAGGAACT
TTGCATTCGTTGCGTCTTTCTGCACCTTCATTTGTGTAC----TACTGTATGTTACTTAGAATCTGACTGTTGGGGCTGC
AGAATAGAGAGAACTCAGGATCAGGAGAACACAATATGGTAAAAACCTATGTAATCATATGTATCATATACCCAGTTCAG
CACTCCACTCCAATGTACGTATGCACTATGTACAGTACTGTCTCTACTGTGGCAGTTTAAAAAACCAAACACATATTTAC
ATCACCTGGAAGGGACAAAAAA--GAATCGTCGGATCGCTCATCATACACGGCAAGCAAATCTCTCAACAGCGATGAAAT
-AAAACTCGGCCGGCCGCAAACACTGATCTA---AT----CTACTACTGGCTGGTGTTAGGGGTGGTGGTCCTGCTGTCC
CAGGGAGCGTGCACCGTGTTGGGGGAGATGGGCTCGGCAAAGTCCTTCTTGCCTTTGCCTCCACCGTCTTTGTGACCCAG
GCACTCATCCTGGATGGCCCTGAGCACGTCCAGCACCTCCCTTATCGGCGGGCGCATCTCGCCGTTCTGCTGCAGGCACC
GGAACGCCAGCTCCGCCACCATGGTCATCATCTTCCTCGCCGCCGGGTCCGACTCGTATCCCAGCTCCACGTCCACCAGC
TCCTCCAGCCGGCACTTCTGGATCTTGCTGATGGCCATGCCGGCCAGGTTGATCTCGTTCCTCTGCCGGGTGATGTCCAC
GGCGGGCTTGGACGAGATGAGCTCCACCAGCACCACGCCGA
>chr3D_100
TGTAGTT-------------------------------------------------------------------------
--------------------------TTTTGCCGGGAGAATCGGGCGTACAAGGCGCGGCAGATCGGTGGC-----TCTT
CCCAGCAAGCTCGTTGGTCAAAGGAGCTCCTGCTCCTCGTGACCTGGTCTCCCATGCCCATCACGCCGTCCCGAGATATG
ATGCCACATCTCCTGTTTGCTTGCTGTGCACATGGATCAAATCAAAAGCGAACAAGGAGGAAACGGACGGAGA------C
CCCCGTCCACCGATTGGACTTTCCCCCACCGATCCCTATCCAACCGGCAGGAGGGAAAGGATGGATTGTTGCGTCCGGCG
CACTCTCACTCTGGGACGGACGGGTTCACCCGTCGGCGCATCGTGT----GTGCCTGGGCTCGCGTGTCGTGCGGGGCGT
CGTGCCTGCTCGTTCT----GTACATG--TGTAGGTTTATTATACTTTTGCTCGAGCTGTGCTAATC-AAGTGTAGGAGA
CACTCCAAGCTCGAGTCGAGTACATGACCCGCACTGGCGAAGCGCAGCC------AGAGGGAAAGATGAACGAGTTCTTT
AGAAAAGGAACCATACAGCTTGTCATGTACTGGTATGCTGCAATCGTCACCCCTTTACACCCCCCATCCCAAAGACACCC
-TTTTCTTTTATCGGGAAACTAAAAAGGGAACCAACCTCGCCACGTTCTCTCCTTCAGCATAC----------ATAGCTG
GACTCCTAGTTCTCTTCGCCTAGCCTAAACCAT-----------------------------------------------
-----------------------TTTGATTAGTAAAAGAGAAAGAA--GGGAGAAATCTTTCACTAGTTGGCCACCCACC
A--------TAGACCGACTAGTCCACA---ACGACGACCGCAGAATCGGCCACGGCAGCCGGCGGCCTCAGCCGATCCGC
CACACTCCGGTAGTCCGGGTGAGTCCAACCGCTTCGCTCCTTTCGCTAAATC-----TAAAGGAAACCCCGAGCTAAATC
CAACACTAGAATTAAGCACAC-------------------------------------------TCGCCACGAAAAGTAC
GCACCAGCGAGTGAGCTCCCACCTCCCTCCCCTCCCCCTCCTCTCTGCTCCCACCACGCCACCACCACAACCACCAAACC
CTCCGATCCAAACCCTCCTCCACTTCGCATGCCGCCGCGCCCCCCGAGGCGGCGGCGCAGCTGAC-----CCCACCGCCG
CTCCCGGAGCCCGCCGACATGGGCGGGGTGACGTCCACCATCGCCGCGCGCTTCGCCTTCTTCCCGCCCACGCCGCCCTC
CTACACGGTCGTCGCCGACGCCGCCACCGGCCGCCTCCTCATCCCCGAGATCTCCCGGCCCCCCGCGCGCCGCCGGAGGC
GGGACGGCGGCGGGGACTCCTC------------CGCCGCCGCCGAGGAGGAGGACGCCACGGAGGTGGTGCGCCTCCGC
ACGCGCCGCGGGAACGAGATCGTGGCCGTCTACGTGCGCCACGCGCGGGCCTCCGCCACGCTGCTCTACTCCCACGGCAA
CGCCGCCGACCTCGGCCAGATGTACGGCCTCTTCGTCGAGCTCAGCCGCCGCCTCCGCGTCAACATTTTCGGGTAATGCG
ACCCTCCCCCCGCCGCACTTCGCTTCATTGTTGCTGCTACTACTTCTTCTAAGCCGGACTAGCGTGCGGGTGAGAAGGTT
TCCATTCGGGGAAACTTCCGGGAGACGTTTGGGGAAGTTGCGTACTGGGTAGTAGGAGTA-----ATATGGATATTTGGT
GTGCATTTATTAGTAGTATTAGATTCCGTGTGCCTATTTATGATTGGTTGCTGCAATTTTGCAA-AGGGGGTTTTCTCTA
TTTTTTTCGTGGTAAATTAGCGAAAGATCATCTTATTTAGGTAGAGT-ACTTCACTGCTGCAGATCGTCTTGGACTCAAA
TTTTTGAATTGCACACAAGATAAGGAAAAAGAACCTAGTTCCTAGTATTAGCTGCGGATGAAATTCAGCTGTATTTGCTG
GTAGCAAGTTGCTACGTTTCCCCGTTCCAGTTAGTTACTGTTTAGCACTATATAATCTGTCCAGCCATGAAAATTATCAT
TGTATTGCTGTCCAACATGGCGACACCCTCAAGGTTTATTTGGTTCTTGCTTTTGGTGTTATAAGGGACACACCATATCA
