>input_sequence_23856
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-------------------------------------------AACAGACACCGACATCCCGGTCCCGCCCGTACCCCAC
CGCGCCGGGTCTGCACGTCATTGACCGACGCCGCTTACGTGCACACCACCGGCGCCCTCCCGTGACAAGGCCGACGCGCG
GGGCCCAGCGCCCACCGGCCCACACGTCGGTTAGCGGGGGGCT----GGGCTAGGAGGACGCGACACGCCCCCCGCCCGT
CTTCCCCACCGGACTGGAACTGGATAGT---TCGCCTGCGAAGCAGAGCGGAGAGAAAAATATTTTAAAGATCGAGCGAT
CACGCAGAGC------GACAGGGAGGAGAAGAAACCAGAGCGCGGCGATTTTATTAATAGAG---AAATAAAGGCTGCCG
GCGGGGCGTGGGCGCGGGGTGAAAAGCGCGAGGCGATAGAGAGA-----------GATCACGAGGTGGGTTTTCTCCTCC
GCCCAATCCAGT-----CCACCACCCCGGAGC-------TGGAGCTCATCATCATCAGCTAACTAAACTAAAGGGGAGAA
GGCAAGGTGTGTGTGTCTCTCTCTCTTGGATCGCGGGGTCACGGGAGGAGCGA------------GCTCGGTTGCTTTGC
TCC-CGGCGCCGGCGGTGGGTGGAAGGGAAGGGGAGAGGGGAGGGAG--GGGATGGACCGGGCGGCGCTGACGGTGGGGC
CGGGCATGGACATGCCCATAATGCACGACGGCGACCGCTACGAGCTCGTCAAGGACATCGGCTCCGGCAACTTCGGCGTC
GCGCGCCTCATGCGCAACCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGAGGGGAGAAGGTACTCCTACT
ACTTC---TACTACCAGAGCATCGCTAGTTCTTCGTCTCCCTGCGCGGGACGGAATCAGAGCTGAAGAGCTTGCGTTCGT
GTAAGCAGATTGACGAGAACGTGCAGCGGGAGATCATCAACCACCGGTCGCTGCGCCACCCCAACATCATCCGCTTCAAG
GAGGTCATCCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCTCCGGCGGGGAGCTCTTCGAGCGCATCTGCAA
CGCCGGCAGGTTCAGCGAGGACGAGGTCCGCCCATCAC----CCTCCCCCTTCCTTCC----------------------
--TTCGCCATGACGTTCTCCGTTTCTCA-TACGTGGACTACTAGTGATCGATC---ACTGTACTAACCGCCCAAGCCTCT
GACTTTTCAGGCGCGTTTCTTCTTCCAGCAGCTGCTCTCAGGAGTCAGCTACTGCCACTCCATGGTACTCTTTCCTTTTC
GGGCGATTCCACAGTTTGTTAGGCTGTTACGGTAGCTACGACTGAAATGGTTTC-GTCTTTTGTTAAGCAAGTATGCCAT
CGTGACTTGAAGCTGGAGAACACGCTGCTGGACGGGAGCACGGCTCCTCGCCTCAAGATATGCGACTTTGGCTATTCCAA
GGTACTCCCTCCGTCCGGAAATACTTGTCGAAGAAATGCATAAAAATGGATGTATTTAGAACTAAAATACGTCTAGATAC
ATCCATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTACATAACTTACTAAAACAAGATACT---TGCTTCACTGTCGC
GCAGGCTTTCAGTTTTCAGCAATCAACATAGTATTTACTCTGTTTACATGCCAGAATGGGGGTTATGCTCTGCTTGCCAT
CCTAGTAGTTTTTTGTGTCCTAGTGTATCGACCTGTTATTCTACTCATTCCTCATTCCTGTTTCGTGTATTTGCAGTCGT
CGGTTCTTCATTCGCAACCAAAATCTACGGTTGGAACACCGGCGTACATTGCTCCGGAGGTTCTTCTCAAGAAGGAATAT
GATGGAAAGGTATGCATACCAGGGTTTAAAATTTCAACGAAATTTCATTGAAAATTTCGCATATTTCGGCGGGGTATGAA
ATACTTATAGCCCTGAAATTTCGAGTCCAGTTCAAATTAAAAAATCAAATTAGGT---------TAAAATTCATTAAATT
TGAAAATTC---------------------AAAATGCCAAATAATTTCTGAAATACGCGGAATTTCCAAAATTCCGCATA
TCTCGGTGACGTCCGAATTT-TTTT----GTTTCTGAAACTAAAGGCCTTGAAGCATACATATTGCTGCT-------CCA
TGTAAATATTACTTTTCATGATATCCTGATCCTGTTGTTTTGTGTAATGTTCATGCCCATTTTTCTCCA--------ACC
ATATTTGCATTGTGAAG-ATTTCCATTCGTGAGATGCATGATGTATAA--------TCCCATGGTACTACTAGACTCTGC
GATGT-----GTCATCTCAAGCTACCTGCCGCTAATCCTTTGTTCTTCGATGAAATGAAGATTGCGGATGTGTGGTCCTG
TGGAGTGACGCTCTATGTTATGCTAGTTGGTGCATATCCCTTTGAGGATCCTGATGAGCCCAAGAATTTTAGGAAGACAA
TTCAGGTTCCCATTCTTATAGCT-ATCTTAATCTCTTGACCATCTCTGTTCTGATCACAAACTAATGA-------GCTTG
CTTTGCCAGAGGATATTGAGTGTGCAGTACTCGATTCCAGATTACGTGCACATATCTTCCGAGTGTCGAGATCTTATCGC
CAAGATTTTCGTTGGCAACCCAGCTACCGTGAGTAGTACTTATATCTACTAACCATGTAGTGTTGTCACTAGATTGTTGC
GTGCAGTTTATTTTAAGGTTGATAACTTT----------TGCAGAGAATCACAATCCCTGAGATAAGAAACCATCCGTGG
TTCTTGAAGAACCTCCCAGCTGACCTGGTGGACGACAGCACCATGAGCAGCCAGTATGAGGAGCCTGAACAGCCGATGCA
GAGCATGGACGAGATCATGCAGATCCTGGCGGAGGCCACCATCCCGGCGGCCGGTTCTCGGATCAACCAGTTCCTGAACG
ACGGTCTCGACCTTGACGACGACATGGACGACCTTGATTCAGACGCCGACCTCGACGTCGAAAGCAGCGGGGAGATAGTG
TATGCTATGTGACGGTGCAAAACCTCTCGACGAAGCAGTTCTTCTATAAGTTGACCGTAAGATGCCAAGCTACTCGAGAC
TC-------TCAGAAGGGATAGGGTACCGCGGTGCTTGATAGCCCGCCCACAAATGTTACTTTGTTGTACTAGTTGGTCT
CTGTACTTCCAATGTTGTAGTACAACGGTTTGGCCTTTTGGATGTGACCTTGTGTTGCTCCAAT----------------
