>input_sequence_24209
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--------------------------------------------------------ATGGCGCTGGCTATCCTGGCGAGG
CGGAGGGCGGCGGAGGCCGTGGCGCGGCGGGCGCACGCCCCCGGTGCGGCGGCGCTGTCCGCGTGGAGGGCGTACGCGGC
GGCGGCGG------AGGAGAGCGACGTCGTGGTGGTCGGCGGCGGGCCGGGAGGGTACGTGGCGGCCATCAAGGCGGCGC
AGCTGGGGCTCAAGACCACCTGCATCGAGAAGCGGGGCACCCTCGGCGGGACCTGCCTCAACGTCGGGTGCATCCCCTCC
AAGGTGATTGATTTTGATTGACTGGTGACGCCCTCTCCGTTTGTTTGCTGTCCCGTTCATTCGCGGTGCGATGCGAGGTG
A---CGCCGACTGTTCTTAGATCTGTGATGCGTGGCTATTAATTACTAGGTTC---------------------------
---TTGTCGTTCGTTGTAGCTCGTGTGGCGTTGCTTTTATTAATTGATTGAT---GATTTGATTATGAGGCGCCTGTTTG
TGATGCATCAACTATGGTCTTGCAGCGGGGTAGCATTTTGGACTAT----GAAACTAGGGTTTGAGTTCGCTTGATTAGA
GGTCTTTTGCCATATACTGCCATGATTAGAGGTCTT-ATGCATTATCTTTTGTGACCCAGAATTGAAATTACGTCAAATT
CAGTTTTATTATGTGTTTGTAAATTTCTTCCACCGCGAGATTTGGTTGGTTTTCATTAAGCTTAGGCCACAAAGTTTGTT
ATTCCAACTTGCAAGCATCATCGGAGTAACTTAATTTTGTTTTCTTTATAGCTATTTTTTGTTCCAGTTAGACTTTGTAG
TTTGTACCCTTATAATTTCCGTATACACTTGTAAGGACTTCATTTG-----CAATCAGTTAAAATGTGTCTAATTTTTTT
AACCTTGCTAACAATATAGTACTCGCTCCATTCCACGTTGTAGTGTACATAGTTTTTTCTTGAAGTCAAACATCACAAAG
TTTGACCAAGTTTATTGAGAAAATATCAACAATAATAATACAAAATAGATATAATACGGAAATCTATCTTGTGTTT----
TATGTAGTGATATGAATTTGATAATATATACGTAGATACTTTTCTCTATAAACTTGGTTAAAGTTGATGAAGTTCGACTT
CCTAAAAAATCTATATGCACTAAATTATGGAACAGAGGGAGTACGTCAT-------------------------------
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-------------AAATGGGCAAAGGGCTTTCTGCAGTTTTCCCCCAAAGAGTTGACCAGAATACTGTTCCTGCAAAAAG
--AAGTATCAAGTCTCGT--------------------------------------------------------------
-------------------------------------ATACAAGCTAAACTTGCTCTTGTTCGAGATAAATGTCTACACG
GTAATTCAACTTCTCATAAGGTAGGAAGATTGGC-------TAGGAAGAGACGTAGTGGGGATAGACACAGAAGTTAGAT
GGGTAGGGATAGCAACTAGCCAACTAGA----------------------------------------------------
-----------------------------------------------------AGGGAAAGAGTGCATTTCTTGATTCCC
TCTTACAATAGGGATACATCCCCCATATAGACCTTCTAAGTCGATTACACGGAACAGTAGGTCCACTTTGTAACAGCTGG
AACCATATCCTAACATGCAAAGTCAACAGCATAATTTGACTCCCAAGACAAGGACTCCTAATTGGGTACAAACTCTAGCA
TAGTTGGATACACTATTGCAACTTTGCAAGGTTGGATATTACTAATA--TATGTCTACAACATCTTTCTTACAGGCCTAT
CATCTGTATAGCTCCTACATAAGATTTATGTTGTAGCTTAGGATTCTCTTGGCATAAGATTAACATCTTTATCTGGAAGC
TAAACATTTGATGTATTTCTTCTATGTGAACAAGTGCACCTAGAGAATTATCTACGTTGGTGATATATCCTTGCAGATGT
ACTTATTGGGAACACTTCTAACTTCCTTCCATGCTTCTGATCCACCAGGCTCTGTTGCACTCTTCTCATATGTACCATGA
AGCAAAGACTTCTTTTGCACACCATGGAGTGAAAATCTCTAATCTGGAAGTGGATCTCCCAGCCATGATGGCGCAGAAAG
ACAAGGCTGTGGCCGGATTAACAAAAGGAATCGAGGGCCTCTTTAAGAAGAACAAAGTGACATATGTCAAAGGCTTTGGG
AAACTTACTTCCCCGTCAGAAGTTTCGGTTGATTTGGTTGATGGTGGCAACACAGTCGTCAAAGGAAAAAACATAATCAT
TGCCACTGGGTCTGATGTAAAATCACTTCCTGGGATTACAATTGACGAGAAGAAGATTGTCTCATCCACTGGTGCCCTGT
GTTTGTCGGGTATCCCAAAGAAAATGGTTGTCATTGGAGCTGGTTACATTGGCCTGGAAATGGGTTCAGTCTGGAACCGT
CTTGGGACAGAGGTCACTGTTGTTGAATTTGCTCCAGACATAGTCCCATCAATGGATGGTGAAATCAGGAAGCAGTTCCA
GCGCATGCTGCAGAAGCAGAAGATGAAGTTTATGCTCAAGACAAAGGTGGTCGGAGTTGATACCTCTGGAGACGGGGTGA
AGCTAACACTTGAGCCTGCAACTGGTGGTGAGCAGAGCATCCTTGAAGCAGACATCGTTCTAGTCTCTGCTGGGAGGACC
CCATATACCGCCGGGCTTGGGCTGGATGCCATTGGGGTTGAGATGGACAAGGCTGGCAGGATCCTCGTTGATAAGCGGTT
CATGACCAATGTGAGTGGAGTGTATGCGATTGGCGATGCCATCCCTGGGCCCATGCTTGCCCACAAAGCTGAAGAGGATG
GCGTGGCATGTGTCGAGTTCCTTGCTGGCAAGGAAGGTCACGTTGACTATGATTTGGTGCCTGGTGTGGTCTACACACAT
CCAGAGGTGGCATCCGTCGGGAAGACGGAGGAGCAGGTGAAGGCCTCAGGAATTGCCTACCGAGTTGGCAAATTCCCGCT
