>input_sequence_24245
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-----------------------------------------------------------CCCTCTCCTCCTCTTCAAAGA
CCACCACTCCTCCCTCCCTCCCCCGACGCCCACCCCGAGGCCAGGCCAGGGATCCCGAATGCAATCGCGGGCCGCAGTCG
CCTAGCCGCCGCGAGGGCTCCACAGCGCGATCGAGGAGGGAGGGGGCTCCGCAGGC----------GAGGGCTAGCTGCG
TGGCGCGTGCGCCGGGGTTGGATGAGAAGGGCGAGGGCGGCGGCGGAGGAGGAGGATGCGGAAGGCGTACAGGGACTCCC
TCAAGGTGCTCGAAGCTGACATCCAGCACGCCAACACCCTGTAAGCGCCCCCGATTCCGACGCCCCGTCTCCGAATTTCG
CCCCAAATTTGCCTGCTCGCCGCCCGCTCTCCCCTTCCTCGGTGAGAGGGATCGGCCCATGGGTTTCCGTGGGGCTCGTG
GGACGCCTCGAGCGTCCGCCGCGACCGAGCAATGCGGCCTGCGAGATCGATCGACCGACCGACCGATCGGTGGGTGGGTG
GGTGGGTGAACCGCGCGTCGGCGCCTCCGGTTCCTCAGGCGGAATTCATAGCGGGGGTTGGTCTGGCATGGCAGTCATTT
AGACTGGCATTATTATCATTATCCGTGTGCCCACGGGCGGTGGAATGGTGGCAGATCAGCAGCGGGAGGAGGAAGAGATC
ACATGTGTTCCCCATGTCATATTAAAACACTCTGCCCCATGTGTTTGCGTTCTAAATTATGCTAATCCTTTAGACGAAAA
GGGGGAGGATAAGGCAGCTAGTGCGATTCAGGGCAAGGGAGTGGGATCTCTGACCTCAAGTGATCTATCTGACGTGCAGG
GCGACTGAATTTCCGCGGGAGTACGATGGGGCGTGCCTGCAGATGCGGCTGTCGTTTAGCCCCGCCGCGCACATATTCCT
CTTCCTGGTGCAGTGGACGGACTGCAGCCTCGCTGGGGCTCTCGGATTGATGAGGATCCTCATATACAAGGTTCCGTTGC
TTGTTCAACCTCATCATGGCTGTTGGTTCGCTGCTCGTGCTTTAATGAGATTGTAGCTCGTCCTGCAGGTCTACGTCGAT
GGCACAACCACCATGTCGACCCATGAGAGGAAAGCCAGCATCAAGGAATTCTATGGTATGAGATGAGTTCCTTGT-----
---TACTTTAGCCGAAGGTCTGACTATGCTGCTTGTATACTGATTGTACTGTTTTATTGACTGGAATTGTTATACAGCTG
TAATATTTCCTTCTTTGCTGCAACTGCAAAGAGGGATCACTGATATGGAGGACAAGAAGCAGAAGGCCGTGTGTATGGAG
AGGTACAGAAGGAGAGATGAAGACGAAACAAGCAGCTTATCTGATGTTGATGCTGAGAGGGAGGAGGAATGTGGGATCTG
CATGGAGATGAACAGCAAAGTTGTGTTGCCCAACTGCACACATGCGATGTGTCTCAGATGCTATCAGGACTGGTATGCAC
AAACTTTCAGCTTCTCCCCATGCGTTTCGTGTGATTGCATTTCAGTGGCGTATAACCCTCCCACACCCTACCAAACATTG
AGGCGTTGATAATGTGGCTTTATAGATAGGTTTTCGCCTCTCTCTAGTGCCTCGTGTTATGTATGTTGGCTACACTCCCT
ATTATCCTTCTGTCGCATGGATGT--CTCTTGAGAATAATGGAAGTT-----TACACCCCACAAAACCAAATGTGGAGCT
GTTTATAGCGTTGACTTGTGGATAAGCTTATGCCTCATTTTCAGGTTGCTTCTCCACATTCCTGTTCTTATAGCCTTATA
CACAATATCAAGCCTTCTAAATATGGCATCATTTTGATTTCGAGTGGCTAAACAGAACAGGAATAGTACTTTCTGAATGA
TGCAGCAATTTTTG-TTATGTATCTCCATTACTATGGGTTCCATCATACATTCCTGAAATGAGCAACACCCTACAAAGTG
GACGTCCAATTTGCAAACTGCGGATAGTCTAAAAATGCATTGACTGACGACTTGAGACTTCCCTGAACTGTATTCTGTTG
TTCTTTGCTCTGAACAACATAACTATGTATTTTATTGAGCACTGACTGTTCTATTAGTTTTTGGTCCAGTTTGTGTACAT
GCTTTTTGTGCACCATCTGTGTAATCCAGACAGTGTGCTTTGTCAATTAATTAGGGATATGATAGTGTAGGCTTAGGTCG
TACTTACATTTACTTTAGCTGGCCATTCACTAGTTAGACGCTGTGTGGGTTCTGCAGATCAACGTAGTTTCATGTTTTTG
AAAACGCTTATAGTGCCATGTGGTGATTCATGTGTTTACTGTATCAGTTG-TTTAACAACTTCCACGTGGTGTTCCTACA
