>input_sequence_24859
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-------------------------------------------------------------------------ATGCCTC
AAGACAGTTTCAGATCAGTGGTTTGCAGGTCCCTTTCAAAGAGTCACCCCTCCAGCTCCAGGAGCAAAGATGGCAGCTAC
CTTGAAAGAACTCAGTGTGATGCCCCTTATGTTGTCACACTGCAACCCACAGTCTGCCGGAGCTGCCAAAGCCAGGATTG
GCGCCCCTCGCAAAGTAACCGGGAGGAGAGGTCCATCTTGTCGCAAAGAGATTACGTGATGGGTTCCACACTCTCGAGGC
ATTTTGCCGAGGACCTCCTAAGAGGCGCTATGGACCTCCAGGACTCCCTTGTCATGCTTGAGAAGTTCCAAACAGTGTCA
CAGAGCATGCGGCAATCGACTAAGCAGAGAAGGCCAGGGAACGACGAGGAATCATTGGACGTCACTGGAATCCGTGAAGC
ACTCTTCGAAGCATCAATCGCCAAGAAGCTGGTCCCTGGAAGTGTCAGCAGTAGATTTGATGGGCAACTAAGGAATTCTA
CCGACGAGCTGAAGAGAGTGATCAAGGACAGCCTTTACAGGGCGAAACTCTTGTCAGTGGCCTCCAATGGTGAGCAGCTG
GCCTCCTTGAGTCAGTCATCACGGAGCACGCCAAACAGTACCGCCGTATCCAAGTCTACTAAGGAGAAGAAGGTGGTGCC
AAGATCATCATCCTGTCCACCTGTGCAACCTGACAAGTCCAAAACCCCAAGTTTGGTACCAACAAATAAAAAGCCGAGTT
TGGTAGCAAGGCTCATGGGCCTTGAAGGTTTGCCCCCACACAAGGGAAATACCGCCAAGAAAGACGAGACACTCAAGACA
GTAAGTTCACCAAGGGCACAGTTTGATATTGACATGCCTAAGTCAAAACCACCACCGGCAGAAAAGCTACCAAGGCAATC
ATTAGGAAAGGACTCTCAGCGTAATGGGAAGGCAGGGCAAGAGATGATGAAGACAATTCAAGTCAAGAGGCTTTTAAATA
CCATGAATTCTGATGTGCACAAGGTCCAGCAGTGCAATGTTCAGATGAATTTTCCTTATTTTCATGAGGACACCCTTCCT
TCGCAAGATACCTCTGCGGCTACTGAAGTTGGTTCAGCGAAATCAATCCAAAGAGAACAAAGGATGGGCCAAGCTCAAAC
CAAATCCCCCAAGGATGTGAAGGTTGTATCTCATATAACTCGAAAGCAGCGCATAGAACAAAAAACTGAGATCAGCAATA
GAAGCAGCAATAAACAGAAATATCATTTGCCTGATAGGAAGGGAGAAAGGAGGAAGGATGTGAAGGCTACGGCAGCATCA
GCTTCTCACAG------TAAACTAGTGAGAAAAACTGATAAGAAATCGGTTGCATCAAGTAGCAATCCTTCAACATGCCG
TACAATGAAGCCAATCTTACGAAGAACACCTGGTAGTTCCAGAGAGAAGATAGTGTCAAGTAGAAATGTCAACAACTCAA
CTATTGATGACATTGTGGTAAGCATCCTTCACTATA-AGCATAGCCTGAAAATCTTTCATACTATCTGAGACACGAAACT
ACCTTGAAGCTGGTAAAAGAATGACCACAAAGCGAGAACCTTTTGAAATCGAAATCTCCAGATTTGTAA-ATTAAGTATT
CTTTGAAAGCTATTCAAATATTTGATTTAAAGCTTTTCAGTTAAATCAGGCGTACCTTGAATGAAATGGTTGGTTCAAAC
ACTTATGTCCTTGGACCTTTTTTGCTCACAATGCAGGCATATGAGGTGCACAGAGAGTTCATCCGAACTGATTGTCCATC
CACAGAACATAGTGCGACACCTAGTGATGAAAGCTGCCAGAGTGCTGATTGGGACACAGAACCTTCCATCGATGGTAATA
ATCACCAAACTTTCATCGGTTTTA---------------------TTTATATCACTGTTATCAAAAGGCCAAAAGTAGGA
ATGACATCCAAATATCCAATAGTTAAGTCCAATCTACTGCTGATATGTGAATGAACTGGCCAGAAAGGAATTACAGTTTA
CTTCCAGGTGCCTTGGTTCGGGTTTACAATGAAAATGGTTCACACGAAGTGCTACATCTACTGCTGATTTGTGTTATTTT
ATGGTTTTGAGAAAAGGTTTCACATAGCAATTAGCAAATTTGGTGATACTGAATTCACGTACACAATCTTACAATTTTAT
GCTCTAATTTAAGAATATTTGACTGCACGGTTTCTAGGATGGCCTATATTTAGCAACCAAGGGAGTGCCATGGTTTTGTT
TGTTTT--TTTAGAAAAGGAGGATTACCCCCGGCCTATGCATCATTCCGATGCACACAGCCATTTATTAAAAAGGATTAC
CATGATTTTGTTTGTGGGTTACATATTAATATTTCTTGATGAGAGAAGAATT----------------------------
----CTCTCCCTTGCAAAAAAGAGAAGAAGTTCTGGCACTAA--CAATTCCTTTTCATGGCAGATGCCCATGAAGATTTT
AGCGGGTCCAGTGAAGCTTCACTGATTTCCAGCCAAAGCAGCCCACCAATAAACATAACACCAAAAAAGGAAGTTGAAAT
AAAAGATGAGATGAGTTTGTTTCTCCTAAGCAGCAAGTCATTCGTTAACCAAGCAGCACAGCTCATAGGCACTGACGCAT
ACGATTACGACCATCTGATCGAGCAATACAAGGATACCGGCAAGGCTGAAATGGGAGACCATGAACTCTACGTGGACATA
GCAATGGAGCAGCTGGAACGAAAACATCGTCAGCAGAACAGCCTATATTACACTGGATACAGGACCCAGAAATGCGGAGC
AACACCATACTTCTCCCTGGAGGCATTGCTAGGTGATATCGGCGATGGGACTCGGAAGCTGAAGAGCTACACCGACGACA
AAGACGACCATGGCAGTGGCACCAAAGACAGCATGTCCATGAAGCTGGAGAGGGATCTCGGATGCGCAGACCCGTCGATC
AACAGCGCATGGGACATGGGGTGGCAGGACTGGATCTGCATGGAGGAAACGGAGTGCTGGGTAAGGGATGCCGGGGAGGA
CGTTCTGTCCTCGCTCATTGAGGAGGCTGTTTTCGAAATGCTGGTAAACTGA----------------------------
