>input_sequence_23652
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-------------------------------------------------------------------------ATGGATC
TGTCCACAACCTCTGTTATGGCGGCTAAGGCCTACTCGTACAAAGCAGAGTCACTGGTTAAGGAATACCTTCTTGCAGAT
GCATATGTTTCGTACACTGCTATGCTTGGTGGGATCCTGATGTGCAAGATGGTATTATT-TGCTCCCCTCTTATTTGTTG
ACATTTATGATCATGTCACCTGTGAATTTAGTGATGCTCACATGATTCATGTATTTAGATGGAAGAAACAAATAGATGTT
AGTTTT--TGCATTTTTGCTTAACTTCACTATGTGAAAATTGTGGACTACCGAACACCATTTGTACTATATACTCCCTCC
GTTCCTAAATATAAGTATTTGTAGAGATTTCACTACGGACTACATACGGAGCAAAATGAGTGAATGTAAACTTTAAATGC
ATCTATATACATCCGTATGTGCTTCATAGTGGATTCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTATATGGCTAT
TAGTATAAGCAGGTTTCTGTAAAGATCTAATGTAGGATATGCAAATTCTCAGTTTAGCCTGAGAGGCTGAGATCTAATTA
GGAATATGTCGATGGCTACCCACCACATCCGATCCTAATCCGCGTATGCATCTGAAATCAGTTGAAGTTATGTAAGTTTT
AAACTCACATGCAAGCTGTGATGAATTTTCAGATTAGAGTCATGAAATAGATTTAAAAGTTTGTTTT-GCTTGTAACGTT
TTTGTTTTTGTTTAGTATGAGCAGTTAAGTTCTTCAGTAAAATTTGGATACTCAATACAAGATTTTCAAAACCAAGCATG
TTACAGTTTAGCTAACAAAAATCAACCTAATCCTATCAATA---TAATAACCATTTTTTAATCAATATTTGGCTACCATG
GGAAACAGAAGTTGAATCAAAATGTATATATGTTTTTAATCTGTATTATACAGGTTGACCTCAGTGTATTTCCATATATA
TGTAATATTGCAATAATTTCCTTTTATTTGCCCTTTGTGTGTGCCTGTGTATGCCAGGATCCCTTACAATACCTTGTGTA
CCATCTGTATCCTTTAGGCAATAGTGG---TATGTGTATGTAGTAAGTTATTAACTATTCTGCGA---------------
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-----------TG---TAAAAAAGTAGATAGCAGCATGCAGATGATAATCATCAGTTCTACCATTGTTTTCAGAGTTTGA
CTTTTCAAAACCCTTTGCACTCACTCACTCACACTACCACCTATGAGTTTCTCTTGTTTTATTTTACATTTATGTTAACC
CTGAAATTCTTGCATGGAACAAGTTATGATTGATCTCAGTGTACCAGAACTCTAGTTACTTTCTTGGCTACAAATTCCCT
TTTGGTTTGCAGGTCTATGACATCACACACTTAGTCAGCTCATTCTTCTACAAGTGTTATGCTTCTCTTACAAAAGCCCA
AAAGCTTGAGTGGAACAACAGGTGAAGCCTTCTGTCTGCAAAATTTATGTCCAATTTCACCCTGTGCTTATTGACATATC
TACTTA-GACCGATCTTTTACCTATTCTAGGGGCATCTCCACTGTCCATGCAATTTTCATCACATTCATGTCAGTGTACC
TAGTATTCTTCTCCGACCTATACTCTGATAAGCTGGATGGACCAGTAACTTTCCGGAGTTCAAACCTCTCTAATATTACA
CTAGCGGTAAAGTACTACTATTTTGTTCCCATTCAAGAAATGCCTATGTTGGCATGCATTTTCTATTTGCCTCATATCGG
