>input_sequence_23788
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----------------ACGAAAACTAGGGCTTTGCACAGGGTTTAGCGGCGATCTCTCCCCCTCTTCCTCTCGTCGACGC
GCATCCATGGCGGCCGCCACCTCCTCCTCCCTCCTCGGCCGCCGCTTCCTCC---TCCTCTCCCGCCGCTTCGTCGCTTC
TCCTCTCCGCTCCTTGTCCACCACCGCGCCCCCGTCCTCACACTCGGCCGCGGGATCCGATGCCGAGCCCGACCCTGAGC
CACCCGCCGATCAGGGTAATCAGTACCGGAGCCAGCCGAGGCCTCCCATCACCACCCGCCCTCTCGAGAATGGCCTCGAC
CACGGCATCTACAAGGTTTTATGGAACCCTTGGTTCTCTTCTCCGTTTGGGCTTGTTTGGC-GAGAGCCGAAATGTGATG
TGCGCTTTTTGTTTTGGTGGATTCACGAAGGCTATAATGGTGGGAAAGGTGGGTCAAGAGCCTGTGCAGAAGCGGCTGCG
GAGTGGGAAGACCGTCGTGCTGTTCTCGCTGGGCACCGGCGGCATCCGCAACAACCGCCGCCCGTTGGACAACGAGGAGC
CGCACCAGTACGCGGAACGCAGCTCCGTGCAGTGGCACCGCGTATGCATCTACCCAGACAGGCTGGGTAGCCTCGCGCTG
AAGCATGTCAAGACCGGGTCAGCGCCTTTGCCTTGCCTCGAAC-TTGCGTTGTTTAGATATTCCTTTTGTTGGATGCAAT
TTTGACCTGCATCAGTTTAGAGGTAGCGAGATGTTTGAGCGCGTCAGTCTCAGCTTTGCTAACTCGGATCATACCGCCCA
AACCCCTTGCTAATTCAGCTTTGCGAAATACTCGCTCCATTCATAAATATAGGATG-TTTTAACTTTTTTGTGAATGAAT
TGGATGTATATAGACACATTTTAGTGTGTTTGTTCACTCATTTCATTCCGTAGTATGTAGTCCATATTGAAATATCGAAA
ACATCTTCTATTTGTGAACGGAGGAGTATTATGTAAACAGGCATCCTTAAGTCCTCTAATGTCGTTTTCAAGCCTATTCA
TTTGTTCATCCTTCCAGCCACTCATTCACCTAGATTGCAAAATCTGAGTACTTGATTCTCTTGGTGAATAATTGAGTATG
GACCATTTACCTTTTACTAAGTTCCAATTAGTGGAAGTTAGAGAGCACTGTTATTCAGTTCCGGTGGATTGGTTATCTTA
ATTGTAGTTGGAAACTGAATATGCGTCCTGTTGGTTGTAGATTTGAATTTGCATATTGGCCAAGTGGCAACATGGTCAGT
GTAGTTTGAGCTTTATGCTGCCCCCTTTGTGTTTCTTCTTCCTTTTATTAATTGACTTCAATTATACCTCTAAA-GTTGA
TCAGTTGCAACATTTCAGATCTGTTCTCTATTTGGAAGGAAATATTGAGACAAAGGTGTTCTCCGATCCTATAACTGGGC
TCGTTAGACGCATAAGAGAAATAGCTGTTCGAGGAAATGGTATGTTTCTTTATTAGATATCACATAATCACCTTTTTTTT
TGGTCTATACCTCCATTATTTGTTTTCAGCCTTGTCTTAGAACCTTAAGTTTTTATGTTACAGGAAAAATCTTCAGTTTT
AAATTTTACTCGGGGAAACTTGTTAAATATTATAGGTTAAATGCCACCATTAGTAATTTTGTTATTTTTCTAAATGTTTC
TTGTTACAAACTTTGCTTTAAGGGTAGCATATTGAATAATCATTGTTCAGTTATTCAGGATAACGGCTAGCTGCTGACTT
CA--TTCCTTCCCCCACTTTTGTTCTGAACAAAAAGATT-GCCATCTCATCATATGTTAGTGTAACCACATACAGTGCTG
TAGTGAAGAAAAAACATAGAAAATACATTTTTGAAGCCCCATGAATGAAATCACTTGTAATCAAAATATTTTCTGCATTC
CCACTATCTGGGTTTGGTAT-ATCTTCAGGCTGATTCACAACTGCACAAGCAGAGTACTACTAGCTGCTCTGCCGCAAAC
CTATATAACAGCCATCTTCAGTTCATGGGGCATCTCCTCCTTGATCCATACTTCCCAATGTTTCAAACGGACTTATGAGG
CTGTTGCGAACTGTGCTCTACATGTAATGTGTTGTTGTCTAAACACTTAATGTGTTCAGGAGTCTAGATTGTGCACTGAA
ATACCAACTGCATAAGCACTTGCATATTATGTAGTAGTTTGAATCTTCATCTTCTACATTTTCACTTTAGATCACATTTT
CTTCTGCATTTTAACATAAAAAAGTAGCC---GATTGTAATTTGTTTTGTGTCAATTAAAACATCAAATCATTGCTAAAT
AGAGCTGTATTGATTTCGTCTCTTGAACTACTAATTGTAGCATGATAAAACTCTGTTGTTTGTGATTTTCCACGCCAAAG
CTTAGACTCCGCTTGTGTTTTTTCCATACATTATTGGGTTAGGCTCTAACCTACTCTCTCCGTCCCGAATTACTTGTCGC
GGTTCAGGATGGAGGGAGTATGTTACTACTGCAGGGTTCTAACTATTTACCCATGTGACGACACAATTATTTTATTCAGA
ACAACTCTTGATCTAGTCCACTCTAAAATCATCAAAACACCATCTAATACTTTCAGATAAAGAACAACTAACCATATAAA
TGTTCCATAGCCGGCTTCAGCGTTGTCCCTTAATTTACTCATTTTGGTTCGTGACAAAGTTTATGTAGTATACCAATTGT
CTCATTAATGATGTCCACATGCCCCTTGTAGTCACATTGATAAGCTGATTTTCTGTGCTGGTTTTTTTATGCTCAGTTTT
CAACATATGAATTAAAACTTGCATGGCATTTGGAATTATGTTAAGCATTGCGATTTATGCTCAGTTTCAACGTACGAATT
AAAGTTACATGGCATTTGGAATTATGTTCAGCTTTGTGACCGTGTTTAGGTTTTGGTAGAATATGATAAA-GTTGTTTCT
TACGAACAGGTCGGTTTCTGTTTCTTGGTAACGATGGGAATGGCCCCAAGATAGGTGAAGTGAAGGGCGTTGGGTACTTC
TGAAAGTTGGGTCCAACAGAATCCATTTGAGAACTGAGACTGAGGTACTGGACGTGTGCTACACTTTGGAGTATTGTCAA
CATCTTAGCATTGGACAAATAATGGTATGTTGTTGCC-------------------------------------------
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>chr3A_1_TraesCS3A01G231400
GGGCTTGATTTAGCTTTCGTTTACGAGTTTATGGTTTATTTTGGACTTTTTCCCTTGTGAAATTATACCCATTCACTTTT
GCGTACCGTGGTTACTAGATGACTGAATCCGCACAGACAGAAGAGAAGTTTTATGGGAGTACCAATGGAGAAAAGAGATC