ATAGATATGATC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTTTCTTTTCTTGCAGCCCA
TGAACAGCTTATCTGGCAGCATAACATGGAATGTTCTCCTATACTTCTGGAGCTGCCATGTAGTTACGACCGTTACAACG
TCTGTTTGTTGTTCCAAAACAATGTTTTAACAGAAAAATTATTGTATATTGCAGGAACTCGAGGTCACAGTCCTGCCCAT
TCTGCCGCGACAACTTGAAGAAGACTGACCCTGGTGACTTGTGGATTTACGTCGAGGACGACGACGTGGTCGACATGGAG
ACGGTATCAAGAGAGAACCTCAGACGGCTGTTCATGTACATAAACAAGCTCCCTCTGATCGTGCCTGATGTCATCTTCAG
TGTCTACGATTCCCACATAAAATGAATGGTGCGGCACTCCCCTTATCAAGGTCCTCAGCCAAGTGCCCAGCTCCT-----
TTTAATCTATTTGGGAAGCTCCCCCAAGCTCTCTGGTTTCCATGCCTGTACCCAAGCCCTTCGAAGTGCCTGAACTGTCG
CATTTGTAGTCGCAAACCTTTTGTTTGTGCTTTAGATCT--TATTTAGTGCGTACCTGCATGCTTAAGCTAAGCATATCC
AGCCAGTTTGTATATATCTCACATGGCTCTGTTAATAGAGAACTGTAGCTGGCCCCAAATGGAGGCGGTGCTGTTTAATA
TCCTTCCATGT-TTCCCCCCTTTGTATAACTGTCTTCAGGTTTGAGCACTGAAGCTGGTACTTGTTTCTTAAGATTTTTC
TTCGCAGTTTGCATCTGTAATTTTC-------------------------------------------------------
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-----------------------------------------------------------------
>chr1A_1_TraesCS1A01G169300
CCCTAACCTAAACTACTAATCGTAGCGGAGGTGCCGAGATTCTTCTCCCCTTCCCCGGCCGCTGGAGCGGCAGGCAGATG
GGAGGCGAATTCATAGATTAACCGATGAAGTCTGGAGAGGAGAGTTTGTCCTGACTGTCTAGGGTCTGGAAAGAAAAACA
AGAGGAAGTCAAACAACCACAACGCGACTTGTGAATGCACTCAACTTCTGGGATTATGATTTTGTCTATCCGTGACATTT
GGTGAGGTTCATTTTAGTTGCATTGGAGTTGCCCTAAGAGATATACACACAACTAGTACTACTGTTTCACACTTTAGCGT
TTTGGGATTATTTATTTTTCATTAGATGCCTATAATGCGCCGAGACTGAGGGAGTACTTTGTTGATACATGACACATCTC
ATTCTCTCACACGGGGTCTAGAAGCATGTGTTGCAGCCCGCTGTAAATCAATAGCCCATTTTTCCTTTTTTTAACTTATT
AAAGATATACAATATTTAAAATCTTACATCCTCGCTACATCATCTTATTATACTTTTCTACACACGTTCGAGAGTGTAGC
GGAAAGAATTGCCTAGCCAGTACGAGAGTATTGGAGCTTTGCGTACCTAACGAGAGCGACTGCGTAACCAGATACACGAT
CCCAGACACGGCTGTATTCTACACA------------CTG----GTACGGAGCATCTGCCCGCAACGCAGGTAGTAAATC
CAATCCGGCC---GGAGAGGCGGTTAAGCGATAGCGATAACACATCGACCCGATCGAGCGGCACCTCACGTTGTTCCTCC
GCAGCCTTGTCGTCGGTTCCCTGTACACGCGCCTCTTACCACGGGCCCGGCTCCACCTCCCTCACGCTTCCCGACGCATC
CACACCCGCCGCGCCACACGTGTCGCCGCCCCGCCCCCGCCCCGGCGCGCGCTCCTCCTCCCTCCTCCCCCCAGTCCGCG
CATCCGGCACGCACGCACGGCACACTCGCCTCCCCATTCCTTCCCCCCTCCCCCCTCCCCCCTCTCCTCCTCTTCAAAGA
CCACCACTCCTCCCTCCCTCCCCCGACGCCCACCCCGAGGCCAGGCCAGGGATCCCGAATGCAATCGCGGGCCGCAGTCG
CCTAGCCGCCGCGAGGGCTCCACAGCGCGATCGAGGAGGGAGGGGGCTCCGCAGGC----------GAGGGCTAGCTGCG
TGGCGCGTGCGCCGGGGTTGGATGAGAAGGGCGAGGGCGGCGGCGGAGGAGGAGGATGCGGAAGGCGTACAGGGACTCCC
TCAAGGTGCTCGAAGCTGACATCCAGCACGCCAACACCCTGTAAGCGCCCCCGATTCCGACGCCCCGTCTCCGAATTTCG