CCTAATTTCATTTGTCCAGGTATCTGTTGGGTACTTCATCACTGACATTGCTATGATATTTTGGGTTTATCCTTCCCTAG
GTGGAATGGAGTATGTAAGTGCCCTTATGTGATATTTCT--------TCCTTGACACACGT--TAATATTCATTGTATTT
GTTCAATTGTCGTTGCTGCATTTTTG---------------TATTCACTATGGGTTGACCATTGCCAGGTTCTTCATCAC
TTCCTGTCACTTGTTTCCATAGTCTATTCTGTGAATTCTGGGGAAGGCCAGTTGTATACATACATGGTTCTCATCTCTGA
AGGAACCACACCTGGAATTAACCTCCGCTGGTATTTGCTTTGATTCAATGAATGCACAATATTTCTGGGTCATTATTGTT
ATTTCATTCGGTCTGATCTTTCCGGTTACCTTCTGTTATGAAGGTATCTTGATACTGCTGGACTGAAAAGATCCAAGGCC
TATGTTGTGAACGGTAGCTTTATGGTTGTTGCATGGCTGGTAAGTGGAAGTTTCTACAAAGTAGTTATAGGATTCACGGT
A--TTTCACGCAACTGATCACAAGTTAATTAGTCTTCACTCTTCAGTATGCCTCAATGTGTGCATACATGAATGAACATT
TCAAATTGTATAGCCAGATCAAAACAATTATTTTGTTATGTGAATTTGCTTCAAGCTAAGGTTTGTCTACTCCTTTATAC
ACTCTATTCCACTATGCCCTTTTTAAAATTACAGCTAGTGGAATACCTCAAGCTTCTTTATAATAGATGAAGTCTTTTAT
TGTGTTTGTGTTCTTCATAACTCACATCGGACATTTGCTAACTCGTCTTGGGGACTGGGATACAGTATTAGCAATTGGTC
TTGTGATTTTAGAGAAACTTATCGTACAAGTTGAAATATTAATGCTATTGTACCCCCAGATGTTTCTGTGCCGAGGCCAT
ACTGTAATTT-AGTTTAACAATGCTCTCTTCAGTAGGTTTTCCCTAGGTTGTTTGGCTTTGTCTTCGGTTTCTGTTTCTT
GCTAGGCCCTTGGTGTGTAACTGTTTCTGCTTCCGTTT----TTTTTTCTTTTGGCTTGCTTTACTTTGGTCTTGTTTTA
CC-----------------------------------------------------------ACAATTTTCTCTCTAACGT
AGTCAACCATTTGTGTAATACAGGTGGCACGGATAATTCTATTCATCTACTTGTTCTACCACATCTACTTCCACTATGAT
GACGTAATTCCTACTTGTGTGACAGCATGTAACTATGTGACAAATATCACATCGATGACTCTGAAACTAAATTTGATCTG
AATTATTGACAGGTGATGCAGATGCGGACCTTCAGCCGCGTTCTGATATTTGGCGTGCCCACAATACTACTCATCATGAA
CACGATATGGTTTGCAAAGATCTTGAGAGGCCTTAAAAAGACGCTAACTAAGAGGGAGTGA-------------------
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-------------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G337900
GTTTCGGTTATTATCGGTCGCGCGCGGCGGCGTGCCT----TCCTGGACTCGGGGCT-GTTTCCTTTTGATCGCTCTGGT
GTTTTCTTCCGGGCGACGGTGCGTGCCATTGTCGTCCGGGCATCGATTCCGTGCCCCAATTGGTCGCAACGTGCGGATGT
TTTCCG--CCGAGCTGGCGGTTTGAGTGACGCCGCAAAAGGTTGCCCCTCTTGCGCACCTTTTCTGACCCCCATCCCT--
------TCTTGATTCCTTCGTGCGCTTTGTGCGTTGCCTTATTTAGTCAGGTTTATGGACGTACCTTCTCCGTGTTACTT
ATCCTCGAGTACTATTTTCGTGCGAGTTGTTGCGCGTGATTACAGGTGCCACACGCTGTTATGAGTTGTTTTGGATTCGA