GTCCATTAGTTAAGAAAACCTCGACCTGATTTCTAGGATTAGATGGATTTCAGAGTACATGAGCGGTTGCCTAGTAGGTG
TGCTGTATATGCTACAGCATAAACTCTGTAACTTAAGTTTAAT--------AGTTCCAGGCTATCTCTTGTTAGCTATAC
CATTATACGCTAAGAATGGGGCCATAGTACTGTGCCCGACATTGTGGGCGTCCTGAAAGAAATAAGATAATGTATTTTGT
GGAGGTAGCTTGGATCTGACACAAGAAACTTTTCGAATGATGAGGA-------TGTTGTATTTCGAGGCATAAGTAGTGG
GTCTGTCTGCTGGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACACACG
TTATGGGTTGCCCTTTACGCTCGTGAGTTAGTACCCTACACGAGAATATGTTTTCCTCCTGATATCCATCTTAATAGACC
CCG--TACGTGTTGCAGGTATGATTATGCTGGTTATGGAAGGTCTACAGGGAAGGTATATTTGTGTTTGCTCTGTTTCAT
CTTTAACTTACATAGCAATGCCAATCTTCTATGCAAGCATATCTTAATGGACAATTTATTCTTCCATTGAACAGCCCACT
GAGTATAATACATATGCAGACATTGAAGCAGCATATAACTGCCTCAAGGAAAAATATGGTGTGCCAGATGAGGATATAAT
TTTGTATGGACAATCTGTTGGAAGTGGTCCAACCATTGATCTTGCTTCACGGTTGCCAAATTTGCGAGCTGTGGTTCTGC
ACAGTCCTATTTTATCTGGACTGAGAGTGCTATATCCAGTCAAAAAAACTTTTTGGTTTGACATTTACAAGGTAAATTCG
ATTTACCCCCTG------CTCCCCAGAGTTGTGGCTGATAAATGGCTGATAT-ATTTTCCTCAATTTTGTAGAATGTCGA
CAAGATCAGCTTGGTAAATTGTCCTGTTCTTGTCATTCATGTAAGTTCTATTAGTTTACCCTACCCTCTTCTTTTTCAAT
ACTGCCTGCCTCTTGCTATCTTGCATTGCCTCTCTAGTGGGATAAAGGGATTTGTTTTTAGATTTGTAATACCACTACAT
TGAGAAGCTGAAAGATAGATGATTAATTTTTTAATGATCACCAAGCCAAGTATGTAAGAATTAAACGAAAATGAATCAAA
TGAACAATCAGATTTCGAAGTTGCTGGGGTGATATAACATCCATCACCCCAGTTTTTACATCAGAATTTCGGTGCTTCAG
TTGT--------CATAACTGAAACAATTATAATACTTATGACAGGGCACGTCGGACGACGTTGTTGATTGGTCCCATGGA
AAGCAGCTATGGGAGCTTTGCAAGGTGAAACATTCACCTTTGTGGCTAAGTGGCGGTGGGCACTGCAACCTGGAGCTGTA
TCCTGACTACATCAGGCACTTGAAGAAGTTCGTGTCAAGCCTCGGCAAAAAATCAACAAAACCTGACTTGAAAGAGTTAC
CAGCAACAGAAGACACATCTCGCAAGGACGCAGAATCTGTGTCCTCGGACAAACCCCAAGAAGCTGCGAAGTGCCGACAG
ATCTCCCGGAAGAGCTTAGATAGTAGAGTTGGGAAATCCAAAACAGTGGATGCTCCTGAAAAGCCACGAATGAGCTCAGA
TGACGTTGACAAGTTTAGGAGGAGAAGATGCTTGGTTTGGTGATCTATGATATGACGTCTGCACAGTTCATGGAGTAGTT
TCCGAACACCATGGAATGGGATTCAAGCAACTGTGTCATAGTGTATAGCGAGGAACAACGCTGACAGTTCCCGCAGTAGA
GGG-ATAATAGCTGTG-TTAAATGTGGGAGAAGAAGAATCATGACGCTGGTGAATAAGCTGTTATTTATCAAAAGAGGGT
ACGTCTCAACATGGTAACTTTCTCGGTTAATTAACCTGTATTGCAACCCCCAGTGGCGGTAGGATTTCCATCATGTAAAA
GTG----------TTGTCTGTAATCACGAGGGACAAGGATAGAACATTTGCTGCCACTTTGTGGCGCGGTCTAAAGTCTT
GGAGCAATCACAAGAAGCAACATATTCTAGTCTGGATATGAAAATATAGTGTTCATATGTTTTGTGGCTTAAAAGGAACT
TTCCATTCGTTGCGTCTTTCTGCAC-TTCATTTGTGTAC----TACTGTATGTTACTTAGAATCTGACTGCTGGGGCTGC
AGAATAGACAGAACTCAGGATCAGGAGAACACAATATGGTAAAAACCTATGTAATCATATGTATCATATAACCAGTTCAG
CACACCACTCCAATGTACGTATGCAATATGTACAGTACTGTCTCTACTGTGGCAGTTTAAAAAACCAATCACATATTTAC
ATCACCTGAAAGGGACAAAAAA--GAATCGTCGGATCGCTCCTCATACACGGCAAGCAAATCTCTCAACAGTGATGAAGT
-AAAACTCGGCCGGTCGCAAACACTGACCTA---ATACTACTACTACTGGCTGGTGTTAGGGGTGGTGGTCGTGCTGTCC
CAGGGAGCGTGCACCGTGTTGGGGGAGAAGGGCTCGGCAAAGTCCTTCTTGCCTTTGCCTCCACCGTCTTTGTGACCCAG
GCATTCGTCCTGGATGGCCCTGAGCACGTCCAGCACCTCCCTGATCGGCGGGCGCATCTCGCCGTTCTGCTGCAGGCACC
GGAACGCCAGCTCCGCCACCATGGTCATCATCTTCCTCGCCGCCGGGTCCGACTCGTAGCCGAGCTCCACGTCCACCAGC
TCCTCCAGCCGGCACTTCTGGATCTTGCTGATGGCCATGCCGGCCAGGTTGATCTCGTTCCTCTGCCGGGTGATGTCCAC
GGCGGGCTTGGACGAGATGAGCTCCACCAGCACCACGCCGA
>SNPs
SSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------S--------------------SS--------------
-----------------------------------------------------------S-------------S------
---------------------------------------------------------------------------SSSS-