AATGAAACCCTTGTCCTCACACTGTCATGG--------------------------------------------------
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------------------------------------TTTTACAGAGATTGGCATGCAAGGCTCAAGCTTAATTGCACAAT
AAAAATCCCGTGACATTGATCCTAACACATGCTTCCCACAACAGTGCTTCCAAAAAGTAAAATGCACAACGGTGCT---T
TTTCAGAAAGTGA----------------------AAGTGAAAAGGTACCGGTGTGCTTCCCAAAAAAGTGAAAAGCACA
AATTTGCCTTTGGTTTCTATTTTTTGGGCTTG---TTTTTCCTTTCTATCAATTTCTGTTTTTTTGTTTTCATTA--TTT
TTATTTTTTATTTTCATTGTATCATCTTTTTTG---ATTTTTTTGTCCAAATCTATTAACATGTGATATAGTTTCAAAGA
TCTCAATGAAAGAAACATGATGAAGAAAACGATTTATGATTTGGATGCAATGTTCAAGAGGTAAAACATTAAAAAAAACA
AATGAATGAAATAACACAAAACTCCCATATTTGTGACAAGTGTCACACATGCAGTGCGTTACTTATCATCACCAAATGAG
AGTGATCTTTGCAAAGGGTACCCTTAACTAGTTTTTTTTTTGGAGAATGGTACACTTAACTAGTGATTTCGATGGAAAAG
AGAAGCGATAAGATTGCCGGCAGG-TCGACCTAACCGTTAAGAAGGAAAGAAAATGGGCTTACTGGGCAGACCCATGTGG
GCTCGCATAGGCGACGCGAACTCTATATGCTGCTGAGAGCGGTATATTGCATTTGCGCATGCTATACACGTGCACAGAGC
ATGTCACA-ATTTTGTTTTCG---------------AATCATCATCATCAGTCATCGTCCTAGCCGGCGGCCCACCAAAA
GCCCCGGACGCAACCCACGAAAACTAGGGCTTTGCACAGGGTTTAGCGGCGATCTCTCCCCCTCTTCCTCTCGTCGACGC
GCATCCATGGCGGCCGCCACCTCCTCCTCCCTCCTCGGCCGCCGCTTCCTCC---TCCTCTCCCGCCGCTTCGTCGCTTC
TCCTCTCCGCTCCTTGTCCACCACCGCGCCCCCGTCCTCACACTCGGCCGCGGGATCCGATGCCGAGCCCGACCCTGAGC
CACCCGCCGATCAGGGTAATCAGTACCGGAGCCAGCCGAGGCCTCCCATCACCACCCGCCCTCTCGAGAATGGCCTCGAC
CACGGCATCTACAAGGTTTTATGGAACCCTTGGTTCTCTTCTCCGTTTGGGCTTGTTTGGC-GAGAGCCGAAATGTGATG
TGCGCTTTTTGTTTTGGTGGATTCACGAAGGCTATAATGGTGGGAAAGGTGGGTCAAGAGCCTGTGCAGAAGCGGCTGCG
GAGTGGGAAGACCGTCGTGCTGTTCTCGCTGGGCACCGGCGGCATCCGCAACAACCGCCGCCCGTTGGACAACGAGGAGC
CGCACCAGTACGCGGAACGCAGCTCCGTGCAGTGGCACCGCGTATGCATCTACCCAGACAGGCTGGGTAGCCTCGCGCTG
AAGCATGTCAAGACCGGGTCAGCGCCTTTGCCTTGCCTCGAAC-TTGCGTTGTTTAGATATTCCTTTTGTTGGATGCAAT
TTTGACCTGCATCAGTTTAGAGGTAGCGAGATGTTTGAGCGCGTCAGTCTCAGCTTTGCTAACTCGGATCATACCGCCCA
AACCCCTTGCTAATTCAGCTTTGCGAAATACTCGCTCCATTCATAAATATAGGATG-TTTTAACTTTTTTGTGAATGAAT
TGGATGTATATAGACACATTTTAGTGTGTTTGTTCACTCATTTCATTCCGTAGTATGTAGTCCATATTGAAATATCGAAA
ACATCTTCTATTTGTGAACGGAGGAGTATTATGTAAACAGGCATCCTTAAGTCCTCTAATGTCGTTTTCAAGCCTATTCA
TTTGTTCATCCTTCCAGCCACTCATTCACCTAGATTGCAAAATCTGAGTACTTGATTCTCTTGGTGAATAATTGAGTATG
GACCATTTACCTTTTACTAAGTTCCAATTAGTGGAAGTTAGAGAGCACTGTTATTCAGTTCCGGTGGATTGGTTATCTTA
ATTGTAGTTGGAAACTGAATATGCGTCCTGTTGGTTGTAGATTTGAATTTGCATATTGGCCAAGTGGCAACATGGTCAGT
GTAGTTTGAGCTTTATGCTGCCCCCTTTGTGTTTCTTCTTCCTTTTATTAATTGACTTCAATTATACCTCTAAA-GTTGA
TCAGTTGCAACATTTCAGATCTGTTCTCTATTTGGAAGGAAATATTGAGACAAAGGTGTTCTCCGATCCTATAACTGGGC
TCGTTAGACGCATAAGAGAAATAGCTGTTCGAGGAAATGGTATGTTTCTTTATTAGATATCACATAATCACCTTTTTTTT
TGGTCTATACCTCCATTATTTGTTTTCAGCCTTGTCTTAGAACCTTAAGTTTTTATGTTACAGGAAAAATCTTCAGTTTT
AAATTTTACTCGGGGAAACTTGTTAAATATTATAGGTTAAATGCCACCATTAGTAATTTTGTTATTTTTCTAAATGTTTC
TTGTTACAAACTTTGCTTTAAGGGTAGCATATTGAATAATCATTGTTCAGTTATTCAGGATAACGGCTAGCTGCTGACTT
CA--TTCCTTCCCCCACTTTTGTTCTGAACAAAAAGATT-GCCATCTCATCATATGTTAGTGTAACCACATACAGTGCTG
TAGTGAAGAAAAAACATAGAAAATACATTTTTGAAGCCCCATGAATGAAATCACTTGTAATCAAAATATTTTCTGCATTC
CCACTATCTGGGTTTGGTAT-ATCTTCAGGCTGATTCACAACTGCACAAGCAGAGTACTACTAGCTGCTCTGCCGCAAAC
CTATATAACAGCCATCTTCAGTTCATGGGGCATCTCCTCCTTGATCCATACTTCCCAATGTTTCAAACGGACTTATGAGG
CTGTTGCGAACTGTGCTCTACATGTAATGTGTTGTTGTCTAAACACTTAATGTGTTCAGGAGTCTAGATTGTGCACTGAA
ATACCAACTGCATAAGCACTTGCATATTATGTAGTAGTTTGAATCTTCATCTTCTACATTTTCACTTTAGATCACATTTT
CTTCTGCATTTTAACATAAAAAAGTAGCC---GATTGTAATTTGTTTTGTGTCAATTAAAACATCAAATCATTGCTAAAT
AGAGCTGTATTGATTTCGTCTCTTGAACTACTAATTGTAGCATGATAAAACTCTGTTGTTTGTGATTTTCCACGCCAAAG
CTTAGACTCCGCTTGTGTTTTTTCCATACATTATTGGGTTAGGCTCTAACCTACTCTCTCCGTCCCGAATTACTTGTCGC