CCCCAAATTTGCCTGCTCGCCGCCCGCTCTCCCCTTCCTCGGTGAGAGGGATCGGCCCATGGGTTTCCGTGGGGCTCGTG
GGACGCCTCGAGCGTCCGCCGCGACCGAGCAATGCGGCCTGCGAGATCGATCGACCGACCGACCGATCGGTGGGTGGGTG
GGTGGGTGAACCGCGCGTCGGCGCCTCCGGTTCCTCAGGCGGAATTCATAGCGGGGGTTGGTCTGGCATGGCAGTCATTT
AGACTGGCATTATTATCATTATCCGTGTGCCCACGGGCGGTGGAATGGTGGCAGATCAGCAGCGGGAGGAGGAAGAGATC
ACATGTGTTCCCCATGTCATATTAAAACACTCTGCCCCATGTGTTTGCGTTCTAAATTATGCTAATCCTTTAGACGAAAA
GGGGGAGGATAAGGCAGCTAGTGCGATTCAGGGCAAGGGAGTGGGATCTCTGACCTCAAGTGATCTATCTGACGTGCAGG
GCGACTGAATTTCCGCGGGAGTACGATGGGGCGTGCCTGCAGATGCGGCTGTCGTTTAGCCCCGCCGCGCACATATTCCT
CTTCCTGGTGCAGTGGACGGACTGCAGCCTCGCTGGGGCTCTCGGATTGATGAGGATCCTCATATACAAGGTTCCGTTGC
TTGTTCAACCTCATCATGGCTGTTGGTTCGCTGCTCGTGCTTTAATGAGATTGTAGCTCGTCCTGCAGGTCTACGTCGAT
GGCACAACCACCATGTCGACCCATGAGAGGAAAGCCAGCATCAAGGAATTCTATGGTATGAGATGAGTTCCTTGT-----
---TACTTTAGCCGAAGGTCTGACTATGCTGCTTGTATACTGATTGTACTGTTTTATTGACTGGAATTGTTATACAGCTG
TAATATTTCCTTCTTTGCTGCAACTGCAAAGAGGGATCACTGATATGGAGGACAAGAAGCAGAAGGCCGTGTGTATGGAG
AGGTACAGAAGGAGAGATGAAGACGAAACAAGCAGCTTATCTGATGTTGATGCTGAGAGGGAGGAGGAATGTGGGATCTG
CATGGAGATGAACAGCAAAGTTGTGTTGCCCAACTGCACACATGCGATGTGTCTCAGATGCTATCAGGACTGGTATGCAC
AAACTTTCAGCTTCTCCCCATGCGTTTCGTGTGATTGCATTTCAGTGGCGTATAACCCTCCCACACCCTACCAAACATTG
AGGCGTTGATAATGTGGCTTTATAGATAGGTTTTCGCCTCTCTCTAGTGCCTCGTGTTATGTATGTTGGCTACACTCCCT
ATTATCCTTCTGTCGCATGGATGT--CTCTTGAGAATAATGGAAGTT-----TACACCCCACAAAACCAAATGTGGAGCT
GTTTATAGCGTTGACTTGTGGATAAGCTTATGCCTCATTTTCAGGTTGCTTCTCCACATTCCTGTTCTTATAGCCTTATA
CACAATATCAAGCCTTCTAAATATGGCATCATTTTGATTTCGAGTGGCTAAACAGAACAGGAATAGTACTTTCTGAATGA
TGCAGCAATTTTTG-TTATGTATCTCCATTACTATGGGTTCCATCATACATTCCTGAAATGAGCAACACCCTACAAAGTG
GACGTCCAATTTGCAAACTGCGGATAGTCTAAAAATGCATTGACTGACGACTTGAGACTTCCCTGAACTGTATTCTGTTG
TTCTTTGCTCTGAACAACATAACTATGTATTTTATTGAGCACTGACTGTTCTATTAGTTTTTGGTCCAGTTTGTGTACAT
GCTTTTTGTGCACCATCTGTGTAATCCAGACAGTGTGCTTTGTCAATTAATTAGGGATATGATAGTGTAGGCTTAGGTCG
TACTTACATTTACTTTAGCTGGCCATTCACTAGTTAGACGCTGTGTGGGTTCTGCAGATCAACGTAGTTTCATGTTTTTG
AAAACGCTTATAGTGCCATGTGGTGATTCATGTGTTTACTGTATCAGTTG-TTTAACAACTTCCACGTGGTGTTCCTACA
ATAGATATGATC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTTTCTTTTCTTGCAGCCCA
TGAACAGCTTATCTGGCAGCATAACATGGAATGTTCTCCTATACTTCTGGAGCTGCCATGTAGTTACGACCGTTACAACG
TCTGTTTGTTGTTCCAAAACAATGTTTTAACAGAAAAATTATTGTATATTGCAGGAACTCGAGGTCACAGTCCTGCCCAT
TCTGCCGCGACAACTTGAAGAAGACTGACCCTGGTGACTTGTGGATTTACGTCGAGGACGACGACGTGGTCGACATGGAG
ACGGTATCAAGAGAGAACCTCAGACGGCTGTTCATGTACATAAACAAGCTCCCTCTGATCGTGCCTGATGTCATCTTCAG
