>input_sequence_24401
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----------------------------------------------------------------------------ATGG
GCGCGCTCGGGTGGCTTCAGGAATCAGGAAACTG-TATCGACCAGACAAAACGAAAACGTGACAGCAAACAGTTCCGTAC
CAATCTCCTCCACTGGTCAATCCCCATCCCCTGTTCCGTTCATACACCTACCTCCTCCGCCGCCGCCATGCCGCCGGCCG
GCAGCCTCACCGCCGACCAGCTCAGCTTCTTCGAGAAGAACGGTGAGCACGTCTTCGTCGCACCTCATCTCCCCCAACCT
CTCTGTCTCCCAGCATACG-GGGGCAGCTCCCCCAATCTCGAAATTAGCAGCGGAAGCCCTAATCTCAATCTCGCGTGGG
CTCTCGTTGGTCCCAGGCTACCTGGTGCTGGAGTCGTTCTCCAGCGCGGAGGAGGTTCAGGCGATGCGGGGCCGCATGGC
CGAGCTCGTCGAGGGCTTCGACGGCGCTGACTCCAGTGTCTTCTCCACCAAGGATCATGTATGCCGTCTCCAACTTGCCT
TATTTGTTCAGACTTCAGAGGGAT--GCTTTTGACTTGCCAAATAATAACCGCT------AACTTTGTAGGCGTGTGCCA
GTCTGCCATGTACATTTCTCCGGATAACTAGCTTCAAAATTCGTTTGATAGATTGAATCTCTAGTCTCACATGCCGTCCG
ATCTGGATTTGTGTTTCCGGAATAATTTTGTTTTCCTATGCAGCGGCAGTTGAAGGACGACTACTTCTTTAAGAGTGCGG
AGAATATATCTTTCTTCTTCGAGGGTATGTGATATCTGTCATCTTGGACTTGT-GGGAATGAGTTACCCTTGTCAATTAG
GAATCACCAATCTGTAGCATTTATCATTCATGCTCCTTGAACTAGGAGATGCTAGGTAATTTGTTACTCCCTCCGTTCCT
AAATATTTGTCTTTTTAGATATTTCAAATGAACTACCACATACGGATGTATATAGACATATATTAGAGTGTAGATTCACT
CATTTTGCTCCATATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAAAATAAGAA
GATATG--AGTTGCAGAGTTACATATGGT---GAACTGTGCTGCGAGTTCTGT--------TCTTGTTTTACATCTTAGC
TCTTAATGGTGATTTCTCTCTTGTCACTTTGCTGTTTCTGTGACCGCAGAAAAGGCATTTGGAGATGATGGATGCTTGAG
ACAGCCAAAGGAACTTTCAATTAATAAAGTTGGACATGGTTAGTATGCCCACAGTGCAATCAAATTCAGACATAAATTAT
TTTACATGTTTGTCTTTCAAACTATATGATCAATTGGTTCCTGTGA-TATCATTCGACTGTTTATGTTGAATGGCCCAAG
AATGTGTTGTCCCATGTGCAGAACAACAAGGAAATTCCATATTCACTAAAAAGCAATAAAATTGAGCATATCT---AAAG
AAAATGCAGCTGATTTAGAC-----GGTGCTAATAGTTTTAAACACAATCATGTTGCATTTCAGTGGACTGCATTGTTCT
TATTTAGAAAAATAATATTCGAAGTTCAAACTTGCAATTAAGTATGCTGTTTTTAATTCCATTAATCTGGAGCTAAGTCA
AAAGTGCATGTGCTTCAGGTTTTTTTTCCTCATCTGGAGCTAATTTATTCATCTTAGGCTCTTGGTTGCTATTTCCTTGT
TAATACGAGTTAATATTCTCTATGGTGTGGTTGG--------------------------CTT-TTTTGTATATGCTTAC
ATATTTTCTTGATGACATGATTTCTTAATTATTTAGATATATAACCTTCGCCATGCTGTATTTTATGCAGCACTACATGA
ACATGACCCCGTGTTCAAAAAGTTTGCTTTCTCGGAGAATATTTCTAGCCTGTTCTCTTCTTTAGGGTACAAGAGACCTG
CAGTTATTCAATCTATGTACATCTTTAAGGTACCTTTTGAAGA--CTCTAGTTAGTTTTTGTATGATATGAATGTTTCAT
TCTTATGAGGT---TTT-TTTTCTTCACATTTCAGCAACCGGGCATTGGTGGCGAGGTGGTGCCACACCAGGATAATACG
TTCCTTTATACCGAGCCTCTATCCTGTACAGGATTGTGGCTTGCACTTGAAGATGCAACAATAACCAATGGTTGCCTATG
GGCAATTCCCGGATCACATAAAAGTATGTTAGATTACCAAATTATCTATCTCAAAAAGTTCTGTTG------------CT
ATCAACTATCTATTTTTTATCTGACATTTGCAATGTTCTGGACCAGATGGTCTAAAAAGGCGAATGATCAGAGATGAAAA
TGGTACTCATTTTGATCGACCCTCCCCGCTTTATGACCAGAAAGAGTTTGTACCACTGGAAATGAAATCAGGTGACTTTG
TTGTTATTCACGGCGATCTTGTACATCAGAGGTGAATTTCCTTTCTATATCGCAGTTGCTTCCCTGTTGCTGTTTTCTTT
CTTACCTTTCGCTAACATGCTTTAGCTTTCTTTCACAGCTTCGAGAACCTTTCTCCAGTGTCAAGACATGCACTGAGCTT
ACATGTAGTTGACATGGAAGGATGTAAATGGTCCAAGGACAACTGGTTAGTTCATGATGGCGTGACAATGGTTCAGTTGC
AAATTATAATTTTTAGATTTTATTTGCTCAAGATGGTGTCACATAATTAACTTTCAGAACT---AGGACAGCGAAATGAG
CCCTAGTGTTCACTGAACTTGGCAAACACTTG-TTCCTCCTCAGAC--AGCTGCTGGTTTTAGACAAGCATAGTTTTCTA
TTGCCATGCAACAGCTTCGTAATAACTGAAGACATATTTGGTTACCCGTGAAGAAAAATGAAACATGATATTGTGTGAGT
ATAGTACTTGTTCAGGTTAGGTTAATACTTTTGCTACTTGTTTGGTTATGTTAGTCGTAATACTTGAGGTTATTCTGTCA