GGTTCAGGATGGAGGGAGTATGTTACTACTGCAGGGTTCTAACTATTTACCCATGTGACGACACAATTATTTTATTCAGA
ACAACTCTTGATCTAGTCCACTCTAAAATCATCAAAACACCATCTAATACTTTCAGATAAAGAACAACTAACCATATAAA
TGTTCCATAGCCGGCTTCAGCGTTGTCCCTTAATTTACTCATTTTGGTTCGTGACAAAGTTTATGTAGTATACCAATTGT
CTCATTAATGATGTCCACATGCCCCTTGTAGTCACATTGATAAGCTGATTTTCTGTGCTGGTTTTTTTATGCTCAGTTTT
CAACATATGAATTAAAACTTGCATGGCATTTGGAATTATGTTAAGCATTGCGATTTATGCTCAGTTTCAACGTACGAATT
AAAGTTACATGGCATTTGGAATTATGTTCAGCTTTGTGACCGTGTTTAGGTTTTGGTAGAATATGATAAA-GTTGTTTCT
TACGAACAGGTCGGTTTCTGTTTCTTGGTAACGATGGGAATGGCCCCAAGATAGGTGAAGTGAAGGGCGTTGGGTACTTC
TGAAAGTTGGGTCCAACAGAATCCATTTGAGAACTGAGACTGAGGTACTGGACGTGTGCTACACTTTGGAGTATTGTCAA
CATCTTAGCATTGGACAAATAATGGTATGTTGTTGCCGCAGTTTGTTAGTTTCCCCTTGCCTAGTCACATTCCTGTCTTC
ATTAAGCTTTCAACGCCATTGTAGATGCCATG------------------------------------------------
---------------------------------------------------------TAATTGACAAGTGTCTGACTTGT
ACGGTTTAACTCTGGTTGGAGTACAATGCATGCTCTTATGGAGAGAATTTAATCTCCCACTATGTACTCCCTCTGTAAAG
AAATAGC-------------------------GATCTAAACGCTCTTATATTTCTCTATGGAGGGAGTACTTTTTACAGT
TACTTTCTCGCTGTGTTTCTCCCTTTTTTGGCCACAGATGTTGCTGGGTACTTCAGGATTAAGCTAGTGCGATAGCAATA
AGATTGAAAATATACATTAGGACGAATAATTCACGCTGCTAATCCCTCCATACATAAATATACTTCCTCCGTCCTCAAAT
AAGTATAGAAATTTTAAGACGAATTATGGAATGGAGTAGAAAATGCATTGGAAAGGTGCAAGCTACCATCTCTCTCCTCT
TTAATTTCCTCCCACCTTCAATGAGCTAAGCGTATGTAGAAAATGAGATCATGTGTT-----------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
TGTTATTGGGCTTGATTCCTGTG--ATGAGAGAGAATTATTGTTTTTCTACTTTAAAATGCATTGAGAAGATAGAAGCAT
TCTTTTGTGGACAAATTTCAAATGCTAAATGTTCACTTATTTGAGGACAGAGGAATACATTAGCACCAATAATTACATTT
ATATACCCTTAATTTTAAGTACTCCCTCTATCCATAAATAG---------------------------------------
--------------------------------------------------------------------------------
-----TATTTATGGTATATT-TGAGATTTATGTTGACCATGATAAAATCGATAATACATGAGATGTATGCTAGAAAAATC
ATACTATTGGAAACTCCTTTCGAATATGAATTCGATTGCCAATAGGGCATATCGGAGACCAAGATCCATGGAGGCCTTTA
TTTGAAAAATTCAAAACCAAACTTTCAGTTTCAAAAAATTCTGAAAACAAATACACATGTATACAAGGATGTAATCTGTC
TGTAAAATTTGAGGATGAAATACCTTGAATTGCG
>chr3B_1
GGGCT---------------------------------------------------------------------------
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-------------TGATTTAGCTTTCGTCTACGAGTTCATGGTTTATTTTGGATTTTCCCCCCTACAAAATTATACCCAG
TCACTTTGGCGTAACGTGGTTACTAGACGACCGAATCCACACATACAGAAGAGAAGTTTTACGGGAGTACCGATGGAGAA
AAGGGATCGATAAAACTCTTGTCCGCACACCAT-----------------------------------------------
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-------------------------------CATGGTTTTACAGAGATTGGCATGCGAGGCTCAAGCTTATCTACACAAT
AAAAATCCTGTGACATTGATCCTAACATATGCTTCCCATAGCTGTGCTTCCAAAAAGTAAAAAAAAAACACAACTGTGCT
TTTCAGAAAGTGAAAGCACATGTGTGCTTCCCATAAAGTAAAGAAATACCGGTGTGCTTCCCAAAAAAGTGAAAAACACA
AATGTGCTTTCGGTTTCTATTTTTTTCAGCTTTATTTTTTCCTTTTTATGGTTTTTGTTTTTTTTTCTGGTTTTCATTTT
TTATTTTTCATTTTCATTGTATCCTCTTTTTTTTCTATTTTTTTTGTCCAAACTTTTAACATGTGATATAGTTACCAAGA
TCTCAATGAAAGAAACATGATGGAGAAAACGATTTATGATTTGGATGCAAGGTTCAACAGGTAAAACATTAGAAAAACGT
ATGAAA--AAAAAACACAAAACTCGCGTA-TTGCGACAAGTGTCATGCATGCAGTGTGTTACTTATCATCACCAAATGAG
AGTGATCTTTGCAAAGGGTACCA-TAACTAG-TTTTTTTTTGGAGAATGATACACTTAACTAGTGATTTCGATGAAAAAG
AGAAGCGACAAGATTGCCGGCAGG-TCGACCTAGCCGTTAAGAAGGAAAGAAAATGGGCTTACTGGGCAGACCCATGTGA
GCTCGCACAGGCGACGCGAACGCTATATGCTGCTGAAAGCGGTATATTGGATTTGCGCATGCT------GTGCACACAGC
ATGTCACA-ATTTTGTTCTCG---------------A-----------------TCGTCCTAGCCAGCGGCCCACCGAAG
GCCCCGGACGCAACCCACCAAAACTAGGGCTTTGCACAGGGTTTAGCGGCGATCTCTCCCCCTCTTCCTCTCGTCGACGC
GCATCCATGGCGGCCGCCACCTCCTCCTCCCTCCTCGGCCGCCGCTTCCTCC---TC---TCCCGCCGCTTCGTCTCTTC
TCCTTTCCGCCCCTTGTCCTCCACCGCGCCCCCGTCCTCACACTCGGCCGCGGTATCCGATGCCGAGCCGGACCCTGAGC
