>input_sequence_25012
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------------------------------------------------------------------------ATGGATCC
CCACCCCACCCCCTTCCGAGGTAAGATAAGATATCAGCGCCATTCCGCTCTCAACATCCGAGCCCTGCCTCTCGTTTCCG
GGGATTAATTTCTTCGTGGTTTG-------CAGCGAAGCGGAAGTCGGTCGCTGCGCCGGCAAAGACGCCAGCGCCGAAG
CCCAAGTCCGTCGCCAACGGCACCGCGCGCGGGAGAATGACCACCTCCGCCACCACCAGCGCCGTCTCCGCGGGGGCCGC
TCCCCAGCCACGGCAAGGACCGCTGCGGCTCTAGAGTCTCTAGATTTGAC----TGTGTGTATGTAATCCTGTTCGTCTT
GCTTACCGAGGCTAGGTCTGCTGTTTTCAGGCCACGGCGCGCGTTCGGCACCGTCCGGAGCAGCAACTCCCTGGCCGAGA
AGCCGGCCCCGCCGCCGCCGCAGAAGCATTCAAAGCTGTCGCCCCCGCCTCCGCAAAAGCCTCTGAAGGTGTCGCCGCCG
AAGCTGCAGAAGCCTGCGGCAAAGGTATCGCCTCCGCCTCCGCAGAAGCCTGCTAAGGTTTCGCCGCCACCTCAGCAAAA
GCTTTCGAGGCTGTCCCCGCCGGTTCCGGCCAAGGCGGCCAGGCCTTCTCGTCCCGCAGAAAAGCCACTGAAGAAAGCTT
GCCCAGCCCCCCCGGATCTGGCGGCCAAGGCCAAGAAAAAGAGCCAGAGGGTGAGCTTCCAGGATGACGTGGCAGCGCTG
GCTCCCTCCGGAAGCGGGGAGAAGGTCAAAGCATCCACCGAAGACTCTGCTGGGCGCACGCCTATGGTGCCTGTCAAACC
CCTGGAGAAGAAGCCGGCGAAGGTTGTGGCCGCAGAGACCCCGTTCTTCAGCGCTCAGAATTGCAGCAGCTGCACGCTTG
ATCAGCTCGAGTCCGCCTCCTACTGGCTGGCACAGATCCATCTGGCCGAGTCTGTTGGCAAGCACAATGTCTCTGCCGCA
TTCTTCCGCCTTGCATTTGAATGCCAAGCTCAGGTAATAGTTCAAAGCACACTTACGAGTGAACGATTTGATATATTTTC
TGTGTATCCACCTTTT-----TACTGTAAGGAGCATATGAGCATGACATGGATGGTTAGTTTGATTTTCAGTT-------
-----ATGATTAGTACTGTACTTAGTACCAATCCAAGTAGGCTAAGACCGTTCCTTATTTCGGGAATAAGAACATGTTTT
TGTTTTGTTTTGTTTTGTGGGCAGCCATTTCACAGGATCCGAAGTGAGCTCAGGAACTATGTGGCGCGCCATGAGAGTGC
TAGCACTTTGACCCCTTTATTCCATGAGCTCCTGGTTGCCCATGCCATGGCAGTGAACCAACTGAAGTTTGACACTGATG
GGTCTGAAAAGGTGGATACACCTGCAACTACAAATACAGTTGACCAAAAGCTTGATGCTACCACACTGGTGCATGAATGC
TCTGAACGTGATTGTGGTGGTGATCTTGTTGATGTGGGGGAAGTCAGTGTTATCAAACAAGGAGAGGAAGAGATGGACCA
ACCGAGCTTTGAGCAGAAACTGGATGAAAGTTTTGCATTTGATGATTGTGAGGCTGTCATCGTGGACCGGCTAGCTGAAG
AACATTCTGAATTCGAAAAGATTATCGGTGTCAAAGGTCCTTGTGACAGTGAAATAGTCCAGTCAGCATGTCGCTCTTCC
ATCGACAGGCTGAGCTTGAGAGGATCCCCTCTAGCAAGGGGAGCATCTGAAAGACGCCTCTCGTCAGAGAGCCATTTAGA
TAAATTGTCTCCGTCTGCTGCAGGGAGCTTGTCTGCAAAGCGCTTATCATCATCTGGTAGCCCTTTCAACAACTCTCCGT
TCTGCAGGGGCTCGTTACAGAGGCTCACATCCAGTTGCCCTTCTTCTAAGAAGTCCTCCGCTAAAGGCGGCCTGTCTGCA
AAGCGGATGTCATCTGGTGGCCGCTCTGATGAGGAGCATAATAATGGTACTGCTGGAGCTGGTGATTCTAGCAGAGTGAT
TCAAGAAGGGGAATCTGGTTGCCACATTTTAGGTAAGTTAACATGTGCAGAGCTTTTCCTATGACTTGGTCATTGAGAT-
------TAGTTATGTTCTGACTAGAGCTCCATGCAGTTGAACCGATGAAATTGAAAGAGCATGGGGAGTATGATGATGAT
GCCATTGATGAGGTGCGTTTATGAACTGATAATTCTGCTTCCAC--TATCTTATGTTGTACAAATCTACACTCCCTCTGT
TCATAAATATAAGATTTTCTAACTTTCTTCTGAATCGGATGTATATGGACACCTTTTAGTGTGTTTGTTCACTCATTCTA
GTTGGTATATAATCTATATTAAAATATACAAAACATCTTATATTTGTGAACGGAGGGATAGTATCAGATTAATGTGCTCA
TCCAAGCACCAAGAAGTGTGGAGGTGTCAGT---TACGACAGAAAATCTTGTACTAGTATATAA-ATTTATGTTTTGTCT
T---------------------------------------------------------------------------GACT
CTTGAGTGCTGCCAGCTTGCCATCACAATGTTCTAGTGCGACAAATCAGAAGCCCCTTTACACTAGGCACTACATCGATT
CGTTGAG-----CAGTAGTTGCAGACTCGCAGAACTTATCT--ACTCATCTACACTAGTATACTCCCATCTACACTAGTA
TACTCCCATCTACACTAGTATACTCCCATCTATTCGTCCAACATGTGAGTAGGTGCTGACTCGCACTACTTATCGGCTCA
GCTTTCCAATTTCACTGCAATGTAGGCATTGCATCTGTTGCCACTCATCTACCTCTATTCTCTAGCATCTTTGGAAAAGA
TTTTACAGTGTTTTTCCAAAGGGACGGAGATATTTACAGTTTCTGCTCTTATGGCCCAGTAACCATTACTTACTGTTGTT
ATACTATTAATAACCACCCAAAATAGTTTAACTGTTTTG-----TGCAATCGTGAACCTTTGTACTGTTCAGGCAAATAA
TTAATGATAGCCTATTCTTCAGTTTCACCCACGTAATTATTGCTTCAACAGTAAGTGACGTGGATCTAACTTACCCTTGT