GGTGTCCAACGATATAGCACTCTGATCTTATAATTAGAAGTTTGTGTGCGCTGACAAAGCATATGCCACACC--------
----------ATACCTAGTGATTTGTGTACACAGACTTGTTGATTTTACTTACTTTTTTACATGATTTTTTTATGTTTGT
TTCTCAGGATACAAAGGAAAACTGCGCCTGAACCGCTCTATGTGTCTTAG------------------------------
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>chr4A_1_TraesCS4A01G270700
GCCACACAGGTCCCAGTGCCTTTGAAAAAAGTGCGCCGTGTAACCGTCCGGACCCGGGGCCTTTGTAGGGTACATCTGGA
AGAGAGCTGATTTCACCTCTTCCCCCATATAAGGAGTTGTGAGACCTTGGTTCATTGCATGTGTAACCTTCACCGGGACA
GCATCAAGGACTGTTTCCATGCCTATAGTGCCCTCTGACCTGATTAAATAAAACTCGAGTTTGGTTTCTGTAAAATAATT
CCTCACGAGCGGGCACATGGGCCACTGCCGCACTAGCACG----------------------------------------
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----------------------------------------------------------------------------CCAC
GCGGACATCACGTACGTTGGAATACGGATGAAGGCACCGTATTTGCACGATCGAACAAGTTTGAGCACCAGTTTTATGTA
TTTTACAACTTTAGGCACCAAATTAACCGCACATGACAAGTTTAGGCACCTCCGATGTATTTAACTCTTTGTTTTAATAA
AGGTCATGTTATAGGGTTTTTTTTCAACATAGGCCTTGTTACAGGAATTCGTTGTAGTGAGCAGCAAGTGCGATCACATG
AGTCGAAGGAAATGCCGATGCTCCCTCGGGACAGCAGTGCAACGATGGACACAACTCCTCGTGATGGACGCAGACGCCGA
TGCTTCCCTAGGACGGTTGATGCAGCTTGAGTTCGGGAGCACCTCGACAACTGACGTTCATCGTCGAGATGGGCGGCAGC
AGCGGCGCCCACGCCGGTGGCGAGCGTCAGTGGCGACGGTCAAAGCAACACGAGGAGGCGTCGCCTTGACGGGGAGTTTG
GGAGGAGCACGAGTGGCCACTGCTCTCATGGGGATGCACATCGAGTCCCGCAACACATCAGTTATTGTGGTGAAGAAATT
GTAACAACGAATTAGTTGCGAAACCTGGTCTAAGTAATATGTTGTTCCTAGTCATTTGATTAAAATCAGATCCAACAGCC
ACCGAGGCGTGCATCGTTATCTCGTGAGGTGATCCCAATCATTTCCCTATCAAAACAAAATCTCGGTTGATATCACATGG
GCGCGCTCGGGTGGCTTCAGGAATCAGGAAACTG-TATCGACCAGACAAAACGAAAACGTGACAGCAAACAGTTCCGTAC
CAATCTCCTCCACTGGTCAATCCCCATCCCCTGTTCCGTTCATACACCTACCTCCTCCGCCGCCGCCATGCCGCCGGCCG
GCAGCCTCACCGCCGACCAGCTCAGCTTCTTCGAGAAGAACGGTGAGCACGTCTTCGTCGCACCTCATCTCCCCCAACCT
CTCTGTCTCCCAGCATACG-GGGGCAGCTCCCCCAATCTCGAAATTAGCAGCGGAAGCCCTAATCTCAATCTCGCGTGGG
CTCTCGTTGGTCCCAGGCTACCTGGTGCTGGAGTCGTTCTCCAGCGCGGAGGAGGTTCAGGCGATGCGGGGCCGCATGGC
CGAGCTCGTCGAGGGCTTCGACGGCGCTGACTCCAGTGTCTTCTCCACCAAGGATCATGTATGCCGTCTCCAACTTGCCT
TATTTGTTCAGACTTCAGAGGGAT--GCTTTTGACTTGCCAAATAATAACCGCT------AACTTTGTAGGCGTGTGCCA
GTCTGCCATGTACATTTCTCCGGATAACTAGCTTCAAAATTCGTTTGATAGATTGAATCTCTAGTCTCACATGCCGTCCG
ATCTGGATTTGTGTTTCCGGAATAATTTTGTTTTCCTATGCAGCGGCAGTTGAAGGACGACTACTTCTTTAAGAGTGCGG
AGAATATATCTTTCTTCTTCGAGGGTATGTGATATCTGTCATCTTGGACTTGT-GGGAATGAGTTACCCTTGTCAATTAG
GAATCACCAATCTGTAGCATTTATCATTCATGCTCCTTGAACTAGGAGATGCTAGGTAATTTGTTACTCCCTCCGTTCCT
AAATATTTGTCTTTTTAGATATTTCAAATGAACTACCACATACGGATGTATATAGACATATATTAGAGTGTAGATTCACT
CATTTTGCTCCATATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAAAATAAGAA
GATATG--AGTTGCAGAGTTACATATGGT---GAACTGTGCTGCGAGTTCTGT--------TCTTGTTTTACATCTTAGC
TCTTAATGGTGATTTCTCTCTTGTCACTTTGCTGTTTCTGTGACCGCAGAAAAGGCATTTGGAGATGATGGATGCTTGAG
ACAGCCAAAGGAACTTTCAATTAATAAAGTTGGACATGGTTAGTATGCCCACAGTGCAATCAAATTCAGACATAAATTAT
TTTACATGTTTGTCTTTCAAACTATATGATCAATTGGTTCCTGTGA-TATCATTCGACTGTTTATGTTGAATGGCCCAAG
AATGTGTTGTCCCATGTGCAGAACAACAAGGAAATTCCATATTCACTAAAAAGCAATAAAATTGAGCATATCT---AAAG
AAAATGCAGCTGATTTAGAC-----GGTGCTAATAGTTTTAAACACAATCATGTTGCATTTCAGTGGACTGCATTGTTCT
TATTTAGAAAAATAATATTCGAAGTTCAAACTTGCAATTAAGTATGCTGTTTTTAATTCCATTAATCTGGAGCTAAGTCA