GATGGCAAACAGCCGTGCGAAGGCTATTGATGATGCCGAGGGGATGGTTAAGGTGGTGGCTGACAAGGAAACCGACAAGA
TTCTTGGCGTGCACATAATGGCGCAGAATGCTGGAGAGATCATCCATGAAGCTGTGCTTGCCCTGCAGTATGGAGCATCC
AGCGAGGATGTTGCCCGGATATGCCATGCACATCCCACTGTGAGTGAAGCCCTCAAGGAGGCTTGCTTGCAAACCCATTC
CAAGGCCATCCACATATGA-------------------------------------------------------------
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>chr1B_1_TraesCS1B01G084700
TCACAATACATTCGTAAACTTCTT----GTGTTTA-CCCATTGACAAATCTCTTGATTGGTCTCGTATGCTGCGTCAGCT
ATTTAGACTTGAAGATGTGGCCATGGGAATATGGATCCAGCAATACAAAGACAGTGGTCAGCAAGTGAACTATGCCAACG
ATGAGCGCTTCTACAACGAAGGATGCGACTCTGATTACGTCCTTGCCCACTATCAAAGCCCGAGGCTCATGATGTGCTTG
TGGGAGAAGCTCCAGAAGGAATCTCAAGCGGTATGCTGCGAATAACTATGAATCAGCGTCAGCAAGGGGCCGTGCAAGGA
CGTGATAGATTAGT----TAGTGTTGTTGTTGTTGCTGTTGTTGTTGCTGCTGGTGGTGATGTTGTCGGTGGTGGTGTGC
ATCCAGCATTTTTACTTGGGTGGGAAGTTTGTGTGTAACGGTTGTAACAACCGGCGATCATCGTTCTTTTGTTCCGATCA
ACGGCTTCGTTTCACGGA--AGAGTGTGTCGATCCATGTAAAATATGGATGTTGTTCTTAAATGAGACTTTGAAACATAT
TGCTAATTAGCGATCTTGAGCTTTTCATATGTTTGTCCCCAGCGATAAACTCAATGGTAAATAAACCATGCATAACTCAA
AATTTTCAACTTGAGAATGGTAGATTCGGCGAAAATGCTGGTGTTGAAACAGATTGATTGAATGAGAAGCATGCCATGGT
TTTCAGTGGCTCTAAAAGAGAAGTAGAGATAGCAAAATAAATTGACTTGTGAGGGCAGAGCCTCCCCAGGATCCCAGTGG
TCTACAAGGCCATATCCATCCTTTGCAGGATTGGGTGTTGGCTGTGAGCCAGCAGCATCCCTCTCGGCCCAACGTACGGC
AGCAC-----ACACATTCCCGCCACGTCCGGCCCCGGGCCCGGCCCGGTAGAGAACAAATAACTTTTATCGACCAGATGC
CATAGGCGCTTCCCATCCTCTCCTGTCGAAGAAAGGAAACAGAGGAAGGCAGGGAGATGGCGCTGGCTATCCTGGCGAGG
CGGAGGGCGGCGGAGGCCGTGGCGCGGCGGGCGCACGCCCCCGGTGCGGCGGCGCTGTCCGCGTGGAGGGCGTACGCGGC
GGCGGCGG------AGGAGAGCGACGTCGTGGTGGTCGGCGGCGGGCCGGGAGGGTACGTGGCGGCCATCAAGGCGGCGC
AGCTGGGGCTCAAGACCACCTGCATCGAGAAGCGGGGCACCCTCGGCGGGACCTGCCTCAACGTCGGGTGCATCCCCTCC
AAGGTGATTGATTTTGATTGACTGGTGACGCCCTCTCCGTTTGTTTGCTGTCCCGTTCATTCGCGGTGCGATGCGAGGTG
A---CGCCGACTGTTCTTAGATCTGTGATGCGTGGCTATTAATTACTAGGTTC---------------------------
---TTGTCGTTCGTTGTAGCTCGTGTGGCGTTGCTTTTATTAATTGATTGAT---GATTTGATTATGAGGCGCCTGTTTG
TGATGCATCAACTATGGTCTTGCAGCGGGGTAGCATTTTGGACTAT----GAAACTAGGGTTTGAGTTCGCTTGATTAGA
GGTCTTTTGCCATATACTGCCATGATTAGAGGTCTT-ATGCATTATCTTTTGTGACCCAGAATTGAAATTACGTCAAATT
CAGTTTTATTATGTGTTTGTAAATTTCTTCCACCGCGAGATTTGGTTGGTTTTCATTAAGCTTAGGCCACAAAGTTTGTT
ATTCCAACTTGCAAGCATCATCGGAGTAACTTAATTTTGTTTTCTTTATAGCTATTTTTTGTTCCAGTTAGACTTTGTAG
TTTGTACCCTTATAATTTCCGTATACACTTGTAAGGACTTCATTTG-----CAATCAGTTAAAATGTGTCTAATTTTTTT
AACCTTGCTAACAATATAGTACTCGCTCCATTCCACGTTGTAGTGTACATAGTTTTTTCTTGAAGTCAAACATCACAAAG
TTTGACCAAGTTTATTGAGAAAATATCAACAATAATAATACAAAATAGATATAATACGGAAATCTATCTTGTGTTT----
TATGTAGTGATATGAATTTGATAATATATACGTAGATACTTTTCTCTATAAACTTGGTTAAAGTTGATGAAGTTCGACTT
CCTAAAAAATCTATATGCACTAAATTATGGAACAGAGGGAGTACGTCAT-------------------------------
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-------------AAATGGGCAAAGGGCTTTCTGCAGTTTTCCCCCAAAGAGTTGACCAGAATACTGTTCCTGCAAAAAG
--AAGTATCAAGTCTCGT--------------------------------------------------------------
-------------------------------------ATACAAGCTAAACTTGCTCTTGTTCGAGATAAATGTCTACACG
GTAATTCAACTTCTCATAAGGTAGGAAGATTGGC-------TAGGAAGAGACGTAGTGGGGATAGACACAGAAGTTAGAT
GGGTAGGGATAGCAACTAGCCAACTAGA----------------------------------------------------
-----------------------------------------------------AGGGAAAGAGTGCATTTCTTGATTCCC
TCTTACAATAGGGATACATCCCCCATATAGACCTTCTAAGTCGATTACACGGAACAGTAGGTCCACTTTGTAACAGCTGG
AACCATATCCTAACATGCAAAGTCAACAGCATAATTTGACTCCCAAGACAAGGACTCCTAATTGGGTACAAACTCTAGCA
