CLUSTAL X (1.81) multiple sequence alignment input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CGAGGTGTCGCCACGGAGGAGCAGGTGGGCTATGGCGAAGCTCGCCTACG chr6B_1 CGAGGTGTCGCCACGGAGGAGCAGGTGGGCTGTGGCGAAGCTCGCCTCCG chr6B_1 CGAGGTGTCGCCACAGAGGAGCAGGTGGGCTGTGGCGAAGCTCGGCTCCG chr6D_1 CGAGGTGTCACCACGGAGGAGTAGGTGGGCGGCGACGAAGCTCGCCTCCG chr6D_1 CGAGGTGTCGCCACGGAGGAGCAGGTGGGCGGCGGCGAAGCATGCCTCCG chrUn_1 CGAGGTGTCGCCACGGAGGAGCAGGTGGGCTATGGCGAAGCTCGCCTACG chrUn_1 CGAGGTGTCGCCACGGAGGAGCAGGTGGGCTATGGCGAAGCTCGCCTACG chr6A_1 CGAGGTGTCGCCACAGAGGAGCAGGTGGGTAGCGGCGAAGCTCGCCTCCG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CAACGCAGGTAAGCAGTGGCGGCGCAAAATGGAAGCCGCGGGGCAGGTGG chr6B_1 CAACGCAGGTAAGCAGGGCGGGCGCAAAATGGAAGCCGCGGGGCAGGTGG chr6B_1 CAACGCAGGTAAGCAGAGGCGGTGCAAGATGGAAACCGCGGGGCAGGTGG chr6D_1 CAGCGCAGGTAAGCAGGGGTGGCGCAAGATGGAAGCCGCAAGGCAGGTGG chr6D_1 CAGCGCAGGTAAGCAGGGGTGGCGCAAGATAGAAGCCGCGGGGTAGGTGG chrUn_1 CAACGCAGGTAAGCAGTGGCGGCGCAAAATGGAAGCC-CGGGGCAGGTGG chrUn_1 CAACGCAGGTAAGCAGTGGCGGCGCAAAATGGAAGCC-CGGGGCAGGTGG chr6A_1 TAGGGCAGGTAAGCAGGGGTGGCACAAGATGGAAGCCGCGGGGCAGGTGG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ACGGCCGCGCAAGTGGGAATTTGTCGCCGACTGATCCCTGCGGCGGCTGG chr6B_1 ACGGCCGCGCAGGTGGGAATTTGTCGCCGACTGATCCCTACGGCGGCTGG chr6B_1 ACGGCCGCGCAAGTGGGAATTTGTCACAGACTGATCCCTACGGCGGCT-- chr6D_1 GCGGCGGCGCAAGTGGGACTTTGTCGCCGGCTGATCCCTACGGGGGCTGG chr6D_1 GAGGCGGCGCAAGTGGGACTTTGTTGCCGGCTGATCCCTACGGCGACCAG chrUn_1 ATGGCCGCGCAAGTGGGAATTTGTCGCCGACTGATCCCTGCGGCGGCTGG chrUn_1 ATGGCCGCGCAAGTGGGAATTTGTCGCCGACTGATCCCTGCGGCGGCTGG chr6A_1 GAGGTGGCGCAAGTGAGACTTTGTTGCCGGCTGATCCCTACGGCGACCAG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GGCACGCGGTGCCAGCCGGCGATGGGGGGAGACGGAGGCTAGGGCGCGCG chr6B_1 GGCATGTGGTGCCAGCCGGCGACGGGGGGAGACGGAGGCTGGGGCGCGCG chr6B_1 -------------------------------------------------- chr6D_1 GGTACGCGATGCCCGCTGGCAACAGGGGGAGACGGAGGCTGGGGCGCGCG chr6D_1 GGCACGCGGTTCTCGCCGGCGACGGGGGGAGACGGAGGCTGGGGCGTGCG chrUn_1 GGCACGCGGTGCCAGCCGGCGACGGGGGGAGACGGAGGCTGGGGCGCGCG chrUn_1 GGCACGCGGTGCCAGCCGGCGACGGGGGGAGACGGAGGCTGGGGCGCGCG chr6A_1 GGCACGCGGTTCTTGCCGACGACGGGGGGAGACGGAGGCTGGGGCATGCG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ----------------------S-----------------S--------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GTGCCCGCAGGCGTCAGGGGAGGAAGAAGGGCTGATTAGCACGAGATTTA chr6B_1 GTGCCCGCAGGCGTTAGGGGAGGAAGAAGGGCTGATTAGCACAACATTTA chr6B_1 -----------------------AAGAAGGGCTGATTAGCACGAGATTTA chr6D_1 GTGCCCGCAGGCTTCGAGGGAGGAAGAAGGGTTGATTAGCACGAGATTTA chr6D_1 GTGCCCGCAGGTGTCAGGGGAGGAAGAAGGGTTGATTAGCATGAGATTTA chrUn_1 GTGCCCGCAGGCGTCAGGGGAGGAAGAAGGGCTGATTAGCACGAGATTTA chrUn_1 GTGCCCGCAGGCGTCAGGGGAGGAAGAAGGGATGATTAGCACGAGATTTA chr6A_1 GTGCCCGCAGGCGTCAGGGGAGGAAGAAGGGTTGATTAGCACGAGATTTA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 AAATCTTATG---TTTTTTTTGCAAAATTACAATTGAACTAAGCTGGTTA chr6B_1 AAATTATATGTTTTTTTTTTTGCAAAATTACAATTGAACTAAGCTGGTGA chr6B_1 AAATGATATTA---TTTTTTTGCAAAATTACAATTGAACTAAGCTAGTGA chr6D_1 AAATGATAC----TTTTTTTTGCAAAAATACAATTGAACTAAGCTGGTGA chr6D_1 AAATGATAAG---TTTTTTTTGTAAAATTACAGTTGAACTAAGCTGGTGA chrUn_1 AAATCTTATG---TTTTTTTTGCAAAATTACAATTGAACTAAGCTGGTTA chrUn_1 AAATCTTATG---TTTTTTTTGCAAAATTACAATTGAACTAAGCTGGTTA chr6A_1 AAATGATAAG---TTTTTTTTGTAAAATTACAGTTGAACTAAGCTGGTGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CATGTTTTCCCGGATGGAGGGAGTACTATTTAATTATGTCGCATTGAGCT chr6B_1 CATGTTTTCCCGGATGGAGGGAGTACTATTTAATTATGTCGCATTGAGCT chr6B_1 TATGTTTTCCCGGATGGAGGGAGTACTATTTAGTTATGTCGCAGTGAGCT chr6D_1 CATGTTTTCCCGGACGGAGGGAGTATTGTTTAATTATGTCGCACTAAGCT chr6D_1 CATGTTTTCCCGGACAAAGGGAGTACTGTTTAATTATGTTGCAGTGAGCT chrUn_1 CATGTTTTCCCGGATGGAGGGAGTACTATTTAATTATGTCGCATTGAGCT chrUn_1 CATGTTTTCCCGGATGGAGGGAGTACTATTTAATTATGTCGCATTGAGCT chr6A_1 CATGTTTTCCCGGACGGAGGGAGTACTGTTTAATTATGTTGCAGTGAGCC chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GAAATGATAG-TTTTTTTGCCGA-GGACACAGAAATGCATATTTTCACAA chr6B_1 GAAATGATAG-TTTTTTTGCCGA-GGACACAGAAATGCATATTTTCACAA chr6B_1 GAAATGATAG-TTTTTTTTGCCTGGGACACATAAATGCATATTTTCACAA chr6D_1 GAAATAATAG-TTTTTTTGCTGA-GGACACATAAATGCATATTTTCACAA chr6D_1 GAAATAATAGTTTTTTTTGCCGA-GGACACATAAATGCATATTTTTAGAA chrUn_1 GAAATGATAG-TTTTTTTGCCGA-GGACACAGAAATGCATATTTTCACAA chrUn_1 GAAATGATAG-TTTTTTTGCCGA-GGACACAGAAATGCATATTTTCACAA chr6A_1 GAAATAATAG-TTTTTTTGCCGA-GGACACATAAATGCATATTTTCATAA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TCACACCGTTGGATCATC--------TT---------GTAGCGGTGCTCC chr6B_1 TCACACCATTGGATCATC--------TT---------GTAGCGGTGCTCC chr6B_1 TGACACCGTTGGATCATCTTGTTACATT---------GTAGTGGTGCTCC chr6D_1 TCACACCGTTGGATCATC--------TT-CTTACATTGTAGTGGTGCTCC chr6D_1 TCACACTGTTGGATCATCT-------TT-GTTACATTTTAGTGGTGCTCC chrUn_1 TCACACCGTTGGATCATC--------TT---------GTAGCGGTGCTCC chrUn_1 TCACACCGTTGGATCATC--------TT---------GTAGCGGTGCTCC chr6A_1 TCACACAGTTGGATCATC--------TTTGTTACATTGTAGTGGTGCTCC chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ACTATTGATTTC-AAAAAA-TATTATAACATTTACACCGTAAGAAGCTTA chr6B_1 ACTATTTATTTC-AAAAAA-TATTATAACATTTACACCGTAAGAAGCTTA chr6B_1 ACTATTTATTTC-AAAAAA-TATTATAGCATTTACACCGGAAGAAGCTTA chr6D_1 ACTATTTATTTC-AAAAAC-TATTATAACATTTACACCATATGAAGCTTA chr6D_1 ACTATTTATTTC-AAAAAAATATTATAACATTTACACCGTAAGAAGCTTA chrUn_1 ACTATTGATTTC-AAAAAT-TATTATAACATTTACACCGTAAGAAGCTTA chrUn_1 ACTATTGATTTC-AAAAAA-TATTATAACATTTACACCGTAAGAAGCTTA chr6A_1 ACGATTTATTTCAAAAAAA-TATTAAAACATTTACACCGTAAGAAGCTTA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GCAAGTGTTAACTAGTTCTATGGCAAGCTATGATAGACACAGTTTTACTA chr6B_1 GCGAGTGTTAACTGGTTCTATGGCAAGCTATGATAGACGCAATTTTACTA chr6B_1 GCGAGTGTTAACTAGTTCTGTGGCAAGCTATGATAGATGCAGTTTTACTA chr6D_1 GCGAGTGTTAACTAGTTCTGTGGCAAGCTATGATAGACACAATTTTACTA chr6D_1 GCGAGTGTTAACAAGTTCTATGGCAAGCTATGATAGACGCACTTTTACTA chrUn_1 GCAAGTGTTAACTAGTTCTATGGCAAGCTATGATAGACACAGTTTTACTA chrUn_1 GCAAGTGTTAACTAGTTCTATGGCAAGCTATGATAGACACAGTTTTACTA chr6A_1 GTGAGTGTTAACATGTTCTCTGGCAAGCTATGATAGACACACNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TATATATACA--TACATATATATGG------------------------- chr6B_1 TATATATATACGTACATATATATGG------------------------- chr6B_1 TATATATACA--TACATATATATAG------------------------- chr6D_1 TATATATACA--TACATATATATGG------------------------- chr6D_1 TATATATATA--CACATATATATGG------------------------- chrUn_1 TATATATACA--TACATATATATGG------------------------- chrUn_1 TATATATACA--TACATATATATGG------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ---------------------------GTAGATGGGCAAGGTTGTAAAGA chr6B_1 ---------------------------GTAGATAGGCAAGGTTGTAAAGA chr6B_1 ---------------------------GTAGATAGGCAAGGTTGTAAAGA chr6D_1 ---------------------------GTAGAGAGGCAAGGTTGTAAAGA chr6D_1 ---------------------------GTAGAGAGGCAAGGTTGTAAACA chrUn_1 ---------------------------GTAGATAGGCAAGGTTGTAAAGA chrUn_1 ---------------------------GTAGATAGGCAAGGTTGTAAAGA chr6A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGAAAGGCAAGGTGGTAAAGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ---------------------------------S---------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GGAGCGGACCCGGAAAGATTTCCTTAGAATAGATTGGAGATTACAATTTA chr6B_1 GGAGTGAACCCGGAAAGATTGCCTTAGAATAGATTGGAGATTACAATTTA chr6B_1 GGAGCGGACCCGGAAAGATTGCCTTAGAATAGATTGGAGATTACAATTTA chr6D_1 GGAGCGGACTCAGAAAGATTGCCTTAGAATAGATTTGAGATTACAATTTA chr6D_1 GGAGCAGACCCAGAAAGATTGCCTTAGAATAGATTGGAGATTACAATTTA chrUn_1 GGAGCGGACCCGGAAAGATTGCCTTAGAATAGATTGGAGATTACAATTTA chrUn_1 GGAGCGGACCCGGAAAGATTGCCTTAGAATAGATTGGAGATTACAATTTA chr6A_1 GGAGCAGACCCAGAAAGATTGCCTTAGAATAGATTGGAGATTACAATTTA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs --------------------S----------------------------- forward_971 -GAGCGGACCCGGAAAGATTT----------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 AGGCAACAAATCAATTATATTAATACTTT-CCCTATCAAACTTGGCACTT chr6B_1 AGGCAACAAATCAATTATATTAATACTTT-CCCTATCAAACTTGGCACTT chr6B_1 AGGCAACAAATCAATTATATTAATACTTT-CCCTATCAAACTTGGCACTT chr6D_1 AGGCAACAAATCAATTATATTAATACTTT-CCCTATCAAACTTGGCACTT chr6D_1 AGGCAACAAATCAATTATACTAATACTTT-CC-TATAAAACTTGGCACTT chrUn_1 AGGCAACAAATCAATTATATTAATACTTTCCC-TATCAAACTTGGCACTT chrUn_1 AGGCAACAAATCAATTATATTAATACTTTCCC-TATCAAACTTGGCACTT chr6A_1 AGGCAACAAATCAATTATATTAATACTTTCCC-TATCAAACTTGGCACTT chr6D_624 -GGCAATAAATTAATCCTGTTAACACTTTCCG-TATCAAACTTGGAACTT chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTATATCGCATTA chr6B_1 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTATATCGCATTA chr6B_1 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTACATCGCATTA chr6D_1 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTATATCGCATTA chr6D_1 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTATATCGCACTA chrUn_1 GTGAAGATTTTTCTATGCATTAGACACATCACATCCTTTATATCGCATTA chrUn_1 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTATATCGCATTA chr6A_1 GTGAAGATTTTTCTATGCATTAAACACATCACATCCTTTATATCGCACTA chr6D_624 GTGAAGATTTTCCTATGCATCAAACACATCACATCATTTATATGGCATTA chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ACACAATAGATTTTGTACAAAAGATAAGGATGATCATATCTTATGGCATT chr6B_1 ACACAATAGATTTTGTACAAAAGATAAGGATGATCATATCTTATGGCATT chr6B_1 ACACAATAGATTTTGTACAAAACATAAGGATGATCATATCTTATGGCATT chr6D_1 ACACAATAGATTTTGTACAAAAGATAAGGATTATCATATCTTAGGGCATT chr6D_1 ACACAATAGATTTTGTACAAAAGATAAGGATGATCATATCTTTGGGCATT