AAAGTGCATGTGCTTCAGGTTTTTTTTCCTCATCTGGAGCTAATTTATTCATCTTAGGCTCTTGGTTGCTATTTCCTTGT
TAATACGAGTTAATATTCTCTATGGTGTGGTTGG--------------------------CTT-TTTTGTATATGCTTAC
ATATTTTCTTGATGACATGATTTCTTAATTATTTAGATATATAACCTTCGCCATGCTGTATTTTATGCAGCACTACATGA
ACATGACCCCGTGTTCAAAAAGTTTGCTTTCTCGGAGAATATTTCTAGCCTGTTCTCTTCTTTAGGGTACAAGAGACCTG
CAGTTATTCAATCTATGTACATCTTTAAGGTACCTTTTGAAGA--CTCTAGTTAGTTTTTGTATGATATGAATGTTTCAT
TCTTATGAGGT---TTT-TTTTCTTCACATTTCAGCAACCGGGCATTGGTGGCGAGGTGGTGCCACACCAGGATAATACG
TTCCTTTATACCGAGCCTCTATCCTGTACAGGATTGTGGCTTGCACTTGAAGATGCAACAATAACCAATGGTTGCCTATG
GGCAATTCCCGGATCACATAAAAGTATGTTAGATTACCAAATTATCTATCTCAAAAAGTTCTGTTG------------CT
ATCAACTATCTATTTTTTATCTGACATTTGCAATGTTCTGGACCAGATGGTCTAAAAAGGCGAATGATCAGAGATGAAAA
TGGTACTCATTTTGATCGACCCTCCCCGCTTTATGACCAGAAAGAGTTTGTACCACTGGAAATGAAATCAGGTGACTTTG
TTGTTATTCACGGCGATCTTGTACATCAGAGGTGAATTTCCTTTCTATATCGCAGTTGCTTCCCTGTTGCTGTTTTCTTT
CTTACCTTTCGCTAACATGCTTTAGCTTTCTTTCACAGCTTCGAGAACCTTTCTCCAGTGTCAAGACATGCACTGAGCTT
ACATGTAGTTGACATGGAAGGATGTAAATGGTCCAAGGACAACTGGTTAGTTCATGATGGCGTGACAATGGTTCAGTTGC
AAATTATAATTTTTAGATTTTATTTGCTCAAGATGGTGTCACATAATTAACTTTCAGAACT---AGGACAGCGAAATGAG
CCCTAGTGTTCACTGAACTTGGCAAACACTTG-TTCCTCCTCAGAC--AGCTGCTGGTTTTAGACAAGCATAGTTTTCTA
TTGCCATGCAACAGCTTCGTAATAACTGAAGACATATTTGGTTACCCGTGAAGAAAAATGAAACATGATATTGTGTGAGT
ATAGTACTTGTTCAGGTTAGGTTAATACTTTTGCTACTTGTTTGGTTATGTTAGTCGTAATACTTGAGGTTATTCTGTCA
GGTGTCCAACGATATAGCACTCTGATCTTATAATTAGAAGTTTGTGTGCGCTGACAAAGCATATGCCACACC--------
----------ATACCTAGTGATTTGTGTACACAGACTTGTTGATTTTACTTACTTTTTTACATGATTTTTTTATGTTTGT
TTCTCAGGATACAAAGGAAAACTGCGCCTGAACCGCTCTATGTGTCTTAGTTCAGCCAGTTACTAATAAACATGATATCG
TCAGCTAGCAGTTTCAGTTGCTTTTCATCGGTGCAGTGAAATTTGGGAACGCCGCAGAGCAATGCTGGTTTCTTTGTTGT
CTTTCACATGTGTACA-TGTAAATACTGAATACTTGCTGTTGTGTTGTCATGATATCAGTTACTATCTGCAATCCTGAAA
TAAATCCAATTTCCTCCTCAGAATCTGCCGCGGCTGCTT-TTTTTTTCATGAGCACGTATCATGATAACTGCTCATTATT
TCTATTTTTCGGTGTGATTTTCTAATTTTGTGGTATTTT-CGATGTACCGTTTCCAAATATAAACAATCACCAGGAAAGC
ATGCACGTAAAACTGGGCCATTTATCTCAAAATAAAATAACTCAGCCATGTTCTGCAAAACTCATAGTATGATGACA-AT
AAGATCAACTTAGCAAAGCCAGGTCCTAGCAGGAGAGGAATCTCAACATATATCCCTTGGTAATCCATGAGAGCAACACA
AGTGAGGAGCACATTCAGTTATCCAACGGTGCAC------------------GTGTGATGGTGAGATCCAACGGGCTGCT
GTTAATTGGCTTTTTACCTTAATTATTGTA----AGTTAACCCAGGGGCTTTGTTTAGGC-------CTCATGTTGAGTA
CTAGTACCTCCATCCTGGTTTATTGTCCCCCCTTTGTAATTTGTGTCAATTTTTTTATCATC-GATTTGACTAACAAAAT
GTAAATTGTATGTCACAAAACTTACTT--TACTGGATTCATA-TTCGACGGTGGTTTTCAATTATACTATTTTTGTGGTA
TATAACTTATTATTTGGTAGTTAAATCAAAAATCAAAGTTTGACCCAAAAATTAAGGTGA-CTAACAAACCAAGACGG-G
GTGGTAATAAAGAATTCGCGAAAATTTAGTTCCTTAGATTAATTAGAAGTAAATGCAATTATCTTCTCAACTATCTCGC-
ATTTTACCCCAAATTCCAAAAAAACCTTTCTTGGTTCTTTGACCGATTCC
>chr6D_201
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----------------------------------------TGATTAAATAAAACTCGAGGTTGGTTTCTGTAAAATAATT
CCTCACGAGCGGGCACATGGGCCACTGCCGCGCTAGCACGCCACGCGAACAGCGCGTACGTTGGAATACAGATGAAGGCA
CCGTATTTGCACGACCGGACAAGTTTGAGCGTCAGTTTCGTGTATTTTACAAATTTAGGCACCAAACTGACCGCATAGGA
CAAGTTTAGGCACCTCCGATGTATTTAACTCTTTTTTTTTAATTTCTCCATGTCTACATGACACACACGTTTTTTAGAAA
TTGCCATCATGATGAAAACAAACAAATATCTTAAATTGTCATGTGAAACATCATAAACAAGTTCTGTTTTACGGATTTTC
CCATTTTTAAAGGTGACCCAGGAAAATGGAGAGGGTGAGGGCATCCCGCGCTCCGCCGCCCGCTACCCCTGACGGCAAAC