ATTCTTTACAGACCCAGTAG------------------------------------------------------------
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---------------------------------------------------------------
>chr4A_1_TraesCS4A01G108600
CGTCGCTGCCACTGAATTGCCTCGTCTTCTGGGCCTCAGAGCCATGGAGTCGTTCTTAGGTGTTTTTTTAGTGTTTTTTA
GGGTTTGCGTCCCGCTCAGGAAGGTGAGGCGATAGCGGCTTCTTGAAGATAGAATAAGGTTCTTCCTACTTAGCCCTCGT
CCCAGCGGTGTGTCTCACATTTGTCGGAGGGCGTGTGGAGGTG---CCGGTGGATCTTGCGGGATTTGGTCGGCGCTTGT
CTTTGTTGGGCCTGCGTGGATCTAGCCTTTGTTCTTCTGCGTT--TGTGTGTCTATAGGTTAGATCCTACC---------
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------GATCAATGTTTTTCTTCATCAACGACGGTTGTTGTTTTGGTGCGCTGGTCTTTTGGGGCCTTAACATGACAAAT
TTCCTACTGTCTACTACAACAAGGTGCGCCCCGTTCCGGTGAGGGAGGGGCAATGACAGCGACGCGCTTTCGGCTCGCTC
CAGTGTTTATAGTCGTCGCTTATTGATCTACGAACGCGGATGCATTTTTTGTTACTTT----------------------
--------------------------------------------------------------------------------
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-------------------------------------------TAATGTTTTTTGTACTACCATGATATTTGGTGAATAT
ATCGGAGTTTTTTCTAGTATTAT---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TTTTTATCATCATCAGTGATCATTCATCACA-TTTTTTCAATT
TTT---TTGAAACCACCTTTTTTTTTCATGTGGGGCCTGAATGCCTTTACGCAGCCAAACCGGGCCTGCCAGCCTACTAA
AAGGCCATGTAATCAACGGCCTGACCCAAAAGGTAAATATGGGGCCCAGCGAAACGCCCGCTC---CTCTCGCTCGTCGG
AGCGCCGTCCAGTTCAAAATATTTCAAACTCAACG-CCCCCCCACCGGCCAACGGGCGATTCCCCCATTCCCCACCACCT
CCCCCACTCTCTCCACACTTACCATCTCATATCAGCAGTTTCCTTGAACCCAACACCCCCGCTCCTCCGCATCTTCCGCC
ATTTCCTTCATCCAAACACCGTCCGCTGCTCCATCTCCCGCCCTCCCCTCCC-----CTCCCCGCCGTCGCCATGGATCC
CCACCCCACCCCCTTCCGAGGTAAGATAAGATATCAGCGCCATTCCGCTCTCAACATCCGAGCCCTGCCTCTCGTTTCCG
GGGATTAATTTCTTCGTGGTTTG-------CAGCGAAGCGGAAGTCGGTCGCTGCGCCGGCAAAGACGCCAGCGCCGAAG
CCCAAGTCCGTCGCCAACGGCACCGCGCGCGGGAGAATGACCACCTCCGCCACCACCAGCGCCGTCTCCGCGGGGGCCGC
TCCCCAGCCACGGCAAGGACCGCTGCGGCTCTAGAGTCTCTAGATTTGAC----TGTGTGTATGTAATCCTGTTCGTCTT
GCTTACCGAGGCTAGGTCTGCTGTTTTCAGGCCACGGCGCGCGTTCGGCACCGTCCGGAGCAGCAACTCCCTGGCCGAGA
AGCCGGCCCCGCCGCCGCCGCAGAAGCATTCAAAGCTGTCGCCCCCGCCTCCGCAAAAGCCTCTGAAGGTGTCGCCGCCG
AAGCTGCAGAAGCCTGCGGCAAAGGTATCGCCTCCGCCTCCGCAGAAGCCTGCTAAGGTTTCGCCGCCACCTCAGCAAAA
GCTTTCGAGGCTGTCCCCGCCGGTTCCGGCCAAGGCGGCCAGGCCTTCTCGTCCCGCAGAAAAGCCACTGAAGAAAGCTT
GCCCAGCCCCCCCGGATCTGGCGGCCAAGGCCAAGAAAAAGAGCCAGAGGGTGAGCTTCCAGGATGACGTGGCAGCGCTG
GCTCCCTCCGGAAGCGGGGAGAAGGTCAAAGCATCCACCGAAGACTCTGCTGGGCGCACGCCTATGGTGCCTGTCAAACC
CCTGGAGAAGAAGCCGGCGAAGGTTGTGGCCGCAGAGACCCCGTTCTTCAGCGCTCAGAATTGCAGCAGCTGCACGCTTG
ATCAGCTCGAGTCCGCCTCCTACTGGCTGGCACAGATCCATCTGGCCGAGTCTGTTGGCAAGCACAATGTCTCTGCCGCA
TTCTTCCGCCTTGCATTTGAATGCCAAGCTCAGGTAATAGTTCAAAGCACACTTACGAGTGAACGATTTGATATATTTTC
TGTGTATCCACCTTTT-----TACTGTAAGGAGCATATGAGCATGACATGGATGGTTAGTTTGATTTTCAGTT-------
-----ATGATTAGTACTGTACTTAGTACCAATCCAAGTAGGCTAAGACCGTTCCTTATTTCGGGAATAAGAACATGTTTT
TGTTTTGTTTTGTTTTGTGGGCAGCCATTTCACAGGATCCGAAGTGAGCTCAGGAACTATGTGGCGCGCCATGAGAGTGC
TAGCACTTTGACCCCTTTATTCCATGAGCTCCTGGTTGCCCATGCCATGGCAGTGAACCAACTGAAGTTTGACACTGATG
GGTCTGAAAAGGTGGATACACCTGCAACTACAAATACAGTTGACCAAAAGCTTGATGCTACCACACTGGTGCATGAATGC
TCTGAACGTGATTGTGGTGGTGATCTTGTTGATGTGGGGGAAGTCAGTGTTATCAAACAAGGAGAGGAAGAGATGGACCA
ACCGAGCTTTGAGCAGAAACTGGATGAAAGTTTTGCATTTGATGATTGTGAGGCTGTCATCGTGGACCGGCTAGCTGAAG
AACATTCTGAATTCGAAAAGATTATCGGTGTCAAAGGTCCTTGTGACAGTGAAATAGTCCAGTCAGCATGTCGCTCTTCC
ATCGACAGGCTGAGCTTGAGAGGATCCCCTCTAGCAAGGGGAGCATCTGAAAGACGCCTCTCGTCAGAGAGCCATTTAGA