chrUn_1 ACACAATAGATTTTGTACAAAAGATAAGGATGATCATATCTTATGGCATT chrUn_1 ACACAATAGATTTTGTACAAAAGATAAGGATGATCATATCTTATGGCATT chr6A_1 ACACAATAGATTTTGTACAAAAGATAAGGATGATCATATCTTAGGGCATT chr6D_624 ACACCGTATATTTTGTACAAAAGAGAAGGATGATCATATCTTAGGGAAAT chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TGATGCCATATTTTCCAACACATCTTATCATATATATA--GTGCAATTAA chr6B_1 TGATGCCATATTTCCCAACACATCTTATCATATATATA--GTGCAATTAA chr6B_1 TGATGCCATATTTTCCAACACATCTTATCATATA--TATAGTGCACTTAA chr6D_1 TGATGCCATATTTTCCAACACATCTTATCATATA--TA--GTGCAATTAA chr6D_1 TGATGCCATATTCTCAAACACATCTTATCATATA--TA--GTGCAATTAA chrUn_1 TGATGCCATATTTTCCAACACATCTTATCATATA--TATAGTGCAATTAA chrUn_1 TGATGCCATATTTTCCAACACATCTTATCATATA--TATAGTGCAATTAA chr6A_1 TGATGCCATATTCTCAAACACATCTTATC--ATA--TATAGTGCAATTAA chr6D_624 TAATGGCATATTTTCCAACACAAATTATC--------ATAGTGCAATTAA chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TGCTATATTTTCTGGT-GGTCATATATCTTAGTGCAATTAATATATGCTA chr6B_1 TGCTATATTTTCTGGT-GGTCATATATCTTAGTGCAATTAATATATGCTA chr6B_1 TGCTATATTTTCTAGT-GGTCATATATCTTATTGCAATTAATATATGCTA chr6D_1 TGCTATATTTTCCAAT-GGTCATATATCTTAGTGCAATTAATATATGCTA chr6D_1 TGATATATTTTCTAGT-GGTCATATATCTTAGTGCAATTAATATATGCTA chrUn_1 TGCTATATTTTCTGGT-GGTCATATATCTTAGTGCAATTAATATATGCTA chrUn_1 TGCTATATTTTCTGGT-GGTCATATATCTTAGTGCAATTAATATATGCTA chr6A_1 TGCTATATTTTCTAGT-GGTCATATATCTTAGTACAATTAATATATGCTA chr6D_624 TGCTATAATTTTGTAGAGGTAATATATCTTAGTGCAATTAATATATGATA chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TCTTTTGTACGCATACAAT------AATCCTTAGCTTATACATTATAATT chr6B_1 TCTTTTGTACGCATACAAT------AATCCTTAGCTTATACATTATAATT chr6B_1 TCTTTTGTCCGCATGCAAT------AATCCTTATCTCATACATTATAATT chr6D_1 TCTTTTGTACGCATACAAT------AATCCTTAGGTTATACATTATAATT chr6D_1 TCTTTTGTACGCATACAAT------AATCATTAGGTTATACATTATAATT chrUn_1 TCTTTTGTACGCATACAAT------AATCCTTAGCTTATACATTATAATT chrUn_1 TCTTTTGTACGCATACAAT------AATCCTTAGCTTATACATTATAATT chr6A_1 TCTTTTGTATGCATACAAT------AATCCTTAGGTTATACATTATAATT chr6D_624 TCTTTTGTACGCGTACAGTGAACTAATTCCTTATGATATATCTTATAATT chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ATAAGCAACATTAAATGTGAGGTTCACTCAGATGCATATAAATATGGTGG chr6B_1 ATAAGCAACATTAAATGTGAGGTGCACTCAGATGCATATAAATATGGTGG chr6B_1 ATAAGCAACATTAAATGTGAGGTGCACTCAGATGCATATAAATATGGTGG chr6D_1 ATAAGCAACATTAAATGTGAGGTGCACTCGGATGCATATAAATATGGTGG chr6D_1 ATAAGCAACATTAAATGTGAGGTGCACTCTGATGCATATAAATATGGTGG chrUn_1 ATAAGCAACATTAAATGTGAGGTGCACTCAGATGCATATAAATATGGTGG chrUn_1 ATAAGCAACATTAAATGTGAGGTGCACTCAGATGCATATAAATATGGTGG chr6A_1 ATAAGCAACATTAAATGTGAGGTGCACTCTGATGCATATAAATATGATGG chr6D_624 ATTCGCAACATTAAATGTGTGGTACGCTCAGATGCATATAAATATGGTGG chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -----------------------S-------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 --------------------------------------ATGAAAGGAAAG chr6B_1_TraesCS6B01G006100 TCTAAGAACTCCAAAACTAACAATTCCCTATATTCACAATGAAAGGAAAG chr6B_1 TCTAAGAACTCCAAAGCTAACAATTCCCTATATTCACAATGAAAGGAAAG chr6B_1 TCTAAGAACTCCAAAACTAACAATTCCCTATATTCACAGTGAAAGGAATG chr6D_1 TCTTAGAACTCCAAAACTAACAATTCCCTATTTCCACAATGAAAGGAATG chr6D_1 TCTAAGAACTCCAAAACTAACAATTCCCTATTTTCACAATGAAAGGAATG chrUn_1 TCTAAGAACTCCAAAACTAACAATTCCCTATATTCACAATGAAAGGAAAG chrUn_1 TCTAAGAACTCCAAAACTAACAATTCCCTATATTCACAATGAAAGGAAAG chr6A_1 TCTAAGAACTCCAAAACTAACAATTCCCTATTTTCACAATGAAAGGGATG chr6D_624 TATAGGAATTCCAAAACTAACAATTCCAGGTTCTAACAATGAAAGGAACA chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CAAGCCATTAGTGCAACTCTTTTCATGTCATTTCTAGTTATGGTGACCAG chr6B_1_TraesCS6B01G006100 CAAGCCATTAGTGCAACTCTTTTCATGTCATTTCTAGTTATGGTGACCAG chr6B_1 CAAGCCATTAGTGCAACTCTTTTCATGTCATTTCTAGTTCTGGTGACCAG chr6B_1 CAAGCCATTAGTGCGACTCTTTTCATGTCATTTCTAGTTCTGGTGACCGG chr6D_1 CAAGCCATTAGTGTGACTCTTTTCATGTCATTTCTAGTTCTGTTGACCAG chr6D_1 CAAGCCATTAGTGCGACAATTTTCATGTCATTTCTAGTTCTGGTGACCAG chrUn_1 CAAGCCATTAGTGCACCTCTTTTCATGTCATTTCTAGTTCTGGTGACCAG chrUn_1 CAAGCCATTAGTGCACCTCTTTTCATGTCATTTCTAGTTCTGGTGACCAG chr6A_1 CAAGCCATTAGTGCAACTCTTTTCATGTCATTTCTAGTTCTGGTGACCAG chr6D_624 CAAGCCATTAGTGTGACTCTTCTCATGTCATTTCTTGTTCTAGCGACCAG chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ---------------------------------------S---------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AGGAAAAGATGTTCAATACAAAAGGCAAGAGGAAGACAATACCCAGATTC chr6B_1_TraesCS6B01G006100 AGGAAAAGATGTTCAATACAAAAGGCAAGAGGAAGACAATACCCAGATTC chr6B_1 AGGAAAAGATGTTCAATACAAAAGGCAAGAGGAAGACAATACCCAGATTC chr6B_1 AGGAAAAGATGTGCAATACAAAAGGCAAGAGGAAGACAATACCCAGATTC chr6D_1 AGGAAAAGATGTGCAATATAGAAGGCAAGAGGAAGACAATACCCAGATTC chr6D_1 AGGAAAAGATGTGCAATACAGAAGGCAACAGGAAGACAATACCCAGATTC chrUn_1 AGGAAAAGATGTTCAATACAAAAGGCAAGAGGAAGACAATACCCAGATTC chrUn_1 AGGAAAAGATGTTCAATACAAAAGGCAAGAGGAAGACAATACCCAGATTC chr6A_1 AGGAAAAGATGTGCAATACAGAAGGCAACAGGAAGACAATACCCAGATTC chr6D_624 AGGAAAAGATGTGAGATATAGAAGGCAAGAGGAAGACAATACCCAGATTC chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TCAGTTATCACCGAGTTAATAAAACCATTGTGGTACGAATAATTAACCTT chr6B_1_TraesCS6B01G006100 TCAGTTATCACCGAGTTAATAAAACCATTGTGGTACGAATAATTAACCTT chr6B_1 TCAGTTATCACCGAGTTAATAAAACCATTGTGGTATGAATAATTAACCTT chr6B_1 TCACTTATCACCGAGTTAATAAAACCATTGTGGTATGAATAATTAACCTT chr6D_1 TCACTTATCACCGAGTTAATAAAACCATTGTGGTATGAATAATTAACCTT chr6D_1 TCACTTATCACCGAGTTAATAAAACCATTGTGGTATGAATAATTAACCTT chrUn_1 TCAGTTATCACTGAGTTAATAAAACCATTGTGGTATGAATAATTAACCTT chrUn_1 TCAGTTATCACTGAGTTAATAAAACCATTGTGGTATGAATAATTAACCTT chr6A_1 TCACTTATCACCGAGTCAATAAAACCATTGTGGTATGAATAATTAACCTT chr6D_624 TCACTTATCAAGGAGTTAATAAAACCATTCAGGTATGACTAATTAACCTT chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CTTATGTATATCTAGCATATGTTTTGGGGGCTAAAAAGTAGAGCAAACAT chr6B_1_TraesCS6B01G006100 CTTATGTATATCTAGCATATGTTTTGGGGGCTAAAAAGTAGAGCAAACAT chr6B_1 CTTATGTATATCTAGCATATGTTTTGGGGGCTAAAAAGTAGAGGAAACAT chr6B_1 CTTATGTATATCTAGCATATGTTTTGGGGGCTAAAAAGTAGAGGAAACAT chr6D_1 CTTATGTATATTTAGCATATGTTTTGGGGGCTAACAAGTAGAGGAAACAT chr6D_1 CTTATGTATACTTAGCATTTGTTTGGGGGGCTAACAAGTAGAGGAAACAT chrUn_1 CTTATGTATATCTAGCATATGTTTTGGGGGCTAAAAAGTAGAGGAAACAT chrUn_1 CTTATGTATATCTAGCATATGTTTTGGGGGCTAAAAAGTAGAGGAAACAT chr6A_1 CTTATGTATATTTAGCATATGTTTTGGGGGTTAACAGGTAGAGGAAACAT chr6D_624 CTCATGTATATTTAGCATATATTTTTATGACTAACAAGCAAAGGAAATCT chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------S------ forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 ------------------------TGGGGGCTAAAAAGTAGAGC------ reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 C-AAAACGGATGAAAGATGGAGATGTCTATGATTGCATTGCTGTGAATCA chr6B_1_TraesCS6B01G006100 C-AAAACGGATGAAAGATGGAGATGTCTATGATTGCATTGCTGTGAATCA chr6B_1 C-AAAACAGATGAAAGATGGAGATGTCTATGATTGCATTGATGTGAATGC chr6B_1 C-AAAATAGATGAAAGATGGAGATGTCTATGACTGCATTGATGTGAATGA chr6D_1 C-A-AACAGATGAAAGATGGAGATGTCTATGACTGCATTGATGTGAATGA chr6D_1 CAA-AACAGATGAAAGATGGAGATGTCTATGACTGCATTGATGTGAATGA chrUn_1 CAA-AACGGATGAAAGATGAAGATGTCTATGATTGCATTGATGTGAATGA chrUn_1 CAA-AACGGATGAAAGATG------------------------------- chr6A_1 CAA-AATAGATGAAAGATGGAGATGTCTATGACTGCATTGATGTGAATGA chr6D_624 CAA-AATAGATGGAAGACGGAGACGTCTATGACTGCATCGATGTGTATAA chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ----------------------------------------S-------S- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GCAACCGGCTTTCAGGCACCCATTATTGAAAGACCACAAAGTCCATGTAA chr6B_1_TraesCS6B01G006100 GCAACCGGCTTTCAGGCACCCATTATTGAAAGACCACAAAGTCCATGTAA chr6B_1 GCAACCGTCTTTCAGGCACCCACTATTGAAAGACCACAAAGTCCAGGTAA chr6B_1 GCAACCGACATTCAGGCACCCA--ATTGAAAGACCACAAAGTCCAGGTAC chr6D_1 GCAATCGGCTTTCAGGCACCCATTATTGAAAGACCACAAAGTCCAGGTAA chr6D_1 GCAACCGGCTTTCAGGCACCCATTATTGAAAGACCACAAAGTCCAGGTAA chrUn_1 GCAACCGACTTTCAGGCACCCATTATTGAAAGACCACAAAGTCCAGGTAA chrUn_1 -------------------------------------------------- chr6A_1 GCAACCGACTTTCAGGCACCCATTATTGAAAGACCACAAAGTCCAGGTAA chr6D_624 GCAACCGGGTTTAAACCACCCATTGTTGAAAGACCATAAAATCCAGGTAA chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ---------------------------------------------S---- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTCTAGTATATTG chr6B_1_TraesCS6B01G006100 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTCTAGTATATTG chr6B_1 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTCTAGTATATTG chr6B_1 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTATAGTATATTG chr6D_1 ATTAATTTCATAACAATATGATGTACCTCCATGAATTATCTAGTATATTA chr6D_1 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTCTAGTATATTA chrUn_1 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTCTAGTATATTG chrUn_1 -------------------------------------------------- chr6A_1 ATTAATTTCATAACAATATGATGTACCTCCATGAATTGTCTAGTATATTA chr6D_624 ATTAATTTCATAAAAATATGATATACATCCATGAATTGCTCAGTATATTG chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTAGTTC--ATGATTAATTGCATAAATGTTGATTCAGCGTGTTCTACACC chr6B_1_TraesCS6B01G006100 TTAGTTC--ATGATTAATTGCATAAATGTTGATTCAGCGTGTTCTACACC chr6B_1 TTAGTTC--ATGATTAATTGCATAAATGTTGATTCAGCGTGTTCTACTCC chr6B_1 TTAGTTC--ATGATTAATTGCATAAATGTTGATTCGGCGTGTTCTACTCC chr6D_1 TTAGTTCATATGATTAATTGCATAAATGTTGATTCAGCGTGTTCTACACC chr6D_1 TTGATTC--ATGATTAATTGCATAAATGTTGATTCAGCGTGTTCTACTCC chrUn_1 TTAGTTC--ATGATTAATTGCATAAATGTTGATTCAGCGTGTTCTACACC chrUn_1 -------------------------------------------------- chr6A_1 TTAGTTC--ATGATTAATTGCATAAATGTTGATTCAGCATGTTCTACTCC chr6D_624 TCAGTTC--ATAATTAAGTCCACGAATGTTGCTTTAGTGTGTTCTACTCC chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CTTCTTGTTTCATTAATCTTTTTGGATATGTTTTTTA-TGCTAGAAAGTT chr6B_1_TraesCS6B01G006100 CTTCTTGTTTCATTAATCTTTTTGGATATGTTTTTTA-TGCTAGAAAGTT chr6B_1 CTTCTTGTTTCATTAATCTTTTTGGATATGTTTTTTA-TGCTAGAAAGTT chr6B_1 CTTCTTGTTTCATTAATCTTTTTGGATATGTTTTTTA-TGCAAGAAAATT chr6D_1 CTTCTTGTTTCATTAATCTTTTTGGATATGTTTTT-A-TGCTAGAAAATT chr6D_1 CTTCATGTTTCATTAATCTTTTTGGATATGTTTTTTA-TGCTAGAAAATT chrUn_1 CTTCTTGTTTCATTAATCTTTTTGGATATGTTTTTTA-TGCTAGAAAGTT chrUn_1 -------------------------------------------------- chr6A_1 CTTCATGTTTCATTAATCTTTTTGGATATGTTTTT-AATGCTAGAAAATT chr6D_624 CTTCTTGTTTCATCAATCTTTCTGGATATGCTTTTTTACATTAGAAAATT chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TGGGCTATTGAAACCGTACTGAACTAAGAACCTTTTTACACAATATAATC chr6B_1_TraesCS6B01G006100 TGGGCTATTGAAACCGTACTGAACTAAGAACCTTTTTACACAATATAATC chr6B_1 AGGGCTATTGAAAGCGTACTGAACTAAGAACCTTTTTACATAATATAAGC chr6B_1 AGGGCTATTGAAAGAGTACTGAACTAAGAACCTTTTTACATAATATAAGC chr6D_1 AGGGCTATTGAAAGTGTAGTGAACTAAGAACCTTTTTGCATAATATAAGC chr6D_1 AGGGTTATTGGAAGTGTACTGAACTAAGAACCTTTTT------------- chrUn_1 AGGGATATTGAAACCGTACTGAACTAAGAACCTTTTTACATAATATAATC chrUn_1 -------------------------------------------------- chr6A_1 AGGGCTATTGGAAGTGTACTGAACTAAGAACCTTTTTACATAATATAAGC chr6D_624 AGGACTATTGAAAGTGAACTAAAGTGACAACCTTTTGACATAGTATAAGC chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs S---------------------------------------S--------- forward_971 -------------------------------------------------- reverse_1851 TGGGCTATTGAAACCGTACTGA---------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTTATAAATGATGAATGAAATTAGAACATGTTTTTTTGTGTACTGTCTTG chr6B_1_TraesCS6B01G006100 TTTATAAATGATGAATGAAATTAGAACATGTTTTTTTGTGTACTGTCTTG chr6B_1 TTTATAAATGATGAATGAAATTAGAACATGTTTTTTTGTGTATTGTCTTG chr6B_1 TTTATAAATGATGAATGAAATTAGAACATAATTTTTTGTGTATTGTCTT- chr6D_1 TTTATAAATGATGAATATAATTACAACATGTTTTTT-GTGTATTTTTTT- chr6D_1 -------------------------------------GTGTATTGTCTT- chrUn_1 TTTATAAATGATGAATGAAATTAGAACATGTTTTTTTGTGTACTGTCTGG chrUn_1 -------------------------------------------------- chr6A_1 TTTATAAACTATGAATAAAATTACAACATGTTTTTT-GTGTATTGTCTT- chr6D_624 TATGTCAATGATGAATAAAACTACAACATGTTTTGT-GTGTATTGTCT-- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TACTCCCTCCGTTCCAAAATATATGACTCAACTTTGTACTACCTTTAGTA chr6B_1_TraesCS6B01G006100 TACTCCCTCCGTTCCAAAATATATGACTCAACTTTGTACTACCTTTAGTA chr6B_1 TACTCCCTCCGTTCCAAAATAGATGACTCAACTTTGTACTACCTTTAGTA chr6B_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chr6D_1 -------------------------------------------------- chrUn_1 TACTCCCTCCGTTCCAAAATATATGACTCAACTTTGTACTACCTTTAGTA chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TAATGGTGGGTCATCTATTTTGGAACAGAGGGAGTACATTTGTAATATTT chr6B_1_TraesCS6B01G006100 TAATGGTGGGTCATCTATTTTGGAACAGAGGGAGTACATTTGTAATATTT chr6B_1 TAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTACATTTGTAATATTT chr6B_1 ---------------------------------GTACATTTGTAATATTT chr6D_1 ---------------------------------ATACATTTTTAATATTT chr6D_1 ---------------------------------ATACATTTGTAATACTT chrUn_1 TAATGTTGGGTCATCTATTTTGGAATAGAGGGAGTACATTTGTAATATTT chrUn_1 -------------------------------------------------- chr6A_1 ---------------------------------ATACATTTGTAATATTT chr6D_624 -------------------------------------------------- chr6B_1645 ------------------------------------CATTTATAATATTT chr6D_1645 ------------------------------------CATTTATAATATTT chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -----S-------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATTCTT chr6B_1_TraesCS6B01G006100 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATTCTT chr6B_1 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATTCTT chr6B_1 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATTCTT chr6D_1 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATTCTT chr6D_1 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATCATT chrUn_1 T-TTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATTCTT chrUn_1 -------------------------------------------------- chr6A_1 TGTTTATAAGGTGGTTCATTCTATTTTCAAACAGATGCAACCAAATCATT chr6D_624 -------------------------------------------------- chr6B_1645 TGTAACAT-GGTGGTTGATTTTATTTTCAAACAGATGAAACCAAGGTCTT chr6D_1645 TGTAACAT-GGTGGTTGATTTTATTTTCAAACAGATGAAACCAAATTCTT chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chr6B_1_TraesCS6B01G006100 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chr6B_1 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chr6B_1 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chr6D_1 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chr6D_1 TCCCTATTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chrUn_1 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chrUn_1 -------------------------------------------------- chr6A_1 TCCCTGTTTGGATGGATATCCAAACATTGCCTTCAGATG----------- chr6D_624 -------------------------------------------------- chr6B_1645 TCCCTGTTTGGAAGGATACCCAAACATTTCCTTCGGATTCTTTTTCACAA chr6D_1645 TCCCTGTTTGGATGGATACCCAAACATTTCCTTCGGATTCTTTTTCGCAA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ----AACCATCTACCATTGAGTGCCCAACGGGAACAATCCCAATACTGCA chr6B_1_TraesCS6B01G006100 ----AACCATCTACCATTGAGTGCCCAACGGGAACAATCCCAATACTGCA chr6B_1 ----AACCATCTACCATTGAGTGCCCAATGGGAACAATCCCAATACTGCA chr6B_1 ----AACCATCTATCATTGAGTGCCCAACGGGAACAATTCCAATACTGCA chr6D_1 ----AACCATCTATCATTGAGTGCCCAACGGGAACAATTCCAATAATGCG chr6D_1 ----AACCATCTATCATTGAGTGCCCAACGGGAACAATTCCAATACTGCG chrUn_1 ----AACCATCTACCATTGAGTGCCCAACGGGAACAATCCCAATACTGCA chrUn_1 -------------------------------------------------- chr6A_1 ----AACCATCTATCATTGAGTGCCCAACGGGAACAATTCCAATACTGCG chr6D_624 -------------------------------------------------- chr6B_1645 GTGCAACCATCTATCATCAAGTGCCCAACAGGAACAATTCCAATACTGCG chr6D_1645 GTGCAACCATCTATCATCAAGTGCCCAATAGGAACAATTCCAATACTGCG chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TACTAATGGAAGTGACACCATAGCAGCACATAGTT--------------- chr6B_1_TraesCS6B01G006100 TACTAATGGAAGTGACACCATAGCAGCACATAGTT--------------- chr6B_1 TACTAATGGAAGTGACACCATAGCAGCACATAGTC--------------- chr6B_1 TACTAATGGAAGTGACACCATAGCAGCACATAGTT--------------- chr6D_1 TACTAATGGAAGTGGCACCATAGCAGCACATAGTT--------------- chr6D_1 TACTAATGGAAGTGGCACCATAGCAGCACATAGTT--------------- chrUn_1 TACTAATGGAAGTGACACCATAGCAGCACATAGTT--------------- chrUn_1 -------------------------------------------------- chr6A_1 TACTAATGGAAGTGGCACCATAGCAGCACATAGTT--------------- chr6D_624 -------------------------------------------------- chr6B_1645 TAGTAATGCAAGTAGCACCATAGCAACACACAATATTGATGGGCTAAAAA chr6D_1645 TAGTAATGGAAGTAGCACCATAGCAACACACAATATTGATGGGCTCAAAA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ACGATGGGCAATTGGAGGTTAGTTTTTGTATAAGTTACAAA-TGAATTTG chr6B_1_TraesCS6B01G006100 ACGATGGGCAATTGGAGGTTAGTTTTTGTATAAGTTACAAA-TGAATTTG chr6B_1 ACGATGGGCAATTGGAGGTTAGTTTTTGTATAAGTTACAA---------- chr6B_1 ACGATGGGCAATTGGAGGTTACTTTTTGTATAAGTTACAAAATGAATTTG chr6D_1 ATGATGGGCAATTGGAGGTGAGTTTTTGTATAAGTTACAAAATGAATTTG chr6D_1 ACGATGGGCAATTGGAGGTGAGTTTTTGTATAAGTTACAAAATAAATTTG chrUn_1 ACGATGGGCAATTGGAGGTTAGTTTTTGTATAAGTTACAAA-TGAATTTG chrUn_1 -------------------------------------------------- chr6A_1 ACGATGGGCAATTGGAGGTGAGTTTTTGTATAAGTTACAAAATGAATTTG chr6D_624 -------------------------------------------------- chr6B_1645 ATGATATGCAATGGGAGGTGAGTTTTTGTACAAGTTACAAAATGAATTTG chr6D_1645 ACGATATGCAATGGGAGGTGAGTTTTTGTATAAGTTACAAAATGAATTTG chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTTTCACAATTTGATGGGATTTTTCTG-TAGGGTTGATTATGGAAATTAG chr6B_1_TraesCS6B01G006100 TTTTCACAATTTGATGGGATTTTTCTG-TAGGGTTGATTATGGAAATTAG chr6B_1 -------------------------------------------------- chr6B_1 TTGTCACAATTTGATGGGATTTTTCTG-TAGGATTGATTATGGAAATTAG chr6D_1 TTATCACAATTTGATGGGATTTTTCTG-TAGGGTTGATTATGGAAATTAG chr6D_1 TTATCACAATTTGACAGGATTTTT-TG-TAGGGTTGATTATGGATATTAG chrUn_1 TTTTCACAATTTGATGGGATTTTTCTG-TAGGGTTGATTATGGAAATTAG chrUn_1 -------------------------------------------------- chr6A_1 TTATCACAATTTTACATGA--TTTTTG-TAGGGTTGATTATGGATATTAG chr6D_624 -------------------------------------------------- chr6B_1645 TTATCATAGTTTGATGGGATTTTT-TGATAGGGTTGATTATGCCAATTGA chr6D_1645 TTATCATAGTTTGATGGGATTTTT-TGATAGGGTTGATTGTGCCAATTGG chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CGTATAATTGGTGCATTTCCTATGCAAGTCAAATTTACAATGTTGAATTA chr6B_1_TraesCS6B01G006100 CGTATAATTGGTGCATTTCCTATGCAAGTCAAATTTACAATGTTGAATTA chr6B_1 -------------------------------------------------- chr6B_1 CGTATAATTGTTGCATTTGCTATGCATGTCAAATTTACAATGTTGAGTTA chr6D_1 CGTATAATTGTTGCATTTGATATGCATGTCAAATTTACAATGTTGAGTTA chr6D_1 CGTATAATTGTTGCATTTGATATGCATGTCAAATTTACAATGTTGAGTTA chrUn_1 CGTATAATTGGTGCATTTCCTATGCAAGTCAAATTTACAATGTTGAATTA chrUn_1 -------------------------------------------------- chr6A_1 CGTGTAATTGTGGCATTTGATACGCATGTCAAATTTACAATGTTGAGTTA chr6D_624 -------------------------------------------------- chr6B_1645 CGTATAATTGTTGCATTTATGATGCATATCAAATGTACAATGTTGGATTA chr6D_1645 CGTATAATTGTTGCATTTATGATGCATATCAAATGTACAATGTTGGATTA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AAGAAGCAGCCTAGACACTAC-AATAATCTAATTAAATTGCAAGAAGGTA chr6B_1_TraesCS6B01G006100 AAGAAGCAGCCTAGACACTAC-AATAATCTAATTAAATTGCAAGAAGGTA