---------------------------S--------------------------------------SS------------
-S----SSSS-----------------------------SS------------------------S--------------
----S----------SSSSS-------S------------------------S--------------S------------
-----------------------------------------------S---------S----------------------
-S-------S----------------------------------------S------------------------S-S--
------------------------------S--S-------------------------S--------------------
------------------------------------------S---------S--SS--S--------------S-SSSS
----S-------------------S---S--------SSSS--SS-SS---------S----------------------
--------------SSSS-----------------------------------------S--------------------
----------------------------------------------------SSSSS-----------------------
----S----------S---S----------------------------------------------------S-------
--------------------------------------------------------------------------------
-------------------S------------S-----------------------------------SS----------
----------------S------------S--------------------------------------------------
-------S------------------------------------------------------------------------
-------------------------S--SSS------S--S---------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S----------------------------S---------------------
-------------------------------------------------------S----SSSSS-----------S-S-
-------------S-----------------------------S--------------------S-----S---------
---------S--------S-------------------------SSSS-----------------------SSS------
-S----------------------------------S---S----------------------------------S----
SS-------------------------------------------------S----------------------------
-S------------------------------------------------------------------------------
---------------------------S----------------------S-----------------------------
-------------------------------------------------------------S---------------S--
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------S--S--------------S-------------------S-----------------
--------S-------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
----S-----------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------------------------------------------------------------------S------
---SS-----SSS--S------------------S----------------S----------------------------
---S------S----S----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-----------------S-------------------------------S------------------
----------------S-----------------SSS------S---S-S-----S---S-S-S----------------
---SSSSSSSSS-------------------------------------------S--S---------------------
-----------------------------------S--------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------S-------------------S---------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------S----------S-----S------------
----------------------------------------------------------------------S---------
-------------------------------S-------SSSS-------------------------------------
----------S------S-------S---SS-S-S--------------------------S------------------