CCATTCGCCGGCGGGTCGGTGGGAAGTTTTGGACGCTCGCGGGAGATTCGGACTGTGAAGATGAAGATGAAGACGCCGAC
CCTCGAGGTTCATCGAAGGCTCTGTCGCCGACACCGTCAGACACCTTGTGCGAGGCGCTCAGGGTGGAGTACTCTAAGGA
GGTCCTTGCGGGCCTTGTCGACACGACCGTACCAGACGGAGATCCGGCATGGAAAGGGTTATGTGCGGCGGAGATTGTAG
AGGTGCTTCGCCGGCAAACGATCGCCGACGGGGGTTTGGCCATGGAAAGGGCCCATCCCTAAGGTACGTCTTCCTACGCT
AACTATGCAAGATTTCTTTTGGCTGAAAACATGGACGGTGGTTTCAAGACGTCATAAGAAGAAAAGGCCGGTGGTGGAGA
TGCCGCCGACGGTGGTAACCGATTCGATCGCAGTGATCCGGGGGAGCTCCTGTGTGATGCTCTTTGCGTCAAAAAGTCGA
TGGTTCGCACAGGGTGTAGCTCACCTGGGCCGGCCCATTTTGGGTTCGAGCGTTCGCGAGGCAGGAAAAAATGTGTGTCA
TAAAACTAAACATGAACTTGGAAAAAAGAAAAAAGAAACAGTGGTAATTAAAAAAATGATGCGTAAATGCGTCAATTAGT
CTACAATAGCTTTCTTGCTAACATTCTTATGGAAAGCAAAGTTCAGCTGCATGGCTGGATCGTGCCGGTAGTTCACCAAG
AGGTGTCTCGTTCGAAACTCCTATGTGGTTTTTTCTTTTCCATTTTATTTCTATCTAGCATACCCTATAAGCTGCATGAT
TAAATAAAACTCGAGGTTGGTTTCTGTAAAATAATTCCTCACGAGCGGGCACATGGGCCACTGCCGCGCTAGCATGCCAC
GCGAACAGCGCGTACGTTGGAATACGGATGAAGGCACCGTATTTGCACGACCGGACAAGTTTGAGCATCAGTTTCGTGTA
TTTTACAACTTTAGGCACCAAACTGACCGCACAGGACAAGTTTAGGCACCTCCGATGTATTTAACTCT------------
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----------------------------------------------CTTTTTTTAAT-----------------------
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>chr4B_975
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--------------------------------------------------CAAAATAAACTATAGGTTGATATCACATGG
GCGCGCTCGGGTGGCTTCAGAAATCAGGAAACTGACATCGACCAGACAAAACGAAAACGTGACGGCAAACAGTTCCGTAC
CCATCCCCTCCACTGGTCAATCCCCATCCCCTGTTCCGTTCATACATCTACCTCCTCCGCCGCCGCCATGCCGCCGGCCG
GCAGCCTCACCGCCGAGCAGCTCAGCTTCTTCGAGAAGAACGGTGAGCACTTCTTCGTCGCACCTCATCTCCCCCAACCT
CTCTGTCTCCCAGCAGCCGTGGGGCGGCTCCCCCAATTTCGAAATTAGCAGCGGAAGCCCTAATCTCAATCTTGCGTGGG
CTCCCGTTGGTTCCAGGCTACCTGGTGCTGGAGTCGTTCTCGAGCGCGGAGGAGGTTCAGGCTATGCGGGGCCGCATGGC
CGAGCTCGTCCACGGCTTCGACGGCGCTGACTCCAGTGTCTTCTCCACTAAGGATCATGTATGTCGTCCCGAACTTGCCT
TATTTGTTCAGACTTCAGAGGGATATACTTCTGACTTGCCAAATAATAATAACTAGTACAAACTTTTTAGGCATGTGCCA
GTCTGCCATTTACAGTTCTCCGGATAACTAGCTTCAATTCTCACTTGATAGATTTGATCTCTAGTCTCACATGCTGCCCG
ATCTGGATTTGTGTTTCCGGAATAATTTTGTTTGCG-ATGCAGCGGCAGTTGAAGGATGACTACTTCTTTAAGAGTGCGG
AGAATATATCTTTCTTCTTCGAGGGTATGTGATTTCTGTCATCTTGGACTTGTGGGGAATGAGTTACCCTTGTCAATTAG
GAATCACCAATCTGTAGCATTTATCATTCATGCTCCTTGGACTAGGAGATGCTAGGTAATTTGTTAGAA-----------
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---------------------------------------------------------------------------AAGAA
GATATATAAGTTACAGCGTCACATATGGCGGCGAACTGTGCTGCTAGTTCTGTAATTCTGTTCCTGCTTTACATCCTAGC
TATTGATGGTGATTTCTCTCTTGTCACTTTGCTGTTTCTGTGACCACAGAAAAGGCATTTGGAGATGATGGATGCTTGAG
ACAGCCAAAGGAACTTTCAATCAATAAAGTTGGACATGGTTAGTATGCCCACGGTGCAATCAAATTCAGAGATAAATTAT
TTTACATGTTTGTCTTTTGAACTATATGATCAATTGGTTCTTGTGAATATCATTTAACTGTTTATGTTGCTTGGACCAAG
AATTTGTTGTCCCGTGTGTGAAACAACAAGGAAATTCCTTATTCACTGGAAAGCGATAAAATTGAGTATATTTTGAAAAA
AAAATGCATCTGATTTAAAGGTGCTGGTGTTAATAATTTAAAGCACAATCATGTTGCATTTCAGTGGACAGTGTTGTTCT
TATCTGGAAAAATG--------AGTTCAGACTTGCATTTAAGTCTGCTGTCTATAATTCCATTAATCTGGAGTTAAGTCA
AAACCGCGTGTGGTTTAGGTTA--TTTTCCCATCTGGAGCTAATTCATTCATCTCAGGCTCTTAGTTGTTATTTTCTTAT
T--TACGAGTTAACATTGTCTATGGTGTGGGAGTCGTTCTCGAGCGCCATCAGTTATTTTCTT-TTTTTTATATGCTTGC