chr6B_1 -------------------------------------------------- chr6B_1 AAGAAGCAGCATAGACACTAT-AATAATCTAATTAAATTACAAGAAGGTA chr6D_1 AAGAAGCATCATAGACACTAT-AATAATATAATTAAATTACAAGAAGGTA chr6D_1 AAGAAGCAGCATAGACACCAT-AATAATCTAATTAAATTACAATAAGGTA chrUn_1 AAGAAGCAGCCTAGACACTAT-AATAATCTAATTAAATTGCAAGAAGGTA chrUn_1 -------------------------------------------------- chr6A_1 AAGAAGCAGCATAGACACCAT-AATAATCTAATTAAATTACAATAAGGTA chr6D_624 -------------------------------------------------- chr6B_1645 AAGATGTACCATAGACACTATAAATAATCTGATTAAATTCCAAGAAAGTA chr6D_1645 AAGATGTACCATAGACTCTATAAATAATCTGATTAAATTCCAAGAAAGTA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs --------------------S----------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 AAGAAGCAGCCTAGACACTAC----------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTTTAAGAAAA----A--AA-TCACCTTCCGATGGTAATGGTTAATTTTT chr6B_1_TraesCS6B01G006100 TTTTAAGAAAA----A--AA-TCACCTTCCGATGGTAATGGTTAATTTTT chr6B_1 -------------------------------------------------- chr6B_1 TTTTAAGAAAAA---A--AA-TCACCTTCTGATGGTAATGGTTAATTTTT chr6D_1 TTTTAAGAAAAGAAGA--AA-TCACCTTCCGATGGTAATGGTTAATTTTT chr6D_1 TTTTAAGAAAAA---A--AA-TCACCTTCCAATGGTAATGGTTAATTTTT chrUn_1 TTTTAAGAAAAA---A--AA-TCACCTTCCGATGGTAATGGTTAATTTTT chrUn_1 -------------------------------------------------- chr6A_1 TTTTAAG-AAAA---A--AA-TCACCTTCCGATGGTAATGGTTAATTTTC chr6D_624 -------------------------------------------------- chr6B_1645 CTCTAAG-AAAA---AAATAGTCATATTTGGATGGTAACAGTTAATTTTC chr6D_1645 CTCTGAG-AAAA---AAAAA-TCATATTTGGATGGTAACAATTAATTTTC chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CATCGAGGGTCGTAATAATGAATGGTCTAGGTTCATAAAGT-ATGATGGA chr6B_1_TraesCS6B01G006100 CATCGAGGGTCGTAATAATGAATGGTCTAGGTTCATAAAGT-ATGATGGA chr6B_1 -------------------------------------------------- chr6B_1 CATCGAGGGTCGTAATAATTAATGGTCAAAGTTCATAAAGT-ATGATGG- chr6D_1 CATCGAGGGTCGTAATAATGAATTGCCTAGGTTCATCAAGT-ATGATGG- chr6D_1 CATCAAGGGTAGTAATAATGAATGGTCTAGGTTCGTCAAGT-ATGATGG- chrUn_1 CATCGAGGGTCGTAATAATGAATGGTCTAGGTTCATAAAGT-ATGATGGA chrUn_1 -------------------------------------------------- chr6A_1 CATCAAGTGTCGTAATAATGAACGGTCTAGGTTCGTCAAGT-ATGATGG- chr6D_624 -------------------------------------------------- chr6B_1645 CATCGAGGGTCACAATAATGAACTATTTAGATTCATCAAGTTATTATTG- chr6D_1645 CATCGAGGGTCACAATAATGAACGGTTTAGATTCATCAAGTTATTATGG- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AAAAT-GATTTATAAAAAAGAATGCAATTTTATAGTGAATGAAGGGCCTC chr6B_1_TraesCS6B01G006100 AAAAT-GATTTATAAAAAAGAATGCAATTTTATAGTGAATGAAGGGCCTC chr6B_1 -------------------------------------------------- chr6B_1 AAAAT-GATTTGTAAAAAAGAATGCAATTTTATAGTGAATGAAGGGCCTC chr6D_1 AAAAAGGATTTATAAAAAAGAATGCAATTTTATAGTGAATGAAGGGCCTC chr6D_1 AAAAT-GATTTATAGAAAAGAATGCAATTT-ATAGTGAATGAGTAT---- chrUn_1 AAAAT-GATTTATAAAAAAGAATGCAATTTTATAGTGAATGAAGGGCCTC chrUn_1 -------------------------------------------------- chr6A_1 AAAAT-GATTTATAGAAAAGAATGCAATTTTATAGTGAATGAAGGGCCTC chr6D_624 -------------------------------------------------- chr6B_1645 ACAAT-GAGTTTTTTT-G-----GCAATTTTATAGTGAATGAAGGGCCTC chr6D_1645 ACAAT-GAGTTTTTTTGG-----GCAATTTTATAGTGAATGAAGGGCCTC chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ATA----CTCTACAATACTTGAGTAGTTGATAATGATTTTTGTACCCTCA chr6B_1_TraesCS6B01G006100 ATA----CTCTACAATACTTGAGTAGTTGATAATGATTTTTGTACCCTCA chr6B_1 -------------------------------------------------- chr6B_1 ATA----CTCTACAATATTTGAGTAGTTAATAATGATTTTTGTACCCTCA chr6D_1 ATA----CTCTACAATATTTGAGTAGTTGGTACTGATTTTTGTACACTAA chr6D_1 ATA----CTCTACAATATTTGAGTAGTTGGTAATGATTTTTCTACCCTCA chrUn_1 ATA----CTCTACAATATTTGAGTAGTTGATAATGATTTTTGTACCCTCA chrUn_1 -------------------------------------------------- chr6A_1 ATATATACTCTACAATATTTGAGTAGTTGGTAATGATTTTTGTACCCTCA chr6D_624 -------------------------------------------------- chr6B_1645 ATA----CTCTACAACATTTGAGTAGTT---------------------- chr6D_1645 GTA----CTCCACAACATTTGAGTAGTTAGGAATGATTTTTTTGCCTTCA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AATCTTTATTTGTACTAAAAAAGTTATGTATGAACAGTATGTCAGTTGTA chr6B_1_TraesCS6B01G006100 AATCTTTATTTGTACTAAAAAAGTTATGTATGAACAGTATGTCAGTTGTA chr6B_1 -------------------------------------------------- chr6B_1 AATCTTTATGTGTACTAAAATAGTTATGTATGAACATTATGTCAGTTGTA chr6D_1 AATCTTTATTTGTACTAAAAAAGTTATGTATGAACATTATGTGAGTTGTA chr6D_1 AATCTTTATTTGTACTAAAAAAGTTATGTATGAACATTATGTCTG----- chrUn_1 AATCTTTATTTGTACTAAAAAAGTTATGTATGAACAGTATGTCAGTTGTA chrUn_1 -------------------------------------------------- chr6A_1 AATCTTTATTTGTACTAAAAAAGTTATGTATGAACATTATGTCTG----- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GATTTCTACGTCAACTAAATAAGTTATGTATGAGCATGATTTTAGTTGTA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CATGAAGCAATTCCAATTTCATTACCAAGTTTTAGCAACACTCTCTTTGA chr6B_1_TraesCS6B01G006100 CATGAAGCAATTCCAATTTCATTACCAAGTTTTAGCAACACTCTCTTTGA chr6B_1 -------------------------------------------------- chr6B_1 CATGAAGGAATTCCAATTTCATTACCAAGTTTTAGCAACACTCTCTTGGA chr6D_1 CATGAAGGAATTCCAATTTCATTACCAAACTTTAGCAACACTCTCTTGGA chr6D_1 CATGAAGGAATTCCAATTTCATTACCAGGTTTTAGCAACACTCTCTTGGA chrUn_1 CATGAAGCAATTCCAATTTCATTACCAAGTTTTAGCAACACTCTCTTTGA chrUn_1 -------------------------------------------------- chr6A_1 CATGAAGGTATTCCAATTTCATTACCAAGTTTTAGCAACACTCTCTTGGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 CATGAAGGAATTCCAATTTCATTACCAAGTTTTAGTAACACTCTCTTGGA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CAGTTTCATACTATATATATACTAGTCACAAATTCTTAGTTGTCAGCACT chr6B_1_TraesCS6B01G006100 CAGTTTCATACTATATATATACTAGTCACAAATTCTTAGTTGTCAGCACT chr6B_1 -------------------------------------------------- chr6B_1 CAGTTTGATACTATATA----CTAGTCACAAATTCTTAGTTGTCAGCACT chr6D_1 CAGTTTCATACTATATA----CTAGTCACAAATTCTTAGTTGTCAGCACT chr6D_1 CAGTTTCATACTATATA----CTAATCACAAATTCTTAGTTGTCAGAACT chrUn_1 CAGTTTCATACTATATATATACTAGTCACAAATTCTTAGTTGTCAGCACT chrUn_1 -------------------------------------------------- chr6A_1 CAGTTTCATACTATATA----CTAATCACAAATTCTTAGTTGTCAGAACT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GAGTTCCATA---TATA----CTAGTCCCAAATTCTTAGTTTTTAGCATT chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AATGT-TTTTCATTAATTGTTACTCTTTCCATGCCGAAATGTGAATGAAC chr6B_1_TraesCS6B01G006100 AATGT-TTTTCATTAATTGTTACTCTTTCCATGCCGAAATGTGAATGAAC chr6B_1 -------------------------------------------------- chr6B_1 AATGT-TTTTCATTAATTGTTACTCTTTCCATCCTGAAATGTGAATGAAC chr6D_1 AATGT-TTTTCATTGATTGTTACTCTTTCCATCCCGAAATGTGAATGAAC chr6D_1 A----------------------------CATCCCGAAATGTGAATGAAC chrUn_1 AATGT-TTTTCATTAATTGTTACTCTTTCCATGCCGAAATGTGAATGAAC chrUn_1 -------------------------------------------------- chr6A_1 AA----------------------------ATCCCGAAATGTGAATGAAC chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 AAGTTGTTTTCATTGATTGTTACTCTTTCCTTCCCAAAATGTGAATGACC chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ACACATCTTAAGATATAAGTTATACTGACAACATGGCAAAACAATGTAAG chr6B_1_TraesCS6B01G006100 ACACATCTTAAGATATAAGTTATACTGACAACATGGCAAAACAATGTAAG chr6B_1 -------------------------------------------------- chr6B_1 ACACATCTTAACATATAAGTTATACTGACAACATGGCAAAACAACATAAG chr6D_1 ACATATCTTAAGATTTAAGTTATACTGACAACATGGCAAAACAATGTAAG chr6D_1 ACACATCTTAAGATTTAAGTTATACTGACAACATGGCAAAACAATGTAAG chrUn_1 ACACATCTTAAGATATAAGTTATACTGACAACATGGCAAAACAATGTAAG chrUn_1 -------------------------------------------------- chr6A_1 ACACATCTTAAGATTTAAGTTGTACTGACAACATGGAAAAATAATGTAAG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 ACGCATCTTAAGATTGAAGTTGTATTGACAACGTGGCAA----------- chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TAATATGAACCTAAAGTGAT-ACATTTGAAATGCTTTTGAATATGAATCA chr6B_1_TraesCS6B01G006100 TAATATGAACCTAAAGTGAT-ACATTTGAAATGCTTTTGAATATGAATCA chr6B_1 ---TATGAACCAAAAGTGAT-ACATTTGAAATGCTTTCGAATATGAATCA chr6B_1 TAACATGAACCAAAAGTGAT-ACATTTGAAATGCTTTCGAATATGAATCA chr6D_1 TAATATGAACCAAAAGTGAT-ACATTTGAACTGCTTTCGAATATGAATCA chr6D_1 TAATATGAACCAAAAGTGAT-ACATTTGAAATGCTTTCGAATATGAATCA chrUn_1 TAATATGAACCAAAAGTGAT-ACATTT----------------------- chrUn_1 -------------------------------------------------- chr6A_1 TAATATGAACCAAAAGTGAT-ACATTTGAAATGCTTTCGAATACGAATCA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 ---TATGAAACGAAAGTGATAACATTTAAAATGCATTTGAATATGAATAA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -----------S-------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TATAATTTTAT------GTGCCACATAACCCATAACTTAATAGCCTAATT chr6B_1_TraesCS6B01G006100 TATAATTTTAT------GTGCCACATAACCCATAACTTAATAGCCTAATT chr6B_1 TATAATTTTAT------GTGCCACATAACCCATAACTTAATAGCCTAATT chr6B_1 TATAATTTTAT------ATGTCACATAACCCATAACTTGATATCTTAATT chr6D_1 TGTAATTTTAT------GTGTCACATAACCCATAACCTAATAGCTTAATT chr6D_1 TATAATTTTAT------GTGTCACATAACCCATAACTTAATAGCTTAATT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TATAATTTTAT------GTGTCACATAACCCATAACTTAATAGCTTAATT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 CGTAATATGATTTATGTGTGTCACGTAACTTAGAACTTCTTAGCTTAATT chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AATTGTCAAATTAAAAAATATATTGGGGTTGGCGCCATACATTTTGGAGA chr6B_1_TraesCS6B01G006100 AATTGTCAAATTAAAAAATATATTGGGGTTGGCGCCATACATTTTGGAGA chr6B_1 AATGGTCAAATTAAAAAAAAT--TGGGGTTGGCGCCTTACATTTTGGAGA chr6B_1 AATGGTAAAATTAAAAAATTTATTGGGGTTGGCGCCTTT-ATTTTGGAGA