CACCCGCCGATCAGGGTAATCAGTACCGGAGCCAGCCGAGGCCTCCCAACACGACCCGCACCCTCGAGAATGGCCTCGAC
CACGGCATCTACAAGGTTTTATGGAACCCTTGGTTCTCTTCTCCGTTTGGGCCTGTTTTGGTGAGAGCCGAAATGTGATG
TGCGCTTTTTGTTTTGGTGGATTCGCGAAGGCTATAATGGTGGGAAAGGTGGGTCAAGAGCCTATGCAGAAGCGGCTGCG
GAGTGGGAAGACCGTCGTGTTGTTATCGCTGGGCACCGGCGGCATCCGCAACAACCGCCGCCCGTTGGACAACGAGGAGC
CGCATCAGTACGCGGAACGCAGCTCCGTGCAGTGGCACCGCGTATGCATCTACCCGGACAGGCTGGGTAGCCTCGCGCTG
AAGCATGTCAAGACCGGGTCAGCGCCTTTGCCTTGCCCCGAGCTTTGCGTTGTTTAGATTTTCCTTTTGTTGGATGCAAT
TTTGACCTGCATCAGTTTAGAGGTAGCGAGATGTTTGAGCGCGTCAGTCTCAGCTTTGCTAACTCGGATCATGCCGCCCA
AACCGCTTGCTAATTCAGCTTTGTGAAATACTCGCTCCATTCATAAATATAGGACG-TTTTAACTTTTTTGTGAATGAAT
CGGATGTATATAGACACATTTTAGTGTGTTTGTTCACTCATTTCATTCCGTAGTATGTAGTCCATATTGAAATATCAAAA
ACATCTTCTATTTGTGAACGGAGGAGTATTATGTAAACAGGCATTCTTAAGTCCTATATTGTCATTTTCAAGCCTATTCA
TTTGTTCATCCTTCCAACCACTCATTCACCTAGATTGCGAAATCTGAGTACTTGATTCTCTTGGTGAATAATCGAGTATG
GACCATTTACCTTTTACTAAGTTCCATTTAGTGGAAGTTAGAGAACACTGTTATTCAGTTCCGGTGGATTGGTTATCTTA
GTTGTAGTTGGAAACTGAATATGCGTCCTGTTGGTTGTAGATTTGAATTTGCATATTGGCCAAGTGGCAACATGGTCAGT
GTAGTTTGAGCTTTATGCTGCCTCCTTTGTGTTTCTTCTTCCTTCTATTGATTTACTTCAATTATACCTCTAAATGTTGA
TCAGTTGCAACATTTCAGATCTCTTCTCTATTTGGAAGGAAATATTGAGACAAAGGTGTTCTCCGATCCTATAACTGGGC
TCGTTAGACGCATAAGAGAAATAGCTGTTCGAGGAAATGGTATGTTTCTTTATTAGATATCACATAATCAGCTTC-TTTT
TTGTTCATACCTCTGTTATTTGTTTTCAGCCTTGTCTCAGAACCTTAAGTTTTTACGTTACAGGAAAAATCTTCAGTTTT
AAATTTTACTCGGGGAAACTTGTTAAATATTATAGGCTAAATGCCACCATTAGTAATTTTGTTATTTTTCTAAATGTTTC
TTGTTACAAACTTTGCTTTAAGGGCAGCATATTGAATAATCATTGTTCAGTTATTCAGGATAACGGCTAGCTGCTGA-TT
CCATTTCCTTCCCCCACTTTTGTTCTGAACAAAAAGATTTGTCATCTCATCCTATGTTAATGTAACCACATACAGTGCTG
TAGTGAAGAAAAAACATAGCAAAGACATTTCTGAAGCCCCACGAATGAAATCTCTTGTAATCGAAATGTTTTCTGCATTC
CTGCTATCTGTGTTTGGTATCATCTTCAGGCTGATTCACAACTGCGCAAGCAGAGTACTACTAGCTGCTCTGCCACAAAC
CTATATAACAGCCATCTTCAGTTCATGGGGCATCTCCTCCTTAACCCGTACTTCCCAATGTTTCAAACGGACTTATGAGG
CTGTTGCGAACTGTGCTCTACATGTAATGTGTTGTTGTCTAAACACTTAATGTGTTCAGGAGTCTAGATTGTACACTGAA
ATACCAACTGCATAAGCACTTGCATATTGTGTAGGAGTTTGAATCTTAATCTTCTACATTTTCACTTCAGATCACATTTT
CTTCTGCATTTTAACATAAAAAAGTACTACTTGATTGTAATTTGTTTTTCGTCAATCAAAACATCAAGTCATTGCTAAAT
AGAGCTGTATTGATTTCGTCTCTTGAACTACTAATTGTAGCATGATAAAACTCTGTTGTTTGTGATTTTCCATGCCAAAG
CTTAGACTCCGCTTGTGTTTTTTCCATACATTATTGGGTTAGGCTCTAACCTACTCCCTCCGCCCCGAATTACTTGTCGC
GGTTCAGGACGGAGGGAGTATGTTACTACTGCAGGGTTCTAACTATTTACCCATGTGATAACATAATTATTTTATTCAGA
ACAACTCTTGATCTAGTCCACTCTAAAATCATCAAAACACCATTTAATACTTTCAGATTAAGAACAACTAACCATATAAA
TGTTCCATAGCCGGCTTCAGCGTTGTCCCTTAATTTACTCATTTTGGTTCGTGACAAAGTTAGTATAA-----CAATTGT
CTCATTAATGATGTCCTCGTGTCCCTTGTAGTCACATTGATAAGCTGATTTTCTGTGCTGGTTTTTTTATGCTCAG-TTT
CAACATATGAATTAAAAGTTGCATGGCATTTGGAATTATGTTAAGCATTGCGATTTGTGCTCAGTTTCAACGTACGAATT
AAAGTTACATGGCATTTGGAATTATGTTCAGCTTTGCGACTGTGTTTAGGTTTTGGTAGAATATGATAAAAGTTGTTTCT
TACGAACAGGTCGGCTTCTGTTTCTTGGTAACGATGGCAATGGCCCCAAGATAGGTGAAGTGAAGGGCGTTGGGTACTTC
TGAAAGTGAGGTCCAACAAAATCCATCTGAGAACTGAGACTGAGGTACTGCACGTGTGCTACACTTTGGAGTATTGTCAA
CATCTTAGCATTGGACAAATAATGGTATGTTGTTGCCGCAGTTTGTTAGTTTCCCCTTGCCTAGTCACATTCCTGTCTTC
ATTAAGCTTTCGACGCCATTGTAGATGCCATG------------------------------------------------
---------------------------------------------------------TAATTGACAAGTGTCCGACTTGT
ACGCTTTAACTCTGGTTGGAGTACAATGCATGCTCTTATGGAGAGAATTTAATCTCACTAT-------------------
------------------------------------------------------------------GTACTTTTTACAGT
TACTTTCTCGCTGTGTTTCTCCCTTTTTTGGCCACAGATGTTGCTGGGTACTTCAGGATTAAGCTAGTGCGATAGCAATA
AGATTGAAAATATACATTAGGACGAATAATTCAGGCTGCTAATCCCTCCATCCATAAATATACTCCCTCTGTCCTCAAAT
AAGTATAGAAATTTTAAGACGAATTATGGATTAGAGTAGAAAATGCATTCGAAAGGTGCAAGCTACTATCTCTCTCCTCT