ATATTTTCATGATGACATAATTTCTCAACTATTAAGATATGTAACCTTCGCCATACTATATTTTATGCAGCACTACATGA
ACATGACCCTGTGTTCAAAAAGTTTGCTTTCTCGGAGAGTATTTCTAGCCTGTTCTCTTCTTTAGGGTACAAGAGACCTG
CAGTTATTCAATCTATGTACATCTTTAAGGTACCTTTTGAAGA--CT--AGTTAGTTTTCGTATGATATGCATGTTTTAT
TCGTTGTTATTGAGTTT-TTTTCTTCACATTTCAGCAACCGGGCATTGGTGGCGAGGTGGTGCCACACCAGGATAATACA
TTCCTTTATACAGAGCCCCTATCATGCACAGGATTGTGGCTAGCACTTGAAGATGCAACAATTACAAACGGTTGCCTATG
GGCAATTCCCGGATCACATAAAAGTATGTGACATTACAAAATTATTTAACCCAAAAAGTTCTGTTG------------CT
ATTTATATTATTTTTT-------ACATTTGCAATGTTCTGGACCAGATGGTCTAAAAAGGCGAATGATCAGAGATGAAAA
TGGTACTCATTTTGATCGCCCCTCCCCGCTTTATGACCAGAAAGAGTTTGTACCACTGGAAATGAAATCAGGTGACTTTG
TTGTTATTCACGGCGATCTTGTACATCAGAGGTGAATTTCCTTTCTATATCGCAGTTGCTTCCCTGTTGCTGTTTTCTTT
CTTACCTTTCGCTAACATGCTTTAGCTTTCTTTCACAGCTTTGAGAACCTTTCTCCAGTGTCAAGACATGCACTGAGCTT
ACATGTAGTTGACATGGAAGGATGTAAATGGTCCAAGGACAACTGGTTAGTTCATGATGGCGCGACAATGGTTCAGTTGC
AAAATATATTTTTTAGATTTTATTTGCTCAAGATGGTGTCACATAATTAACTGTCAGAACTAGAAGGACAGCGAAATGAG
CCCTAGTGTTCACTGAACTTGGCATACACTTGTTTCCTCCTCAAACCAAGCTGCTGGTTTTAGGCAAGCATAGTTTTCTA
TTGCCGTGCAACAGTTTCGTAATAGCTTAAGACATATTTGGTTACCCATGAAGAAAAATGAAACATGATATTGTGTGAGT
ATAGTACTTGTTCAGGTTAGGTTAGTACTTTTGCTACTTGTTTGGTTATGTTAGTCGTAATACTTGAGGTTATTCTGTCG
GGTGTCCAATGATATAGCACTCTGATCTTAGAATTAGAAGGTTGCGTGTGCTGACAAAGCATATGCCACACCATATGCAA
CATCATGGA-ATACCTAGTGATTTGTGTACACAGACTTGTTGATTTTACTCACT-----------TTTTTACATGTTTGT
TTCTCAGGATACAGAGGAAAACTGCGCCTGAACCGCTCTATGTGTCTTAGTTCAGCCAGTTACTAATAAACCTGATATCT
TCAGCAAGCAGTTTCAGTTGCTTATCATCGGTGC----AAATTTGGGAACGCCGCGGAGCAATGCTGGTTTCTTTGTTGT
CTTTCACATGTGTACACTGTAAATACTGAATACTAGCTGTTGTGTTGTCATGATATCAGTTACTATCTGCAATCCTGAAA
TAAATCCAATTTCCTCCTCAGAATCTGTCGCGGCTGCCCCTTTGTTTCATGATCAGGTATCATGATAACTGCTCACTATT
TCTATTTTTCGGTGTGATTTTCTAATTTCGTGGTATTTTGCGATGTACCGATTCCAAATATAAACAATCACCAGGAAAGC
ATGCACCTAAAACCGGGCCATTTATCTAAAAAAAAAAACTT------ATGTTCTGTAAAACTCATAGAGTCTGATGACAT
AAGAACAACTTAGCAGAGCCAGGTCCTAGCAGGAGAGGA-----------TATCCCTCTGTTATCCATGAGAGCAAC---
-GTGAGGAGCACATTCAGTTATCCAACGGTGCA--------------------TGTGATGGTGAGAACCAAC-GGCTGTT
GTTAATTGGCTTTTTGCCTTAATTACTGTTTACTGTATTCAGTAGGAGCTTTGTTTAGGCCATTTACCTCATGTTGAATA
CTAGTACATCCATCCTGGTTTATTGG-T-CCCTTTGTATTTTGTGTCAAATTTTAACTG--TAGATTTGACTAACAAAAT
ACAAATTGTATATCATAAAACTTACAT--TGTTGGATTCATA-T-CGAAAGAGGTTTTCAATGATACTACTTTTGTGGTA
TATAACTTATTATTTGATAGTTAAATCAAAGATCAAAGTTTGATCCAAAATATAAGGGGGGCTAATAAACCAAAATGGAG
GTAGTAATAAAGAATTCGCCAAAATTTAGTTCCTTAGATTAATTAGAAGTAGAGGCGATTATCTTCTCAACTATCCCGTA
ATTTACCCACAAATTCC-AAAAAACACTTCTCAGTTCTTTGACCGATT--
>chr4D_1026
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---------------------AATCAGGAAACTG-CATCGACCAGACAAAACGAAAACGTGACGGCAAACAGTTCCGTGC
CACCCTCCTCCACTGGTCAATCCCCATCCCCTGTTCCGTTCATACATCTA---CCTCCGCCGCCGCCATGCCGCCGGCCG
GCAGCCTCACCGCCGACCAGCTCAGCTTCTTCGAGAAGAACGGTGAGCACGTCTTCGTCGCACCTCATCTCCCCCAACCT
CTCTGTCTCCCAGCAGCCGGTGGGCGGCTCCCCCAATCTCGAAATTAGCAGCGGAAGCCCTAATCCCAATCCTGCGTGGG
CTCTCGTTGGTCCCAGGCTACCTGGTGCTGGAGTCGTTCTCGGGCGCGGAGGAGGTTCAGGCGATGCGGGACCGCATGGC
CCAGCTCGTCGACGGCTTCGACGGCGCTGACTCCAGTGTCTTCTCCACTAAGGATCATGTATGTCTTCTCGAACTTGCCT
TATTTGTTCAGACCTCAGAGGGAT--ACTTTTGACCTGCCAAATAATAACTGCC------AGCTTTATAGGCGTGTGCCA
GTCTGCCACTTACAGTTCTCCAGATAACTAGCTTCAAATTTCACTTGATAGATTTGATCTCTAGTCTCACATGCTGCCTG