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-------------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G153600
CATTTGTTTCCTCTCTCTCTCTCTCTCTCTCTCTCGTTTTGCTCTAGAATGCCGAGGATGGCGCCCCAAGAACTCTAGGG
TTCCTGGTCCTTCATTTCCGTTCC-----CCCCTTCAAAGTGTTCTGGTAAATCCTTTCTCCTGGC-GGCTCTAGGCTCT
GAGGTTGTTCAGTTGGGGCGAGGCCGAGAAGAATGTGTGGTTGC------------------TTGGTTGCGATTTCTTAG
GCCGTTTTTTCTGTATAGTTTGCT---------AGAGTATTTCCGTGCAGTTGAGAATATAT---------TATAGGCTA
ATTCGGTGCGTTTTGGGCTGGCTTATTTTGATTGTTTATTTACTACTAGGGTTTTCGATCTGTTCACTTTGACCTCAGGG
CAGTTATCA----AAATGACCTTTTTATTCCAACTACCACCTCCTGGCCACCTCCATCTCCTTTTTTCCTT--------T
TTATTTACTTTCATGTGGGTGGAAAGCAGGGCGCTGCTTGTGATGAATTACCTGTTGCTGACATGATGCCTGTGAAATTT
GAGCACCGGTGAAGGCTA----GCTGGCTGGTCAAGCCGCAGATTTTCCGTGGGCAAAATAGAGAAAAGCCAC-CCATAG
CTTTCTTCTGTAACCAATTTCTTCAACTGCTTGTCCTTGCATATTTAATTAGTCAGCAGTCGCTATTCCTCGC--AAAGC
GAGAAACTTGGAAGATATCGTAGTATAT-------ATATACAGCCAAAAGCTCATAA-TTTTTATATGTTT---------
-------------------CTTTCTTCTGAGTTGTACTGATTCATAGGTTCCTCTTTGTTCCTATCCAGGATCTCGAGTC
CACAG--------TCAAGACAGGCATCGAGTCCTAAAG--AAAATAAGTTCTTAAATTGGTATATGTTTCATATGTTATA
GGGAAGAGTCAAG----ATAATGTAAGTAGCTTTCTTTCTTTCTTTTGACCAGGAAATTATGTTTGCCCACTTGAATTTG
TGTATGATATATCGTCTGACCATTTTAGTGTGCTTATTCGTCCCTCTGTTTGTTTC--TTTCAGAAAAACAGAATGCCTC
AAGACAGTTTCAGATCAGTGGTTTGCAGGTCCCTTTCAAAGAGTCACCCCTCCAGCTCCAGGAGCAAAGATGGCAGCTAC
CTTGAAAGAACTCAGTGTGATGCCCCTTATGTTGTCACACTGCAACCCACAGTCTGCCGGAGCTGCCAAAGCCAGGATTG
GCGCCCCTCGCAAAGTAACCGGGAGGAGAGGTCCATCTTGTCGCAAAGAGATTACGTGATGGGTTCCACACTCTCGAGGC
ATTTTGCCGAGGACCTCCTAAGAGGCGCTATGGACCTCCAGGACTCCCTTGTCATGCTTGAGAAGTTCCAAACAGTGTCA
CAGAGCATGCGGCAATCGACTAAGCAGAGAAGGCCAGGGAACGACGAGGAATCATTGGACGTCACTGGAATCCGTGAAGC
ACTCTTCGAAGCATCAATCGCCAAGAAGCTGGTCCCTGGAAGTGTCAGCAGTAGATTTGATGGGCAACTAAGGAATTCTA
CCGACGAGCTGAAGAGAGTGATCAAGGACAGCCTTTACAGGGCGAAACTCTTGTCAGTGGCCTCCAATGGTGAGCAGCTG
GCCTCCTTGAGTCAGTCATCACGGAGCACGCCAAACAGTACCGCCGTATCCAAGTCTACTAAGGAGAAGAAGGTGGTGCC
AAGATCATCATCCTGTCCACCTGTGCAACCTGACAAGTCCAAAACCCCAAGTTTGGTACCAACAAATAAAAAGCCGAGTT
TGGTAGCAAGGCTCATGGGCCTTGAAGGTTTGCCCCCACACAAGGGAAATACCGCCAAGAAAGACGAGACACTCAAGACA
GTAAGTTCACCAAGGGCACAGTTTGATATTGACATGCCTAAGTCAAAACCACCACCGGCAGAAAAGCTACCAAGGCAATC
ATTAGGAAAGGACTCTCAGCGTAATGGGAAGGCAGGGCAAGAGATGATGAAGACAATTCAAGTCAAGAGGCTTTTAAATA
CCATGAATTCTGATGTGCACAAGGTCCAGCAGTGCAATGTTCAGATGAATTTTCCTTATTTTCATGAGGACACCCTTCCT
TCGCAAGATACCTCTGCGGCTACTGAAGTTGGTTCAGCGAAATCAATCCAAAGAGAACAAAGGATGGGCCAAGCTCAAAC
CAAATCCCCCAAGGATGTGAAGGTTGTATCTCATATAACTCGAAAGCAGCGCATAGAACAAAAAACTGAGATCAGCAATA
GAAGCAGCAATAAACAGAAATATCATTTGCCTGATAGGAAGGGAGAAAGGAGGAAGGATGTGAAGGCTACGGCAGCATCA
GCTTCTCACAG------TAAACTAGTGAGAAAAACTGATAAGAAATCGGTTGCATCAAGTAGCAATCCTTCAACATGCCG
TACAATGAAGCCAATCTTACGAAGAACACCTGGTAGTTCCAGAGAGAAGATAGTGTCAAGTAGAAATGTCAACAACTCAA
CTATTGATGACATTGTGGTAAGCATCCTTCACTATA-AGCATAGCCTGAAAATCTTTCATACTATCTGAGACACGAAACT
ACCTTGAAGCTGGTAAAAGAATGACCACAAAGCGAGAACCTTTTGAAATCGAAATCTCCAGATTTGTAA-ATTAAGTATT
CTTTGAAAGCTATTCAAATATTTGATTTAAAGCTTTTCAGTTAAATCAGGCGTACCTTGAATGAAATGGTTGGTTCAAAC
ACTTATGTCCTTGGACCTTTTTTGCTCACAATGCAGGCATATGAGGTGCACAGAGAGTTCATCCGAACTGATTGTCCATC
CACAGAACATAGTGCGACACCTAGTGATGAAAGCTGCCAGAGTGCTGATTGGGACACAGAACCTTCCATCGATGGTAATA
ATCACCAAACTTTCATCGGTTTTA---------------------TTTATATCACTGTTATCAAAAGGCCAAAAGTAGGA
ATGACATCCAAATATCCAATAGTTAAGTCCAATCTACTGCTGATATGTGAATGAACTGGCCAGAAAGGAATTACAGTTTA
CTTCCAGGTGCCTTGGTTCGGGTTTACAATGAAAATGGTTCACACGAAGTGCTACATCTACTGCTGATTTGTGTTATTTT
ATGGTTTTGAGAAAAGGTTTCACATAGCAATTAGCAAATTTGGTGATACTGAATTCACGTACACAATCTTACAATTTTAT