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----------------------------------------------------------------------------
>chr4A_1_TraesCS4A01G235600
GTCTGAACCACACTTTCCAATTGGCTTCTTCGAAAAGAGAAAACAAGGCAAGCAATAGGCAAGATTTGTGAGAGGTGAAT
ATTCCAACAAGAAATCATTTGTGAACCAATCACTTTGAAATCGACGACGGCCAGCCCCTGTCCCATTAAATTCACACTCA
TCATCAATACATGAGCTGGTCTTAAAGGCATTAGCAGGGATCAATACTAGGATGTTGTGAGGGTGTTCGCAATGTAGAAC
ACATGAGTTATCTTGGAATTGTCGATCTCTCGGAACAAGATGCGATGGAGTTTAAGATTTGTAATC-AGAAACTCACACG
CAACTTCCAAATGACCCAATGGAACATTGCTAGTGTTTCATTAAAATCAATAGAGCACGAGTCTGAATAAATTGAAGTTT
AGTTTAAGCTATGTAATTTGAAAGTTT--TTTATGTATGAGTTGTAACATTTGTATTTGAATTATAATCGTATTGCAAAA
TTGATATTT-------------------------------------------GAATCATTTCAATGTCTGAAGAAAAAAA
ACGACTTACAAAAAGAAAAGAAAAAGGAGGCTGATAAGCAGGGGATTTTTTAAAGCCTTGCGTTAGGTCT----------
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-----------------------CTGCGCATCGATCTAAATTTTACGAACACGTCCGAACATAAACATTTTATAAGCGGA
CAAATAATGTTGCCCGTTTGGGTTTTGGATTGGAGA-TGCCCTAGTCAAGACGGCAAACCAAACCGACCCAACCTAATGC
AGTCATTAGCTACAGCGAGTCAGCCGATCAACTCGAGCCGCTGGTGCCGAAATGAGAACACACCCACAGCGCTAAATCAA
TCGGAGCCGTCCACGCGCACAACACGTCACCCGATCACCATCCGATACGCATAGAGCGGCGGTCCGCTCAACTAACCGAC
CTGAAGA--AGTTCAGGCTGTCGCCCGTGCTCCACGCGGT----------------------------------------
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------------------------------ACGCCTTCCAGCCACCCCTCCAGATATTTTCAGCCTCCCCC---------
--ACCACCCTACGCCTACGCCCACGCCCACGCCACCGTCCTACAACAGACACCGACATCCCGGTCCCGCCCGTACCCCAC
CGCGCCGGGTCTGCACGTCATTGACCGACGCCGCTTACGTGCACACCACCGGCGCCCTCCCGTGACAAGGCCGACGCGCG
GGGCCCAGCGCCCACCGGCCCACACGTCGGTTAGCGGGGGGCT----GGGCTAGGAGGACGCGACACGCCCCCCGCCCGT
CTTCCCCACCGGACTGGAACTGGATAGT---TCGCCTGCGAAGCAGAGCGGAGAGAAAAATATTTTAAAGATCGAGCGAT
CACGCAGAGC------GACAGGGAGGAGAAGAAACCAGAGCGCGGCGATTTTATTAATAGAG---AAATAAAGGCTGCCG
GCGGGGCGTGGGCGCGGGGTGAAAAGCGCGAGGCGATAGAGAGA-----------GATCACGAGGTGGGTTTTCTCCTCC
GCCCAATCCAGT-----CCACCACCCCGGAGC-------TGGAGCTCATCATCATCAGCTAACTAAACTAAAGGGGAGAA
GGCAAGGTGTGTGTGTCTCTCTCTCTTGGATCGCGGGGTCACGGGAGGAGCGA------------GCTCGGTTGCTTTGC
TCC-CGGCGCCGGCGGTGGGTGGAAGGGAAGGGGAGAGGGGAGGGAG--GGGATGGACCGGGCGGCGCTGACGGTGGGGC
CGGGCATGGACATGCCCATAATGCACGACGGCGACCGCTACGAGCTCGTCAAGGACATCGGCTCCGGCAACTTCGGCGTC
GCGCGCCTCATGCGCAACCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGAGGGGAGAAGGTACTCCTACT
ACTTC---TACTACCAGAGCATCGCTAGTTCTTCGTCTCCCTGCGCGGGACGGAATCAGAGCTGAAGAGCTTGCGTTCGT
GTAAGCAGATTGACGAGAACGTGCAGCGGGAGATCATCAACCACCGGTCGCTGCGCCACCCCAACATCATCCGCTTCAAG
GAGGTCATCCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCTCCGGCGGGGAGCTCTTCGAGCGCATCTGCAA
CGCCGGCAGGTTCAGCGAGGACGAGGTCCGCCCATCAC----CCTCCCCCTTCCTTCC----------------------
--TTCGCCATGACGTTCTCCGTTTCTCA-TACGTGGACTACTAGTGATCGATC---ACTGTACTAACCGCCCAAGCCTCT
GACTTTTCAGGCGCGTTTCTTCTTCCAGCAGCTGCTCTCAGGAGTCAGCTACTGCCACTCCATGGTACTCTTTCCTTTTC
GGGCGATTCCACAGTTTGTTAGGCTGTTACGGTAGCTACGACTGAAATGGTTTC-GTCTTTTGTTAAGCAAGTATGCCAT
CGTGACTTGAAGCTGGAGAACACGCTGCTGGACGGGAGCACGGCTCCTCGCCTCAAGATATGCGACTTTGGCTATTCCAA
GGTACTCCCTCCGTCCGGAAATACTTGTCGAAGAAATGCATAAAAATGGATGTATTTAGAACTAAAATACGTCTAGATAC
ATCCATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTACATAACTTACTAAAACAAGATACT---TGCTTCACTGTCGC
GCAGGCTTTCAGTTTTCAGCAATCAACATAGTATTTACTCTGTTTACATGCCAGAATGGGGGTTATGCTCTGCTTGCCAT
CCTAGTAGTTTTTTGTGTCCTAGTGTATCGACCTGTTATTCTACTCATTCCTCATTCCTGTTTCGTGTATTTGCAGTCGT
CGGTTCTTCATTCGCAACCAAAATCTACGGTTGGAACACCGGCGTACATTGCTCCGGAGGTTCTTCTCAAGAAGGAATAT
GATGGAAAGGTATGCATACCAGGGTTTAAAATTTCAACGAAATTTCATTGAAAATTTCGCATATTTCGGCGGGGTATGAA