chr6D_1 AATGGTCAAATTAAAAATTATAATGGGGTTGGTGCCTTACATTTTGGAGA chr6D_1 ATTGGTCAAATTAAAAATTATAATGGGGTTTGTGCCTTACATTTTGGAGA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ATTGGTCAAATTAAAAATTATAATGGGGTTGGTGCCTTACATTTTGGAGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 AGTGGTCCAATTAAAAATTCTGATGGGTTTGGCGCCTTACATTTTTCATA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ---S--------------------------------S------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ACATGAATTACATGT-ATATCCTATCAGGCTTATCTACACATACTATTCA chr6B_1_TraesCS6B01G006100 ACATGAATTACATGT-ATATCCTATCAGGCTTATCTACACATACTATTCA chr6B_1 ACATGAATTACATGTGATATCCTATCAGGCTTATCTACACATACTATTCA chr6B_1 ACATGAATTACATGTGATATCCTATTAGGCTTATCTACACATACTATTCA chr6D_1 -----------ATGTGATATCCTATCAGGCTTATCTACACATACTATTCA chr6D_1 AGATGAATTACATGTGATATCCTATCAGGCTTATCTACACATACTATTCA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 AGATGAATTACATGTGATATCCTATCAGGCTTATCTACACATACTATTCA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 ACGTTAATTACATGTGATATCCTATCAAGTTTATCTATACATAGTATTCA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ATTTTCTCACTTAAAGGTGTTACTTTTAATTCTTGCAGTCAGCGGGACTC chr6B_1_TraesCS6B01G006100 ATTTTCTCACTTAAAGGTGTTACTTTTAATTCTTGCAGTCAGCGGGACTC chr6B_1 TTTTTCTCACTTAAAGGTGTTACTTTTAATTCTTGCAGTCAGCGGGACTC chr6B_1 TTTTTCTCACTTAAAGGTGTTACTTTTAATTCTTGCAGTTAGCGGGACTC chr6D_1 TTCTTCTCACTTAAAGGTGTTACTTTTAATTCTTGCAGTCAGCGGGACTC chr6D_1 TTATTCTCACTTAAAGGTGTTACTTTTAATTCTTGCAGTCAGCGGGACTC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TTCTTCTCACTTAAAGGTGTCACTTTTAATTCTTGCAGTCAGCGGGACTC chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 TTCTTCACATTTGCAGATGTTACTTTTATTTCTTGCAGAGGGCGGGACTC chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs S------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ATATACCAGGGTGATGTATATGGGGTGCGTGGTGTATTAAATGTTTGGGA chr6B_1_TraesCS6B01G006100 ATATACCAGGGTGATGTATATGGGGTGCGTGGTGTATTAAATGTTTGGGA chr6B_1 ATATACCAGGGTGATGTATATGGGGTGCGTGGTGTATTAAATGTTTGGGA chr6B_1 ATATACCAGGGTGATGTATATGGGGTGCGTGGTGTATTAAATGTTTGGGA chr6D_1 ATATACCAGGGTGATGTATATGGGGTGCGTGGTGTATTAAATGTTTGGGA chr6D_1 ATATACCAGGGTGATGTAGATGGGGTGCGTGGTGTATTAAATGTTTGGGA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ATATATCAGGGTGATGTATATGGGGTGCGTGGTGTATTAAATGTTTGGGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 AGATACATTGGTGATTTATTTGGGGCGCGTGCTCTAATAAATGTTTGGGA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GCCAAAGGTGAATAAATATAGTAAGGATTCTAGTGCAATGTGTGTAGAAA chr6B_1_TraesCS6B01G006100 GCCAAAGGTGAATAAATATAGTAAGGATTCTAGTGCAATGTGTGTAGAAA chr6B_1 TCCAAAGGTGAATAAATATAGTAAGGATTCTAGTGCAATGTGTGTAGAAA chr6B_1 GCCAAAGGTGAATAAATATAGTAAGGATTCTAGTGCAATGTGTGTAGAAA chr6D_1 GCCAAAGGTGAATAAATATAGTAAGGATTCTAGTGCAATGTGTGTAGAAA chr6D_1 GCCAAAGGTGAATAAATATAGTAAGGATTCAAGTGCAATGTGTGTAGAAA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GCCAAAGGTGAATAAATATAGTAAGGATTCAAGTGCAATGTGTGTAGAAA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GCCAAAGGTTAATAAAGGTAGCCAGGATTATAGCTCACTTTGGATAGATA chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TGAAAAGTGGAGGAGAACAACACACTGACATGATTGGTGCTGGTGTTCGG chr6B_1_TraesCS6B01G006100 TGAAAAGTGGAGGAGAACAACACACTGACATGATTGGTGCTGGTGTTCGG chr6B_1 TGAAAAGTGGTGGAGAACAACACACTGACAGGATTGGTGCTGGTGTTCGG chr6B_1 TGAAAAGTGGAGGAGAACAACACACTGACAGGATTTGTGCTGGTGTTCGG chr6D_1 TGAAAAGTGGAGGAGAACAACATATTGACAGAATTGGTGCTGGTGTTCGG chr6D_1 TGAAAAGTGGAGGAGAACAACACACTGACAGGATTGGTGCTGGTGTTCGG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TGAAAAGTGGAGGAGAACAACACACTGACAGGATTGGTGCTGGTGTTCGG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 TTGAAAATGGAGGGGGACAACACACAGATCGGATGGGCGCTGGTCTTCGG chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ------------------------------S------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 ------------------------------TGATTGGTGCTGGTGTTCGG forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 --------GGAGGAGAACAACACACTGACAT------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GTCTTTCCAACATTGAGTGGCGATACTTTTGTTAGATTTCATATTTCTTG chr6B_1_TraesCS6B01G006100 GTCTTTCCAACATTGAGTGGCGATACTTTTGTTAGATTTCATATTTCTTG chr6B_1 GTCTTTCCAACATTGAGTGGCAATACTTTTGTTAGATTTCATATTTCTTG chr6B_1 GTCTT--------------------------------------------- chr6D_1 GTCTTTCCAACATTGAGTGGCGATACTTTTGTTAGATTTCATATTTCTTG chr6D_1 GTCTTTCCAACATTGAGTGGCGACACTTTTGTTAGATTTCATATTTCTTG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GTCTTTCCAACATTGAGTGGCGATACTTTTGTTAGATTTCATATTTCTTG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GTATCTCCAACATTGAGTGGTGATGCTTTTTCTAGATTTCATGTTGCTTG chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GGTAATGCTTAA-TT-TATTCAGATACATGCTATTATGTGTTATATATTT chr6B_1_TraesCS6B01G006100 GGTAATGCTTAA-TT-TATTCAGATACATGCTATTATGTGTTATATATTT chr6B_1 GGTAATGCTTAA-TT-TATTCAGATACATGCTATTATGTGTTATATATTT chr6B_1 -------------------------------------------------- chr6D_1 GGTAATGCTTAATTT-TATTCAGATACATGCTATTATGTGTTATATATAT chr6D_1 GGTAATGCTTAA-TTTTATTCATACACATGCTATTATG--TTATATATTT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GGTAATGCTTAATTT-TATTCAGGTACATGCTATTATGT--TATATATTT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GGTACGTAATTG----------GATACATGCTATTATTGGCTATATATTT chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTATGATAATAAATTAATAATATAACTTCATATTTTCCTTTTA------- chr6B_1_TraesCS6B01G006100 TTATGATAATAAATTAATAATATAACTTCATATTTTCCTTTTA------- chr6B_1 TTATGATAATAAATTAATAATATAAGTTCATATTTTCCTTTTA------- chr6B_1 -------------------------------------------------- chr6D_1 TTATGATAATAAATTAATAATATATGTTCATATTTTCCTTTTA------- chr6D_1 TTATGATAATAAATCAATAATATAAGTTCATATTTTCCTTTCA------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TTATGATAATAAATTAATAATATAAGTTCATATGGGTCTTTCCAACATTG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GTATGATAAGAAATTAATAATGTATGTTGATATTTTGGTTTTGTTTTTGG chrUn_3038 -------------------------------------------------- chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------S------------------------ forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CCTTGGAACAAACCTCACAGTATGATGTCCTATACAAAAAGTCATGCATT chr6B_1_TraesCS6B01G006100 CCTTGGAACAAACCTCACAGTATGATGTCCTATACAAAAAGTCATGCATT chr6B_1 CCTTGGAACAAACCTCACAGTATGATGGCCTATACAAAAAGTCATGCATT chr6B_1 -------------------------------------------------- chr6D_1 CCTTGGAACAAATCTCACAGTATGATGGCCTATACAAAAAGTCATGCATT chr6D_1 CCTTGGAACAAACCTCACAGTATGATGGCCTATACAAAAAGTCATGCATT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 AG------------------------------------------------ chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 CCTTGGAACAAACTTCACAGTACGATGGCTATTCAAAGAAGTCATGCGTT chrUn_3038 -------------------------------------------ATGCATT chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs ---------------------------S---------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 ----GGAACAAACCTCACAGTATGATGT---------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GACTTCAGTTGTCCTGGTTTTGTGCAAGTTAGCCATAGAGTTGGTCTTGG chr6B_1_TraesCS6B01G006100 GACTTCAGTTGTCCTGGTTTTGTGCAAGTTAGCCATAGAGTTGGTCTTGG chr6B_1 GACTTCAGTTGTCCTGGTTTTGTGCAAGTTAGCCACAGAGTTGGTCTTGG chr6B_1 -------------------------------------------------- chr6D_1 GACTTCAGTTGTCCTGGTTTTGTGCAAGTTAGCCATAGAGTTGGTCTTGG chr6D_1 GACTTCAATTGCCCTGGTTTTGTGCAAGTTAGCCACAAAGTTGGTCTTGG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 GACTTCAGGTGTCCGGGATATGTGCAAGTCCACCACAATGTTGGTCCTGG chrUn_3038 GACTTCAGTTGTCCTGGTTTTGTGCAAGTTAGCCACAGAGTTGGTCTTGG chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AGCAAGAATACGATCACCCTCTGTTTATCGTGGAAAGCAGACAGTAATAC chr6B_1_TraesCS6B01G006100 AGCAAGAATACGATCACCCTCTGTTTATCGTGGAAAGCAGACAGTAATAC chr6B_1 AGCAAGAATACGACCACCCTCTATTTATCGTGGAAAGCAGACAGTAATAC chr6B_1 -------------------------------------------------- chr6D_1 AGCAAGAATGCGACCACCCTCTGTTTATCATGGAAAGCAGACAGTAATAC chr6D_1 AGCAAGAGTGCGACCACCCTCTGTTTATCATGGAAAGCAGACAGTAATAC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 AACAAGAATACAACCATCCTCTGTCTATGGTGGATTACAGAAAGTAGTAG chrUn_3038 AGCAAGAATACGACCACCCTCTGTTTATCGTGGAAAGCAGACAGTAATAC chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------S------------------------------------ forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------TCACCCTCTGTTTATCGTGGA---------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ACATTCAAATTTTCAAGGTATTATCGTATTCTTAAAGTATAAGATTTCTC chr6B_1_TraesCS6B01G006100 ACATTCAAATTTTCAAGGTATTATCGTATTCTTAAAGTATAAGATTTCTC chr6B_1 ACATTCAAATTTTCAAGGTATTATCATATTCTTAAAGTATAAGATTTCTC chr6B_1 -------------------------------------------------- chr6D_1 ACATTCAAATTTTCAAGGTATTATCGTATTCTTAAAGTATAAGATTTCTC chr6D_1 ACATTCAAATTTTCAAGGTATTATCGTATTCTTAAAGTATAAGATTTCCA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 ACATTCAAATATTCAAGGTATTATGTTATTCTTAAAATTTGCGATTTCTC chrUn_3038 ACATTCAAATTTTCAAGGTATTATCGTATTCTTAAAGTATAAGATTTCTC chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AAGTGTCATGTACAAATTATATGTACATAAATTAGTATTATTTGATTGTA chr6B_1_TraesCS6B01G006100 AAGTGTCATGTACAAATTATATGTACATAAATTAGTATTATTTGATTGTA chr6B_1 AAGTGTCATGTACAAATTATATGTACATAAATTAGTATTATTTGATTGTA chr6B_1 -------------------------------------------------- chr6D_1 