GCTCTAATTTAAGAATATTTGACTGCACGGTTTCTAGGATGGCCTATATTTAGCAACCAAGGGAGTGCCATGGTTTTGTT
TGTTTT--TTTAGAAAAGGAGGATTACCCCCGGCCTATGCATCATTCCGATGCACACAGCCATTTATTAAAAAGGATTAC
CATGATTTTGTTTGTGGGTTACATATTAATATTTCTTGATGAGAGAAGAATT----------------------------
----CTCTCCCTTGCAAAAAAGAGAAGAAGTTCTGGCACTAA--CAATTCCTTTTCATGGCAGATGCCCATGAAGATTTT
AGCGGGTCCAGTGAAGCTTCACTGATTTCCAGCCAAAGCAGCCCACCAATAAACATAACACCAAAAAAGGAAGTTGAAAT
AAAAGATGAGATGAGTTTGTTTCTCCTAAGCAGCAAGTCATTCGTTAACCAAGCAGCACAGCTCATAGGCACTGACGCAT
ACGATTACGACCATCTGATCGAGCAATACAAGGATACCGGCAAGGCTGAAATGGGAGACCATGAACTCTACGTGGACATA
GCAATGGAGCAGCTGGAACGAAAACATCGTCAGCAGAACAGCCTATATTACACTGGATACAGGACCCAGAAATGCGGAGC
AACACCATACTTCTCCCTGGAGGCATTGCTAGGTGATATCGGCGATGGGACTCGGAAGCTGAAGAGCTACACCGACGACA
AAGACGACCATGGCAGTGGCACCAAAGACAGCATGTCCATGAAGCTGGAGAGGGATCTCGGATGCGCAGACCCGTCGATC
AACAGCGCATGGGACATGGGGTGGCAGGACTGGATCTGCATGGAGGAAACGGAGTGCTGGGTAAGGGATGCCGGGGAGGA
CGTTCTGTCCTCGCTCATTGAGGAGGCTGTTTTCGAAATGCTGGTAAACTGACCAGAGAAAGATGGGAAGTAGGAGAGGT
TCTTGCCCTGTCGTGGAGATTTAGCTGTAGTCTGTACATCATTGGCACAGCTCGTGCTTTCAGTTGCTTTTTCTGTAGGA
GTTGCTCACATGTG-TTTTCCTGATGGGG---CTTTGCCTTGGTTCAGAAACTATTGTAATCTGTGCATAACTTCATAGC
AAGATGTCCTCATAGTTTATTTTTGCAATACTTGTGACAGACGATTGCTTCCGCTA----ATTATCTGCCATAGATATCA
TGACAACAGGACAACCTTCTATTCATGTA---TGAAGAGAGAAAATGAGATGAGTGTTTATCTTCTTCTTGACAATGCCA
AAGAGATGAAT--CGATCATGTCTAACT--GAAGATAATGTACTTTT------TACTATGCTACATATCATCCTTTAGTT
ACACATTTCTTAATTTGCTGTCAAATGCTATGTCTTTTTATACTCATGAGCATTAATCCCTTGAGATGGTAA--TTACAG
ATAAGTTTCTATGTTCATCTCCGCGGCATATTGCT---------------------------------------------
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-------------------------------------------------------------------ACTTTCGGGAGCA
TGTGTTTCCTTTCTGAATTTCGACCATTCAAATTTTGGACCCTATCGGTAGTACCAAAGGATTGTTCTCTGTCACTTTCG
GGCCGGTTGCCTTTTCCAGAGCAAACAAA---ATGTTGTCTCTGTAAACGGACTCTCTCACCACGTAGAATTGTTGTGAG
CTAATTTTTGAGTGAAATTTTAGATCA---------TAGAGAGCAGAACCTTGTATATTTTGAAGGCCACCCCCCTCCCA
TTCTTGAACCTATCTTTGTGCTCAGTCTCGCTCTGCTTCAAGCTTATCTTGTGAGGGAGAGATTCTATGAGTTCATGGGA
GAGTTTGATTGAAAATCTTTTAAGAAGTTCATCCTTGTGACTTTGCTTTGCTTCTCACTCTTGCAGGGTGTGCGCCTCTA
AGCGATGAACCTTCAAGTGTCGTGGAAGAATTAAGAGTTTGTACAAGGCACGGAGATCGTCTTTTTCGTGTGAGACCAA
>chr3D_13
------------CTCTCTCTCTCTCTCTCTCTCTCGTTTTGTTGTAGAATGCGTAGAATGGCGCCCCAAGAACTCTAGGG
TTCCCGGCCCTTCATTTTCGTTCC-----CCCCTGC-AAGTGTTCTGGTAAATCCTTTCTCCTGGC-CGCTCTAGGCTCT
GGGGTTGTTCAGTTGGGGTCAGGCCAAGAAGAATGTGTAGTTAGAGTTGAATAAATGTGCTGTTTGTTGCGATTTCTTGG
GCAGTTTTTTGGCTTGGTA--GCT---------AGAGTTTTTCCGTGCTGTTGAGAAAT-------ATATGTATAGGGGA
ATTCGGTGG-------------TTCTTTTTACTGTTTG-------CTAGGGTTTACGATTTGTTCAGTTTGATTTCAGGG
GAGTTAAGAAATCAAATGGCCTCTTTATTCCAACTACCACCTCCTGGCCACCTCCATCTCCTTTTTCCCTTTTTATTCAT
TTATTTACTTTCATGTGGGTGGAAAGCAGGGCGCTGCCTGTGATGAATTACCTGTTGCTGACATGATGCCTGTGAAATTT
GAGCACCGGTGAAGGCCAGGTGGCTGGCTGGTCAAGCCGCAGATTTTCCGTGGGCAAAATAGAGAAAAGCCCC-CCATAG
CTTTCTTCTGTAACCAATTTC---AACTGCTTGTCCTTGCATATTTAATTAGTCAGCAGTCGCTATT-CCTCGCAAAAGC
CAGAAACTTGGAAGATATCATAGTCTATACTCTATACATACAGCCAAAAACTCCTAA-AATTTCTGTAGACTA-------
---------GTACGAATAGCTTTCTTCTGAGTTTTACTGATTCATAGGTTCCTCTTTGTTCCTATCCAGGATCTTGAGTC
CAGAG--------TCAAGACAGACATCGACTCTTAAAGGAAAAATAACTTCTTAAAT--------------TATGTTATA
GGGAAGAATCAAG----ATAATGTAAGCAGCCTTCTTTCTTTGTTTTGACCAGGAAATTATGTTTGCTCACTTGAATTTG
TGTATGATATATCGTCTGACCATTTTAGTGTGCTAATTCATCCCT------------------GAAAAACAGAATGCCTC