TACATTCTCCAATATAGT------------ACCTGAATTTTAGTGTTTAGAGGGATGGCTGTCAAGCATGCAATTAGCTG
CTATCGTTTTGGATTCGTAGCTGGCTCCATGTTGACGGGGACCTCAACCATTATCTTACTTAAACTGTGGCTCTAGCAAT
TGTTAATAGGATCCATTCATTGGCTTCGGCAGTACGCTGTTGCTTTATTCACAGCTTCCAGTCTTTCAGTATAGAGTATA
GAGTATAGACTCAATCTCTGGTGCATGCTTCTGCTTGCTATTTTATTCTAGTGAAAGTGACACATGACAGGGATTGATTA
TTTATTTGGCTTCAGTGTCGCATTTTAAGACATGGATGGCTTCTTCATGTGGTCGGGTTCGTCTACTTTACCATTATGCA
TTCAAGTGACAGTTGGGTGTTGTACTTCATGGAA-----GATTATTCCGAGTACTGTTTAGCAATGACCCATATCTT-GG
TTGTTCTTCTACGGTCAACTGGATGTCACACAAAAACTATTTTTAATCTTAGCGTGGACATTTTATAATTCTGGCTTCTC
TATTGCTCAAAATGTACCTTGTTATGTGACTTTGTCTCTTTCATCAGGTTGCTGAGTCAAGATATAGGAATTGATGGATC
TGTCCACAACCTCTGTTATGGCGGCTAAGGCCTACTCGTACAAAGCAGAGTCACTGGTTAAGGAATACCTTCTTGCAGAT
GCATATGTTTCGTACACTGCTATGCTTGGTGGGATCCTGATGTGCAAGATGGTATTATT-TGCTCCCCTCTTATTTGTTG
ACATTTATGATCATGTCACCTGTGAATTTAGTGATGCTCACATGATTCATGTATTTAGATGGAAGAAACAAATAGATGTT
AGTTTT--TGCATTTTTGCTTAACTTCACTATGTGAAAATTGTGGACTACCGAACACCATTTGTACTATATACTCCCTCC
GTTCCTAAATATAAGTATTTGTAGAGATTTCACTACGGACTACATACGGAGCAAAATGAGTGAATGTAAACTTTAAATGC
ATCTATATACATCCGTATGTGCTTCATAGTGGATTCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTATATGGCTAT
TAGTATAAGCAGGTTTCTGTAAAGATCTAATGTAGGATATGCAAATTCTCAGTTTAGCCTGAGAGGCTGAGATCTAATTA
GGAATATGTCGATGGCTACCCACCACATCCGATCCTAATCCGCGTATGCATCTGAAATCAGTTGAAGTTATGTAAGTTTT
AAACTCACATGCAAGCTGTGATGAATTTTCAGATTAGAGTCATGAAATAGATTTAAAAGTTTGTTTT-GCTTGTAACGTT
TTTGTTTTTGTTTAGTATGAGCAGTTAAGTTCTTCAGTAAAATTTGGATACTCAATACAAGATTTTCAAAACCAAGCATG
TTACAGTTTAGCTAACAAAAATCAACCTAATCCTATCAATA---TAATAACCATTTTTTAATCAATATTTGGCTACCATG
GGAAACAGAAGTTGAATCAAAATGTATATATGTTTTTAATCTGTATTATACAGGTTGACCTCAGTGTATTTCCATATATA
TGTAATATTGCAATAATTTCCTTTTATTTGCCCTTTGTGTGTGCCTGTGTATGCCAGGATCCCTTACAATACCTTGTGTA
CCATCTGTATCCTTTAGGCAATAGTGG---TATGTGTATGTAGTAAGTTATTAACTATTCTGCGA---------------
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-----------TG---TAAAAAAGTAGATAGCAGCATGCAGATGATAATCATCAGTTCTACCATTGTTTTCAGAGTTTGA
CTTTTCAAAACCCTTTGCACTCACTCACTCACACTACCACCTATGAGTTTCTCTTGTTTTATTTTACATTTATGTTAACC