TGTCTACGATTCCCACATAAAATGAATGGTGCGGCACTCCCCTTATCAAGGTCCTCAGCCAAGTGCCCAGCTCCT-----
TTTAATCTATTTGGGAAGCTCCCCCAAGCTCTCTGGTTTCCATGCCTGTACCCAAGCCCTTCGAAGTGCCTGAACTGTCG
CATTTGTAGTCGCAAACCTTTTGTTTGTGCTTTAGATCT--TATTTAGTGCGTACCTGCATGCTTAAGCTAAGCATATCC
AGCCAGTTTGTATATATCTCACATGGCTCTGTTAATAGAGAACTGTAGCTGGCCCCAAATGGAGGCGGTGCTGTTTAATA
TCCTTCCATGT-TTCCCCCCTTTGTATAACTGTCTTCAGGTTTGAGCACTGAAGCTGGTACTTGTTTCTTAAGATTTTTC
TTCGCAGTTTGCATCTGTAATTTTCATGCTATAAAATTATATTACTAAAGTTGTACTACTCCCTCCGTCACGGTTTAGAA
GGCGCGCTTGAAAATTCTCTAGGACCTAGTTGCTTATCTATTGGTTGTGAAATGGACTAAAAAATAGCATTCTTACTATG
CGTGCATATAAAAGTAGTACTAAATAGCTACTAGAAATAAATGCAATGCGCCCTAAACATTGTTTATTGTGAAAACGTAC
GCAAATTTAACTGTGTTTTAAACTGTGACGGAGGGAGTACTAAAGCTGTGACAATTAATATGGACAGGAGAGAGTACTAA
TTAATGCTTGTGAAATTGACATACTCCCTCCTTTCTGGTTTATAGGGCTTATTATTTAAAATTTTAATTTCTCCATTTCA
TAAGGCTTAATTTGGTTGTTTCTCATCACATATTCAGATTCTAAGGTGCATTAAATCATTGCATGTAAGAATTAAGAGAA
AATTGATCAATGCATGTACTTTATGCATGCATGCATTGCAATTAATGCATTCATAAACATAATTTTTTAGAAAAACAAGA
GTATTAGTTAGGTACTTTTGCAAACTACAAAAAGTATTTCACCACTCATCATCTACCTTGGTTTGTGAAATTTTTAAATT
GAGCCCTATAAATCGAAAAAAAGAGAGTAACAATAAGGAGTTGCATTAAATCATATTCTCTTGCTGCAAAGTGATAATAC
TACAGTGAAGTTGGCCGACTACTTCCAATGCATTGGCACTTACATAAAGTGCTAAACATATTGAAAACTTTAACAACTAA
AACCCCCAATACATAGGCGCTTAACTTGTTGGTGCTAAGCATCCATTTAATAATTTTGCAAATAAAATTCTTCATTCATT
GATGGGATTGTTTCATTTAAGTCTATTGCCTAGGTTTTTCGCGCTTAGCATTGTTTCTTTCTGGATCGCCATCCTCATCT
CTCTCGTCTTAATTACCTTGTCACATCAGTTTTTTTTGCCTACATAGCAGTCTTAGCACCTATAC
>chr1D_552
GAGTT---------------------------------------------------------------------------
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----------------------------------------------------------------------------TAGC
GGAAATAATTGCCTAGCCAGCACGAGAGTATTGGAGC-TTGTGTACCTAACGAGAGCGACTGCGTAACCAGACACACGAT
CCGAGACACGGCTGTATTCTACACTCTCCTACTCCCGCTG----GTACGGAGCATCTGCCCGCAA--------GTAAATC
CAACCCGGCCGGAGGAGAGGCGGTTAAGCGATAGCGATAACACATCGACCGGATCGAGCGGCACCTCACGTTGTTCCTCC
GCAGCCTTGTCGTCGGTTCCCTGTACACGCGCCTGTTACCACGGGTCCGGCTCCACCTCCCTCACGCTTCCCGACGCATC
CACACCCGCCGCGCCACACGTGTCGCCG------CCCCGCCCCGGCGCGCGCTCCTCCTT-------CCCCCAGTCCGCG
CATCCGGCACGCACGCACGGCACACTCGCCTCCCCATTCCTTCCCCCCT---------CCCCTCTCCTCCTCTTCAAAGA
CCACCACTCCTCCCTCCCTCCCCCGACGCCCACCCCGAGGCCAGG-----GATCCCGAATGCAATCGCGGGCCGCAGTCG
CCTAGCCGCCGCGAGGGCTCCACAGCGCGATCGAGGAGGGAGGGGGCTCCGCAGGC----------GAGGGCTAGCTGCG
TGGCGCGTGCGCCGGGGTTGGATGAGAAGGGCGAGGGCGGCGGCGGAGGAGGAGGATGCGGAAGGCGTACAGGGACTCCC
TCAAGGTGCTCGAAGCTGACATCCAGCACGCCAACACCCTGTAAGCGCCCCCGATTCCGACGCCCCGTCTCCGAATTTCG