AAGTGTCATGTACAAATTATATGTACGTAAATTATTATTCTTTGATTTTA chr6D_1 AAGTGTCATGTACAAATTATATGTACGGAAATTAGTAGTATCTGATTTTA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ------------------------------------------TGATTTTA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 AAGCACCTTGTACGAATTA------------------------------- chrUn_3038 AAGTGTCATGTACAAATTATATGTATATAAATTAGTATTATTTGATTGTA chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTTCGTGTGCATAACCACTATATATACCTTACTGAACGTGACCACAACTT chr6B_1_TraesCS6B01G006100 TTTCGTGTGCATAACCACTATATATACCTTACTGAACGTGACCACAACTT chr6B_1 TTTCGCGTGCATAACCATTATATATACCTTACTGAACGTGACCACAACTT chr6B_1 -------------------------------------------------- chr6D_1 TTTCGTGTGCATAACCACTATATATACCTTACTGAGAGTGACCACAACTT chr6D_1 TTTCGTGTGCATAACCACTATATATACCTTACTGAACGTGACCACAACTT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TTTCGTGTGCATAACCACTATATATACCTTACTGAACGTGACCACAACTT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TTTCGTGTGCATAACCACTATATATACCTTACTGAACGTGACCACAACTT chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GATATGTTTTTTTACGATCTTACACCCACATACTATCTTTTTGCACATAT chr6B_1_TraesCS6B01G006100 GATATGTTTTTTTACGATCTTACACCCACATACTATCTTTTTGCACATAT chr6B_1 GATATGTTTGTTTACGATCTTACACCCACATACTATCTTCTTGCACATAT chr6B_1 -------------------------------------------------- chr6D_1 GATATGCTTGTTTACCATCTTACACCCACATGCTATCTTTTTGCACATAT chr6D_1 GATATGCTTGTTTACCATCTTACACCCACATACTATCTTTTTGCACATAT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GATATGCTTGTTTACCATCTTACACCCACATACTATCTTTTTGCACATAT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GATATGTTTTTTTACGATCTTACACCCACATACTATCTTTTTGCACATAT chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ATGACACTATTCTAATAATATAGATTCAAAAGGCAAGTTCATTTAATCAT chr6B_1_TraesCS6B01G006100 ATGACACTATTCTAATAATATAGATTCAAAAGGCAAGTTCATTTAATCAT chr6B_1 ATGACACTATTCTAATAATATAGATTCAAAAGGCAAGTTCAATTAATCAT chr6B_1 -------------------------------------------------- chr6D_1 ATGACACTATTCTAATAATATAGATTCAAAAGGCAAGTTCAACTAATCAT chr6D_1 ATGACACTATTCTAATAATATAGATTCAAAAGGCAAGTTCAATTAATCAT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ATGACACTATTCTAATAATATAGATTCAAAAGGCAAGTTCAATTAATCAT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ATGACACTATTCTAATAATATAGATTCAAAAGGAAAGTTCAATTAATCAT chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -----------------------------------------S-------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GACAATATTCTGAACATGAAGGAAATACACATATATCATTCTGATTCATA chr6B_1_TraesCS6B01G006100 GACAATATTCTGAACATGAAGGAAATACACATATATCATTCTGATTCATA chr6B_1 GACAATATTCTGAACATGAAGGAAATACTCATATATCATTCTGATTCATA chr6B_1 -------------------------------------------------- chr6D_1 GACAATATTTTGAACATGAAGGAAATACACATATATCATTCTGATTCATA chr6D_1 GACAATACTTTGAACATGAAGGAA-TACATATATATCATTCTGATTCATA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GACAATACTTTGAACATGAAGGAAATACACATATATCATTCTGATTCATA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GACAATATTCTGAACATGAAGGAAATACACATATATCATTCTGATTCATA chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTCCTTGCTATGCAAAAAGGATTAGGTGAAGACATGCATGCCTACTATAT chr6B_1_TraesCS6B01G006100 TTCCTTGCTATGCAAAAAGGATTAGGTGAAGACATGCATGCCTACTATAT chr6B_1 TTCCTTGCTATGCAAAAAGGATTAGGTGAAGACATGCATGCCTACTATAT chr6B_1 -------------------------------------------------- chr6D_1 ACCCTTGCTATGCAAAAAGGATTAGGTGAGGACATGCATGCCTACTATAT chr6D_1 TCCCTTGCTATGCAAAAAGGATTAGGTGAGGACATGCATGCCTACTATAT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TCCCTTGCTATGCAAAAAGGATTAGGTGAGGACATGCATGCCTACTATAT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TTCCTTGCTATGCAAAAAGGATTAGGTGAAGACATGCATGCCTACTATAT chrUn_3529 -------------------------------------------------- chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CTCATCAAAAGGATTATAAAATAATTGGCCGCTAAAAAATACTAGAAAGA chr6B_1_TraesCS6B01G006100 CTCATCAAAAGGATTATAAAATAATTGGCCGCTAAAAAATACTAGAAAGA chr6B_1 CTCGTCAAAAGGATTATAAAATAATTGGACGCTAAAAAATACTAGAAAGA chr6B_1 -------------------------------------------------- chr6D_1 CTCATCAAAAGGATTATAAAATAATTGGCCGCCAAAAAATATTAGAAAGA chr6D_1 CTCATCAAAAGGATTATAAAATAATTCACCGCTAAAAAATACTAGAAAGA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 CTCATCAAAAGGATTATAAAATAATTCACCGCTAAAAAATACTAGAAAGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CTCATCAAAAGGATTATAAAATAATTGGCCGCTAAAAAATACTAGAAAGA chrUn_3529 ----------------------------------AAAAATACTAGAAAGA chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ATAAGATCACGATTGCAAATAATCATAGTTATTTAATAGCGTATGTAACT chr6B_1_TraesCS6B01G006100 ATAAGATCACGATTGCAAATAATCATAGTTATTTAATAGCGTATGTAACT chr6B_1 ATAAGATCACGATTGTAAATAATCATAGTTATTTAATAGCCTATGTATCT chr6B_1 -------------------------------------------------- chr6D_1 ATAAGATCACGATTGTAAATAATCATAGTTATTTAATAGCCTATTTATCT chr6D_1 ATAAGATCATGATTGTAAATAATCATAGTTATTTAATAGCCTATTTATCT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ATAAGATCATGATTGTAAATAATCTTAGTTATTTAATAGCCTATTTATCT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ATAAGATCACGATTGTAAATAATCATAGTTATTTAATAGCCTATGTATCT chrUn_3529 ATAAGATCACGATTGTAAATAATCATAGTTATTTAATAGCCTATGTATCT chr3D_4279 -------------------------------------------------- SNPs ---------------S------------------------S------S-- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CACGCAATATTGATTTAAGGACGGCATCTAACCTACAATAAATATTGATT chr6B_1_TraesCS6B01G006100 CACGCAATATTGATTTAAGGACGGCATCTAACCTACAATAAATATTGATT chr6B_1 CACGCAATATTGATTTAAGGACAGCATCTAACCTACAATAAATATTGATT chr6B_1 -------------------------------------------------- chr6D_1 CACACAATATTGATTTAAGGACGGCATCTAACCTGCAATAAATATTGATT chr6D_1 CACACAATATTGATTTAAGGACGGCATCTAACCTGCAATAAATATTGATT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 CACACAATATTGATTTAAGGACGGCATCTAACCTGCAATAAATATGGATT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CACGCAATATTGATTTAAGGACGGCATCTAACCTACAATAAATATTGATT chrUn_3529 CACGCAATATTGATTTAAGGACGGCATCTAACCTACAATAAATATTGATT chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TATTTTAGGACCCTGTGTCTAAGAACTGGTGGTTGACTTATGAGCATGTA chr6B_1_TraesCS6B01G006100 TATTTTAGGACCCTGTGTCTAAGAACTGGTGGTTGACTTATGAGCATGTA chr6B_1 TATTTTAGGACCCTGTGTCTAAGAACTGGTGGTTGACTTATGAGCATGTA chr6B_1 -------------------------------------------------- chr6D_1 TATTTTAGGACCCTGTGCCTAAGAACTGGTGGTTGACTTATGAGCACGTA chr6D_1 TATTTTAGGACCCTGTGTCAAAGAACTGGTGGTTGACTTATGAGCATGTA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TATTTTAGGACCCTGTGTCAAAGAACTGGTGGTTGACTTATGAGCATGTA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TATTTTAGGACCCTGTGTCTAAGAACTGGTGGTTGACTTATGAGCATGTA chrUn_3529 TATTTTAGGACCCTGTGTCTAAGAACTGGTGGTTGACTTATGAGCATGTA chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCATAGGAACAAAGG chr6B_1_TraesCS6B01G006100 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCATAGGAACAAAGG chr6B_1 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCTTAGGAACAAAGG chr6B_1 -------------------------------------------------- chr6D_1 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCTTAGGAACAAAGG chr6D_1 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCTTAGGAACAAAGG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCTTAGGAACAAAAG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCTTAGGAACAAAGG chrUn_3529 GCAATTGGATATTGGCCAAGTGCATTATTCGAATTCCTTAGGAACAAAGG chr3D_4279 -------------------------------------------------- SNPs -------------------------------------S------------ forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------ATAGGAACAAAGG forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 --------------GCCAAGTGCATTATTCGAATTCCA------------ reverse_5479 -------------------------------------------------- input_sequence_24901 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chr6B_1_TraesCS6B01G006100 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chr6B_1 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chr6B_1 -------------------------------------------------- chr6D_1 TGATGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chr6D_1 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chrUn_3529 TGACGCAGCATTCTGGGGTGGGATTGTTGAGGGGCCGACTGCCTCGTCAA chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 TGACGCAG------------------------------------------ forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 ACTCTCCGCAAATGGGTAGTGGACATTTTGCTTCGGAGGGATATGGAGGA chr6B_1_TraesCS6B01G006100 ACTCTCCGCAAATGGGTAGTGGACATTTTGCTTCGGAGGGATATGGAGGA chr6B_1 ACTCTCCGCAAATGGGCAGTGGACATTTTGCTTCGGAGGGATACGGAGGA chr6B_1 -------------------------------------------------- chr6D_1 ACTCTCCACAAATGGGCAGTGGACATTTTGCTTCGGAGGGATACGGAGGA chr6D_1 ACTCTCTGCAAATGGGCAGTGGACATTTTGCTTCCGAGGGATATGGACGA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ACTCTCCGCGAATGGGCAGTGGACATTTTGCTTCCGAGGGATACGGAGGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ACTCTCTGCAAATGGGTAGTGGACATTTTGCTTCGGAGGGATACGGAGGA chrUn_3529 ACTCTCTGCAAATGGGTAGTGGACATTTTGCTTCGGAGGGATACGGAGGA chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 GCAGCTTTCGT-AAAAAATATCCAGCTTGCGAATAATGAGAAGGGCTATT chr6B_1_TraesCS6B01G006100 GCAGCTTTCGT-AAAAAATATCCAGCTTGCGAATAATGAGAAGGGCTATT chr6B_1 TTAGCTTTCGTAAAAAAATATCCAGCTTGCGAATAATGAGAAGGGCTATT chr6B_1 -------------------------------------------------- chr6D_1 