TTAATTTCC-CCCATCTTCAATGAGCTAAG--------------------------------------------------
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----------------------------------
>chr3D_186
GAAAGTGAAAAGGTACCGGTGTGCTTCCCAAATAAGTGAAAAACACAAATGTGCTTTCAGTTTCTATTTTTTAGCTTTGT
TATTTCCTTTTTATGATTTCTGGTTTCATTTTTTATTTTCATTATATCCTCTTTTTAATTTTTTGTCCAAACCTTAAACA
TGTGGTATAGTTTCAAAAATCTCGATGAAAAAAACATGATGGAGAAAACGATTTAAGATTTGGATGCAAGGTTCACGAGG
TAAAACATAAAAAAAAAATGAATGAAAAACACAAAACTCCCATATTTGCGACAAGTGTCACGCATGTAGTGTGTTACTTA
TCATCACCAAATGAGAGTGATCTTTGCAAATGGTACCCTTAACTAGTTTTTTTTGGAGAATGGTACACTTAACTAGTGAT
TTCAATGAAAAAGAGAAGCGACATGATTGCCGGCAGGTCGACCTAGCCGTTAAGAAGGAAAGAAAATGGGCTTACTGGGC
AGACCCATGTGGGCTCGCATAGGCGACGTGAGCGCTATATGTTGCTGAAAGCGGTATATTGCATTTGTGCATGCTATACA
TGTGCACACAACATGTCACAAATTTGTTTTCGAATTATCAGTCATCGTCCTAGCCAGTGGCTCACCGAAGGCCCCGGACG
CAACCCACCAAAACTAGGGCTTTGCACAGGTTTTAGCGACGATATCTCCACCTCTTCCTCTCGTCGACGCTCATCCATGG
CGGCATAAGTTCGAAGTTCGATTCATCCAGAGATATGTTTTTTGGGTATATTTTTACATCACATGTTAGGAAAAACAAAA
ACAAAAAACTCACTTCGTGCCTGGTGGGCCAACCCAGTTGCGTGCGCAGTCAACAATCCCAGGATTTTACGTGCCACATC
GATAATCCTTGTTTGGGAACGCTCTCAAGGTTCAAAATAGACCGGAATCAGAGAGTTTGGTGTGCTGATTCGAGGGATTG
GAAGTTTAGGGCTTGATTTAGCTTTCTTCTACGAGTTCATGGTTTATTTTGGACTTTTCCCCTGCG-AAATTATACCCAG
TCACTTTGGCGTAACGTGGTTACTAGACGACCAAATCCACACAAATAGAAGAGAAGTTTTACCGGAGTACCGATGGAGAA
AAGAGATCGATGAAACTCTTGCCCGCACACCGTCATGGTGATGTGGCCATTGACCGCACTATTCCATGTACACTGTAGAT
TGGAGGTTTTTGTATTGAGGTGCCGTCGACACAACCAAAGAAGCAAAAGATCAAACCAACCTTCAGAACACCATACAATT
TCTTTTGTATTGATCGTGTGTGTGGAGTGCCGGGACGTGAAGGCCGAAGCCCAAGGCAACATGGAGGAGTCCAAACCATG
TTGATTTAGCTTTAACATACGTATGTTCCTTGAGTACTACTAGTCTGTTTTGGATTTTTTTTGATCAGCTTGCTGGACAT
GTAATTAATTAAATCATGATTAGTTAGAATAGGAAAGAGATAAGAGTCCGTATCTTTTTAGCTTGTTTGTTAGGTCGGTT
GATTCGTTTTGCCTTAAAACAGGCAGGCCTCGGCCTTGTATGAGGCGGAAACTTTTAAGTGGAAAACTATGGAGAAAAGC
ATTAGCTTGGATGCGCCAAATATCTGTGTTGTTTGCTGATCCTTGAGGGATTTTGGAGCTGCTATATGTGTAGGATTTGA
TCCGATCAAATTCTTGCTCAAGTTTTTGTTCTTTGGTCTTCTCGCGTTTTTTTGCTTGATCCGAAGAGCCACTCTACTAC
TTCGACCCACGCTGCTGTTGCGACAATCGTTCGTCGACGTTCTTGCTATTTCATTGAGTACCGTGGAAGATTGGGCCAAC
AAACGACTCGTCATCTAGTCGTGTCCCATCACATGGTTTTACAGAGATTGGCATGCAAGGCTCAAGCTTATCTGCACAAT
AAAAATCCTGTAACATTCATCCTAACACATGCTTCCCACAGCCGTGCTTCCAAAAAGAAAAAGAAAAACACAACTATGCT
TTTCGGAAAGTGAAAACATATGTGTGCTTCCCATAAAGTGAAAAAGTACCGGCGTGCTACCCAAAAAAGTGAAAAACACA
AATATACTTTCGGTTTCTA-TTTTGTCAGCTTTATTTTTTTCCTTTTTATGATTTCTGTTTTTTTTCTGGTTTTCATT--
---TTTTTTATTTTCATTGTATCCTCTTTTTTG---ATTTTTTTTGTCCAAACCTTTAACATGTGATATAGTCTCAAAGA
TCTCGATGAAAGAAACATGATGAAGAAAACGATTTATAATTTGGACACAAGGTTCAAGAGGTAAAACATTAGAAAAAACA
AATGAATGAACAAACA-AAAACTCGCAAA-TTGTGACAAGTGTCACGCATGCAGTGCGATACTTATCATCACCAAATAAG
AGTGGTCTTTGCAAAGGGTACCCTTAACATG-TTTTCTTTTTGAGAATGGTACACTTAAGTAGTGATTTCGATGAAAAAG
AGAGGCGACAAGATTGCCGGCAGGCTCGACCTAGCCGTTAAGAAGGAAAGAAAATGGGCTTACTGGGCAGACCCATGTGG
GCTCGCATAGGCGACGCGAACGCTATATGCTGCTGAAAGCGCTATATTGCATTTGCGCATGCTATACATG-GCACACAGC
ATGTCAACCATTTTGTTTTCGAATCATCAGTCAGTCA-----------------TCGTCCTAGCCAGCGGCCCACCCAAG
GCCCCGGACGCAACCCACCAAAACTAGGGCTTTGCACAGGGTTTAGCGGTGATCTCTCCCCCTCTTCCTCTCGTCGACGC
GCATCCATGGCGGCCGCCA---CCTCCTCCCTCCTCGGCCGCCGCCTCCTCCTCCTC---TCCCGTCGCTTCGTCTCTTC
TCCTCTCCGCCCCTTGTCAACCACCGGGCCCCCGTCCTCACACTCGGCCGCGGGATCCGATGTCGAGCCCGACCCTGAGC
CACCCGCCGATCAGGGTAATCAGTACCGGAGCCAGCCGAGGCCTCCCATCACCACCCGCCCCCTCGAGAATGGCCTCGAC
CACGGCATCTACAAGGTTTTATGGAACCCTTGGTTCTCTTCTCCGTTTGGACTTG-TTTGGTGATAGCCGAAATGTGATG
TGCGCTTTTTGTTTTGGTGGATTCGCGAAGGCTATAATGGTGGGAAAGGTGGGTCAAGAGCCTGTGCAGAAGCGGCTGCG
GAGTGGGAAGACCGTCGTGCTGTTCTCTCTGGGCACCGGCGGTATCCGCAACAACCGCCGCCCGTTGGACAACGAGGAGC