CCCCAAATTTGCCTGCTCGCCGCCCGCTCTCCCCTTTGCCGGTCGGAGGGATCGGTCCATGGGTCTCCGTGGGGCTCGTG
GGACGCCTCGAGCGTCCGCCGCGGCTGCGCAATGCGGCCTTGGAGATCGATCGACCGACCGACCGATC----GGTGGGTG
GGTGGGTGAACCGCGCGTCGGCGCCTCCGGTTCCTCAGGCGGAATTCATAGAGGGGGTTGGTCTGGCATGGCAGTCATTT
AGACTAGCATTATTATCATTATCCGTGTGCCCACGGGCGGTAGAATGGTGGCAGATCAGCAGCGGGAGGAGGAAGAGATC
ACATGTGTTCCCCATGTCATATTAAAACACTCTGCCCCATGTGTTTGCGTTGTAAATTATGCTAATCCTTTGGACGAAAA
GGGGGAGGATAAGGCAGCTAGTGTGATTCAGGGCAAGGGAGTGGGATCTCTGACCGCGAGTGATCTATCTGACGTGCAGG
GCGACTGAATTTCCGCGGGAGTACGATGGGGCGTGCCTGCAGATGCGGCTGTCGTTTAGCCCCGCTGCGCACATATTCCT
CTTCCTGGTGCAGTGGACGGACTGCAGCCTCGCTGGGGCTCTCGGATTGATGAGGATCCTCATATACAAGGTTCCGTTGC
TTGTTCAACCTCATCATGGCTGTTGGTTCGCTGCTCGTGCTTTAATGAGATTGTAGCTCGTCGTGCAGGTCTACGTCGAT
GGCACAACCACCATGTCGACCCATGAGAGGAAAGCCAGCATCAAGGAATTCTATGGTATGAGATAAGTTCCTTGT-----
---TACTTTGGCCGAAGTTCTGACTATGCTGCCTGTATACTGATTGTACTGTTTTATTGACCGGAATTGTTATACAGCTG
TAATATTTCCTTCTTTGCTGCAACTGCAAAGAGGGATCACTGATATGGAGGACAAGAAACAGAAGGCCGTGTGCATGGAG
AGGTACAGAAGGAGAGATGAAGACGAAACAAGCAGCTTATCTGATGTTGATGCTGAGAGGGAGGAGGAATGTGGGATCTG
CATGGAGATGAACAGCAAAGTTGTGTTGCCCAACTGCACACACGCGATGTGTCTCAGATGCTACCAGGACTGGTATGCAC
AAACTCTCAGCTTCTCCCCATGCGTTTCGTGTGATTGCATTTCAGTGGCGTATAACCCTCCCACACCCTACCAAACATTG
AGGCGTTGATAATGTGGCTTTATAGATAGGTTTTCGCCTCTCTCTGCTGCCTCGTGTTATGTATGTTAGCTACACTCCCT
ATTATCCTTCTGTCGCATGGATGTGTCTCTTGAGAATAATGGAAGTT-----TACACCCCACAAAACCAAACGTGGGGCT
GTTTATAGTGTTGACTTGTGGATAAGCTTATGCCTCATTTTCAGGTTGCTTCTCCACATTTCTGTTCTTATAGCCTTATA
CACAATATCAAGCCTTCTAAATATGGCATCATTTTGATTTCGAGTGGCTAAACAGAACAGGAATAGTACTTTCTGAATGA
TGCAGCAATTTTTTTTTATGTATCTCCATTACTATGGGTTCCATCATACATTCCTGAAATGAGCAACACCCTACAAAGTG
GATATCCAATTTGCAAACTGCGGATAGTCTAAAGATGCATTGACTGACGACTTAAGACTTCCCTAAACTGTATTCTGTTG
TTCTTTGCTCTGAACAACATAACTCTGTATTTTATTGAGCACTGACTGTTCTCCTCGTTTTTGGTCCAGTTTGTGTACAT
GCTTTTTGTGCACCATCTGTGTAATCCAGACAGTGTGCTTTGTCAATTAATTAGGGATATGATAGTGTAGGTTTTGGTCG
TACTTACATTTACTTCAGCTGGCCATTCACTAGTTAGACGCTGTGTGAGTTCTGCAGATCAACGTAGTTTCATGTTTCTG
AAAAAGCTTGTAGTGCCATGTGGTGATTCATGTGTTTACTGTATCAGTTTTTTTAACAACTTCCACGTGGTGTTTCTACA
ATAGTTATGATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTTTCTTTCCTTGCCGCCCA
TGAACAGCTTATCTGGCAGCATAACATGGAATGTTCTCCTATACTTCTGGAGCTGCCATGTAGTTACGACCCTTACAACG
TCTGTTTGTTGTTCCAAAACAATGCTTTAACAGAAAAA-TATTGTATATTGCAGGAACTCGAGGTCACAGTCCTGCCCAT
TCTGCCGCGACAACTTGAAGAAGACTGACCCTGGTGACTTGTGGATTTACGTCGAGGACGATGACGTGGTCGACATGGAG
ACGGTATCAAGAGAGAACCTCAGACGGCTGTTCATGTACATAAACAAGCTCCCTCTGATCGTGCCTGATGTCATCTTCAG
TGTCTATGATTCCCACATAAAATGAATGGCGCGGCACTCCCCTTATCAAGGTCCTCAGCCAAGTGCCCAGCTCCTAAATA