AAGACAGTTTCAGATCAGTGGTTTGCAGGTCCCTTTCAAAGAGTCACCCCTCCAGCTCCAGGAGCAAAGATGGCAGCTAT
CCCGAAGGGATTCAGTGTGATGCCCCTTATGTTGTCACACTGCAACCCACGGTCTGCCGCAGCTGCCAAAGCCAGGATTG
GCGCCCCTCGCAAAGCAACCGGGAGGGGAGGTCCATCTTATCGCAAAGAGATTACGTGATGGGTTCCACACTCTCGAGGC
ATTTCGCCGAGGACCTCCTGAGAGGCGCCATGGACCTCCAGGACTCCCTTGTCATGCTTGAGAAGTTCCAAACTGTGTCA
CAGAGCATGCGGCAATCAACTAAGCAGAGAAGGCCAGGGAATGGCGAGGAATCGTTGGACGTGAGCGGAATCCGGGAAGC
ACTCTTCGAAGCATCAATCGCCAAGAAGCTGGTCCCTGGAAGTGTCAGCAGTAGATTCGACGGGCAACTAAGGAATTCTA
CCGACGAGCTGAAGAGAGTGATCAAGGACAGCCTTTACAGGGCGAAACTCTTGTCAGTGTCCTCCAATGGTGAGCAGCTG
GCCTCCTTGAGCCAGTCATCACGGAGCACGCCAAACAGTACCGCCGTATCCAAGTCTACTAAGGAGAAGAAGGTGGTGCC
AAGATCATCATCCTGTCCACCTGTGCAACCTGACAAGTCCAAATCCCCAAGTTTGGTACCAACAAATAAAACCCCGAGTT
TGGTAGCAAGGCTCATGGGTCTTGAAGGTTTGCCCCCACACAACGGAAATACCGCCAAGAAAGACGAGACACTCAAGACA
GTAAGTTCACCAAGGGCGCAGTTTGATATTGACATGCCTAGGTCAAAACCAACACCAGCAGAAAAGCTACCAAGGCAATC
ATTAGGAAAGGACTCTCAGCGTAAGGGAAAGGCAGGGCAAGAGATGATGAAGACAATTCAAGTCAAGAGGCTTTTAAATA
CCATGAATTCTGATGAGCACAAGGTCCAGCAGCGCAATCTTCAGATGAATTTTCCTTATTTTCACGAGGACACCCTTCCT
TCGCAAGATACCTCAGCGGCTACTGAAGTTGCTTCAGTGAAATCAATCCAAAGAGAACAAAGGATGGGCCAAGCTCAAAC
CAAAGCCCCCAAGGATGTGAAGGTTGTATCTCATAGAACTCGAAAGCAGCACATAG---AAAAAACTGAGATCAACAGTA
GAAGCAGCAATAAACAGAAATATCATTTTGCTGATAGGAAGGGAGAAAGGAGGAAGGATGTGAAGGCTAAGACAGCATCA
GCATCTCACACTAATGCTAAATTAGTGAAAAAGACTGATAAGAAATCGGTTGCATCAAGTAGCAATCCTTCAACATGCCG
TACAATGAAGCCGGTCTTACGAAGAACACCTGGTAGTTCTATAGAGAAGATAGTGTCAAGTAGAAATGTCAACAACTCAA
CTCTTGATGACATTGTGGTAAGCATCCTTCACTACATAGCATAGACTGAAAATCCTTCATGCTATCTGAGACACAAAACT
ACTTTGAAGCTGGTAACAGAATGACCAT-AAGCGAGAACCTTTTGAAATCGAAATCTTCAGATTCATAA-AATAAGTATG
CTTTGAAAGCCATTCAAATATTTGATTTTAGGTGTTTCAGTTAAATCAGACATACCTTGAATGAAATGGTTGGTTCAAAC
ACTTACGTCCTCGGACCTTTTTTGGTCACAATGCAGGCATATGAGGTGCACAGAGAGTTCATCCAAACTGATTGTCCATC
CACAGAACATAGTGCGACACCTAGTGATGAAAGCTGCCAGAGCGCTGATTGGGACACAGAACCTTCCATCGATGGTAATA
ATCACCAAACTTTTTGTTCTTCTAAAAGCATTTTCATCAGTTCTGTTTATATCACTGTTATCAAAAGGCCAAAAGTAGGA
ATGAC--------ATCCAATAGTTAACTCCAATATACTGCTGATATGTGAATGAACTGGCCAGAAAGGAATTACAGTTTA
CTTCCAGGTGCCTTGGTTCGGGTTTACGATGAAA-TGGTTCACACAAAGTGCTACATCTACTGCTGATTTATGTTATTAT
ATGGTCTTGAGAATAAGTTTCACATAGCAATTACCAAATTTGGTGATACTGAATTCACGTAGACAATCTTACAATTTTAT
GGTCAAATTTAAGAATATTTGACTGCACGATTTCTAGGATGGCCTGTATTTAGCGACAAAGAGAGTACCATGGTTTTGTT
TTGTTTTTTTTAGAAAAGGAGGATTACCCCCGGCCTATGCATCATTCCGATTCACACAGCCATTTATTAAAAAGGATTAT
CATGATTTTGTTTGTGGGTTACATATTAATATTTCTTAATGAGAGAAGAATTAAT-------------------------
--TGCTCTCCCTTGCAAAAAAATAGT-AATTTCTGGCAGTAACGCAATTCCTTTTCATGGCAGACGCTCAGGAAGATTTT
AGCGGGTGCAGTGAAGCTTCACTGATTTCCAGCCAAAGCAGCCCACCAATAAACAGAACACCAAAAAAGGAAGTTGAAAT
AAAAGATGAGATGAATTTGCTTCTCCTAAGCAGCAAGTCATTCGTTAACCAAGCAGCACAACTCATAGGCATTGATGCAT
ATGATTACGACCATCTGATCGAGCAATACAAGGATACTGGAAAGGCTGAAATGGGAGACCGTGAACTCTACATGGACATA
GCAATGGAGCAACTGGAACAAAAACATCGTCAGGGGATTAGTCTGTATTACACTGGATTCAGGACCCAGAAATGCGGAGC
AACACCATACTTCTCCCTGGAGGCATTGCTAGGTGATATCAGTGATGGAACACGGGAGCTGAAGAGCTACACCGATGACA
AAGACGACCATGGCAGTGGCACCAAAGACAGCATGTCCATGAAGCTGGAGAGGGATCTTGGATGTGCGGACGTGTCGATC
AACAGCGTGTGGGACATGGGGTGGCAGGACTGGATCTGCATGGAGGAAACAGAGTGCTGGGTGCGGGACGTCGAGGAGAG
CGTTCTGTCCTTGCTCATTGAGGAGGTTGCTTTGGAAATGCTGGCAAACTGACCAGAGAAAGATGCGAAGTAGGAGAGGT
TCTTG-CCTGTCGTGGAGATTTAGCTGTAGTCTGTACATCATTGGCACAGCTCGTGCTTTCAGTTGCTTTTTCTGTAAGA
GTTAGTCGCGTTTG-TTTTCCTGATGGGGGCT--TTGCCTTAGTTAAGAAACTACTGTAATCTGTGCATAACTTCATAGC
AAGATGTCCTCATAGTTTATTTTTGCAATACTTGTGACAGACGATTTCT----CTA----ATTATCTGCCATAAATATCA