ATCTGGATTTGTATTTCCCGAATAATTTTGTTTTCCTATGCAGCGGCAGTTGAAGGACGACTACTTCTTTAAGAGTGCAG
AGAATATATCTTTCTTCTTCGAGGGTACGTGATTTCTGTCATCTTGGACTTGTGGGGAATGAGTTACCCTTGTCAATTAG
GAATCACCAATCTGTAGCATTTATCATTCATGCTCCTTGAACTAGGAGGTGCTAGGTAATTTGTTAGAA-----------
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---------------------------------------------------------------------------AAGAA
GATATA--AGTTGCAGCGTCACATATGGCGGCGAACTGTGCTGCTAGTTCTGTAATTCTGTTCCTGCTTTACATCCTAGC
TCTTGATGGTGATTTCTCTCTTGTCACTTTGCGGTTTGTGTGACCACAGAAAAGGCATTTGGAGATGACGGGTGCTTGAG
ACAGCCAAAGGAACTTTCAATTAATAAAGTTGGACATGGTTAGTATGCCCACGATGCAATCAAATTCAGAGATAAATTAT
TTTACATGTTTGTCTTTTCAACTATATGATCAACTGGTTCTTGTGA-TATCATTTTACTGTTTAAGTTGCATGGACCAAG
TATTTGTTGCCCCATGTGTGAAACAACAAGGAAATTCCCTATTCACTGAAAAGCGATAAAATTGAGTATATTTTGAAA-A
AAAATGCATCTGATTTAAAGGTGCTGGTGTTAATAATTTTAAGCACAATCATGTGGCATTTCAGTGGGCTGCGCTGTTCT
TATCTGGAAAAATG--------AGTTCAGACTTGCATTTAAGTCTGCTGTCTATAATTCCATTAATCTGGAGTTAAGTCA
AAAGTGTGTGTGGTTCAGGTTA--TTTTCCCATCTGGAGCTA-----------------------------TTTTCTTGT
T--TACGAGTTAACATTCTCTATGGTGTGGGTTG--------------------------CTTCTTTTTTATATGCTTGC
ATATTTTCATGATGACATAATTTCTCAACTATTTAGATATATAACCTTCACCATGTTATATTTTATGCAGCACTACATGA
ACATGACCCTGTGTTCAAAAAGTTTGCTTTCTCGGAGAATATTTCTAGCCTGTTCTCTTCTTTAGGGTACAAGAGACCTG
CAGTTATTCAATCTATGTACATCTTTAAGGTACCTTTTGAAGGCTCT--AGTTAGTTTTCATATGATATGCATGTTTTAT
TCTTTGTTATTGACTTTGTTTTCTTCACATTTCAGCAACCGGGCATTGGTGGCGAGGTGGTGCCACACCAGGATAATACA
TTCCTTTATACAGAGCCTCTATCATGCACAGGATTGTGGCTTGCACTTGAAGATGCAACAATTACCAACGGTTGCCTATG
GGCAATTCCGGGATCACATAAAAGTATGTGACATTACCAAATTATTTAACCCAAAAAGTTCTGTTGCTATCAGACTATCT
ATTTATATTATTTTTT-------ACATTTGCAATGTTCTTGACCAGATGGTCTAAAAAGGCGAATGATCAGAGATGAAAA
TGGTACTCATTTTGATCGCCCCTCCCCGCTTTATGACCAAAAAGAGTTTGTACCACTGGAAATGAAATCAGGTGACTTTG
TTGTTATTCACGGCGATCTTGTACATCAGAGGTGAATTTCCTTTCTATATCGCAGTTGCTTCCTTGTTGCTGTTTTCTTT
CTTACCTTTCGCTAACATGCTTTAGCTTTCTTTCACAGCTTTGAGAACCTTTCTCCAGTGTCAAGACATGCACTGAGCTT
ACATGTAGTTGACATGGAAGGATGTAAATGGTCCAAGGACAACTGGTTAGTTCATGATGGAGCGACAACGGTTCAGTTGC
AAATTATATTTTTTAGATTTTATTTGCTCCAGATGGTGTCACATAATTAACTGTCAGAACTAGAAGGACAGCGAAATGAG
CCCTAGTGTTCACTGAACTTGGCAAACACATGCTTCCTCCTCAAACCAAGCTGCTGGTTTTAGACAAGCATAGTTTTCTA
TTGCTGTGCAACAGTTTCATAATAACTGAAGACGTATTTGGTTACCCATGAAGAAAAATGAAACATGATA--GTGTGAGT
GTAGTACTTGTTCATGTTAGGTTAATACTTTTGCTACTTGTTTGGTTATGTTAGTCGTAATACTTGAGGTTATTCTGTCG
GGTGTCCAACGATATAGCACTCTGATCTTAGAATTAGAAGGTTGCATGTGCTGACAAAGCATATGCCACACCATATGCAA
CATCCTGGAAATACCTAGTGATTTGTGTACACGGACTTGTTGATTTTACTCACTCTAACATGA----TTTTTATGTTTGT
TTCTCAGGATACAGAGGAAAACTGCGCCTGAACCGCTCTATGTGTCTTAGTTCAGCCAGTTACTAATAAACGTGATATCT
TCAGCAAGCAGTTTCAGTTGCTTATGATCGGTGCAGTGAAATTTGGGAACGCCGCGGAGCAATGCTTGTTTCTTTGTTGT
CTTTCACATGTGTACACTGTAAATACTGAATACTTGCTGTTGTGTTGTCATGATATCAGTTACTATCTGCAATCCTGAAA
TAAATCCAATTTCCTCCTCAGAATCTGTCGCGGCTACTT-TTTGTTTCATGAGCAGGTATCATGATAACTGCTCACTATT
TCTTATTTTCGGTGTGATTTTCTAATTTCGTGGTATTTT-CAATGTACCGTTTCCAAATATAAACAATCACTAGGAAATC
ATGCGCGTAAAACTGGGCCATTTATCTAAAAAAAAAA---CTCGGCCATGTTCTGCAAACTCAT---AGTCTGATGACAT
AAGATCAACTTAGCAGAGCCAGGTCCTAGCAGGAGAGGAATCTCAACATATATCCCTCAGTAATCCATGAGAGCAACACA
AGTGAGGAGCACATTCAGTTATCCAACGGTGCACAGTTATCCACCGGTGCACGTGTGATGGTGAGATCCAA--GGCTGTT