GCGGCTTTCGT-AAAAAATATCCAGATTGCGAATAATGAGAAGGGCTATT chr6D_1 GCGGCTTTCGT-AAAAAATATCCAGATTGCGAATAATGAGAAGGGCTATT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GCGGCTTTCGT-AAAAAATACCCAGATTGCGAATAATAAGAAGGGATATT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GCAGCTTTCGT-AAAAAATATCCAGCTTGCGAATAATGAGAAGGGCTATT chrUn_3529 GCAGCTTTCGT-AAAAAATATCCAGCTTGCGAATAATGAGAAGGGCTATT chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 TTGACACTCCAAATAATTCTCAAGTGCGGCCTGAATCAAGCGATAAATCC chr6B_1_TraesCS6B01G006100 TTGACACTCCAAATAATTCTCAAGTGCGGCCTGAATCAAGCGATAAATCC chr6B_1 TTGACACTCCAAATAAGTCTCAAGTGCGGCCTGAATCAAGCGATAAATCC chr6B_1 -------------------------------------------------- chr6D_1 TTGACACTCCAAATAAGTCTCAAGTGCGGCCTGAATCAAGCGATAAATCC chr6D_1 TTGACACTCCAGATAAGTCTCAAGTGCGGCCTGAATCAAGCGATAAATCC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TTGACACTCCAGATAAGTATCAAGTGCGTCCTGAATCAAGCGATAAATCC chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TTGACACTCCAAATAATTCTCAAGTGCGGCCTGAATCAT-CGATAAATCC chrUn_3529 TTGACACTCCAAATAATTCTCAAGTGCGGCCTGAATCAAGCGATAAATCC chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 AAATATACTGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chr6B_1_TraesCS6B01G006100 AAATATACTGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chr6B_1 AAATATACCGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chr6B_1 -------------------------------------------------- chr6D_1 AAATATACCGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chr6D_1 AAATATACCGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGAAT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 AAATATACCGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 AAATATACTGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chrUn_3529 AAATATACTGTGGAAAGATTTGAATATAGTAAATATGTAGGTATGCGTAT chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 CTTTTATGGTGGATTAGGGTCTGATAAGGCCTACTGA------------- chr6B_1_TraesCS6B01G006100 CTTTTATGGTGGATTAGGGTCTGATAAGGCCTACTGACATGAACTCAACA chr6B_1 CTTTTATGGTGGATTAGGGTCTTATAAGGCCTACTGACATGAACTCAACA chr6B_1 -------------------------------------------------- chr6D_1 CTTCTATGGTGGATTAGGGTCTTACAAGGCCTACTGACATGAACTCAACA chr6D_1 CTTCTATGGTGGATTAGGGTCTTATAAGGCCTACTGACATGAACTCAACA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 CTTCTATGGTGGATTAGGGTCTTATAAGGCCTACTGACATGAACTCAACA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CTTTTATGGTGGATTAGGGTCTTATAAGGCCTACTGACATGAACTCAACG chrUn_3529 CTTTTATGGTGGATTAGGGTCTTATAAGGCCTACTGACATGAACTCAACG chr3D_4279 -------------------------------------------------- SNPs ----------------------S--------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 ----------------------GATAAGGCCTACTGACATGAACTCA--- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 AATATATTAAAACAAT-CATTATGATCAAATAAGTGATGGTGAATTATGT chr6B_1 AATATATTAAAACAAT-CATTATGATCAAATAAGTGATGGTGAATTATGT chr6B_1 -------------------------------------------------- chr6D_1 AATATATTTAAAAAAACCACTATGATCAAATAAGTGATGGTGAATTATGT chr6D_1 AATATATTAAAACAAT-CACTATGATCAAATAAGTGATGGTGAATTATGT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 AATATATTAAAACAAT-CACTATGATCAAATAAGTGATGGTGAATTATGT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 AATATATTAAAACAAT-CATTATGATCAAATAAGTGATGGTGAATTATGT chrUn_3529 AATATATTAAAACAAT-CATTATGATCAAATAAGTGATGGTGAATTATGT chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ATTATCGATTTCCGTTCATGATAGAAGCTGGGGCCTAGCAGTAGTGTTGG chr6B_1 ATTGTCGATTTCCGTTCATGATAGAAGCTGGGGCCTAGCAGTAGTGTTGG chr6B_1 -------------------------------------------------- chr6D_1 TTTATTGAGTTCCGTTCATGATAGAAGTTGGGGCCTAGCAGAAGTGTAGG chr6D_1 ATTATCGAGTTCCGTTCATGATAGAAGTTGGGGCCTAGCAGTAGTGTTGG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ATTATCAAGTTCTGTTCATGATAGAAGTTGGGTCCTAGCAGCAGTATTGG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ATTATCGATTTCCGTTTATGATAGAAGCTGGGGCCTAGCAGTAGTGTTGG chrUn_3529 ATTATCGATTTCCGTTTATGATAGAAGCTGGGGCCTAGCAGTAGTGTTGG chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GGCCTGCGCTACTGCTAGCACGATGAACCTAACATTTAGCAATAGTGTGG chr6B_1 GGCCCGCGCTACTGCTAGCACATTGAACCTAACATTTAGCAATAGTGTGG chr6B_1 -------------------------------------------------- chr6D_1 GGCCCGCGCTACTACCAACATGCTGAACCTAACATTTAGCAGTAGTGCGG chr6D_1 GGCCCGCGCTACTGCCGGAACGCTGAACCTAACATTTAGCAGTAGTGCGG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GGCCCGCGCTACTGCCGGAACGCTGAACTTAACATTTAGCAGTAGTGTGG chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GGCCCGCGCTACTGCTAGCACGATGAACCTAACATTTAGCTATAGTGTGG chrUn_3529 GGCCCGCGCTACTGCTAGCACGATGAACCTAACATTTAGCAATAGTGTGG chr3D_4279 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GCCTCGCCTCATGTTACCACTACATCTATTAGGCA-----TGAGGTAGGA chr6B_1 GCCTCGCCTCATGTTACCACTACATCTATTAGGCA-----TGAGGTAGGA chr6B_1 -------------------------------------------------- chr6D_1 GCCTCGCCTCATGTTACTACTACATTTATTAGCAGTACTGTGAGGTAGGA chr6D_1 GCCTCGCCTAATCTTACTACTACATTTATTAGCAGTAGCGTGAGGTAGGA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 GCCTCGCCTCATCTTACTACTACATTTATTAGCAGTAGCGTGAGGTAGGA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GCCTCGCCTCATGTTACCACTACATCTATTAGGCA-----TGAGGTAGGA chrUn_3529 GCCTCGCCTCATGTTACCACTACATCTATTAGGCA-----TGAGGTAGGA chr3D_4279 -------------------------------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CCCACACTACTACTAAATAGCATCAGTGTTGGCTAGTGCCTCGCACCACT chr6B_1 CCCACACTACTACTAAATAGCATCAGTGTTGGCTAGTGCCTTGCACCACT chr6B_1 -------------------------------------------------- chr6D_1 CCCACACTACTACTAAATAGCAGCATTGTTGGCTACTACCCCGCACCACT chr6D_1 CCCACACTACTACTAAATAGCAGCAGTGTTGGCTACTGCCCCGCACCACT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 CCCACACTACTACTAAATAGCAGCAGTGTTGGCTACTGCCCCGCACCACT chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CCCACACTACTACTAAATAGCATCAGTGTTGGCTAGTGCCTCGCACCACT chrUn_3529 CCCACACTACTACTAAATAGCATCAGTGTTGGCTAGTGCCTCGCACCACT chr3D_4279 -----------------------------------------CGCGCCATT SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ACTATGCATGCGTATTTCATTTCAGCATATTTATACTGCATTTATACACC chr6B_1 ACTATGCATGCGTATTTCATTTCAGCATATTTATACTGCATTTATACACC chr6B_1 -------------------------------------------------- chr6D_1 ACTATGCATGCGT-TTTCATTTCAGCATATTTATATTGCATTTATACATC chr6D_1 ACTATGCATGCGTATTTCATTTCAGCATATTTATACTGCATTTATACACC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ATTATGCATCCGTATTTCATTTCAGCATATTTATACCGCATTTATACACC chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ACTATGCATGCGTATTTCATTTCAGCATATTTATACTGCATTTATACACC chrUn_3529 ACTATGCATGCGTATTTCATTTCAGCATATTTATACTGCATTTATACACC chr3D_4279 ACTATTACTGCATATTTCATTCTTCT-TATTTATACTGTATTTATACACC SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CTTATACAATTGT--TAGACCGTAGCAATG-------------------- chr6B_1 CTTATACAATTGT--TATACCGTAGCAATG-------------------- chr6B_1 -------------------------------------------------- chr6D_1 CTTATACAATTGT--TATACCATAGCAATG-------------------- chr6D_1 CCTATAGAATTGTTATATACCGCAGCAATG-------------------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 CTTATAGAATTGT--TATACCGTAGCAATG-------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CTTATACAATTGT--TATACCGTAGCAATG-------------------- chrUn_3529 CTTATACAATTGT--TATACCGTAGCAATG-------------------- chr3D_4279 CTTATATAAATTTT-TATATAGTAGCAACGATATAACAACACATCATCAA SNPs -----------------S-------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ----------------------------------ATATAACAAC---TCA chr6B_1 ----------------------------------ATATAACAAC---TCA chr6B_1 -------------------------------------------------- chr6D_1 ----------------------------------ATATAACAAC---TCA chr6D_1 ----------------------------------ATATAACAAC---TCA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 ----------------------------------ATATAACCACTCATCA chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ----------------------------------ATATAACAAC---TCA chrUn_3529 ----------------------------------ATATAACAAC---TCA chr3D_4279 CGTGGTCATATAACAACTAATCATCACCGTAGTCATATAGCAAC---TCA SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TCATCATCGTAGCGATATAACAACTCATCATTATCATCACCATCATCATC chr6B_1 TCATCATCGTAGCGATCTAACAACTCATCATTATCATCACCATCATCATC chr6B_1 -------------------------------------------------- chr6D_1 TCATCATCGTAGCGATATAACAACTCATCATTATGATCATCATCATCATC chr6D_1 TCATCATCGTAGCGATATAACAACTCATCATTATCATCACCATCATCATC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 TCATCATCGTAGCGATATAACAACTC------------------------ chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TCATCATCGTAGTGATATAACAACTCATCATTATCATCACCATCATCATC chrUn_3529 TCATCATCGTAGTGATATAACAACTCATCATTATCATCACCATCATCATC chr3D_4279 TCATCATCGTAGTCATATAACAA--------------------------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GTAGAGATATAACAATGTCTCACCATAAGGATCATCATAAGT---TCACC chr6B_1 GTAGAGATATAACAATGTCTCACCATAAGGATCATCATAAGT---TCACC chr6B_1 -------------------------------------------------- chr6D_1 GTAGTGATATAACAATGTCTCACCATAAAGATCATCATAAGT---TCACC chr6D_1 GTAGTGATATAACAATGTCTCACCATAAGGATCATCATAAGT---TCACC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GTAGAGATATAACAATGTCTCACCATAAGGATCATCATAAGT---TCACC chrUn_3529 GTAGAGATATAACAATGTCTCACCATAAGGATCATCATAAGT---TCACC