CGACAATAGGGCAACCTTCTATTCATGTAAGATGAAGACAGAAAATGAGACGAGTGTTTATCTTCT-CTTGGCAATGACA
CAGAGATGTGGCCCGATCATGTCTAACT--GAACATAATGTATTTTT------TACTATGCTAGATATTATCCTTCAGTT
ACA-----------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_23
----------------------CTCTCTCTCTCTCGTTTTGTGGTAGAATGCGGAGGATGGCGCCCCAAGAACTCTAGGG
TTCCTGGCCCTTCTTCTTTCTCGTTTTTTCCCCTGC-AAGTGTCCTGGTAAATCCTTTCGCCTGGCCCGCTCTAGGCTCT
GCCACACATTCTTCTTGGCCTGAGAGTTGAAGAAATGTGC-TGC------------------TTTGTTGCGATTTCTTAG
GCAGTTTTTTGGGTTGTTA--GCTGGTAGTAGTAGAGTATTTCTGTGCTATTTGAGAAACATCCTCATATGGATAGGGGA
ATTCGGTGG-------------TTATTTTAACTGTTTG-------CTAGGGTTTACGATTTGTTCAATTTGACCTCAGGG
CAGTTAAGGGATCAAATGACCTTTTTATTCCAACTACCACCTCCTGGCCACCTCCATCTCCTTTTGTCCTTTTTATTTAT
TTATTTACTTTCATGTGGGTGGAAAGCAGGGCATTGCCTGTGATGAATTACCTGTTGCTGACATGATGCCTGTGAAATTT
GAGCGCCGGTGAAGGCCAGG----TGGCTGGTCAAGCCGCAGATTTTCCGTGG-CAAAATAGAGAAAAGCCCCTCCATAG
CTTTCTTCTGTATCCAATTTCTTCAACTGCTTGTCCTTGGCTATTTAATTAGTCAGCAGTCGCTATTCCCTCGCAAAAGC
CAGAAACTTGGAAGATATCATAGTCTAT-------ACATACAGCCAAAAACTACTAATTTTTTGTATGTTTCTTTCCATC
TGTAGAGTGGTACGAATAGCTTTCTGCTGAGTTGTACTGATTCATAGGTTCCTCTTTGTTCCTATCCAGGATCTTGAGTC
CAGAGTCAAGAACTCAAGACAGACATCGACTCTTAAAGGAAAA-TAACTTCTTTAAT--------------TATGTTATA
GGGAAGAATAAAAATATATAATGTAAGCAGCCTTCTTTCTTTGTTTTGACCAGGAAGTTATGTTTGCTCACTTGAATTTG
TGTATGATATATCGTCTGACCATTTTAGTATGCTTATTCGTCCCTCTGTTTTTTCTTTTTTCAGAAGAACAAGATGCCTC
AAGACAGTTTCAGATCAGTGGTTTGCAGGTCCCTTTCAAAGAGTCATCCCTCCAGCTCCAGGAGCAAAGATGGCGGCTAT
CCTGAAAGGACTCAGTGTGATGCCCCTTATGTTGTCACACTACGACCCACAGTCTGCCGAAGCTGCCAAAGCCAGGATTG
GCGCCCCTCGCAAATCAACCGGGAGGAGAGGTCCATCTTATCGCAAAGAGATTACGTGATGGGTTCCACACTCTCGAGGC
ATTTTGCCGAGGACCTCCTTAGGGGTGCTATGGACCTCCAGGACTCCCTTGTGATGCTTGAGAAGTTCCAAACAGTGTCA
CAGAGCATGCGGCAATCGACTAAGCAGAGAAGGCCAGGGAATGGCGAGGAATCATTTGACGTGACCGGAATCCATGAAGC
ACTCTTCGAAGCATCAACCGCCAAGAAGCTGGTCCCTGGAAGTGTCAGCTGTAGATTCGATGGGCAACTAAGGAATTCTA
CCGACGAGCTGAAGAGAGTGATCAAGGACAGCCTTTACAGGGTGAAACTCTTGTCAGTGTCCTCCAATGGTGAGCAGCAG
GCCTCCTTGAGTCAGTCATCACAGAGCACGCCAAACAATACCGCCGTATCCAAGTCTACTAAGCAGAAGAAGGTGGTGCC
AAGATCATTATCGTGTCCACCTGTGCAACCTGACAAGTCCAAAACCCCAAGTTTGGTACCAACAAATAAAACCCCGAGTT
TGGTAGCAAGGCTCATGGGCCTTGAAGGTTTGCCCCCACACAAGGGAAATACCGCCAAGAAAGATAAGACACTGAAGACA
GTAACTTCACCAAGGGCGCAGTTTGATATTGACATGCCTAAGTCAAAACCACTACCAGCAGAAAAGCTACCAAGACAGTC
GTTAGGAAAGGACTTGCAACGTAAGGGGAAGGCAGGGCAGGAAATGATGAAGACAACCCAAGTCAAGAGGCTTTTAAATA
CCATGAATTCTGATGAGCGCAAGGTCCAGCAGCACAATGTTCAGATGGATTTTCCTTATTTTCATGAGCACACCCTTCCT
TCGCAAGATACCTCAGCGGCTACTGAAGTTGGCTCGGTGAAATCAATCCAAAGAGAACAAAGGATGGGCCAAGCTCAAAC
CAGAACCCCCAAGGATGTGAAGGTTGTATCTCATATAACCCGAAAGCAGCACATAGAACAAAAAATTGAGATCAACAGTA
GAAGCAGCAATAAACAGAAATATCATTTGGCTGATAGGAAGGGAGAAAGGAGGAAGGATGTGAAGGCTAAGGCAGCATCA
GCATCTCACACTAAAGCTAAACTAGTGAAGAAGACTGAGAAGAAATCGGTTGCATCAAGTAGCAATCCTTCAACATGCCG
TACAATGAAGCCGGTCTTACGAAGAACACCTGGTAGTTCCAGAGAGAAAATAGTGTCAAGTAGAAATGTGAACAACTCAA
TTATTGATGACATTGTGGTAAGCATCCTTCACTATATAGCATAGCCTGAAAATCTTTCATGCTATTTGAGACACAAAACT
GCTTTGAAGTTGGTAAAAGAATGACCACAAAGCGAGAACCTTTTGAAATCGAAATCTTCAGATTCATAACAATAAGTATC
ATTTGAAAGCTATTCAAATATTTGATTTTAGGCGTTTAAGTTAAATCAGACGTACCTTGAATGAAATGGTTGGTTCAAAC
ACTTATGTCCTCGGACCTTTTTTGCTCACAATGCAGGCCTATGAGGTGCACAGAGAGTTCATCCAAACTGATTGTCCATC
CACAGAACATAGTGCGACACCTAGTGATGAAAGCTGCCAGAGCGCTGATTGGGACACAGAACCTTCCATCGATGGTAATA
ATCACCAAACCTTTTGTTCTTCTAAAAGCATTTTCATTGCTTCTGTTTATACCACTGTTCCCAAATGGCCTAAAGTAATA
ATGACACCCA----------AGTTAACTCCAATCTACTGCTGATATGTGAATAAACTGGCCAGAAAGGAATTGCAATTTA