ATACTTATAGCCCTGAAATTTCGAGTCCAGTTCAAATTAAAAAATCAAATTAGGT---------TAAAATTCATTAAATT
TGAAAATTC---------------------AAAATGCCAAATAATTTCTGAAATACGCGGAATTTCCAAAATTCCGCATA
TCTCGGTGACGTCCGAATTT-TTTT----GTTTCTGAAACTAAAGGCCTTGAAGCATACATATTGCTGCT-------CCA
TGTAAATATTACTTTTCATGATATCCTGATCCTGTTGTTTTGTGTAATGTTCATGCCCATTTTTCTCCA--------ACC
ATATTTGCATTGTGAAG-ATTTCCATTCGTGAGATGCATGATGTATAA--------TCCCATGGTACTACTAGACTCTGC
GATGT-----GTCATCTCAAGCTACCTGCCGCTAATCCTTTGTTCTTCGATGAAATGAAGATTGCGGATGTGTGGTCCTG
TGGAGTGACGCTCTATGTTATGCTAGTTGGTGCATATCCCTTTGAGGATCCTGATGAGCCCAAGAATTTTAGGAAGACAA
TTCAGGTTCCCATTCTTATAGCT-ATCTTAATCTCTTGACCATCTCTGTTCTGATCACAAACTAATGA-------GCTTG
CTTTGCCAGAGGATATTGAGTGTGCAGTACTCGATTCCAGATTACGTGCACATATCTTCCGAGTGTCGAGATCTTATCGC
CAAGATTTTCGTTGGCAACCCAGCTACCGTGAGTAGTACTTATATCTACTAACCATGTAGTGTTGTCACTAGATTGTTGC
GTGCAGTTTATTTTAAGGTTGATAACTTT----------TGCAGAGAATCACAATCCCTGAGATAAGAAACCATCCGTGG
TTCTTGAAGAACCTCCCAGCTGACCTGGTGGACGACAGCACCATGAGCAGCCAGTATGAGGAGCCTGAACAGCCGATGCA
GAGCATGGACGAGATCATGCAGATCCTGGCGGAGGCCACCATCCCGGCGGCCGGTTCTCGGATCAACCAGTTCCTGAACG
ACGGTCTCGACCTTGACGACGACATGGACGACCTTGATTCAGACGCCGACCTCGACGTCGAAAGCAGCGGGGAGATAGTG
TATGCTATGTGACGGTGCAAAACCTCTCGACGAAGCAGTTCTTCTATAAGTTGACCGTAAGATGCCAAGCTACTCGAGAC
TC-------TCAGAAGGGATAGGGTACCGCGGTGCTTGATAGCCCGCCCACAAATGTTACTTTGTTGTACTAGTTGGTCT
CTGTACTTCCAATGTTGTAGTACAACGGTTTGGCCTTTTGGATGTGACCTTGTGTTGCTCCAATGCTGTGTTGACTATCT
CTGCTGATTTGAGAACTGGTAGATCATCTGTAACCC---GTGTCATCACATCATCTTTGTACCATGTATATGTGTTGTAG
GCAAATAAGAGACACTACAGCTTGATCAGTTTCGT--------------------------------------------T
TCGACCTTTCAGTTCAGATGAGTTTGTGTGTTTCTGCATTGTGGTTCTTGCTACGATTCAGTGTATCCATTTACGTGCAG
GGCTCCAGGTGTTGAGATATGCACTCGGTTCAGATAAGAGACTCTCATATTATTGAGCAA-TTTGAGTTGTGCATATTAA
TATCAGATTTCAGCATATCGTGGGCTCATCTTACCTATTGAGAAGTTCAGGAGTCAATAAATTATGAACCATTGTGGAAT
CTTTCTGTCTGTGAAATTCAGGAGTCAATACTCGAGACACTCAGAAGGGACAGGGTTTAAAATTTCAGCATATCGTGGAC
TGACAACGATAGGGCCACGGAGGACAACGTCGCTCTCGGCGCCTGATCAACCAAACCCACTCGTCT--------------
-----------------AACAATCCAGATTAACAAAATAATCCAGATCATTCTCGCAAATTATGCAAAGACCATGGCTCA
-----TACTTCGCTAAGAAGCATTTGGCCAGCATGGGCATCTCATGCATCGAGCAACTGAAAGCACAAAACTCCACAGCA
ATCCTGGATTATTGTCACTAACTCACCACAACCTCCATCTCATGC-----------------------------------
------------ATCAAGCAACTGAAAGCACAAAA-CTCCACAGCAATCCTGGATTATTGTCACTAACTCACCACAACCT
CCATACATCAAGCAAGCCATTATTCGAAAACAAAAAACATCCACCGGATTTATTGCACAGGCAGCATGATCTAAAGTTGA
AACCCCCTCCACTCACATGTGATAGTTGAGGTCACTGCCAATGCAGCGATCCAGAGCAAACACATCATGGAGACACCAAG
GGATTGAACACATGACCGACGAATAGCACCACGCCTGTGAGGTCTTCTCGGATAAGGAAGAGGAAAGGGTGATCCG
>chr4B_1
GTCTGAACCAGACTTCCCAATTGGCTTCTTCGAAAAGAGAAAACAAGGCAAGCAATATGCAAGATTTGTTAGAGGTGAAT
ATTCCAACAAGAAATGGTTTGTGAACCAATCACTTTGAAATCGACGACGGCCAGCCCCTGTCCCATTAAATTCATACTCA
TCATCAATACATGACCTAGTCTTAGAGGCATTATCAGGGATCATGACTAGGATGTCGTGAGGGTGTTTGCAATGTAGAAC
ACATGAGTGATCTTGGAATTGTTGATCTTTCAGAACAAGACGTGACTGAGTTTGAGATTCGTAATCGAGAAACACATACT
CATCTTCCAAATGATCT-ATGGAACATTGCTGGTGTTTCATTAAAATCAATAGAGCATGAGTCCGAATAAATTGGAGTTT
AATTTGAGCTATGTAATTTGAAATC----TTTATGTATGAGCTGTAAGATTTGTATTTGTATTATAAGCGTATTGTAATA
TTGATTTTCGAATCATTTCAGCTTTTTGAAAGATCACTTTTTTTAAAAGATCGAATCATTTCAGTGTCCGGAGGAAAAAA
TCGAGG----------AAAAGAAAGGGAGGCTGACAAATAGGGA---TTTTAAAGGCTTGCGTTAGGTCT----------
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-----------------------GTGTGCATCGATTTAAATTTTACGAACACTTCCGAACAG------TTTC---GCGGA
CAAATAATGTCGTCCGTTTGGGTTTTGGATCGGAGATTGCCCTAATCAAGACGGCACACCAAACCGACCCAACCTAATTC
AGTCATTAGCTCCAGCGAGTCAGCCGATCAACTCG-GCGGCTGTTGCCGAAATGAGAGCACGCCCACATTGCTGAAACAA