TAAATTGTCTCCGTCTGCTGCAGGGAGCTTGTCTGCAAAGCGCTTATCATCATCTGGTAGCCCTTTCAACAACTCTCCGT
TCTGCAGGGGCTCGTTACAGAGGCTCACATCCAGTTGCCCTTCTTCTAAGAAGTCCTCCGCTAAAGGCGGCCTGTCTGCA
AAGCGGATGTCATCTGGTGGCCGCTCTGATGAGGAGCATAATAATGGTACTGCTGGAGCTGGTGATTCTAGCAGAGTGAT
TCAAGAAGGGGAATCTGGTTGCCACATTTTAGGTAAGTTAACATGTGCAGAGCTTTTCCTATGACTTGGTCATTGAGAT-
------TAGTTATGTTCTGACTAGAGCTCCATGCAGTTGAACCGATGAAATTGAAAGAGCATGGGGAGTATGATGATGAT
GCCATTGATGAGGTGCGTTTATGAACTGATAATTCTGCTTCCAC--TATCTTATGTTGTACAAATCTACACTCCCTCTGT
TCATAAATATAAGATTTTCTAACTTTCTTCTGAATCGGATGTATATGGACACCTTTTAGTGTGTTTGTTCACTCATTCTA
GTTGGTATATAATCTATATTAAAATATACAAAACATCTTATATTTGTGAACGGAGGGATAGTATCAGATTAATGTGCTCA
TCCAAGCACCAAGAAGTGTGGAGGTGTCAGT---TACGACAGAAAATCTTGTACTAGTATATAA-ATTTATGTTTTGTCT
T---------------------------------------------------------------------------GACT
CTTGAGTGCTGCCAGCTTGCCATCACAATGTTCTAGTGCGACAAATCAGAAGCCCCTTTACACTAGGCACTACATCGATT
CGTTGAG-----CAGTAGTTGCAGACTCGCAGAACTTATCT--ACTCATCTACACTAGTATACTCCCATCTACACTAGTA
TACTCCCATCTACACTAGTATACTCCCATCTATTCGTCCAACATGTGAGTAGGTGCTGACTCGCACTACTTATCGGCTCA
GCTTTCCAATTTCACTGCAATGTAGGCATTGCATCTGTTGCCACTCATCTACCTCTATTCTCTAGCATCTTTGGAAAAGA
TTTTACAGTGTTTTTCCAAAGGGACGGAGATATTTACAGTTTCTGCTCTTATGGCCCAGTAACCATTACTTACTGTTGTT
ATACTATTAATAACCACCCAAAATAGTTTAACTGTTTTG-----TGCAATCGTGAACCTTTGTACTGTTCAGGCAAATAA
TTAATGATAGCCTATTCTTCAGTTTCACCCACGTAATTATTGCTTCAACAGTAAGTGACGTGGATCTAACTTACCCTTGT
ATTCTTTACAGACCCAGTAGCTGCTGGAGATGGAGCCACGACGACCTCAATGAACCGCTAATATAAAGTTACCGTAGTTG
CTGTCTAGTCTAGTTTGATTATGCGTGTGTTGTGTATGCTGTGAGTTAGTTTGCAACTCTCAATTGCTTAGTTTGCTCTG
TTTTTGTGAGCAACGATCATCACGCTCTGATGATCTTTGAGGGGTTTGACAGGTTTAGCGTGTGTGCTGGCTGCGTGG-G
TGACGTGGTGCTTGCTCTTGGTTGATATGGAAATCAACCAAACCTTTTGGATTTCAGACTGTAAGCGGAGCCGAGTTCCG
CCTATGTACG-ACCTTGTGAATGCTATGCCTTTTTTTTGGCGATGGTTATGAATAGTACTCCTGCTA---CGCTTTGCCT
TTTTCTCATGGTATATATCATTATAAAGAAATGCTTGCGATAACCCCAAGACATTTAGTTTGGAACAACTGCAAACTTCT
TGACCTACTCTTTAGTCAGAAATTGGTAGCTTTACATT------------------------------------------
------------------------------------GTATAAATATGATCAGGGTCCAGTTTTAGTGCTTGTATAATTTA
TGCTAGTTAACAGCCATGTTCAGATTCGACTGCTGCTGACCACTATTTTGAGCAGAAAGACTTCCGTTCGTTTGCGACGT
GGAAGGTCTGCAAACAAAAAATACAGCAATAAGCAAGGAAAACAACATATGAGTGGGAAAATATTTGGACGGAGAGACTA
CATGGTCGTCGCCATCGACTGACACGGCACAAGTTGGCGACTCCTCTGGGTCGTGGCAGCCGCACCAGCGTGCCGGTCCG
CCTGGCTCCGAGCTTCCACAGCCGTGGCCCAGCTGATCCAAGTCCACCAGACCACCACCGAGAGCTGCTTCGGTCAGACC
CGAGAAGAATTGGCGGACGCCGTAGGATAGGACGGTCGGGGCACGGTGACGATCGAGAAAGATGTACTACGACGCCGCAT
CTACTCCCTCCATTCCAAATTACTTGTCTTGGATTTATCTAGATACAGATGTACCTAGACTCA
>chr4B_77
----------------------------------------------------------------------------TTTA
GGGTTTGCGTCTTGCTCAAGAAGGTGAGGCGGCGGCGACTTCTTGAAGATAGAATAATGTTCTC---ACCTAGCCCTCAC
CCCAACGGTGCATCTCATATTGTCCGGAGGGTGTGTGGAGGTGTCTTCGGTGGATCTTGTAGGATTTGGTCCGTGCTTGT
CTATGTTGGGTCTGCGTGGATCTAGTCTTTGTTCTTCTACGTTCATC--TGTCCATAGGTTAGATTCTTTC---------
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------GATAAACTTTTTTCTTCATCAACGACGGTTGTTGTTCTGGTGCGCTGGTCTTTTGGGGCCTTAGCATGACAACT
TTTCAACTGTCTACTACAACAAGGTTTGCCCCGTTCCAGTGAGGGAGGGGCAATGACGGCGACGCGTTTTCGGCTCGCTC
CAATGCTTGTAGTCGTCGCTTGCTAGTCTATGAATATGGATGTATTTTTTGTTACTTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TAATGTTCTTTGCACTGCCATGATATTTGATGAATAG
ATCAGACGTTTTTTCTATCAGTTTGTCTAATTCACATCTAGATGTTTTCTAAGGATATCACATCTAAGCTTCCACAAATA
ACGCATCAATAATAAAAAAAAAGCTGAAACAAAAAAATAGACCACAAACATAGTTGACACAAGGGTAGATGTGACATAGT