GTTAATTGGCTTTTTGCCTTAATTATTGTAATTTAGTTAACCCAGGGGCTTTGTTTAGGCCATTTACCTCATGTTGAGTA
CTAGTACCTCCGTCCTGGTTTACTGATT-CCCTTTGTATTTTGTATCAATTTTTTTTACCATAGATTTGACTAACAAAAT
GTAAATTGTATGTCACAAAACTTACATTATATTGGATTCATATT-CGAAAGAGGTTTTCAATAATACTATTTTTATGGTA
TATAACTTATTATTTGATAGTTAAATCAAAGGTCAAAGTTTGAACCAAAATATAAGGGGA-CTAATAAATCAGGACAT-G
GTTGTAATAAAGAATTCGCCAAAATTTAGTTCCTTAGATTAATTAGAAGTAAAGGCGATTATCTTCTCAACTATCTTGC-
ATTTTATCCCAAATTCT-AAAAAACCCTTCTCAGTTCTTTGACTGATTCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
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---S---S-S----------------------------------------S--S-------------S------SS----
----------------------S-S--------S----------------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---S-S-S----------------
--------------------S--------------S---------------------------S----------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
---------------SS--------S----------------------------------------------S-------
-----------------------------------------S--------------------------------------
------------S-----------------------------------S--------------S------S---------
--------------------------S-----------------------S---------------S-------------
---------S----S-----------------------S---SS----------SS------------------S-S---
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
------------------------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-----S----------S--S--------S---------------S------------------S--S--------S----
----S----------------------------------------S----------------------------------
----------------------------------------------------S-----------------S---------
-----------------SS---------------------S-------------SS-------------S----S-----
---S--------------SSS-----------------S--------S------S-----------S----S-------S
--------S--------S-S---------S-----S------S-----------------------------S-------
---S-S-------SSSSSSSSS------S-------S------S----------------------------S-------
-------S----S--------SSS---S-S---------------S--------S--------S----S-----S-----
-SS----------S----------------S-------------------------------------S---------S-
--------S---------S------S--S----------------------------S----------------------
---------S----------------------------------------------------------------------
-----------------------------------------------SS----------S----------S------S--
----SSSSSS---------------------------------------------------------------------S
-----------S-----------S--S-----------------------------------S-----S-----------
-----------------------------S-S-------------S--S-S-----------------------------
--SS-SSS-S-S----SSSSSSS---------------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------S-----------------
--------S-------------------------------------------S---------------------------
-------------------------------------------S------------------------------------
-----S--------S--------------------------------S--------------------------------
-------------------------------------------------------------------------------S
------------------------------S---------S---S---S-------------------------------