TAGTTGGATACACTATTGCAACTTTGCAAGGTTGGATATTACTAATA--TATGTCTACAACATCTTTCTTACAGGCCTAT
CATCTGTATAGCTCCTACATAAGATTTATGTTGTAGCTTAGGATTCTCTTGGCATAAGATTAACATCTTTATCTGGAAGC
TAAACATTTGATGTATTTCTTCTATGTGAACAAGTGCACCTAGAGAATTATCTACGTTGGTGATATATCCTTGCAGATGT
ACTTATTGGGAACACTTCTAACTTCCTTCCATGCTTCTGATCCACCAGGCTCTGTTGCACTCTTCTCATATGTACCATGA
AGCAAAGACTTCTTTTGCACACCATGGAGTGAAAATCTCTAATCTGGAAGTGGATCTCCCAGCCATGATGGCGCAGAAAG
ACAAGGCTGTGGCCGGATTAACAAAAGGAATCGAGGGCCTCTTTAAGAAGAACAAAGTGACATATGTCAAAGGCTTTGGG
AAACTTACTTCCCCGTCAGAAGTTTCGGTTGATTTGGTTGATGGTGGCAACACAGTCGTCAAAGGAAAAAACATAATCAT
TGCCACTGGGTCTGATGTAAAATCACTTCCTGGGATTACAATTGACGAGAAGAAGATTGTCTCATCCACTGGTGCCCTGT
GTTTGTCGGGTATCCCAAAGAAAATGGTTGTCATTGGAGCTGGTTACATTGGCCTGGAAATGGGTTCAGTCTGGAACCGT
CTTGGGACAGAGGTCACTGTTGTTGAATTTGCTCCAGACATAGTCCCATCAATGGATGGTGAAATCAGGAAGCAGTTCCA
GCGCATGCTGCAGAAGCAGAAGATGAAGTTTATGCTCAAGACAAAGGTGGTCGGAGTTGATACCTCTGGAGACGGGGTGA
AGCTAACACTTGAGCCTGCAACTGGTGGTGAGCAGAGCATCCTTGAAGCAGACATCGTTCTAGTCTCTGCTGGGAGGACC
CCATATACCGCCGGGCTTGGGCTGGATGCCATTGGGGTTGAGATGGACAAGGCTGGCAGGATCCTCGTTGATAAGCGGTT
CATGACCAATGTGAGTGGAGTGTATGCGATTGGCGATGCCATCCCTGGGCCCATGCTTGCCCACAAAGCTGAAGAGGATG
GCGTGGCATGTGTCGAGTTCCTTGCTGGCAAGGAAGGTCACGTTGACTATGATTTGGTGCCTGGTGTGGTCTACACACAT
CCAGAGGTGGCATCCGTCGGGAAGACGGAGGAGCAGGTGAAGGCCTCAGGAATTGCCTACCGAGTTGGCAAATTCCCGCT
GATGGCAAACAGCCGTGCGAAGGCTATTGATGATGCCGAGGGGATGGTTAAGGTGGTGGCTGACAAGGAAACCGACAAGA
TTCTTGGCGTGCACATAATGGCGCAGAATGCTGGAGAGATCATCCATGAAGCTGTGCTTGCCCTGCAGTATGGAGCATCC
AGCGAGGATGTTGCCCGGATATGCCATGCACATCCCACTGTGAGTGAAGCCCTCAAGGAGGCTTGCTTGCAAACCCATTC
CAAGGCCATCCACATATGATTTTTCCTTTTTCTGTTATTACTTGTCTCAGGAAGTTCCAAAATTTTGTAATAATTTTGGA
TGTATGGGAACAAAAAGCGTATGATTGTCATTTCTCGCCCTGTCGGCGATACTGTGAATTAACAGTTGCCAGTGCCACAG
GTTCATTGTACATGCCATTGAATTTATGTTTACTTCTTAGGCCCTGCTACAT-TGGAGTGAGGCGTGTTGGAGACCGGGC
TCCAGGGAACCCGGTATTTTGAAGAAGACAAAAAAATG------CTATTTAGAAGTTTTAGAAAAATACA---ATTTATT
TGCAAGGATATATATAGATGTTTTTTTCATGCCTGTATGCAAAAAAGAAAAAAAATCCTTGCCCAGAAAGAACAAAAGGA
AGGCCCATTTTTATACACACATTTGTC-TTTTTTGTGTACTTCACGTATGAAAATGTATG--------------------
--TTGCTGGAAATTCATACACATATACTACACAGTTATATGTACTAGCTCATTGCATGCACGTTGTAACAGAGGCAAACA
TATTTTAGTGATTCAAAATACCAATTGTGAGTGGCTCAACAAAGACGTCGTGAGTTTTTTTTTATGGTCCTTCTCACATT
GACGTCATCGGCTTAAGATCGCGTTGTAGAATGTGAAGATGATGAAAAGGGAATGAGAGATTTTAGAAGGAGCCCACACA
AATAATATTTTCCCTAAACTAAGATGATCCTAAGATGATGAAAAGGGAACGAGAGATTTTAGGAGGAGCCCACATAAATA
ATATTTCACCTAAATTAAGCCGATCCTGGCTTGACAGCGCCTGGGCCATTATTCCTGCACAAGAGAGATGTAGGTGTGTT
TGATAGCCTGCATTCCCTCATCTATTATCTCCTTAACCCACTTTTCAGAGTTTGGTAGGATGTATGAACTTCCCTTAGCC
ATGCTCGCCTCATACCGAAACAGTCCAATAGCCATGCTCACATGGAACATGTTGATGCAGGTTCGCTGCTCGTCCATGCT
AAGTTCGACCTA
>chr1A_1
TCGCAATACGTTCATAAACTTCTC-CTTGTGTTTACCCCATTGGAAAATCTCTTGATTGATCTCGTTTGCTGCCTCAGCT
ATTTAGACTTGAAGACGTGGCGATGGGAATATGGATCCAGCGATACAAAGACAGTGGTCAGCAAGTGAACTACGCCAACG
ATGAGCGCTTCTACAATGAAGGATGCGACTCTGATTACATCCTCGCCCACTATCAGAGCCCGAGGCTCATGATGTGCCTG
TGGGAGAAGCTCCAGAAGGAATCTCAAGCGGTATGCTGCGAATAACTCTGAATCGGCGTCAACAAGGGGCTGTGCAAGGA
CGTGATAGATTAGGTAGCTAGTCTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGT------GGTGGTGGTGTGC
ATCCAGCATTTTTATGTTGGTGGGAAGTTTGTGTGTAACGGTTGTAACAACCGGCGACCATCGTTCTTTTGTTCCGATCA
ACG-TTTCGTTTCACGGA--AGAGTGTTGATCCATGC-----ATATGGATGTTGTTCTCAAATGATACCTTGAAAGATAT
TGCTAACTAGAGATCTTGAGCTTTTGATATGTTTGTTCCCAGCGATGAAGTTAATGGTAAATAAACCATGCATAACTCCA
AAATTTCAACTTGAGAATGATAGATTTA-CGAAAATGCCGCTGTTGAAATAGATTGATTGAATGATTC------------
---TAGTGGTTCTGAAAGAGAAGTGGGGATAGCAAAATAAATTGACTTGTGAGGGCAGAGCCTCCCCAGGATCCCAGTGG