------------SS-------S-S-S---------------------S----------------S---S-----------
----S---------SS------SS--------------------------------------------S------S----
S------------------------------SSS----------------------------------S-----------
-----------------------S--------------S-----------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>forward_317
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---------------------------------------------------------AGGAAACGGACGGAGAGAGA---
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>reverse_2046
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---------------------------------------------ACCACTTCACTGCTGCAGAT---------------
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-----------------------------------------
>forward_1125
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-----------------------------------------------------------------ACCCCGAGCTAAATC
CAACG---------------------------------------------------------------------------
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>reverse_2683
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------------------------------------------TGCAGACATGGATCCCAAGAC-----------------
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_1790
--------------------------------------------------------------------------------
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----------CGCCTCACTTCGCTTCATTC--------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3536
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---------------CCCCTCCCCAGAGTTGTTGA---------------------------------------------
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-----------------------------------------
>forward_2073
--------------------------------------------------------------------------------
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-----------------------------------------------------ACTGCTGCAGATCCTCTTCC-------
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>reverse_4285
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--------------------------------------------GGTGGATGTTCCTGAAAAGCC---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>forward_2074
--------------------------------------------------------------------------------
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------------------------------------------------------CTGCTGCAGATCCTCTTCCT------
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-----------------------------------------
>reverse_4421
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--------------------GATCAAGCAACTGTGTCATACTGT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>forward_2703
--------------------------------------------------------------------------------
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------------------------------------------TGCAGACATGGATCCCAAGAC-----------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>reverse_5064
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-----------------------GGAATCGTCGGATCGCTCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