chr3D_4279 -----------------TCTCATGATTATGATCATCGTAAGTTAATCACT SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 AGTACTAGCTAATTGTTAGCATT-TAGATAAATAATTTCTTAACACATGA chr6B_1 AGTACTAGCTAATTGTTAGCATT-TAGATAAATAATTTCTTAACACATGA chr6B_1 -------------------------------------------------- chr6D_1 AGTACTAGCTAATTGTTAGTATA-TAGATAATTAATTTCTTAACACATGA chr6D_1 AGTACTAGCTAATTGTTAGCATT-TAGATAAATAATTTCTTAACACATGA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 AGTACTAGCTAATTGTTAGCATT-TAGATAAATAATTTCTTAACACATGA chrUn_3529 AGTACTAGCTAATTGTTAGCATT-TAGATAAATAATTTCTTAACACATGA chr3D_4279 ACTACTAGCTAAGTGTTATCATCCTAGATAAATAACTTCCTAGCACATGA SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CAAGTACTAG---GACCTACTCTCTCTCTCT------CT----------- chr6B_1 CAAGTACTAG---GACCTACTCTCTCTCTCT------CTC---------- chr6B_1 -------------------------------------------------- chr6D_1 CAAGTACTAG---GACCTACTCTCTCTCTCT------CTGTGTGTGTGTG chr6D_1 CAAGTACTAG---GACCTACTCTTTCTCTCT------CTC---------- chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CAAGTACTAG---GACCTACTCTCTCTCTCT------CTC---------- chrUn_3529 CAAGTACTAG---GACCTACTCTCTCTCTCTCTCTCTCTC---------- chr3D_4279 CAAGTACTAGCAGGACCTACTC---------CTCTCTCTT---------- SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 -------GGTAAAATATCATAAAATAGAAAAACATGTCCAG-TCCAATAC chr6B_1 ----TCTGGTAAAATATCATAAAATAGAAAAACATGTCCAG-TCCAATAC chr6B_1 -------------------------------------------------- chr6D_1 TCTGTCTGATAAAATAGCATAAAATTGAAAAACCTGTCCAGCTTCAATAC chr6D_1 ------TGGTAAAATAGCATAAAATAGAAAAACCTGTCCAGCTCCAATAC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ------TGGTAAAATATCATAAAATAGAAAAACATGTCCAG-TCCAATAC chrUn_3529 ------TGGTAAAATATCATAAAATAGAAAAACATGTCCAG-TCCAATAC chr3D_4279 ------AGGTAAAATAGGATAAAACAGAAAAAACCCTCCTTCTCCATTAT SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GGAGCATAGAGATCCACCGGTCTCCAACTTGTGGCCTTCGCCCAGTCACT chr6B_1 GGAGCATAGAGATCCACCGGTCTCCAACTTGTGGCCTTCGCCCAGTCACT chr6B_1 -------------------------------------------------- chr6D_1 GGAGCATAAAGATCCACCGGTCTCCAATTTGTGGCCTTCGCCCAGTCACT chr6D_1 GGAGCATAGAGATCCACCGGTCTCCAATTTGTTGCCTTCGCCC---CACT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GGAGCATAGAGATCCACCGGTATCCAACTTGTGGCCTTCGCCCAGTCACT chrUn_3529 GGAGCATAGAGATCCACCGGTATCCAACTTGTGGCCTTCGCCCAGTCACT chr3D_4279 GAAGCATGGAGATCCATTGGTCTCCAATTTGTGGGCTGCGCTCGTTCACT SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ATTTTTTGCCATCCTTTGATTTTGAGGCCTCCGTCTGTTTGAGTAGTGAA chr6B_1 ATTTTTTGCCATCCTTTGATTTTGAGGCCTCCGTCGGTTTGAGTAGTGAA chr6B_1 -------------------------------------------------- chr6D_1 ATTTTTCGCCATCCTTTGATTTTGAGGCCTCCATCTATTTGAGTAGTCAA chr6D_1 ATTTTTCGCCATCCTTTTATTTA-AGGCCTCCATCTGTTTGAGTAGTCAA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ATTTTTCGCCATCCTTTGATTTTGAGGCCTCCGTCTGTTTGAGTAGTGAA chrUn_3529 ATTTTTCGCCATCCTTTGATTTTGAGGCCTCCGTCTGTTTGAGTAGTGAA chr3D_4279 ATTTTTCTCCATCCTTTGATTTTGAGACCTTCATCTGTTTTAGAAGTCGA SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GCACATGTATATTTGCAGACCCTCCCACCATGGCCGTACGCACACAATTG chr6B_1 GCACATGGATATTTGCAGACCCTCCCACCATGGTCGTATGCACACAATTG chr6B_1 -------------------------------------------------- chr6D_1 GTATGGATATTTG---AGACCCTCCGACCATGGCCGTACGCACGCAATTG chr6D_1 GTATGGATATTTG---AGACCCTCTGACCATGGCCGTACGC---CAATTG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GCACATGTATATTTGCAGACCCTCCCACCATGGCCGTACGCACACAATTG chrUn_3529 GCACATGTCTATTTGCAGACCCTCCCACCATGGCCGTACGCACACAATTG chr3D_4279 GTATGCACATTTG---AAAGTCTCCGTCCATGGATGTACGCTAACAATTG SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TCATCTCACCTTCGACATACATCAGTGGATGCACAACACAATTCAGGAGC chr6B_1 TCATCTCACCTTCGACATACATCAGTGGATGCACAACACAATTCAGGAGC chr6B_1 -------------------------------------------------- chr6D_1 TCATCTCACCTTCGATATACATCAGTGGATGGACAACATCATTCA-GAGC chr6D_1 CCATCTCACCTTCGACATACATCAGTGGATGCACAACATCATACAGGAGC chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TCATCTCACCTTCGACATACATCAGTGGATGCACAACACAATTCAGGAGC chrUn_3529 TCATCTCACCTTCGACATACATCAGTGGATGCACAACACAATTCAGGAGC chr3D_4279 TCATCTCATATTCGACATACATCAGAGTAGGCACAACATCATTCAGGAGC SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 TTCTGTTGAAGAACATAATAGTAACATATTTAGCAATGTAGTTTACTTAA chr6B_1 TTCTGTTGAAGAACATAATAGTAACATATTTAGCAATGTAGTTTACTTAA chr6B_1 -------------------------------------------------- chr6D_1 TTCTGTTGAAGAACATAATAGTAACATAGTTAGCAATGTAGTTTAATTAA chr6D_1 TTCTGTTGAAGAACATAATAGTAACATAGTTAGCAATGTAGTTTACTTAA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 TTCTGTTGAAGAACATAATAGTAACATATTTAGCAATGTAGTTTACTTAA chrUn_3529 TTCTGTTGAAGAACATAATAGTAACATATTTAGCAATGTAGTTTACTTAA chr3D_4279 TTCTGTTGGAGAACATAATAGTAAAATAGTTAGCAATGTGGTTTACTTCA SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 GAAAAATGTATGAAAAAGATGGACTAGTGACATAATAGTAAAAAATCTTA chr6B_1 GAAAAATGTATGAAAAAGATGGACTAGTGACATAATAGTAAAAAATCTTA chr6B_1 -------------------------------------------------- chr6D_1 GAAAAATGTATGAAAAAGATGGACTAGTGACATAATAGTAAACAATCTTA chr6D_1 GAAAAATCTATGAAAAAGATGGACTAGTGACATAATAGTAAAAAATCTTA chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 GAAAAATGTATGAAAAAGATGGACTAGTGACATAATAGTAAAAAATCTTA chrUn_3529 GAAAAATGTATGAAAAAGATGGACTAGTGACATAATAGTAAAAAATCTTA chr3D_4279 GAAGAACCTATGAAAT-GATGAACTGGTAACACAATAGTAAAAAATCTTA SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 -------------------------------------------------- input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 CCATGATATTTGCATGTATGTTACCACCACTCAACTCATGGACTAATGGT chr6B_1 CCATGATATTTGTATGTATGTTACCACCGCTCAACTCATGGACTAGTGGT chr6B_1 -------------------------------------------------- chr6D_1 CCATGATATTTGCATGTATGTTACCATCGCTCAACTCGTGGACTAGTGGT chr6D_1 CCATGATATTTGCATGTATGTTACCATCGCTCAACTCCTGGACTAGTGGT chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 CCATGATATTTGCATGTATGTTACCACCGCTCAACTCATGGACTAATGGT chrUn_3529 CCATGATATTTGCATGTATGTTACCACCGCTCAACTCATGGACTAATGGT chr3D_4279 CCATGATATTTGCACGAATGTTACCATCGGTCAACTCGTGGACTAGTGGC SNPs ----------------------------S--------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 ----------------------------ACTCAACTCATGGACTAATGGT input_sequence_24901 -------------------------------------------------- chr6B_1_TraesCS6B01G006100 ACATATCAACTATAATTTTTGCCAGCTCCAAAGATGATCTTAAAAGTCAT chr6B_1 ACATATCAACTATAATTTTTGCCAGCTCCAAAGATGATCTTAAACGTCAT chr6B_1 -------------------------------------------------- chr6D_1 ACGTATCAACTATAATTTTTGCCAGCTCCAAAGATGATCTTAAAAGTCAA chr6D_1 ACGTATCAACTATAA-TTTTGCCAGCTCCAAAGATGATCTTAAAAGTCAG chrUn_1 -------------------------------------------------- chrUn_1 -------------------------------------------------- chr6A_1 -------------------------------------------------- chr6D_624 -------------------------------------------------- chr6B_1645 -------------------------------------------------- chr6D_1645 -------------------------------------------------- chrUn_3038 ACATATCAACTATAATTTTTGCCAGCTCCAAAGATGATCTTAAAAGTCAT chrUn_3529 ACATATCAACTATAATTTTTGCCAGCTCCAAAGATGATCTTAAAAGTCAT chr3D_4279 ACGTAACCACTATAATTTTGGCCAACTCCATAAATGATCTTAAATTCCAG SNPs -------------------------------------------------- forward_971 -------------------------------------------------- reverse_1851 -------------------------------------------------- forward_1594 -------------------------------------------------- reverse_3281 -------------------------------------------------- forward_2421 -------------------------------------------------- reverse_3564 -------------------------------------------------- forward_3281 -------------------------------------------------- reverse_4188 -------------------------------------------------- forward_3478 -------------------------------------------------- reverse_4473 -------------------------------------------------- forward_4188 -------------------------------------------------- reverse_5479 ACA----------------------------------------------- input_sequence_24901 ---------------------------------- chr6B_1_TraesCS6B01G006100 AACTTCATTAACAAAGGTGACAAGAGAAATCTTA chr6B_1 AACTTCATTAACAAAGGTGACAAGAGAAATCTTA chr6B_1 ---------------------------------- chr6D_1 AACTTCATTAACAAAGGTGACAAGAGAAATCTTA chr6D_1 AACTTCATTAACAAAGGTGACAAGAGAAACCTTA chrUn_1 ---------------------------------- chrUn_1 ---------------------------------- chr6A_1 ---------------------------------- chr6D_624 ---------------------------------- chr6B_1645 ---------------------------------- chr6D_1645 ---------------------------------- chrUn_3038 AACTTCATTAACAAAGGTGACAAGAGAAATCTTA chrUn_3529 AACTTCATTAACAAAGGTGACAAGAGAAATCTTA chr3D_4279 AACATCATTAACAAAGGAGACAAGAGAATTCTT- SNPs ---------------------------------- forward_971 ---------------------------------- reverse_1851 ---------------------------------- forward_1594 ---------------------------------- reverse_3281 ---------------------------------- forward_2421 ---------------------------------- reverse_3564 ---------------------------------- forward_3281 ---------------------------------- reverse_4188 ---------------------------------- forward_3478 ---------------------------------- reverse_4473 ---------------------------------- forward_4188 ---------------------------------- reverse_5479 ----------------------------------