TCTACAAGGGCATATCCATCCTTTGCAGGATTGGGCGTTGGCTGTGAGCCAGCAACATCCCTCTCGGTCCAACGTACGGC
GGCAACACAAACACATTCCCGCCACGTA------CGGCCCGGGCCCGGTAGAGAACAAATAACTTTCATCGACGCTTCCC
ATCCT------------CTCTCCCGTCGAAGAAAGGAAACAGAGGA--------AGATGGCGCTGGCTATCCTGGCGAGG
CGGAGGGCGGCGGAGGCCGTGGCGCGGCGGGCGCACGCCCCCGGGGCGGCGGCGCTGTCCGCGTGGAGGGCGTACGCGGC
GGCGGCGG------AGGAGAGCGACGTCGTGGTGGTCGGCGGCGGGCCGGGAGGGTACGTGGCGGCCATCAAGGCGGCGC
AGCTGGGGCTCAAGACCACCTGCATCGAGAAGCGGGGCACCCTCGGCGGCACCTGCCTCAACGTCGGCTGCATCCCCTCC
AAGGTGATTG------A--------------CCTCTCCGTTTGTTTGCTGCCCCGTTCATTCGCCGTGCGATAAGAGGTG
A---CGCCGAGTGTTTTTAGATCTGTGATGCATGGCTATTACCCAAAAACGCTCTTATATTATGGGACGGAGGGAGTAGA
TTATTGTCGTTCGTTGTAGCTCATGTGGTGTCACTTTTATTGAT-------T---GATGTGATTATGAAGCGCCTGTTTG
CGATGCATCAACTCTGGTCTTGCAGCGGGGTAGCATTTTGGGCTAT----GCAGCTAGGGTTTGAGATCCCTTGATTAGA
GGTCTTTTGCAATCTACCGCCATGATTAGAGGTCTTTATGCGATATCTTTTGTGGCCCGGAATCAAAATTACGTCAAATT
CAGTTTTATTATGTGTTTGTAAATTTCTTCCACTGCGAGATTTGGTTGGTTTTCATTAAGCTT-----------------
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-------------------------------GGGTAATAAGGCATAATATTTGTTATTCCAACTTGTGAGCATCATCTGA
GTAGATTAATTTTGTTTGCTTTATAGCTAATTTTTGTTCCAGTTAGACTTTGTACCCTTATAAATTCTGTATACAGTACA
CTTGCGAGGACTTCATTTGCAATCAGTTAAATGGGTCTA------TTTTTTACCTTGCTAACAATATAGTAC--------
GTCATAAATGGTGAA---------GGGTTTACTGCAGTTTTTCCCCAAACAGTTGACCAGAATACTGTTCCTGCTAAAAC
AAAAGTATCAAGTCTCACCTTTACACGTGAGAGCGAAACATCTTTCTTACATGTTTATCCTTCCTACATGTCCAATGTAC
ATGATTTAGGCTATAC--------------------AATACAAGCTAAACTTACTCTTGTTCGAGATAAATATCTACACG
GTAACTCAACTTCTCATAAGGTAGGAAGATTGGTTAGGACTTAGGAAGAGACGTGGTTGGGATGGATAGATAAGTTAGCT
GTGTAGGGATAGCAACTAGCCAACTACTCCCTCCGTTCGGAATTACTTGTCACAGAAATGGATGTATTTAGATGTATTTT
AGTTCTAGATACATCCATTTCCGAGACAAGTAATTCCGAACGGAGGGAGTAGGAGGGAAAGAGTTCATTTCCTGCTTCCC
TCTTACAATAGGGATACATCTCTCATATAGACATTCTAAGTCGGTTACACTGAACAGCAAGTCCAGTTTGTAGCAGCTGG
AACCATATCCTAACATACAAAGTCAACAACATAATTTGAC-CCAAAGACAAGGACTCTTAATTGTATACAAACTCTAGCA
TAGTTGGACACACTAA--------TGCAAGGTTGGATATTACTAATATATATGTCTACAACATCTTTCTTTCAGGCCTAT
CATCTGTATAGCTCC----TAAGCTTTATGCTGTTAGAAA------TCTTAGCATAAGATGAGCACCTTTATCCGGAATC
TAAACATTTGATGTATTTCTTCTATGTGAACTAGTGCACCTAGAGAATTATGTACGTTGGTTATATATCCTTGCAGACGT
GAC---TGGGAACACTTCTAACTCCCTTTGATGCTTCTGATCTGCCAGGCTCTGTTGCACTCTTCTCATATGTACCATGA
AGCAAAGACTTCTTTTGCACACCATGGAGTGAAAATCTCTAATCTGGAAGTGGATCTCCCAGCCATGATGGCGCAGAAAG
ACAAGGCCGTGGCCGGGTTAACAAAAGGAATCGAAGGCCTCTTTAAGAAGAACAAAGTGACATATGTCAAAGGCTTTGGG
AAACTTACTTCCCCTTCAGAAGTATCGGTTGATTTGGTTGATGGTGGCAACACTGTTGTCAAAGGAAAGAACATCATCAT
TGCCACTGGATCTGATGTAAAATCACTTCCTGGGATCACAATTGATGAGAAGAAGATTGTCTCATCTACTGGCGCCCTGT
GCTTGTCAGGTATCCCAAAGAAAATGGTTGTCATTGGAGCTGGTTACATTGGCCTGGAAATGGGTTCAGTCTGGAACCGT
CTTGGGACAGAGGTCACTGTTGTTGAATTTGCTCCAGACATAGTCCCATCAATGGATGGTGAAATCAGGAAGCAGTTCCA
GCGCATGTTGCAGAAGCAGAAAATGAAGTTTATGCTCAAGACAAAGGTGGTCGGAGTTGATACCTCTGGAGACGGGGTGA
AGCTAACACTTGAGCCTTCAGCTGGAGGTGAGCAGAGCATTCTTGAAGCAGATATCGTTCTCGTCTCTGCTGGAAGGACC
CCATATACTGCCGGGCTCGGGCTGGATGCCATTGGGGTTGAGATGGACAAGGCTGGCAGGATCCTCGTCGATAAGCGGTT
CATGACCAATGTGAGTGGAGTTTATGCGATCGGCGATGCCATCCCTGGGCCCATGCTTGCCCACAAAGCCGAAGAGGATG
GTGTGGCATGTGTTGAGTTCCTCGCTGGCAAGGAAGGTCACGTCGACTATGACTTGGTGCCTGGTGTGGTCTACACACAC
CCGGAGGTGGCATCCGTTGGGAAGACGGAGGAGCAGGTGAAGGCCTCAGGAATTGCCTACCGAGTCGGCAAATTCCCGCT
CATGGCAAACAGCCGTGCGAAGGCTATCGATGATGCCGAGGGGATGGTTAAGGTCGTGGCTGACAAGGAAACCGACAAGA
TTCTTGGTGTGCACATAATGGCGCAGAATGCTGGAGAGATCATCCATGAAGCTGTGCTTGCCCTACAGTATGGAGCATCC