TCGGAGCCGTCCACGTGCACCACGGGCCACCAAATCACCATCCGATACGCATAGAGCGGCGG---GCTCAACTTACCGAC
CTGAAGTTTT---CAGGCCGAAGCCCGTGCTCCACGCGGT----------------------------------------
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------------------------------ACGCCTACCAGCCACCCCCCCAGATATTTTCAGCCTCCCCC---------
--ACCACCCTACGCCTGGGCC------------ACAGTCCTACAACAGACACCGACAGCCGGGCCCCACCCGTACCTCAC
CGCACCGGGTCTGCACGTCATTGACCAACGCCGCTTACGTGCACACCACCGGCGCCCTCCCGTGACAAGCCCGACGCGTG
GGGCCCAGAGCCCACCGGCCCACACGTCGGTTAGCGGGGGGCTGGCCGGGCTAGGAGGACACGACACG-CCCCCGCCCGT
CTTCCCCACCGGACTGGAACTGGATAGTAGTTCGCCTGCGAAACAGAGCGGAGAGGGAAAAATATTAAAGATGGAGCGAT
CACACCCGCACAGG----CAGGGAGGAGAAGAAACCAGAGCGCGGCGATTTTATTAATAGCGAGAAAATAAAGGCTGCCG
GCGAGGCGTGGGCGCGGGGTGAAAAGCGCGAGGCGATAGAGAGAAAGGAGGGCGAGATCACGAGGTGGGTTTTCTCCTCC
GCCCAATCCAGTGCAGTCCACCACCCTCTCGAGGTACGGTGGAGC---TCATCATCAGCTAACTAAACTAAAGGCAAGAA
GGCAAGGCTTCTT--TCTCTCGCTCTTGGATCGCGGGGTCACGGGAGGCGCGCGCGCGGGAGCTTGCTCGGTTGCTTTGC
TCCGCGGCGCCGGCGGTGGG-GGAAGGAAAGGGGAGAGGGGAGGGAAGAGGGATGGACCGGGCGGCGCTGACGGTGGGGC
CGGGCATGGACATGCCCATAATGCACGACGGCGACCGCTACGAGCTCGTCAAGGACATCGGCTCCGGCAACTTCGGCGTC
GCGCGCCTCATGCGCAACCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGAGGGGAGAAGGTACTTCTACT
GCTAC---TACTAG-------------GTTCTTCATCTTCCTGCATGGGACGAAATCAGAGCTGAAGAGCACGCATGTTG
ATTTGCAGATTGACGAGAACGTGCAGCGGGAGATCATCAACCACCGGTCGCTGCGCCACCCCAACATCATCCGCTTCAAG
GAGGTCATCCTCACGCCCACGCACCTCGCCATCGTCATGGAGTACGCCTCCGGCGGGGAGCTCTTCGAGCGCATCTGCAA
CGCCGGCAGGTTCAGCGAGGACGAGGTCCGCCCATCCATCATCCTCTCCCTTCCTTTCCATGCCTCATCGGTCGATCACC
GATTCGCCATGACGTTCTCCGTTTCTGCGTACGTGGACTGCTACTGATCATTATAGACTATACTAACCGCCCAAGCCTCT
GACTTTTCAGGCGCGTTTCTTCTTCCAGCAGCTGCTCTCAGGAGTCAGCTACTGCCACTCCATGGTAACCTTTCCTTTTT
GGGAGATTCTACAGTTAGTTAGGCTGTTACGGTAGCTACGACTAAAATGGTTTC-GTCTTTTGTTAAGCAAGTATGCCAT
CGTGACTTGAAGCTGGAGAACACTCTGCTGGACGGGAGCACGGCTCCTCGCCTCAAGATATGCGACTTTGGCTATTCCAA
GGTACAGT------------------------------------------------------------------------
-------------------------------------------ACTTACTAAAACAAGATGCT---TGCTTCACTGTCGC
--AGGATTGCAGTCTACAGCTAACAGCATATTTT--ACTCTGCTTACATGCCAAATTGGGAGTTATGCTCTGCTTGACAT
CCTAG----TTTTTGTGTCCTAGTGGATCTACCTGTTACTCTGCTCATTGTTGTTCTGC-------GTATCTGCAGTCGT
CGGTTCTTCATTCGCAGCCGAAATCAACCGTCGGAACACCGGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATAT
GATGGAAAGGTATGTATACCAGGGTTTAAAATTTCAACGAAATTTCATTGAAAATTTCGCATATTTCGGTGGGGTCCGAA
ATACTTATAGCCCTGAAATTTTGAGCCCAATTAAAATTA-AAATTTAGGTGAGGTAAAATTCATTAAAATCTATTTAATT
TGATAACTC---------------------AAAATGTGAAATAATTTCTAAAATCTGCGAAATTTTCAAAATTTCGCATA
TCTCAGTGACGTCCGAATTTTTTTT----GTTTCTGAAATTAAAAGCCTTGGTGCATACATATTGGTGCTCCATGGACCA
TGTTAATATTACTTTTCATGATATCCTGATCCTGTTGTTTTGTGTAATATTCATGCCCATTTTTCTCCACTTGGGCAACC
ATATTTACATTGTGAAGCATTTCCATTTGCGAGATGCATGATATATAT--------TCCAACGGTACTGCTAGACTCTGC
GATGGCATGCATCATCTCAAGTTACCTACCACTAATCGTTTGTTCCTCGATGAAATGAAGATTGCGGATGTGTGGTCCTG
CGGAGTGACACTTTATGTTATGCTGGTTGGTGCATATCCCTTTGAGGATCCTGATGAGCCCAAGAATTTTAGGAAGACAA
TTCAGGTTCCCATTCTG--AGCC-ATCTTAATTTCTTGACAATCTCTGCTCTTGTTCTGAACACAAAGCTAATGCGCTTG
TTTTGCCAGAGGATACTGAGTGTGCAGTACTCGATTCCCGATTACGTGCACATATCTGCCGAGTGTCGAGATCTTATCGC
CAAGATTTTCGTGGGCAACCCAGCTACAGTGAGTACTTATTACCAAGATTTTCGAGTCACTATATGTTGCATACATATTC
C---------TTTTGAGGTTGATACCTTTCATGTCGACATGCAGAGAATCACAATCCCCGAGATAAGAAACCATCCGTGG
TTCTTGAAGAATCTCCCAGCTGACCTGGTGGATGATAGCACCATGAGCAGCCAGTATGAGGAGCCGGAACAGCCGATGCA
GAGCATGGACGAGATCATGCAGATCCTGGCGGAGGCCACCATCCCGGCGGCTGGTTCTCGGATCAACCAGTTCCTGAACG
ACGGCCTCGACCTTGATGACGACATGGACGACCTTGATTCAGACGCCGACCTCGACGTCGAAAGCAGCGGGGAGATAGTG