CTGAAATTCTTGCATGGAACAAGTTATGATTGATCTCAGTGTACCAGAACTCTAGTTACTTTCTTGGCTACAAATTCCCT
TTTGGTTTGCAGGTCTATGACATCACACACTTAGTCAGCTCATTCTTCTACAAGTGTTATGCTTCTCTTACAAAAGCCCA
AAAGCTTGAGTGGAACAACAGGTGAAGCCTTCTGTCTGCAAAATTTATGTCCAATTTCACCCTGTGCTTATTGACATATC
TACTTA-GACCGATCTTTTACCTATTCTAGGGGCATCTCCACTGTCCATGCAATTTTCATCACATTCATGTCAGTGTACC
TAGTATTCTTCTCCGACCTATACTCTGATAAGCTGGATGGACCAGTAACTTTCCGGAGTTCAAACCTCTCTAATATTACA
CTAGCGGTAAAGTACTACTATTTTGTTCCCATTCAAGAAATGCCTATGTTGGCATGCATTTTCTATTTGCCTCATATCGG
CCTAATTTCATTTGTCCAGGTATCTGTTGGGTACTTCATCACTGACATTGCTATGATATTTTGGGTTTATCCTTCCCTAG
GTGGAATGGAGTATGTAAGTGCCCTTATGTGATATTTCT--------TCCTTGACACACGT--TAATATTCATTGTATTT
GTTCAATTGTCGTTGCTGCATTTTTG---------------TATTCACTATGGGTTGACCATTGCCAGGTTCTTCATCAC
TTCCTGTCACTTGTTTCCATAGTCTATTCTGTGAATTCTGGGGAAGGCCAGTTGTATACATACATGGTTCTCATCTCTGA
AGGAACCACACCTGGAATTAACCTCCGCTGGTATTTGCTTTGATTCAATGAATGCACAATATTTCTGGGTCATTATTGTT
ATTTCATTCGGTCTGATCTTTCCGGTTACCTTCTGTTATGAAGGTATCTTGATACTGCTGGACTGAAAAGATCCAAGGCC
TATGTTGTGAACGGTAGCTTTATGGTTGTTGCATGGCTGGTAAGTGGAAGTTTCTACAAAGTAGTTATAGGATTCACGGT
A--TTTCACGCAACTGATCACAAGTTAATTAGTCTTCACTCTTCAGTATGCCTCAATGTGTGCATACATGAATGAACATT
TCAAATTGTATAGCCAGATCAAAACAATTATTTTGTTATGTGAATTTGCTTCAAGCTAAGGTTTGTCTACTCCTTTATAC
ACTCTATTCCACTATGCCCTTTTTAAAATTACAGCTAGTGGAATACCTCAAGCTTCTTTATAATAGATGAAGTCTTTTAT
TGTGTTTGTGTTCTTCATAACTCACATCGGACATTTGCTAACTCGTCTTGGGGACTGGGATACAGTATTAGCAATTGGTC
TTGTGATTTTAGAGAAACTTATCGTACAAGTTGAAATATTAATGCTATTGTACCCCCAGATGTTTCTGTGCCGAGGCCAT
ACTGTAATTT-AGTTTAACAATGCTCTCTTCAGTAGGTTTTCCCTAGGTTGTTTGGCTTTGTCTTCGGTTTCTGTTTCTT
GCTAGGCCCTTGGTGTGTAACTGTTTCTGCTTCCGTTT----TTTTTTCTTTTGGCTTGCTTTACTTTGGTCTTGTTTTA
CC-----------------------------------------------------------ACAATTTTCTCTCTAACGT
AGTCAACCATTTGTGTAATACAGGTGGCACGGATAATTCTATTCATCTACTTGTTCTACCACATCTACTTCCACTATGAT
GACGTAATTCCTACTTGTGTGACAGCATGTAACTATGTGACAAATATCACATCGATGACTCTGAAACTAAATTTGATCTG
AATTATTGACAGGTGATGCAGATGCGGACCTTCAGCCGCGTTCTGATATTTGGCGTGCCCACAATACTACTCATCATGAA
CACGATATGGTTTGCAAAGATCTTGAGAGGCCTTAAAAAGACGCTAACTAAGAGGGAGTGAGGAGGAGAAGAATAGCAGA