CTTCTAGGTGCCTTGGTTTGGGTTTACAATGAAA-CGGTTCACA--AAGCACTACATCTACTGCTGATTTATAATATTAT
ATGGTTTTGAGAATAAGTTTCACATAGCAATTAGCAATTTTGGTGATACTGAATTCAGGTAGACAATCTTACAATTTTAT
GGT-AAATTTAAGAATATTTGGCTGCATGCTTTCTAGGATGGCCTATATGCAGCGACAAAGGGAGTACCATGGTTTTGTT
C-------------------------------------------------------------------------------
-------------GTGGGTTGCATATTAAAATTTCTTGATGGGAGAAGAATTAATTGCATATCATCACTTGCACATCCTA
GATGCTCTCCCTCGCAAAAAA--GAAGAAGTTCTAACACTAA--CAATTCCTTTTCATGGCAGACACTCAGGAAGATTTA
AGCAGGTCCAGTGAAGCTTCACCGATTTCCAGCCAAAGCAGCCCATCAATAAACAGAACACCAAAAAAGGAAGTTGAAAT
AAAAGACGAGATGAGTTTGCTTCTCCTAAGCAACAAGTCATTCGTTAACCAAGCAGCACAACTCATAGGCATTAACTCAT
ATGATTATGACCATCTGATCGAGCAATACAAAGATACCAGCAAGGCTGAAATGGGAGATCGTGAACTCTACACAGACATA
GCAATAGAGCAACTGGAACGAAAACATCGTCAGCAGAATAGCCTGTATTACACCGGATTCAGGACCCAGAAATGCGGAGC
AACACCATACTTCTCCCTCGAGGCATTGCTAGGTGATATCAGCGATGGGACCCGAAAGCTGAAGAGCTACACTGACGACA
AAGACGACCATGGCAGTGGCACCAAAGACAGTATGTCCATGAAGCTGGAGAGGGATCTTGGATGCACGGACCCGTCGATC
AACAGCGCGTGGGACATGGGGTGGCAGGATTGGATCTGCATGGAGGAAACGGAGTGCTGGGTAAGGGACGCCGGGGAGGA
CGTTCTGTCCTTGCTCATTGAGGAGGTTGCTTTGGAAATGCTGGTAAACTGACCAGAGAAAGATGGGAAGTAGGAGAGGT
TCTTGCCCTGTCGTGGAGATTTAGCTGTAGTCTGTACATCATTGGCACAGCTCGTGCTTTCAGTTGCTTTTTCTTTAAGA
GTTGGTCACGTTTGTTTTTCCTGATGGGGGCTCTTTGCCTTGGTTAAGAAACTACTGTAATCTGTGCAT-----------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_4187
AAACTTATTGTCTTACA---------------------------------------------------------------
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---------------------------------------------------------------GTGCATAACTTCATAGC
AAGATGTCCTCATAGTTTATTTT-GCAATACTTGTGACAGGCGATTTCT----CCCACTGATTATCTGCTATAAACATCA
CGACAACACGGCAACTTTTTATTCATGTAAGACGAGGAGAGAAAATGAGATGAGTGTTTATCTTCT-CTTGGCAATGGCA
AAGAGATGTGGCCCGATCATGTCTAACTTTGAAGATAATGTACTATGTTTTAGTACTATGCTAGATATCATCCTTTAGTT
ACATATTTCTTAATTTACTATCAAATACTACATCTTTTTATAGTCATGAGTATTAATCACTTGAGAGTGGGTACTTAAAG
ATAAGTTTCTATGCTCATCTCCGCGGCATATTGTTACGTAATAATATCAATATGGATGGGTACCTCCAGGTACATTTGAG
CTATGGTATTTGGATCTTTGCACGGTACCTCCGAACAATGGCGGACCTAGAAATAAAATGAAGGGTGTGCACACTTTTAA
AAAGTTGAAGTCTATTTAAATTAGCTTGCATGATCCTTAAAAATAAGCTAATTTTTACATGGTGAAAAACTGTTCTCCAA
AAACCTGGGTGTGCCATGGCACACCTGGCACACCCCCTGGTTACGCCACTGCCTCCGAATGTCGTGCACTTTCGGGTGCA
TGTGTTTCCTTTCTGAATTTCGACCATTCGAATTTTGGACGATACCGGTAGTACCAAAGGATTGTTCTCTGTCACTTTCG
GGCCAGTT-CCTTTTGCAGAGCAAATAAATTCATGTTGTATCTGTAAATGGACTCTCTAATCCTGCAGAATTGTTGTGAG
TTTATTTGAGACTTCGTGAGTGATTTTTTTACAGCCTAGAGAACAGAACCTTGTATATTTTGAAGGCCAAACCCCTTCCT
TTTCTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>SNPs
S-SS-SS--SSS-----------------------------S-S--------S---------------------------
-------S---------S----------------S-S------------------------------S------------
-S-----------------S--------------------------------------------S---------------
--S-------SS--SSSSSSS---------------------------S--------S-S-----------------SS-
--------SSSSSSSSSSSSSS-------S-S-----SSSSSSSS---------S----S------S-------------
------SS------------------------------------------------------------------------
-------------------------------------S------------------------------------------
----------------S------------------------------------------------------S--------
---------------------------------------------------------------------SSSS-------
S------------------S----S-----------S------------S---S---------S----------------