TATGCTATGTGACGGTGCAAAACCTCTCAACGAAGCAGCTATTCTATAAGTTGACCGTAAGATGCCAAGATACTCGAGAC
ACTCAGAAGTCAGGAGGGATAGGGTACCGCGGTGCTTGATAGCCCGCCCACAAATGTTACTTTGTTG---TAGTTGGTCT
CTGTACTTCCGATGTT---GTACAACGGTTTGGCCTTTTGGATGTGACCTTGTGTTGCTCCAATGCTGTGTTGACTATCT
CCGCTGATTTGAGAACTGGTAGATCATCTGTAACCCCGTGTGTCATCACATCATGTTTGTACCATGTATATGTGTTGTAG
GCAAATAAGAGAGACTACAGTTTGATCAGTTTCGTTTGCTGCCTGCCATTTCCAGCATCTTGTGGGGGCATGAGTGCGTT
TCGACCTTTCAGTTCAGATGAGTTTCTGTGTTTCTGCATCGTGGTTCTTGCTATGATTCAGTGTATCCATTTACGTGCAG
GGTACCAGGTGTTGAGATATGCACTC---------------------TATTATTCAGCAATTTTGAGTTGTGCATGTTAA
TATCAGAATTCAGCATATCGTGGGCTCATCTTACCTGTTGAGAAGTTCTGGAGTGAATAAATTCTGAACCATTGTGGAAT
CTTTCTCTCTGCATCTCTTTCTCTCCCCCCAGTCAAGGCACACAT--------------------------------GAC
TGATAACGATAGGGCCACGGAGGACAACGTCGCTCTCGGCGCCTCGTCAACCAAACCCAAGTCCTCAAAAAACACAAAGT
CAACCAAACCCAAGTAAAACAATCCAGATTAACAAAATAATCCAGATCAATCTCGCAAATTATGCAAAGACCCTGGTTGA
TACAGTACTTCGCTAAGAAGCATTTGACCAGCATGGTCATCTGATGTACTCCCTTCGCCCCAAAATTCTTGTCTTAGATT
TGTCTACATATGGATGTATCTAGTCACATCTTACTGTTAGATACATTCGTATCTAGATAAATTGAAGACAAGAATTTTGG
GACGGAGGGAGTATCAAGCAACTGAAACCACAAAAACTGCACATCAATCCTGGATTATTGTCATTAAATCACCACAACCT
CCATACATCAAGCAAGCCATTATTTGAAAACAAAAA-CATCCACCGGATTTATTGCACAGGCAGCATGATCTAAAGTTGA
AA-CCCCTCCACTCACATGTGACAGTTGAGGTCACTGCCAAGGCAGCGATCCAGAGCAAACACATCATGGAGACACCAAG
GGATTGAACACATGACCGACGAATAGCACCACGCCTGTGATGTCTTCTCGGATAAGGAAGAGGAAAGGGTGATCCG
>chr4D_1
GTCTGAACCACACTTCCCAATTGGCTTCTTCGAAAAGAGAAAACAAGGCAAGAT----------TTTTTTAGAGGTGAAT
ATTCCAACAAGAAATCGT---TGAACCAATCACTTTAAAATCGACGACGGCCAGCCCCGGTCCCATTAAATACATACTCA
TCATCAATACATGAGATAGTCTTAGAGGCATTAACAGGGATCATGGCTAGGATGTTGCGAGGGTGGTCGCAATGTAGAAC
ACATGAGTGATCTTGGAATTGTCGATCTCTCAGAACAAGACGCGGCTGAGTTTGAGATTCATAATC-AGAAACTCATACG
CAACTTCCAAATGATCCAATGGAACATTGCTGGTGTTTCAT-AAAATCAATAGAGCATGAGTCTGAATAAATTGGAGTTT
AATTTGAGCTATGTAATTCGAAAGCTTTTTTTATGTATGAGTTGTAACATTTGTATTTGAATTATAATCACATTGTAATA
TTGATATTT-------------------------------------------GAATCATTTCAATGTCCGGAGAAAAAAA
TCGACTTACAAAAGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGGTCACTGCGCACCGATCTAAGTTTTACGAACACGTCCGAACACTAACATTTTC---GCGGA
CAAATAATGTTGCCCGTTTGGGTTTTGGATTGGAGA-TGCCCTAATCAAGACGGCAAACCAAACCGACCCAGC-------
---CATTAGGTACAGCGAGTCAG-CGATCAACTCG-GCGGCTGTTGCCGAAATGAGAACACGCCCACATTGCTGAAACAA
CCGGAGCCGTCCACGTGCACTACACGTCACCCGATCACCATCCGATACGCATAGAGCGGCGG---GCTCAAC-TACCGAC
CTGAAGTTCAGTCCAGGCTGCAGCCCGTGCACCACGCGGTAGTCAAATTTGACAAATTTGACCTATAAACGAAATCAAAT
CACAGAATGAACTATTCGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCCGACACGAAGGCGCCACACTACA
CTGTGCAACGTCTCACAGATAGACGCTACACGGCCAGCGTCGCACCCGTGTGATCAGAAAATTACTAAGTCAGTGTACAG
CGCCTGAGAGCTAGGCGCCACGGGTCAGCCGCGTGAAATAGTTTACGGACAGTTCATTCTGTGATTTGATTTCGTCTATA
GGTCAAATTTGTCAAATTTGCCTATGCGGTACGCCTCCCAGCCACCCCTCCAGATATTTTCAGCCTCCCCTCCCCCACCC
CTACCACCCTACGCCTACGCC------------ACCGTCCTACAACAGACACCGACATCCCGGCCCCACCCGTACCTCAC
CGCACCGGGTCTGCACGTCATTGACCGACGCCGCATACGTGCACACCACCGGTGCCCTCCCGTGACAAGCCCGACGCGCG
GGGCCCAGCGCCCACCGGCCCACATGTCGGTTAGCGGGGGGCTGGCCGGGCTAGGAGGACACGACACG-CCCCCGCCCGT
CTTCCCCACCGGACTGGGACTGGATA---GTTCGCCTGCGGAACAGAGCGGAGAGGGAAAAATATTAAAGATCGAGCGAT
CACGCACGCACAGAGAGACAGCGAGGAGAAGAAACCAGAGCGCGGCGATTTTATTAA----G---AAATAAAGGCTGCCG
GCGAGGCGTGGGCGCGGGGTGAAAAGCGCGAGGCGATAGAGA-----------GAGATCACGAGGTGGGTTTTCTCCTCC
GCCCAATCCATC-----CCACAACCCTCTCGAGGTACGGTGGAGCTCATCATCAGCAGCTAACTAAACTAAAGGGAAGAA
GGCAAGGCTTCTT--TCTCTC----TTGGATCGCGGGGTCACGGGAGGCGCGCGCGCGGGAGCTTGCTCGGTTGCTTTGC
TCCGCGGCGCCGGCGGTGGG-GGAAGGGAAGGGCAGGGAAG-GGGAG--GGGATGGACCGGGCGGCGCTGACGGTGGGGC
CGGGCATGGACATGCCCATAATGCACGACGGCGACCGCTACGAGCTCGTCAAGGACATCGGCTCCGGCAACTTCGGCGTC
GCGCGCCTCATGCGCAACCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGAGGGGAGAAGGTACTTCTACT
ATTGCTCTTACTACTAGAGCATCACTAGTTTTTCATCTTCCTGCACGGGATGGAAGCAGAGCTGAAGAGCTTGCGTTCGT
GTAAGCAGATTGACGAGAACGTGCAGCGGGAGATCATCAACCACAGGTCGCTGCGCCACCCCAACATCATCCGCTTCAAG
GAGGTCATCCTCACCCCGACGCACCTCGCCATCGTCATGGAGTACGCCTCCGGCGGGGAGCTCTTCGAGCGCATCTGCAA
CGCCGGCAGGTTCAGCGAGGACGAGGTACGCCCATCCATCATCCTCTCCCTCCCTTTCCATGCCCCATCGATCGATCACC
GATTCGCCATGACGTTCTCCGTTCCCGCGTACGTGGACTACTACTGATCACTATAGACTATGCTAACCGCCCAAGCCTCT
GACTTTTCAGGCGCGTTTCTTCTTCCAGCAGCTGCTCTCAGGAGTCAGCTACTGCCACTCCATGGTACTCTTTCCTTTTC
GGGTGATTCCACAGTTAGTTAGTCTGTTACGGTAGCTACTACTAAAATGGTTTCTGTCTTTTGTTAAGCAAGTATGCCAT
CGTGACTTGAAGCTGGAGAACACCCTGCTGGACGGGAGCACGGCTCCTCGCCTCAAGATATGCGACTTTGGCTATTCCAA
GGTACAGT------------------------------------------------------------------------
-------------------------------------------ACTTGCTAAAACAAGATACCACCTGCTTCACTGTCGC
--AGGCTTGCAGTTTTCAGCAACCAACATGTTC---ACTCTGTTTACATGCCAAATTGGGGGTTATGCTCTGCTTGTCAT
CCTAG----TTTTTGTGCCCTAGTGTATCGGCCTGTTATTCTGCTCATTGTTGTTTTGCATATT-TGTATTTGCAGTCGT
CGGTTCTTCATTCGCAGCCAAAATCTACCGTTGGAACACCGGCATACATTGCTCCGGAGGTTCTTCTGAAGAAGGAATAT
GATGGAAAGGTATGCATACAAGGGTTTAAAATTTCAACGAAATTTCATTGAAAATTTCGCATATTTCGGTGGGGTCCAAA
ATGCTTATAGCCCTGAAATTTCAAGCCCAATTCAAATTT-AAATTTAAATTAGGT---------TAAAATTTATTTAATC
TGAAAACTCACAGTGCGAAATAATTCCTGAAATATGCGTAATAATTTCTGAAATGTGCGAAATTTT-------------A
TCTGGGTGACGTCCGATTTTTTTTTTTTTGTTTCTGAAACTAAAAGCCTTGATGCATACATATTGGTGCC-------CCA
TGTTAATATTACTTTTCATGATATCCTAATCCTGTTGTTTTATCTAATGTTTATGCCCCTTTTTCTGCACTTGGGCAACC
ATATTTGCATTGCAAAGCATTTCCATTTGTGAGATGCATGATGTGTATATAATGAGTCCCATGGTACTACTAGACTCTGT
GATGT-----ATCATCTCAAGTTACCTACCGCTAATCCTTCGTTCCTCGATGAAATGAAGATTGCGGATGTGTGGTCCTG
TGGAGTGACACTTTATGTTATGCTAGTTGGTGCATATCCCTTTGAGGATCCTGATGAGCCCAAAAATTTTAGGAAGACAA
TTCAGGTTCCCATTCTG--AGCCCATCTTAATTTCTTGACCATCCCTGTTATTGTTCTGCACACAAAGCTAATGCGCTTG
TTTTGCCAGAGGATATTGAGTGTGCAGTACTCGATTCCCGATTACGTGCACATATCTTCCGAGTGTCGAGATCTTATCGC
CAAGATTTTCGTTGGCAACCCAGCTACCGTGAGTACTTACTACCAAGATTTTCGAGTCGCTATATGTTGCATACAGATTC
T---------TTTTGAGGTTGATACCTTTCATGTCGACATGCAGAGAATCACAATCCCGGAGATAAGAAACCATCCGTGG
TTCTTGAAGAACCTCCCAGCTGACCTAGTGGACGACAGCACCATGAGCAGCCAGTATGAGGAGCCTGAACAGCCGATGCA
GAGCATGGACGAGATCATGCAGATCCTGGCGGAGGCCACCATCCCGGCCGCTGGTTCCCGGATCAACCAGTTCTTGAACG
ACGGTCTGGACCTTGACGACGACATGGACGACCTTGATTCAGACGCCGACCTCGACGTCGAAAGCAGCGGGGAGATAGTG
TATGCTATGTGACAGTGCAAAACCTCTCAAC-------------------------------------------------
---------TCAGAAGGGATAGGGTACCGCGGTGCTTGATAGCCCGCCCACAAATGTTACTTTGTTG---TAGTTGGTCT
CTGCACTTCCAATGTTGTAGTACAACGGTTTGGCCTTTTGGATGTGACCTTGTGTTGCTTCAATGCTGTGTTGGCTATCT
CTGCTGATTTGAGAACTGGTAGATCATCTGTAACCC---GTGTCGTCACATCATGTTTGTACCATGTATATGTGTTGTAG
GCAAATAAGAGACACTACAGTTTGATCAGTTCCA--------------------------------------------TT
TCGACCTTTCAGTTCAGATGAGTTTGTGTGTTTCTGCATTGTGGTTCTTGCTATGATTCAGTGTGTCCATTTACGTGCAG
GGTTCCAG-----------TGCACTCTGTTCAGATAGCAGA--CTCATATTATTGAGCAATTTTGAGTTGTGCATATTAG
CATCAGATTTCAGCATATCGTGGGCTCATCTCACCTATTGAGTAGTTCAGGAGTGAATAAATTATGAACCATTGTGGAAT
CTTTCTCTGTCTCTCTCCCACCCAAGTCGT-----AGGCACACAT--------------------------------GAC
TGATAACGATAGGGCCACGGGGGACGACGTCGCTCTCGGCGCCTCGTCAACCAAAAAA----------------------
----------CAAGTAAGACAAGCCAGATTAACAAAATAACCCAGAATAATCTCCCAAATTATGCAAATGCCATAGATCA
-----TACTTCACCAAGAAGCATTTGGCCATCTCATGTA-----------------------------------------
--------------------------------------------------------------------------------
-------GGAGTATCATTCAACTGAAAGCACAAAA-CTCCACGGCAACCCTGGATTATTGTCACCAACTCACCATAACCT