AGCGAGGATGTTGCCCGAATATGCCATGCACATCCCACTGTGAGTGAAGCCCTCAAGGAGGCTTGCTTGCAAACCCATTC
TAAGGCCATCCACATATGATTTTTCCTTTTTCTGTTATCACTTGTCTCAGGAAGTTCCAAAATTTTGTAATAATTTTGGA
TGTATGGGAACAAAAAGCGTATGATTGTCATTTC--GCCCTGTCGGCGATACTGTGAATTAACAGTTGCCAGTGCCACAG
GTTCATTGTACATGCCATTGAATTTATGTTTACTTCTTAGGCCCTGCTACAT-TGGAGTGAGGCGTGTTGGAGACCGGGC
TCCAGGGAACCTGGTATATTGGAGAAGAAAACAAAAAAATAAATCTATTTACAAGTTTTAGATG----------------
---------------------TTTTTTCATGCCTGTACGCAGAAAAGAAAAATTTCTG--GCCCAGGAAGAACAGAAGGA
AGGCCCATCTTTATACACATATTTGTC-CATTTTGTGTACTTCAGGTATGAAAATGTATG--------------------
--TTGCTGGAAATTCATACACATATACTATACAGTTAT--GTACTAGCTAATTGCCTGCACGTCGTAACCAAGGCAAACA
TATTTTAGTGATTCAAAATACCAATTATGAGTGGCTCGACAGAGACGTTGTGAGTTTTTTTATTCCTTCCCAC-------
-----------------ATCGTGTTGCAGAATGTGAAGATGATGAAAAGGGAATGAGGGATTTTAGGAGGAGCCCACATA
AATCATATTTTCCCTATACTAAGATGATCCTAAGATGATGAAAAGGGAACGAGAGATTTTAGGAGGAGCCCACATAAATA
ATATTTCCCCTAA-TTAAGGGGATCCTCGTTTGACAGCGCCTGGGCCATTATTCCTGCACAAGAGAGATGTAGGTGTGTT
TGATAGCCTGCATTCCCTTATCTATTATCTACTTAACCCATTTTTCGACGTTTGGTAGGGTGTA----------------
--------------------------------------------------------------------------------
------------
>chr1D_1
TCGCAATACATTCGTAAACTTCTTTCTTGTGTTTA-CCCTTTGACAAATCTCTTGATTGATCTCGTTTGCTGCCTCAGCT
ATTTAGACTTGAAGACGTGGCCATGGGAATATGGATCCAGCAATACAAAGACAGTGGCCAGCAAGTGAACTATGCCAACG
ATGAGCGCTTCTACAACGAAGGATGCGACTCTGATTACGTCCTCGCCCACTACCAGAGCCCGAGGCTTATGATGTGCTTG
TGGGAGAAGCTCCAGAAGGAATCTCAAGCAGTGTGCTGTGAATAACTCTGAATCAGTGTTAGCACGA-GCCGTGCAAGGA
CGCGGTAGATCAGTTAGTC----------TTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGT------GGTGGTGGTATGC
GTCCAGCATTTTTATGTGGGTGGGAAGTTTGTGTGTAACAGTTGTAACAACCGGCGATCATCGTTCTTTTGTTCCGATCA
ACGTTTTTGTTTCACGGAAGAGAGTGTTGATCCATGT-----ATATGAATGTTGTTCTCAAATGAGACTTTGAGAGAGAT
TGCTAACTAGAGATCTCGAGCTTTTCATATGTTCGTTCCCAGCGATGAAGTTAC-GGTAAACAAACCATGCATAACTCAA
GAAATTTAACTTGAACACGACAGATTTC-TGAAAATGCCGTGTTTGAAACAGATTGATTGAATGAGAAGCATGCCTTGCT
TTTTAGTGGTTCTGAAAGAGAAGTAGGGATAGCAAAATAAATTGACTTGTGAGGGCAGAGCCTCCCCAGGATCCCAGTGG
TCTACAAGGCCATATCCATCCTCTGCAGGATTGGGTGTTCGCTGTGAGCCAGCAACATCCCTCTCGGCCCAACGTACGGC
CG--C-----ACACATTCCCGCCACGTCCGGCCCCGGCCCCGGCCCGGTAGAGAACAAATAACTTTTATCGACCAGATGC
CATAGGCGCTTCCCACCCTCTCCTGTCGAAGAAAGGAAACAGAGGA--------AGATGGCGCTGGCTATCCTGGCGAGG
CGGAGGGCGGCGGAGGCGGTGGCGCGGCGGGCGCACGCCCCCGGGGCGGCGGCGCTGTCCGCGTGGAGGGCGTACGCGGC
GGCGGCGGCGGCGGAGGAGAGCGACGTCGTGGTGGTCGGCGGCGGGCCGGGAGGGTACGTGGCGGCCATCAAGGCGGCCC
AGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCACCCTCGGCGGCACCTGCCTCAACGTCGGATGCATCCCCTCC
AAGGTGATTG------ATTGACTGACGACGCCCTCTCCGTTTGTTTGCTGTCCCGTTCATTCGCGGCGCGATGCGAGGTG
ACGCCGCCGAGTGTTTCTAGATCTGTGATGCATGGCTATTAATTAGGTTCTC----------------------------
-----GTCGTTCGTTGTAGCTCATGTGTTGTTACTTTTATTAAT-------TTATGATGTGATGATGAAGCGCCTTTTTG
TGATGCATGAACTCTGGCCTTGCAGCGGGGTAGCATTTTGGGCTATATATGCAGCTAGGGTTTGAGTTCCCTTGATTAGA
GGTCTTTTGCAATCTACCGCCATGATTAGAGGTCTT-ATGCATTATCTTT-GTGGCCAAGAATTGAAATTATGTCAAATT
CAGTTTTATTATGTGTTTGTAAATTTCTTGGACCGCGAGATTTGTTTGGTTTTCATTAAGCTTAGGCCACAAAGTTTGTT
ATTCCAACTTGCAAGCATCATCTGAGTAACTTATTTTTGTTTTTTTATAACCA--TTTTTTTTCCAGTTAGACTTTGTA-
------CCCTTATAATTTCTGTATACACTTGTAAGGATTTCATTTGATTTGCAATCAGTTAAATGTGTCTA----TTTTT
AACCTTGCTAACAATATAGTACTCCCTCCATTCCACAATGTAGTGCGCATGGTTTTTTCTTGAAGTCAAACATCACAAAG
TTTGACCAAGTTTATTGAGAAAATATCAACAATAATAATACAAAATAAATATAATACAGAAGTCTATCTTGTGCTTTATA
TATGTAGTGATATGAATTTGATAATATATACGTAGATACTTTTCTCTATAAACTTGGTTAAAGTTGATGAAGTTTGACTT