--------------------------------------------------S---S-SSS-SSSSS---------------
-------------S---------------------------------------------------------S-------S
-----S-----------------S-------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------S---------------S-----------S-------------------S----
----------------------------S---------------------------------------------------
---------------------------S----S----SSS---S-----------------------SS-SSSSSS----
---------------S-----------------------------------------SS---------------------
------------------------------------------------------------------------S-----S-
---------------S----------------------------------------------------------------
-------------------------SSSS---------S-----------------S--SSS------------------
-------------------------S-----S------------S---SS-S----------S-----------------
----------------S-------------S------------S------SS-----S-------S--------------
--S----------------S---------------------------------S--S-----------------------
-----------------S--------S----SS-----------------
>forward_1781
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-GTCGAAGGAAATGCCGATGC-----------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3595
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--------------------------------------------------------------------------CCCAAG
AATGTGTTGTCCCA------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2496
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------ACCT
CTCTGTCTCCCAGCAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_4344
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-----------------------CTGTACAGGATTGTGGCTTGC------------------------------------
--------------------------------------------------------------------------------
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>forward_3344
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--------------------------------------------TGTGCTGCGAGTTCTGTTCT----------------
--------------------------------------------------------------------------------
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>reverse_5241
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----------------------------------------TTTGTGTGCGCTGACAAAGC--------------------
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--------------------------------------------------
>forward_3710
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----------GCAGCTGATTTAGACGGTGC--------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_5374
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-------------AAGGAAAACTGCGCCTGAAC-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>forward_3753
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----------------------------------------------------GTTGCATTTCAGTGGACTGCA-------
--------------------------------------------------------------------------------
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>reverse_5799
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--------------------------------------AACTCAGCCATGTTCTGCAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