TATGTATGTGTCCTAGACGGACCCTCCTTTTCTATTATTTTTATCATCATGAGTGATTAGTCATCACCTTTTTTTCATTT
TTT---TTGAAACCACCTTTT-TTTTCATGTGGGGCCTGAATGCCTTTACGCAGCCAAACCGGGCCTGCCAGCCTACTAA
AAGGCCATGTAATCAACGGCCTCACCCAAAAGG-AAGTATCGGGCCCAGCGAAACG-CCCGCTCCTCTCTCGCTCGTGGG
AGCGCCGGCCAGTTCAAAATATTTCAAACTCAACG-TCCCCCCACCGGCCAACGGGCGACTCCCCCGTTCCCCACCACCT
CCCCCACTCTCTCCACACCC-CAATCTCATATCAGCAGTTTCCTTGAATCCAACACCCCCGCTCCTCCGCATCTTCCGCC
ATTTCTTTCATCCAAACACCGTCCGCTGCTCCATCTCCCGCG-----CTCCC-----CTCCCCGCCGTCGCCATGGATCC
CCACCCGACCCCCTTCCGAGGTAAGATAAGAAACCAGCGCCATTCCTCTCTCAACATCCGAGCCCTGCCTCTCGATTTCA
GGGATTAATTTCTTCGTGGTTTACACTTTACAGCGAAGCGGAAGTCGGTCGCTGCGCCGGCAAAGACGCCAGCGCCGAAG
CCCAAGTCCGTCGCCA------CCGCCCGCGGGAAGATGACCACCTCCGCCACCACCAGCGCCGTCTCCGCGGGGGCCGC
TCCCCAGCCACGGCAAGGATCGCTGCGGCTCTAGAGTTTAGATTCGATTGTGTTTGTGTGTATGTAATCCTGTTCGTCTT
GCTTACCGAGGCTAGGTATGCTGTTTTCAGGCCACGACGCGCGTTCGGCACCGTCCGGAGCAGCAACTCCCTGGCCGAGA
AGCCGGCCCCGCCGCCGCCGCAGAAGCATTCAAAGCTGTCGCCCCCGCCCCCGCAAAAGCCTTTGAAGGTGTCGCCGCCG
AAGCTGCAGAAACCTGCTGCAAAGGTGTCACCGCCGCCTCCACAGAAGCCTGCAAAGGTTTCGCCGCCACCTCAGCAGAA
GCCTTCGAAGCTGTCTCCGCCGATTCCGGCCAAGGCGGCTAGGCCTTCTCGTCCCGCAGAGAAGCCACTGAAGAAAGCTT
GCCCAGCCCCCCCGGATCTGGCGGCCAAGGCCAAGAAGAAGAGCCAGAGGGTGAGCTTCCAGGATGACGTGGCAGCGGTG
GCTGCCTCCGGAAGCGGGGAGAAGGTCAAAGCTTCCACCGAAGACTCTGCTGGGCGTACGCCTATGGTGCCTGTCAAAGC
CCTGGAGAAGAAGCCGGCGAAGGTTGTGGTCGCAGAGACCCCGTTCTTTAGCGCTCAGAATTGCAGCAGTTGCACGCTTG
ATCAGCTCGAGTCCGCCTCCTACTGGTTGGCACAGATCCATCTGGCCGAGTCTGTTGGCAAGCACAATGTCTCTGCGGCA
TTCTTCCGCCTTGCATTTGAATGCCAAGCTCAGGTAATAGTTCAAAGCACACTTACGAGCGAACGATTTGATATATTTTC
TGCGTATCTGCTCTAGTAGCCTACTGTAAGGAGCATATGAGCATGACATGAATGGTTAGTTTGATTTTCAGTTCACAGTG
GCTGCATGATTAGTACTGCACTTAGTACCAATCCAAGTAGGCTAAGACCGTTCCTTATTTCGGGAATAAGAACATGTTTT
TTG------------TGTGTGCAGCCATTTCACAGGATCCGAAGTGAGCTCAGGAACTATGTGGTGCGCCATGAGAGTGC
TAGTACTTTGACCCCTTTATTCCATGAGCTCCTGGTTGCCCATGCCATGGCAGCGAACCAACTGAAGTTTGACACTGATG
GTTCTGAAAAGGTGGATACACCTGCAACTACAAATACAGTTGACCAAAAGCTCGATGCTACCACACTGGTGCATGAATGC
TCTGAACGTGATTGTGGTGGTGACCTTGTTGATGTGGGGGAAGTCAGTGTTATCAAACAAGGAGAGGAAGAGATGGACCA
ACCTAGCTTTGAGCAGAAACTGGATGAAAGTTTTGCATTTGATGATTGTGAGGCTGTCATCGTGGACCGGCTAGCGGAAG
AACATTCTGAATTCGAAAAGATTATCGGTGTCAAAGGTCCTTGTGACAGTGAAATAGTCCAGTCAGCATGCCGCTCTTCC
ATCGACAGGCTGAGCTTGAGAGGATCCCCTCTAGCAAGGGGAGCATCTGAAAGACGCCTCTCGTCAGAGAGCCATTTAGA
TAAATTGTCTCCGT---CTGCAGGGAGCTTGTCTGCAAAGCGCTTATCATCATCTGGTAGCCCTTTCAACAACTCTCCAT
TCTGCAGGGGCTCATTACAGAGGCTCACATCCAGTTGCCCTTCTTCTAAGAAGTCCTCTGCTAAAGGCGGCCTGTCCTCA
AAGCGGATGTCATCTGGTGCCTGCTCTGATGGGGAGCCTATTGA---TACTGCTGGAGCTGGTGATTCTAGCAGAGTGAT
TCAGGAAGGGGAAGCTGGTTGCCATGCTACAGGTATGTTAACATGTGCAGAGCTTTTCCTTTGACTTGGTCATTAAAAGA
TTATACTAGTTATGTTCTGACTAGAGCTCCATGCAGTTGAACCGATGAAATTGAAAGAGCATGGGGAGTATGATGATGCT
GCCACTGATGAGGTGCGTTTATGAACTGATAATTCTGCTCCAAATATATCTTCTGTTGTATCAAAGCTAATGACATAGTA
GCTTCGTCCTTACAT-----------------------------------------------------------------
--------------------------------------------------------------------TTGATGTGCTCA
TCCAAGCAGCAAG---TGTGGAGACGTCAGTTAGTACGACAGAAAATCTTGTACTCCCTCCTTACATTTATGTGTTATCT
T---------------------------------------------------------------------------GACT
CTTGAGTGCTGCCAGCTTGCCGTCACAATGTTCTAGTGCGACAAATCACATGCCTCTTTACACTAGGCACTACGTTGATT
CGTTGAGCATACCAGTAGTTGCAGACTCGCAGAACATATATCCAC--------ACTAGTATACT----------------
-------------------------CCATGTATTCGTCCAACATGTGAGTAGGTGCTGACTCGCACTACTTATCGGCTCA