CCATACATCAAGCAAGCCGTTATTCGAAAACAAAAA-CATGCACCGGATTTATTGCACAGGCAGCATGATCTAAAGTCGA
AA--CCCTTCACTTACATGTGACAGTTGAGGTCACTGCCAAGGCAGCGATCCAGAGCAAACACATCATGCAGACACCAAG
GGATTGAACACATGGCCGACGAATAGCACCACCCCTGTGAGGTCTTCTCGGATAAGGAAGAGGAAAGGGTGATCCG
>SNPs
---------------S-----------------------------------------S-----------S----------
----------------S---------------------------------------------------------S-----
-----------------S------S--------S---------SS-----------------------------------
--------S----------------------S--------S----SS------S-----S----------------S---
--------------S----------------S-------------------------S----------------S-----
-S---S------------------S--------------------------------------------------S--S-
--------------------------------------------------------------------S-S---------
S------------S-S---SS---S---------S--SS----SSSS--------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------SS--------SSSS-----
--------------------------------------------S---------------------------------S-
-----------------------------------S--S----S-----------------S------SS---S--S---
---------------S----S-----------------------------------------SSS--------S------
------S-----S-------SS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
---------------------SSSSSSSSSSSS------------------------------S---S--------S---
---S-----------------------------------------------------------------S----------
------------------------------------------------------------S-------S-----------
------------------------------------------S------------SS---S--S----------------
------SSSS--------------------------------------------------S-------------------
---S----------------------------------------------------------------------------
--------------------------SSSS-S-------------------------------------------S----
-------SS-S-SSS------S--------------------------S---S---------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---S----------S--------S----------S---S-----S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SS--------S---------S-----------------------
--------------------------SS---------------S-----SS-S------S--------------------
--------------------------------------------------------------------------------
---S------------S--------------------------S------------------------------------
-----------------------S--------------------------------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
SS------S-------------S-------S-S-SS-----------------S-S--------------------S---
-----SSSS---------------------------------S------SS-SS--SSSS-S-SS---------------
----------------S-----------S--------------S-----------------------S------------
---------------------------------------------------------------------S-----SS---
-------------------------S---S---------S---S-S-------------------------S---S----
------S------------------------------S----------------SS---S-----S-------S------
--------------------------------------------S-------S------------S--------------
---S----------------------------------------------------------------------------
---------------------------S-------------------S--------------------------------
----------S----------S-----S-----------------S----------------------------------
---------S--S-------------------------------------------------------------------
----------------SSS---S---------S-------------------SS-SSSS---SS-SSS------------
S-------------------------------------S-----------------------------------------