CGCACCAGTACGCGGAACGCAGCTCCGTGCAGTGGCACCGCGTATGCATCTACCCGGACAGGCTGGGTAGCCTCGCGCTG
AAGCATGTCAAGACCGGGTCAGCGCCTTTGCCTTGCCCCGAGCTT-GCGTTGTTTAGATTTTCCTTTTGTTGGATGCAAT
TTTGACCTGCATCAGTTTAGAGGTAGCGAGATGTTTGAGCGCGTCAGTCTCAGCTTTGCTAACTCGGATCATGCTGCCCA
AACCGCTTGCTAATTCAGCTTTGTGAAATACTCGCTCCATTCATAAATATAGGACGTTTTTAACTTTTTTGTGAGTGAAT
CGGATGTATATAGACACATTTTAGTGTGTTTGTTCACTCATTTCATTCCGTAGTATGTAGTCCATATTGAAATATCAAAA
ACATCTTCTATTTGTGAACGGAGGAGTATTATGTAAACAGGCATTCTTAAGTCCTCTATTGTCGTTTTAAAGCCTGTTCA
TTTGTTCATCCTTCCAACCACTCATTCACCTAGATTGCGAAATCTGAGTACTTGATTCTCTTGGTGAATAATTGAGTATG
GACCATTTACCTTTTACTAGGCTCCATTTAGTGGAAGTTAGAGAACACTGTTATTCAGTTCCGGTGGATTGGTTATCTTA
GTTGTAGTTGGAAACTGAATATGCGTCCTGTTGGTTGTAGATTTGAAGTTGCATATTGGCCAAGTGGCAACATGGTCACT
GTAGTTTGAGCTTTATGCTGTCCCCTTTGTGTTTCTTCTTCCTTTTATTGATTGACTTCAATTATACCTCTAAATGTTGA
TCAGTTGCAACATTTCAGATCTGTTCTCTATTTGGAAGGAAATATTGAGACAAAGGTGTTCTCCGATCCTATAACTGGGC
TCGTTAGACGCATAAGAGAAATAGCTGTTCGAGGAAATGGTATGTTTCTTTATTAGATATCACGTAATCAGCTTC-TTTT
TTGTTCATACCTCCGTTATTTGTTTTCAGCCTTGTCTTAGAACCTGAAGTTTTTATGTTACAGGAAAAATCTTCAGTTCT
AAATTTTACTCGGGGAAACTTGTTAAATATTACAGGCTAAATGCCACCATTAGTAATTTTGTTATTTTTCTAAATGTTTC
TTGTTACAAACTTTGCTTTAAGGGCAGCATATTGAATAATCATTGTTTTGTTATTCAGGATAACGGCTAGCTGCTGACTT
CCATTTCCTTCCCCCACTTTTGTTCTGAACAAAAAGATTTGCCATCTCATCCTATGTTAATGTAACCACATACAGTGCTG
TAGTGAAGAAAAAACATAGCAAAGACATTTCTGAAGCCCCATGAATGAAATCTCTTGTAATCAAAAAGTTTTCTGCATTC
CCACTATCTGGGTTTGGTATCATCTTCAGGCTGATTCACAACTGCACAAGCAGAGTACTACTAGCTACTCTGCCTCAAAC
CTATATAACAGCCATCTTCAGTTCATGGGGCATCTCCTCCTTAACCCATACTTCCCAATGTTTCAAACGGACTTATGAGG
CTGTTGCGAACTGTGTTCTACATGTAATGTGTTGTTGTCTAAACACTTAATGTGTTCAGGAGTCTAGATTGTACACTGAA
ATACCAACTGCATAAGCACTTGCATATTGTGTAGGAGTTTGAACCTTCATCTTCTACATTTTCACTTTAGATCACATTTT
CTTCTGCATTTTAACATAAAAAGTAG----TTGATTGTAATTTGTTTTCTGTCAATCAAAACATCAAGGCGTTGCTAAAT
AGAGCTGTATTGATTTCGTCTCTTGAACTACTAATTGTAGCATGATAAAACTCTGTTGTTTGTGATTTTCCACACCAAAG
CTTAGACTCCGCTTGTGTTTTTTCCATACATTATTGGGTTAGGCTCTATCCTACTCCCTCCGTCCCGAATTACTTGTCGC
GGTTCAGGACGGAGGGAGTTT----CTACTGCAGGGTTCTAACTATTTACCCATGTGACAACACAATTATTTTATTCAGA
ACAACTCTTGATCTAGTCCACTCTAAAATCATCAAAACACCATTTAATACTTTCAGATAAAGAACAACTAACCATATAAA
TGTTCCATAGCCGGCTTCAGCGTTGTCCCTTAATTTACTCATTTTGGTTCGTGACAAAGTTTATGTAGTATACCAATTGT
CTCATTAATGATGTCCTCATGTCCCTTGTAGTCACATTGATAAGCTGATTTTCTGTGCTGGTTTTTTTATGCTCAG-TTT
CAACATATGAATTAAAAGTTGCATGGCATTTG-AATTATGTTAAGCATTGTGATTTATGCTCAGTTTCAACGTACGAATT
AAAGTTACATGGCATTTGGAATTATGTTCAGCTTTGCGACCGTGTTTAGGTTTTGGTAGAATATGATAAA-GTTGTTTCT
TACAAACAGGTCGGTTCCTGTTTCTTGGTAACGATGGCAATGGCCCCAAGATAGGTGAAGTGAAGGGCGTTGGGTACTTC
TGAAAGTGAGGTCCAACAAAATCCATTTGAGAAGTGAGACTGAGGTACTGCACGTGTGCTACACTTTGGAGTATTGTCAA
CATCTTAGCATTGGACAAATAATGGCATGTTTTTGCCGCAGTTTGTTAGTTTCCCCTTGCCTAGTCACATTCCTGTCTTC
ATTAAGCTTTCGACGCCATTGTAGATGCCATGTACTCCCTCTGTTCCAAATTACTCGTCGCAGAAATGGATGTATCTAGA
ACTAAAATACATCTAGATACATCCATACCTGCGACAAGTAATTCGGAACGGAGGGAGTAATTGACAAGTGTCTGACTTGT
ACGCTTTAACTCTGGTTGGAGTACAATGCATGCTCTTATGGAGAGAATTTAATCTCCCACTATGTACTCCCTCTGTAAAG
AAATATAAGAGCGTTTAGATCACTATTTTAGTGATCTAAACGCTCTTATATTTCTTTATGGAGGGAGTACTTTTTACAGT
TACTTTCTTGCTGTGTTTCTCCCTTTTTTGGCCACAGATGTT---GGGTACTTCAGGATTAAGCTAGTGCGATA-CAATA
AGATTGAAAATATACATTAGGACGAATAATTTACGCTGCTAATCCGTGCATCCATAAATATACTTCCTCTGTCCTCAAAT
AAGTATAGAAATTTTAAGACGAATTTTGGAATGGAGTAGAAAATGCATTGGAAAGGTGCAAGCTACTATCTCTCTCCTCT
CTAATTTCCTCCCACCTTCAATGAGCTAAGCGTATGTAGAAAATGAGATCATGTGTTAAGGGCCAGTTCTTTTGTCGGCT
TATTTTCCCAGCTTTTCCCATAAGCCGCCTCTCATTTATTGAGGCTTCTGAACTAGTTATGGGATTACTAATGAGCCTCA
ACAAATTTTAGGAGCGGCTTATTTTTTAAGCTGGGGCGAGGCAGCTTATTTTTTAAGCCGCCTAAAAGAACTGGCCCAAA
TGTTATTGGGCTTGATTCCTGTGTGATGAGAGAGAATTATTATTTTTCTACTTTAAAATGCGTTGAGAAGATAGAAGCAT