GCTTTCGGATTTCACAGCAATATAGGCATTGCATCTGTTGCCACTCGTCTACCACTAGTTTCTAGCATCTTTGGAAAAGA
TTTTACAGTGTTCTTCCAAA-GGACGGAGATATTTACAGTTTCTGCTCTTATGGCCCAGTCACAA----TTACTGTTGT-
-TATTATTCATAATCAGCCAAAATAGTTTAACCGTGTTCTCTTATGCAATCGTGAACCTTGGTACTGTTCAGGCAAATAA
TTAATGACAGTCTATGTTTCAGTTTCACCCACGTAATTATTGCTTCAACAGTAAGTGACGTGGAGCTAACTTACCCTTGC
ATTCTTTACAGACCCAGTAGCTGCTGGAGATGGAGCCACGACGACCTCAATGAACCGCTAATATAAAGTTACCGTAGATG
CTATCTAGTCTAGTTTGATTATGCGTGTGTTGTGTGTGCTGTGAGTTAGTTTGCAACTCTCAATTGCTTAGTTTGCTCTG
TTTTTGTGAGCAACGATCATCACGCTCTGATGATCTTTGATGGGCTTGACAGGTTTAGCGCGTGTGCTGGCTGCGTGAAG
TGATGTGGTGCTTGCTCTTGGTTGATACCGAAATCAATCAAACCTTTTGGATTTCAGATTGTAAGCGGAGCGGAGTTCCG
CCTATGTATGAACCTTGTGAATACTAGTA-----------------------------------CTA---TGCTTTGCCT
TCTTCTCACTTAGTTTATCATTATAAAGAAATGGTTGTGATAACCCCAAGACATTTAGTTTGGAACAAGTGCAAACTTCT
TGACCTACTTTTTAGTCAGAAATGGGTACTAG------------------------------------------------
---------------------CTAGTTTTAATACTGGTATAAAGATGATC----------------------ATAATTTA
TGCTAGTTAACCGCTATGTTCAGATTCGACTGCTGC------------TGAGCAGAAAGACTTGCGTTCGCTTGCGACGT
GGAAGGTCTGCAAACAAAAAATACAGCAAGAAGCAAGGAAAACAACATACGAGTTTAAAAATATTTGGACGGAAGAG---
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr4D_77
----------------------------------------------------------------------------TTTA
GGGTGTGCGTCCTACTTAGAAAGGTGAGGCGACATCGGCTTCTTGAAGATAGAATAACGTTCTCCCTACCCAGTCCTCGT
CCCAGCGGTGCGTCTCACATTGTC-GGAGGGCGTGTGGAGGTGTCTCCGGTGGATCTTGCGGGATTTGGTCTGCACTTGT
CTTTGTTGGGCATGCGTGGATCTAGCCTTTGTTCTTCTGCGGTCGTGTATCTATATAGGTTATACCCTAGCTTGTACAGG
ATTGTCAGACATAAATTTGTTACAATCAAACAAGTTCTGGGCCAAGTAAACCCTGATATTTCTTTTCGTAGGGATCTGCT
AGGACCTCGTTTGGCAGCATGGAATGAATTACTCATCCGTTTGGAGGTGATTCAGCTGTCGGATGAATCGGATATTTTTC
GATGGAAATTGCATCAGAATGGCAAGTTTTCAGTCAAGTCCATGTATGATGCTCTGGTTCATAATGAGGTTCCAGTTGAG
AACAAAAAATTGTGGAAGCTCAAAATTCCCCTAAGAGTGAAGATATTCCTCTGGTTTCTTAATAAAGGGTCATCTTAACT
AGGGATAATTTGGCACGGCGTAACTGGCAAGGGAGTAAAAAATGTGTCTTCTGCCAACATGACGAGTCTATTACACACTT
ATTTTTTGAGTGTAAGTTTGCTCGGTCTGTGTGGGCCGTTGTTCAAATAACTTTAAATCTTTACCCACCACGTAGTGCAT
GGAACATATTCGGCAATTGGTTGAGGGGAATTGATAAACAATTTTCTGCATACATTCTAGTGGGGCGGCTGCCTTATGTT
GGGCATTGTGGCTGACCAGGAATGATGTAGTTTTTAACAATAAATGTGTTTCATCTCCTGTGCAGGTTATTCATGTATGT
TCGCGATGGCTCCGTACTTGGTCTATCCTGCAGAGGCCGGAGGACATGGACCTTTTTATGATGGCGTCTACACGGCTGGA
GCGTACGGCCAGGGAGGTTTTCTACCCCCATGGATGGCGGTGTGATCTTCAGATAGGATCTGCCGCGTCCTAGGCTGGCT
TATGATTTTTTCTTAGTTGCTTTTCAAATTTGTCCTTCTTTGGACTTGTGGACTTGTTGGCCGTGTGCATCTAGTTATGC
AGAGGCCGGGCGTTCTTTCGATGCGATTTTATCACCTCAATATTTCAATTCAATGAAATGCCCTTTATCGAAAAAAAGAT
CCTTCTGATCAACATTTTTCTTCATCAACGACGGTTGTTGTTCTGGTGCGCTGGTTTTTTGGGGCCTTAGCATGACAACT
TTCGTAGTGTCTAGTACAACAAGGTTTGCCCCGCTCCAGTGAGGGAGAGGCAATAATGGCGGCGCGTTTTCGGTTCGCTC
TAGTGCTTGTAGTCGTCGCTTGCTGGTCTACGAACTTGGATGTATTTTTTGTTACTTTTACGGTAATGATAACTCCCGAA
CGTTCAGGAGTTAAGCATGGCAACCCGAACGGGTTTAGATGGCAAGTTTAGTTTGCGTGAGATTAGGGAAACATGGCAAT
TTTCTGACAAAAAAACGAAAAAGGACAAAGTTGCGATCCCTATGAACTAAAGTTTCCATGCAAAAACGTTCGGGACGAAA
TGCTCAAAATCCGAACGTTCGGGAGTTATTGGATTCCTACTTTTAATGTTCTTTGTACTGCCATGATATTTGATGAATAT
ATTGGACGT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTTTCTATTATTTTTATCATCATCAGTGATCAGTCATCACC-TTTTTTCAAAA
AAAAAATTGAAACCACCTTTT-TTTTCATGTGGGGCCTGAAT-CCTTTACGCAGCCAAACCGGGCCTGCCAGCCGACTAA
AAGGCCATGTAGTCAACGGCCTCACCCAAAAGGTAAATATCGGGCCCAGCGAAGCGCCCCGCTCCTCTCTCGCTCGTGGG
AGCGCCGGCCAGTTCAAAATATTTCAAACTCAATGTCCCCCCCACCGGCCAACGGGCGACTCCCCCAGTCCCCACCACCT
CCCCCACTTTCTCCACACTC-CCATCTCATATCAGCAGTTTCCTTGAATCCAACACCCCCGCTCCTCCGCATCTTCCGCC