-----------------------------------S-SS---SSSSS-S-SS-S-SSS-S-S-SSSSSSS-S-SS-S-S-
SSSSSSSSSS----S---------S---------------------------------S---------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
----------------------------S---------S-S----------------------------S----------
S------------------------------------------------------------------SSS----------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------------S--------------------------
--S-----------------------S---------SS---SS-------------------------------------
------------------------------------------------------S-------------------------
------S-----SSSSS---SSSSS-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
---S----------------------------------------SS-------------SSSSSSS--------------
-------------------------------------------------S--------------------------S---
------------------------------------------S---S-SSSSSSSSSSSSS-SS-SSSSSS--SSSSSSS
SSS--SS--SSSSS-SSS-SSSSSSS--SSSSSSSSS-SSSSSSS-----------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--S-------------------S------------------S--------------------------------------
----------------------------------------------------------------------------
>forward_1037
--------------------------------------------------------------------------------
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---------------------------------------------------------ACACACCCACAGCGCTAAAT---
--------------------------------------------------------------------------------
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>reverse_3046
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-----TCCCTCCGTCCGGAAATACT-------------------------------------------------------
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----------------------------------------------------------------------------
>forward_3062
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--TACTCCCTCCGTCCGGAAAT----------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>reverse_4148
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-------------------------------------------------------------------AGCTTGCTTTGCC
AGAGGAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>forward_3065
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-----TCCCTCCGTCCGGAAATACT-------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4532
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---------------------------------------------------CGGTTCTCGGATCAACCAGT---------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>forward_3159
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-------------------ATTTCCGGACGGAGGGAGTA-----------------------------------------
--------------------------------------------------------------------------------
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>reverse_4721
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TCTCAGAAGGGATAGGGTACCG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>forward_3163
--------------------------------------------------------------------------------
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-----------------------CCGGACGGAGGGAGTACATA-------------------------------------
--------------------------------------------------------------------------------
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>reverse_5123
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--CTCCAGGTGTTGAGATATGCACT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