TCTTTTGTGGACAAATTTCAAATGCTAAATGTTCACTTATTTGAGGACAGAGGAGTACATTAGCACCAATAATTACATTT
ATATACCCTTAATTTTAAGTACTCCCTCTATCCATAAATAGTACTCCCTCTGTCCCAAAATTCTTGTCTTACATTTGTCT
AGATACGGATGTATGTAACACTAAAAAGTAATTAGGTACATCCGTATTAGGCAAATATAAGACAAGAATTTTAGGACGGA
GGGAGTATTTATGGTATATTGTGAGATTTATGTTGACCATGATAAAATCGATAATCTGTGAGATGAATGCTAGAAAAATC
ACACTATTGGAAACTCCTTTCGAATATGAATTCGATGGCCAATAGGGCATATCGGAGACCGAGATCTATGGAGGCCTTTA
TTTGAAAAATTCAAAACCAAACTTTCAGTTTCAAAAAATTCTGAAAACAAATACACATGTATACAAGGATGTAATCTGTC
TGTAAAATTTGAGGATGAACTACCTTGAATTGCG
>SNPs
--------SSSS-SSSSS--S-S-SSSSSS-SSSSS-SSSSSSS--SSS-SSS---SSSSSS-SSSSSSSS-SSSS--S-
SSS-S--S-SS-SSSSSSSSSSS-SSSSSSSSSS-SSSSS-SS-S-SSS-S-S-SSS-S-SSSSS-SS-S-SSSS-S-SS
SS--SS-SSS--SSSSSS-SSSS-SSSSSS--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------SS--------
--------S-------------------------------S-S-------------------SSS-S-SSSSSSSS----
--------------------------------------------S------------------------------S----
---S---S--S--------------SSSSS-S-------------S---SS--------------SS-SSSS--S-----
-----------------------S--------------------SSS-S--S--S-------------------------
--------------------------------------------------S--------------------S--------
-----------S------------S----S----------------S---------------------------------
-------------------------------S------------------------------------------S-----
--------S------------------------S----------------------------------------------
---------------------S--------------S-------------------------------S-------S---
-------------------------------------SSSSSSSSSSSSSSSSS-----------S----------S--S
------------------S-------------------------------------------------------------
---------------------------------------------------------SSS---------------S----
----------S---------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------------------------------------------------------S-S-------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
-------------------------------------S---S-----------------S--------------------
------------------------------------------------------------------------S-------
----S------------------S------------------------------S-------------------------
S---------------------------------------------------------------------------S---
--------------------------------------------S-------------S---------------------
----------------S---------------------S-----------------------------------------
--------------------------S-----------------S-----------------------------------
S-------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---SS----
-S--SS--------S-----------------------------------------------------------------
------------------------------------S-------------------------------------------
------------------------S-------------------------------------------------------
-S-------------------------------------------------S-------S--------------------
-------------------S---S------S---------------------S--------------S------------
--------------------------------------------------------------------------S-----
------------------------------------------S-S-----------------------------------
------------------------------------------------------------------------S-------
----------------------------S-----S---------------------------------------------
--------------------------SSS-------------------S-------S----------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
---------S-------------------------------------------------S--------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