TGCAAGCTCATGGCAGCCCATCTACAAAAAC-ATCATCCTGCCTTACAGTCACATAAAATTACATATACTCCCCGAGTAA
AACTAGATAGTGCGACTCGCAGCACAAGCTAAAACCCCATGTACATAATCCAGAAGTATGCTTGAGCACGGCCTCAAATT
TTCCACGGATATTCTCCGTCTTGTACATATACCGGTCTGGATATTGCTTAGGAAGCTTCAAACTGCGTGTGCATTGGGTG
CTTCTAAGCCTCCGTCGACCACTGACACTGAGATAGTCGTTGGTCATCAAAAGTGACCTTTGAAAGGTTGAAATCTGGCA
TCTGCTTCTAGTTACGAC---TTACGACTCTGAATGTG----AAGACGGTATTCTTCTTGACTTTCAGAATCTGAATTGT
AGTGGTTCGTTCTCTTATCATTGCAAGTAAACCCTGTTCAATCTTGGTGCGTG------GCTCTGTAGCCAACTGCTTGT
GATCACTACCATGTGTGACGCACATGACCCCCTTTGATCTGTTTTCCATTTATAGTGCAAAAAA--GTGTCTGATTACAA
CAAGGAGCGTAAAGCACAACCTGTCTGGAACGCAGGAGAGCTGCTCCAGGGGTTTATGTTTGACGCGTGCAGTTCTTCGT
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--------------------------------------------------------------------------ATGATA
AAGAAATGATGATTA-TTCTTTTCTTTTGCGATGAGCAGATGATTATTCTGCATACAAAGTGCACATAACTTTCACTTGC
TGCATTGCATTCAGCTCATGATCAGCTGTGGTATATATTG--------------------------GTGTGTGTGTGTTA
CGTGAGGCTGCGGCTAAGTAGGCCCTGAAATGAGAGGAGGAGGTCCTTGTTTTCTGCGCCGAAGATCTGGTCCGCCTTCT
CGAGGGTCTCCTGCACCACCACAC---CAATATAGTAC------ACCTCAAGATCTGTATCCGAAAGAAACCACGGATCC
AGCTGGAAACTGAAAGTGAGG------------GTTACCTCTTGGGATTGCCTGTGAGCGTTCAGCTCCTTGATGTTGG
>chr3A_1
GTTTCGGTTATTATCGGTCGCGCGCGGCGGCGTGCCTGCCTTCCGGGACTCGGGGCT-GTTTCCTTTTGATCGCTGTGGT
GTTTTCTTCCGGGCGACGGCGCGTGCCATTGTCGTCCGGGCATCGATTCGGTGCCCCAATTGGTCGCAACGTGCGGATGT
TTTTT--TCCGAGCTGGCGGTTTGAATGACGCCTCAAAAGGTTGCCCCTCTTGCGCACCTTTTCCGACCCCCATCCCCTG
TATTCATCTTGACTCCTTCGTGCGCTTTGTGCGTTGCCTTATTTAGTCAGGTTTGTGGACGTATCTTCTCCGTGTTACTC
ATCTTCGAGTACCATTTTCCTGCGAGTTG-TGCGCGTGATTACAAGTGCCACACGCTGTTATGAGTTGTTTTGGATTCGA
TACATTCTCCAATATAGT------------ACCTGAATTTTAGTGTTTAGAGGGATGGCTGTCAAGCATGCAATTAGCTG
CTATCGTTTTGGATTCGTAGCTGTTTAT--------GGGGACCTCAATGACTATCTTACTTAAACTGTGGCTCTAGCAAT
TGTTAATAGGATCCATTCATTGGCTTCGGCACTACGTCGTTGCTTTATTCACAGCTTCCAGTCTTCCAGTATAGAGTA--
-----TAGACTCAATCTTTGGTGCATGCTTCTGCTTGCTATTTTATTCTGGTGAAAGTGACACATGACAGGGATTGATTA
TTTATTTGGCTTCA------------------------GCTTCTTCATGTGGTCGGATTCGTGTACTTTACCATTATGCA