--------------------------------------------------------------------------S-----
--S-------------------S------S--S--------------S---------SSSSSSSSSSSSSS---------
-------S-------------------S---S----------S------------------------S------------
---------------------------------------------------S--SS------------------------
-------------------------------------------------------------------------------S
-S------S--------------------------------------------------S--------------------
---------------S-----------------------S----------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------S-S------------------S--S--------------
---------------------------------------------------------S----------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------SS-------
--------------------------------------------------------------------------------
-----------------S--------------------------------------S-----------------------
------------------------S-------------------------------------------------------
---------------S----------------S-----------------------------------------------
--------------S----------------------S------------------------------------------
----S---------------------------------------------S-----------------------S--S--
-----------------------------S---------------------------------------S----------
--S-------S-----------------S---S-----------------------------------------------
------------SS------------------------------------------------------------------
------------------------------------------------------------S-------------S-----
--S------------------------------------------------------S------SS-----S-------S
----------------------------S-S--S---------------S------------------------------
-----------S----------------------------------------------------S---------------
------------------------------------------S-------------------------------------
-------------SSSSSS--S----------------------------------------------------------
------S---SSS-------------S-----------------------------------------------------
----------------------------------S----------S------------------------S-------S-
-------------S-S---------------------------------------------S------------------
-S--S------------------------S------------------------S--S--------S-------------
-SS------------------------------------------------S---------------------------S
--------------------------------------------------------------------------------
---------------------SS-----------------------------------------S--S--S---------
-------------------------------------------------------S------------------------
-------------------S----------------------------------------S----------S--------
-S----------------------------------------------------------S----------S--------
-----------S--------------------------S-----S-------------S---------------------
----------------------------------------S----------S----------------------------
----------------------------------------------------------S--------S------------
--------S-----------------------------------------------------------S-----------
-----------S--------------S--S---S----------------------------------------------
-----------------------------------------------------------------------------S--
----S----S-S---------------------------------S--------S-------------------------