ATTTCCTTCATCCAAACACCGTCCGCTGCTCCATCTCCCGCG-----CTCCCCTCCTCTCCCCGCCGTCGCCATGGATCC
CCACCCCACCCCCTTCCGAGGTAAGATAAGAAACCGGCGCCATTCCGCTCTCAACATCCGAGTCCTGCCTCTCGTTTCCG
GGGATTAATTTCTTCGTGGTTTACACTTTACAGCGAAGCGGAAGTCGGTTGCTGCGCCGGCAAAGACGCCAGCGCCGAAG
CCCAAGTCCGTCAC------CACCGCGCGCGGGAAAATGACCACCTCCGCCACCACCAGCGCCGTCTCCGGCGGGGCTGC
TCCCCAGCCACGGCAAGGATCGCTGCGGCTCCGGAATCTCTAGATTTGTT----TGCGTGTGACT----CTGTTCATTTT
GCTTACCTAT----GGCCTGCTGTTTCTAGGCCACGGCGCGCGTTCGGCACTGTCCGGAGCAGCAACCCCCTGGCCGAGA
AGCCGGCCCCGCCGCCGCCGCAGAAGCATTCAAAGCTGTCGCCCCCGCCCCCGCAAAAGCCTTTGAAGGTGTCGCCGCCG
AAGCTGCAGAAGCCTGCGGCAAAGTTGTCGCCTCCGCCTCCGCAGAAGCCTGCCAAGGTTTCGCCGCCACCTCAGCAGAA
GCCCTCGAAGCTGTCTCCGCCGATTCCGGCCAAGGCGGCCAGGCCTTCTCGTCCCGCAGAAAAGCCACTGAAGAAAGCTT
GCCCAGCGCCCCCGGATCTGGCGGCCAAGGCCAAGAAGAAGAGCCAGAGGGTGAGCTTCCAGGATGACGTGGCAGCGCTG
GCTGTCCCCGGAAGCGGGGAGAAGGTCAAAG---CCACCGAAGACTCTGCTGGGCGCACGCCTATGGTGCCTGTCAAAGC
CCTGGAGAAGAAGCCGGCGAAGGTTGTGGCCGCAGAGACCCCGTTCTTCAGCGCTCAGAATTGCAGCAGCTGCACGCTTG
ATCAGCTCGAGTCCGCCTCCTACTGGCTGGCACAGATCCACCTGGCCGAGTCTGTTGGCAAGCACAATGTCTCTGCGGCA
TTCTTCCGCCTTGCATTTGAATGCCAAGCTCAGGTAATAGTTCAAAGTACACTTACGAGTGAACGATTTGATATATTTTC
TGTGTATCTGCTCTAGTAGCCTACTGTTAGGAGCATATGAGCATGACATGAATGGTTAGTTTGATTTTCAGTTCACAGTG
GCTGCATGATTAGTACTGTACTTAGTACCAATCCAAGTAGGCTAAGACCGTTCCTTATTTCGGGAATAAGAACATGTTTT
TTTTTCGTT----------GGCAGCCATTTCACAGGATCCGAAGTGAGCTCAGGAACTATGTGGTGCGCCATGAGAGTGC
TAGCACTTTGACCCCTTTATTCCATGAGCTCCTGGTTGCCCATGCCATGGCAGTGAACCAACTAAAGTTTGACACTGATG
GTTCTGAAAGGGTGGATACACCTGCAACTACAAATACAGTTGATCAAAAGCTCGATGCTACCACACTGGTGCATGAATGC
TCTGAACGTGATTGTGGTGGTGATCTTGTTGATGTGGGGGAAGTCAGTGTTATCAAACAAGGAGAGGAAGAGATGGACCA
ACCGAGCTTTGAGCAGAAACTGGATGCAAGTTTTGCATTTGATGATTGTGAGGCTGTCATCGTGGACCGGCTAGCGGAAG
AACATTCTGAATTCGAAAAGATTATCGGTGTCAAAGGTCCTTGTGACAGTGAAACAGTCCAGTCAGCTTGTCGCTCTTCC
ATCGACAGGCTGAGCTTGAGAGGACCCCCTCTAGCAAGGGGAGCATCTGAAAGACGCCTCTCGTCAGAGAGCCATTTAGA
TAAATTGTCTCCGT---CTGCAGGGAGCTTGTCTGCAAAGCGATCATCATCATCTGGTAGCCCTTTCAACAACTCTCCGT
TCTGCCGGGGCTCATTACAGAGGCTCACATCCAGTTGCCCTTCTTCTAAGAAGTCCTCCGCTAAAGGCGGCCTGTCCTCA
AAGCGGATGTCATCTGGTGGCTGCTCTGATGGGGAGCCTATTGA---TACTGCTGGAGCTGGTGATTCTAGCAGAGTGAT
TGAGGAAGGGGAAGCTGGTTGTCATGCTACAGGTATGTTAACATGTGCAGAGCTG-------------------------
-----------------------------CATGCAGTTGAACCGATGAAATTGAAAGAGCATGGCGATTATGATGATGCT
GCCATTGGTGAGGTGCGTTTATGAACTGATAATTCTGCTCCAAATATATCTTCTGTTGTATCAAAGCTAATGACA---TA
GCTTCGTCCTTACAT-----------------------------------------------------------------
--------------------------------------------------------------------TTGATGTGCTCA
TCCAAGCACCAAG---TGTGGAGACGTCAGT---TACGACAGAAAATCTTGTACTCCCTCCGTATCCACAATAAGTGTTG
CAGTTTTAAACTAAGATTAGTTCAATTATAGTTCAAAACTGTGACACTTATTATGAACGGAAGGGAGTAGTATATAGACT
CTTGAGTGCTGCCAGCTTGCCGTCACAATGTTCTAGTGCGACAAATCACATGCCTCTTTACACTAGGCACTACGCTGATT
CGTTGAGCATACCAGTAGTTGCAGACTCGCAGAACTTATCT--AC--------ACTAGTATACT----------------
-------------------------CCATGTATTCGTCCAACATGTGAGTAGGTGCTGACTCGCACTACTTATCGGCTCA
GCTTTCGGATTTCACAGCAATATAGGCATTACATCTGTTGCCACTCGTCTACCTCTAGTTTCTAGCATCTTTGGAAAAGA
TTTTACAGTGTTTTTCCAAA-GGACGGAGATATTTACAGTTTCTGCTCTTATGGCCCAGTAACAA----TTACTGTTGT-
-TATTATTCATAATCAGCCAAAATAGTTTAACTGTGTTCTCTTATGCAATCGTGAACCTTGGTACTGTTCAGGCAAATAA
TTAGTGACAGTCTATGTTTCAGTTTCACCCACGTAATTATTGCTTCAACAGTAAGTGACGTGGAGCTAACTTACCCTTGT
ATTCTTTACAGACCCAGTAGCTGCTGGAGATGGAGCCACGACGACCTCAATGAACCGCTAATATAAAGTTACCGTAGATG