CCTAAAAAATCTATATGCACCACATTATGGAACAGAGGGAATATGTCATAATTAGGTTCTTGTCGTTCGTTGTAGCTCAT
GTGTTGTTACCTTTCATTAATTAATGTGATGTGATTATGAGGCGCCTGTTTGTGATGCATCAACTCTGGTATTGCCGCGG
GGTAGCATTTTGGACTATGCAGCTAGGCTTTGAGTTCCGTGATTATTAGAGGTCTTTTGCAATATACCGCCATGATTAGA
GGTCTTTATGCGTTATCTTTGTGGCCCAGAATTGAAATTACGTCAAATTCGGTTTTATTATGTGTTTGTAAATTTCTTCC
ACTCTGAGATTTGGCTGGTTATCATTACCTTGGGTAATAAGGCTT-ATATTTGTTATTCCAACTTGTGAGCATCATCTGA
GTAAATTATTTTTGTTTGCTTTATAGCTA-TTTTTGTTCCAGTTAGGCTTTGTACCCTTATAATTTCTGTT-----TACA
CTTGCGAGGACTTCATTTGCAATCAGTTAGATGGGTCTATTCATTTTTTTTACCTTGCTAACAATATAGTACTACTATCT
GTCATAAATGGTGAAATGGGCAAAGGGTTTTCTGCAGTTTTTCCCCAAACAGTTTACCAGAATACTGTTCCTGCTAAAA-
AACAGTATCAAGTCTCATCTTTATGTGTGAGAGCGAAACATCTTTCTTACATGTTTATCCTTCCTATATCTTCAA--TAT
ATGATTTAGGCTATATGATTCTCTCGAGTCTTATAAAATGCAAGCTAAACTTACTCTTGTTCGAGTTAAATATCTACACG
GTAACTCAACTTCTCATAAGGTAGGAAGATTGGC-------TAGGAAGAGATGTAGTGGGGATAGATACAGAAGTTAGAT
GGGTAGGGATAGCAACTAGCCAACTAGA----------------------------------------------------
-----------------------------------------------------AGGGAAAGAGTTCATAAGGTA------
--------------------------------------------------GGAACAGCAAGTCCAGTTTGTAACAGTTGG
AATCATATCCTAACATACGAAGTCAACAACATAATTTGACTCCCGAGATAGGGACTCCTAATTGGGTACAAAC------A
TAGTTGGATACACTAA--------TGCAAGGTTGGATATTACTAATA--TATGTCTACAACATCTTTCTTATAGGCCTAT
CGTTTGTATAGCTCCTACATGAAATTTATGTTGTAGCTTAGGATTCTCTTAGCATAAGATGAACATCTTTATCTGGAATC
TAAGCATTTGATGTATTTCTTCTATGTGAACAAGTACACCTAGAGAATTATCTACGTTGGTGATATATCCTTGCAGATGT
GCTTATTGGAAACACTTCTAACTTCCTTCAATGCTTCTGATCCACCAGGCTCTGTTGCACTCTTCTCATATGTACCATGA
AGCAAAGACTTCTTTTGCACACCATGGAGTGAAAATCTCTAATCTGGAAGTGGATCTCCCAGCCATGATGGCGCAGAAAG
ACAAGGCCGTGGCCGGGTTAACAAAAGGAATCGAAGGCCTCTTTAAGAAGAACAAAGTGACATATGTCAAAGGCTTTGGG
AAACTTACTTCCCCTTCAGAAGTTTCGGTTGATTTGGTCGATGGTGGTAACACTGTTGTCAAAGGAAAAAACATAATCAT
TGCCACTGGATCTGATGTAAAATCACTTCCTGGGATTACAATTGACGAGAAGAAGATTGTCTCATCCACTGGCGCCCTGT
GCTTGTCAGGTATCCCAAAGAAAATGGTTGTCATTGGAGCTGGTTACATTGGCCTGGAAATGGGTTCAGTCTGGAACCGT
CTTGGGACAGAGGTCACTGTTGTTGAATTTGCTCCAGACATAGTCCCATCAATGGATGGTGAAATCAGGAAGCAGTTCCA
GCGCATGTTGCAGAAGCAGAAAATGAAGTTTATGCTCAAGACAAAGGTGGTCGGAGTTGATACCTCTGGAGACGGGGTGA
AGCTAACACTTGAGCCTGCAGCTGGAGGTGAGCAGAGCATCCTTGAAGCAGACATCGTTCTCGTCTCTGCTGGAAGGACC
CCATATACCGCCGGGCTCGGGCTGGATGCCATTGGGGTTGAGATGGACAAGGCTGGCAGGATCCTCGTCGATAAGCGGTT
CATGACCAATGTGAGTGGAGTGTATGCGATCGGCGATGCCATCCCTGGGCCCATGCTTGCCCACAAAGCTGAGGAGGATG
GTGTGGCATGTGTCGAGTTCCTTGCTGGCAAGGAAGGTCACGTTGACTATGATTTGGTGCCTGGTGTGGTCTACACACAT
CCGGAGGTGGCATCTGTCGGGAAGACGGAGGAGCAGGTGAAGGCCTCAGGAATTGCCTACCGAGTCGGCAAATTCCCGCT
CATGGCAAACAGCCGTGCGAAGGCTATTGATGATGCCGAGGGGATGGTTAAGGTCGTGGCTGACAAGGAAACTGACAAGA
TTCTTGGTGTGCACATAATGGCGCAGAATGCTGGAGAGATCATCCATGAAGCTGTGCTTGCCCTGCAGTATGGAGCATCC
AGCGAGGATGTTGCCCGAATATGCCATGCACATCCCACTGTGAGTGAGGCCCTCAAGGAGGCTTGCTTGCAAACCCATTC
TAAGGCCATCCACATATGATTTCTCCTTTTTCTGTTATCACTTGTCTCAGGAAGTTCCAAAATTTTGTAATAATTTTGGA
TGTATGGGAACAAAAAGCATACGATTGTCATTTC--GCCCTGTCGGCGATACTGTGAATTAACAGTTGCCAGTGCCACGG
GTTCATTGTACATGCCATTGAATTTATGTTTCCTTCTTAGGCCCTACTACATCTGGAGTGAGGCGCTTTGGATATTTGAA
GATGACCTTTTTTTTT--------------------TG------CTATTTACAAGTTTTAGGAAAATTTCAATATTTTTT
TGCAAGGATACATATAGATGTTTTTTTCATGCCTGTATGCAAAAAAGAAAAAATCGTG--GCCCAGAAAGAACAAAAGGA
GGTCCCATTTTTATACACATATTTGTCTTTTTTTGCTTACTTCACTTATGAAAATGTATGTTGCTGCACCCGCAAAAAAA
ATTTGCTGGAAATTCATAGACATATACTATACAATTATATGTACTAGCTCATTGCCTGGACGTTGCAACTGAGGTAAACA
TATTTCAGTGATTCAATAT--CAATTACAAGTGCCTCAACAGAGACATTGTGAGTTTTTTT-TATGGTCCTTCCCACATC