TTTAATCTATTCCCAAAGCT--CCCAAGCTCACTGGTTTCCATGCCTGTACCCAAGACCTTCGAAGTGCCTGAACTGTCG
CATTTGTAGTCGCAAACTTTTTGTTTGTGCTTTAGATCT--TATTTAGTGCGTACCTGCATGCTTAAGCTAAGCATATCC
AGCCAGTTTGTATATATCTCACATGGCTCTGTTAATAGAGAACTGTAGCTTGCCCCAAATGGAGGCGGTGCTGTTTGATA
TCCTCCCATGTTTTCCCCCCTTTGTATAACTGTCTTCAGGTTTGAGCACTGAAGCTGGTACTTGTTTCTTAAGATTATTC
TTTGCAGTTCGCATCTATAATTTCCATGCTATAAAATTATATTACCAAAGCTG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr1B_552
GAGGGTAGCGGGTA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--AAAAAGTTGCCTAGCCGGTACGAGAGTATTGGAGC-TTGTGTACCTAACGAGAGCGACTGCATAACAAGACGCACAAT
CCGAAACACGGCTGTATTCTACACTCTCCCACTCCTACTGGTACGTACGGAGCATCTGCCCGCAA--------GTAAATC
CACCCCGGCC---GGAGAGGCGGTTAAGCGATAGCGATAACACATCGACC----CGAGCGGCACCTCACGTTGTTCCTCC
GCAGCCTTGTCGTCGGTTCCCTGTACACGCGCCACTTACCACGGGTCCGGCTCCACCTCCCTCACGCTTCCCGACGCATC
CACGCCCGCCGCGGCACACGTGTCGCCG------CCCCACCCCGGCGCGCGCTCCTCCTT-------CCCCCAGTCCGCG
CATCCGGCACGCACGCACGGCACACTCGCCTCCCCATTCCTTCCCC---------TCCCTCCTCTCCTCCTCTTCAAAGA
CCACCACTCCTCCCTCCCTCCCCCGACGCCCACCCCGAGGCCAGG-----GATCCCG-ATGCAATCGCGGGCCGCAGTCG
CCTAGCCGCCGCGAGGGCTCCACAGCGCGATCGAGGAGGGAGGGGGCTCCGCAGGCCGGGCGCCGCGAGGGCTAGCTGCG
TGGCGCGTGCGCCGGGGTTGGATGAGAAGGGCGAGGGCGGCGGAGGAGGAGGAGGATGCGGAAGGCGTACAGGGACTCCC
TCAAGGTGCTCGAAGCTGACATCCAGCACGCCAACACCCTGTAAGCACCCCCGATTCCGACGCCTCGCTCCTGAATTTCG
CCCCAAATTTGCCTGCTCGCCGCCCGCTCTCCCCTTTGTCGGTGGGAGGGATCGGTCCATGGGTTTCCGTGGGGCTCGTG
GGACGCCTCCAGCGTCCGCCGCGGCTGCGCAATGCGGCCTGGGAGATCGATCGACCGAT----CGATC----GGTGGGTG
GGTGGGTGAACCGCGCGTCGGCGCCTCCGGTTCGTCAGACGGAATTCATAGCGGCGGTTGGTCTGGCATGGCAGTCATTT
AGACTAGCATTATTATCATTATCCGTGTGCCCACGGGCGGTGGAATGGTGGCAGATCAGCAGCGGGAGGAGGAAGAGATC
ACATGTGTTCCCCATGTCATATTAAAACACTCTGCCCCATGTGTTTGCGTTGTAAATTATACTAATCTTTTAGACGAAAA
GGGGGAGG-----------------ATTCAGGGCAAGGGAGTGGGATCTCTGACCGCAAGTGATCTATCTGACGTGCAGG
GCGACTGAATTTCCGCGGGAGTACGATGGGGCGTGCCTGCAGATGCGGCTGTCGTTTAGCCCCGCCGCGCACATATTCCT
CTTCCTGGTGCAGTGGACGGACTGCAGCCTCGCTGGGGCTCTCGGATTGATGAGGATCCTCATATACAAGGTTCTGTTGC
TCGTTCAACCTCATCATGGCTGTTGGTTCGCTGCTCGTGCTTTAATGAGATTGTAGCTCGTCGTGCAGGTCTACGTCGAT
GGCACAACCACCATGTCGACCCATGAGAGGAAAGCCAGCATCAAGGAATTCTATGGTATGAGATGAGTTCCTTGTTACTT
ACTTACTTTAGCCGAAGGTCTGACTATGCTGCCTGTATACTGATTGTACTGTTTTATTGACTGGAATTGTTATACAGCTG
TAATATTTCCTTCTTTGCTGCAACTGCAAAGAGGGATCACTGATATGGAGGACAAGAAGCAGAAGGCCGTGTGTATGGAG
AGGTACAGAAGGAGAGATGAAGACGAAACAAGCAGCTTATCTGATGTTGATGCTGAGTGGGAGGAGGAATGTGGGATCTG
CATGGAGATGAACAGCAAAGTTGTGTTGCCCAACTGCACACATGCGATGTGTCTCAGATGCTATCAGGACTGGTATGCAC