CTGTCTAGTCTAGTTTGATTATGCGTGTGTTGTGTATGCTGTGAGTTAGTTTGCAACTCTCAATTGCTTAGTTTGCTCTG
TTTTTGTGAGCAACGATCATCACGCTCTGATGATCTTTGAGGGGCTTGACAGGTTTAGCGTGTGTGCTGGCTGCGTGAAG
TGATGTGGTGCTTGCTCTTGGTTGATACGGAAATCAACCAAACCTTTTGGATTTCAGATTGTAAGCGGAGCGGAGTTCCG
CCTATGTATG-ACCTTGTGAATACTAGTA-----------------------------------CTACTATGCTTTGCCT
TCTTCTCATTTAGTATATCATTATAAAGAAATGGTTGTGATAACCCCAAGACATTTAGTTTGGAACAAGTGCGAACTTCT
TGACCTACTTTTTAGTCAGAAATTGGTAGCTACTCCTTCCGTCCGAAAAAAATTTGTTCCTCAAATGAATGTATTTAGCA
TTAAGCAGAAATTGGTAGCTACTAGTTTTGATACTGGTATAAAGATGATC----------------------ATAGTTTA
TGCTAGTTAACCGCTATGTTCAGATTCGACTGCTGCTGACCACTATTTTGAGCAGAAAGACTTGCGTTCGTTTGCGACGT
GGAAGGTCTGCAAACAAAAAATACAGCAAGAAGCAAGGAAAACAATATATGAGTGAAAAAATATTTGGACGGAAGAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------S-------------------S------------------------S-----S-----S----------
----------S----------SSS-----------------------------------------------S--------
------------------------------------------------S--------------------S----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SS----------------------------S--------------------------S--------S-
-------------------------SS----------S-------------------S--------S-------------
-----S--S------------SS--S---------SS-----S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S--------S------------S-------
------SS-----SSSS-SSSS----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S-------S------------
---------------------S----------------------------------------------------------
----------------------S-----------------S------------------SSSS--------------S--
-------S---------------------------------------------------S--------------------
-------------------SS---------------------------S-------------------------------
-----------------------------------------SSSSSS---------------------------------
-------------------------------S-S----------------------------------------------
----------------------S---------------------------------------------------------
----------------SSSS--------------S---------------------------------------------
-------------------S----------------------------SS------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------S-----------------
--------------------------S--------------------------S-----------------------S--
--S-----S------S------S---------------------------------------------------------
-------------------------------------S------------------------------------------
---S----------------------------S---------------------------------------------S-
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------SS-SS-SS----------------------------------S-----------------------------
--------------------------------------------------------------------------------
-S---S---SSSSSS-------------------------------------------------S---------------
--------------------------------------------------------------------------------
-S--------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------SSS---------------------------------------------------------------
-------------S--------------------------------------------------------------SS--
---------------------S---------S-----S--S-S-SSS---------------------------------
---S---------S----------SSS-SS-----S------------------------S-------------S-S-S-