GAAGTCATCGGCT-AAGATCGTGTTGTAGAATGTGAAGATGATGAAGAGGGAATGAG-----------------------
-----------------------------------------------------AGATTTTAGGAGGAGCCCACATAAATA
ATATTTTCCCTAA-TTAAGGTGATCCTCGCTTGACAGCGCCTGGGCCATTAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>SNPs
--S--------------------------------------------------------S------S------S------
---------------S----------------------------------------------------------------
-------------------------------------------S-----------S------------------------
-----------------------------------------------S--------------------------------
----------------------S------------S-----------S--S--------S-SSSSSS-------------
--------------SS----------------------------------------------------------------
---SS----------------------SSSSSSSSS-SSSSS----------------S----------------S----
------S---S-------------------------S---------S--S-S----------------------------
--S----------------S------SSS---------S-S----------------------------------S--S-
---S-----S---S------------S-----------------------------------------------------
------------------------------------------------------S-------------------------
S------------------------------------S------------------------------------------
---------------S------------------------------SSSSSSSS--------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------S------------
----------SSSSSS--------SS------------------------------------------------------
----------S----S---------------S-------------SS-SS-SS---------------------------
----------------------S-----S---S-----------SSSSSSS-------S---------S-----------
-------------S---------------------------S---------S-S---------------S----------
----------S--S---S------------------------------------S-------------------------
--------------------------------------------------------------------------------
----------------------S----------S---------S--SSS-S-SSS-----S------------------S
SSSSSS-------------S-----------------S-------------------------SSSSSSSSSSSS-----
------------------------S-----------SS-------SS---S-----------------------------
-----------------------------------------------S---------S---S-----------S------
--------------------------------------------------------------------------S-----
--------------------S-S-----------------S--S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-------------S-------S------------------------S----S
----------------S---------------------------------------------------------------
----------------------------------------------------S------------------S--------
----S-------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S------S--S-----
--------------------S-S---------S----------S-------------S-S-----S--------------
----------------S-----------S---------------------------------------------------
---------------SSSSSSSSS--------------------------------------------------------
--------------------------------------------------S---------S-----------------S-
--------------------------------------------------------------------------------
S----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-------S--------S-----------------S---------------------------------------------
--------------S--------------------------------------S--S-----------------------
---------S--------------------------------------------------------------S-------