AAACTTTCAGCTTCTCCCCATGCGTTTCGTGTGATTGCATTTCAGTGGCGTATAACCCTCCCACACCCTACCAAACATTG
AGGCGTTGATAATGTGGCTTTATAGATAGGTTTTCTCCTCTCT--AGTGCCTCGTGTTATGTATGTTAGCTACACTCCCT
ATTATCCTTCTGTCGCATGGATGT--CTCTTGAGAATAATGGAAGTTTACATTACACCCCACAAAACCAAACGTGGAGCT
GTTTGTAGTGTTGACTTGTGGATAAGCTTATGCCTCATTTTCAGGTTGCTTCTCCACATTCCTGTTCTTATAGCCTTATA
CACAATATCAAGCCTTATAAATATGGCATCATTTTGATTTCGAATGGCTAAACAGAACAGGAATAATACTTTCTGAATGA
TGCAGCATTTTTTTT-TATGTATCTCCATTACTATGGGTTCCATCGTACATTCCTGGAATGAGCAACACCCTACAAAGTG
GATGTCCAATTTGCAAACTGCGGATAGTCTAAAAATGCATTGACTGACGACTTAAGACTTCCCTGAACTGTATTCTATTG
TTCTTTGCTCTGAACAACATAACTCTGTATTTTATTGAGCACTGACTGTTCTCCTAGTTTTTGGTCCAGTTTGTGTACAT
GCTTTTTGTGCACCATGTGTGTAATCCAGACAGTGTGCTTTGTCAATTAATTAGGGATATGATAGTGTAGGCTTAGGTCG
TACTTGCATTTACTTTAGCTGGCCATTCACTAGTTAGACGCTGTGTGGGTTCTGCAGATCAACGTAGTTTCATGTTTTTG
AAAACGCTTATAGTGCCATGTGGTGATTCATGTGTTCACTGTATCAGTTT-TTTAACAACTTCCACGTGGTGTTCCTACA
ACAGATATGATCTACTCCCTCCGTTCTTAAATATAAGTCTTTGTAGAGATTCTACTATGAACCACATACGGATGTATATA
GATGCATTTGAATTGTAGATTCATTCATTTTGCTCCGTATGTAGTCTACCTAGTGGAATCTCTACAAAGACTTATACTCC
CTCCGTCCGGAAATAGTTGTCATCAAAATGAATAAAAAGGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCCTTT
TTGTCTATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATTTAGGAACGGAGGGAGTATTATCTTTTCTTGCAGCCCA
TGAATAGCTTATCTGGCAGCATAACATGGAATGTTCTCCTATACTTCTGGAGCTGCCATGTAGTTACGACCGTTACAACG
TCTGTTTGTTGTTCCAAAACAATGCTTTAACAGAAAAA-TATTGTATATTGCAGGAACTCGAGGTCACAGTCCTGCCCAT
TCTGCCGCGACAACTTGAAGAAGACTGACCCTGGTGACTTGTGGATTTACGTCGAGGACGATGACGTGGTCGACATGGAG
ACGGTATCAAGAGAGAACCTCAGACGGCTGTTCATGTACATAAACAAGCTCCCTCTGATCGTGCCTGATGTCATCTTCAG
TGTCTATGATTCCCACATAAAATGAATGGCGCGGCACT-CCCTTATCAAAGTCCTCAGCCAAGTGCCCAGCTCCT-----
TTTAATCTATTTCCGAAGCT--CCCAAGCTCTCTGATTTCCATGCTTGTACTCAAGCTCTTCGAAATGCCTGAACTGTCG
CATTTGTAGTCGCAAACCTTTTGTTTGTGCTTTAGGTCTTATATTTAGTGCGTACCTGCATGCTTAAGCTAAGCATATCC
AGCCAGTTTGTATATATCTCACATGGCTCTGTTAATAGAGAACTGTAGCTTGCCCCAAATGGAGGCGGTGCTGTTTAATA
TCCTCCCATGTTTCCCCCCCTTTGTATAACTGTCTTCAGGTTTGAGCACTGAAGCTGGTACTTGCTCCTTAAGATTATTC
TGCGCAGTTCGCATCAACTG--TTCATGTTATAAAATTATATTGCTAAAGTTGTAC------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-----S-------------------------------S---S------------------------------S-------
--S---------------------S----------------------------------------SSSSSSSS-------
---S----------------------------------------------S-----------------------------
---------------------------------------------S----------------------------------
----------------------------SSSSSS-------------------------SSSSSSSS-------------
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---------------------------------------------SSSSS------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SS------S----------S------------------------
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--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------------S----------------------------
-----------------------S-------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------------------------------S--------
--------S-----------------------------------------------------------------------
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-------------S------------------------------------------------------------------
--S--------------------------------------------------S--------------------------
------------------------S---------------------------SS--------------------------
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-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------S-------------S-----------------------------------------
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------S----------------------S--------------------------------------------------
------------SS------SS----------------------------------------------------------
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--------------------------------------------------S-----------------------------
----S-----------------------------------------------------------------------S---
---------S------S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_371
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATAATGCGCCGAGACTGAGG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_2063
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CTGCAGGTCTACGTCGAT
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1816
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGGAGTGGGATCTCTGACCT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_4101
--------------------------------------------------------------------------------
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--------------------CCCCCAAGCTCTCTGGTTTC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_2193
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------CGAAGGTCTGACTATGCTGCT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4480
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
GGCGCGCTTGAAAATTCTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