------------------------------------------------------------------------------S-
---------------------------------------S-S-S--------S-------SS--SSSSS-SSS-S-SSSS
S-S-SSSSS-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------
-------------SSS-------SS------------------------------SSSSSS-S----------S------
--------------------------------------------------------------------------------
---------------------S--------------------------S-S---S------------------S-S----
---------------------------------------------SSSSSSSS-----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS----S--------------------------------------------------
------SS-------S-----S------------------------S----------S-S--------------------
--------------------S------------------------------------------S-SSSS----------S
S--S----S----S--S------------------S--S---------------------S-------------------
-------S--S----SS-----------------------------------------------S---------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------S--------------------------------S--
---S-----------------------S------------------------------S------------S--------
--------S-------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------
-S-------SSSS--------------------S---S------------------------------S-----------
---------S---------------------SSS-S--------------------------------------------
-------------------------------------------S------SSSSSSSSSSSSSSSSSSSSSS--------
-----------S--S------------------------------------------------S----------------
-----------------------------S-------------------------SS----------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2103
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---GCCATGTAATCAACGGCCTG---------------------------------------------------------
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>reverse_3614
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-------------TTTGTGGGCAGCCATTTCAC-----------------------------------------------
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>forward_3357
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---------------------------------------------------------GCAAGCACAATGTCTCTGCC---
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>reverse_4363
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------------------------------------------AATGGTACTGCTGGAGCTGG------------------
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>forward_3665
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--------------------------------------------TGAGCTCAGGAACTATGTGGC---------------
--------------------------------------------------------------------------------
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>reverse_4559
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------------------------------------------------------------------------------AT
GCCATTGATGAGGTGCGT--------------------------------------------------------------
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>forward_4342
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---CGGATGTCATCTGGTGGCC----------------------------------------------------------
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>reverse_6348
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---------------------------CACAAGTTGGCGACTCCTCT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