-S-----S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-------------S----------------------------------------------------------
--------------------S----S-----------------------------------S-----------S------
-----------------S--------------------------------------------------S-----------
------------------------------S-------------------------------------------------
-S------------------------------------------------------------------------------
--S--------------------------------------------------------------S--------------
S-----------------------------------------------------S-------------------------
-------S------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
S-------------------------------------S-----------------------------------------
----------------------------------SS--------------------------------------------
--------------------------------------------------------------------------------
-----------S-----S---S------S--S-------------------S---------------SSS-------S--
----------S------------------------------------------SSSSSSS--------------------
-------------------S------------------------------------------------------------
-----------------------------S-------------------------S-------------S----------
--------------------------S--------------S------S------------S-----------S-----S
--S----------S-------S-----------------------------------S--------S-----------S-
---S------------S---------------------------------------------------------------
-------S-----S-----SS------S----------------------------------------------------
------------------S-----------S---------S-----SSS----------S----SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_1014
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----------------------------------GGAAACAGAGGAAGGCAGGG--------------------------
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>reverse_2762
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-----------------------------------------CCCCCAAAGAGTTGACCAGA-------------------
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>forward_1958
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------------------GTACTCGCTCCATTCCACGT------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4266
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-------------------------TGGTGAGCAGAGCATCCTTG-----------------------------------
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>forward_3266
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----------------------------------------------ACACGGAACAGTAGGTCCAC--------------
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>reverse_4728
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-------CGTGCACATAATGGCGCAG------------------------------------------------------
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>forward_4641
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-------------------------------------------------------------GAGTTGGCAAATTCCCGCT
G-------------------------------------------------------------------------------
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------------
>reverse_5828
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-------------------------------------------------------------------ACTTCCCTTAGCC
ATGCTCG-------------------------------------------------------------------------
------------