----------------------------------------------S--SSSS--------------------S------
S---------S-------------------------------------------------------S----S-----S--
--------SSS----------------------------------------------------S----------------
---S------------S--S------S---SS----------S-------S-------S-------SS-SSS-----S--
-------------S-------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------------------S----------SS--S-----------------------------------
----S---S------S---------S-------------S--------S---------S-S-SS-S--------------
S-S----SS--S-SSSSSSS-SSS-SS---------------S--------------------------SS-----S--S
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_338
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------TA
ATTCGGTGCGTTTTGGGC--------------------------------------------------------------
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>reverse_2175
--------------------------------------------------------------------------------
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--------------TGCGGCTACTGAAGTTGGTT----------------------------------------------
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-------------------------------------------------------------------------------
>forward_913
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-------------TCAAGACAGGCATCGAGTCC-----------------------------------------------
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-------------------------------------------------------------------------------
>reverse_2923
--------------------------------------------------------------------------------
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------------------------------------------TGCTGATTGGGACACAGAACC-----------------
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-------------------------------------------------------------------------------
>forward_1202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------AGCAAAGATGGCAGCTAC
CT------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>reverse_3166
--------------------------------------------------------------------------------
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---------------------------------------------GAAGTGCTACATCTACTGCTGA-------------
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-------------------------------------------------------------------------------
>forward_2245
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GGGCCAAGCTCAAAC
CAAAT---------------------------------------------------------------------------
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>reverse_4172
--------------------------------------------------------------------------------
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-----------CGCTCATTGAGGAGGCTGTT-------------------------------------------------
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-------------------------------------------------------------------------------
>forward_3972
--------------------------------------------------------------------------------
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--------------------------------GTGATATCGGCGATGGGACT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_5271
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------CCCCCTCCCA
TTCTTGAACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