----------------S----S------------------------------------------------------S---
-----------------S--------------------------------------------------------------
------------------------------------S-------------------------------------------
-------------------------------------S------------------------------------------
-------SS---------S-------------------------------S-----------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----SS------------------------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-----------------S----------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S-------------------S------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------SSS-------S--------------
-S----------------------------------S-----------------------S-----S-------------
--------------------------------------------------------------------------------
-------------------S--------------
>forward_93
-------------------------------------------------------------------------CACTTTT
GCGTACCGTGGTT-------------------------------------------------------------------
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>reverse_3101
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------------------------------------------------------------CGAGAGCCGAAATGTGATGT
G-------------------------------------------------------------------------------
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>forward_119
--------------------------------------------------------------------------------
-------------------TGACTGAATCCGCACAGACA-----------------------------------------
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>reverse_3145
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------------------------ACGAAGGCTATAATGGTGGGA-----------------------------------
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>forward_187
--------------------------------------------------------------------------------
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-------CCCTTGTCCTCACACTGTCA-----------------------------------------------------
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>reverse_3777
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----------------GCCACTCATTCACCTAGATTGC------------------------------------------
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>forward_3525
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-----------------------------------------------------------------GGATCATACCGCCCA
AACCC---------------------------------------------------------------------------
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>reverse_5457
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----------------ACATGCCCCTTGTAGTCACA--------------------------------------------
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>forward_4763
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-----------------------CATGGGGCATCTCCTCCTTG-------------------------------------
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>reverse_5718
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-------------------------------------GAATGGCCCCAAGATAGGTGA----------------------
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>forward_4765
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-------------------------TGGGGCATCTCCTCCTTGAT-----------------------------------
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>reverse_5932
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-----------AACGCCATTGTAGATGCCATG------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------