TTCAAGTGACAGTTGGGTGTTGTACTTCATGGAATGGAAGACTATTCCGAGTACTGTTTAGCAATGACCCATATCTT-GG
TTCTTCTTCTACGGTCAACTGGATGTCACA--AAAACTATCTTTAATCTTAGCGTGGGCATTTTATAATTCTGGCTTCTC
TATGGCTCAAAATGTACCTTGTTATGTGACTT-GTCTCTTTCGTCAGGCTGCTGAGTCAAGATATAGGAATTGATGGATC
TGTCCACAACCTCTGTTATGGCGGCTAAGGCCTACTCGTACAAAGCAGAGTCACTGGTTAAGGAATACCTTCTTGCAGAT
GCATATGTTTCGTACACTGCTATGCTTGGTGGGATCCTGATGTGCAAGATGGTATTATTTTGCCCCCCTCTTATTTGTTG
ACATTTACGATCATGTCACCAGTGAATTTAGTGATGCTCACATGATTCATGTATTTAGATGGAAGAAACAAATAGATGTT
AGTTTTATTGCATTTTTGCTTAACTTCACTATGTGAAAATTGTGGACTACCGAACACCATTTGTACTATATA--------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------T--GGCTGT
TAGTATAAGCAGGTTTCTGTAAAGAACTAATGTAGGAT-TGCAAATTCTCAGTTTAGCCTGAGA--------TCTAATTA
GGAATATGTCGATGGCTACCCACCACATCCGATCCTAAGCCGCGGATGCATCTGAAATCGGTTGAAGTAATGTAAGGTTT
AAACTCACATACAAGCTGTGATGAATTTTCAGATTAGAGTCATGCAATAGATTTAACAGTTTGTTTTGGCTTGTAACGTT
TTTGTTTTTGTTTAGTATGAGCAGTTAA-------------ATTCGGATACTCAATACAAGATTTTCAAAACCAAGCATG
TTACGGTTTAGCAAACAAAAATTAACCTAATCCTATCAATA---TATTAACCATTT-TTAATCAATATTTGGCTACCATG
GGAAACAGAAGTTGAATCACAATGTATATTTGTTTTTAATCTGTATTATACAGGTTGGCCTCAGTGTATTACCATATATG
TTTAATACCGCAATAATTTCCTATTATTTGCCCTTTGTGTGTGTCTGTGTATGCCAGGATCCCTTACAATACCTTGTGTA
CCATTTGTATCCTTTAGGCAATAGTGG---TATGTATATGTAGTAAGTTATTAACTATTCTGCGAGAATGGCGTTTTGGC
TTTCGGCCTCCAAGGAGGCCGATTTAAAAAAAATCAAAAAATTACGTATGTGCGACGTATGTGCGTAAATTTTTTTTGTA
CAAGTAAACAAGGATGTGAAACGTATGTGCGTAAAATTTCAGGATGAAATACGTTGAAAAGCGACCTGTACAAAAAAGAC
AAATTCATGGTCTGAGAAGATGAATAGTACCATGTTTAAAAAGCCCCAGATTTGTCTTCTTTGCACAGCCCTCATTTCAA
CGTATTTCATCCTGAAAATTTACACACTTGTGCACTATGCCTTCATCTATCTCTGTATTGTTTTCAAATTTTTTTGAAAT
GTAAAAATATGAATTTTCATGATTTTTGAATTTTGCATTTGGAGGCCTCCATGGAGCTCGGCCTCCAAAAGCAATTTTCA
CTATTCTGCGATG---TAACAAAGTAGATAGCAGCATGCAGATGATAATCATCACTTCTAGCATTGTTTTCAGAGTTTGA
CTTTTCAAAACCCTTTGCACTATCCACACTGCA-----ACCTATGATTTTCTCTTGTTTTATTTTACATTTATGTTAACC
CTGAAATTCTTGCATGGAACAAGTTATGATTGATCTCTATGTACCAGAACTCTAGCTACTTTCTTGGCTACAAATTTCCT
TTTGGTTTGCAGATCTATGACATCACACACTTAGTCAGTTCATTCTTCTACAAGTGTTATGCTTCTCTTACAAAAGCCCA
AAAGCTTGAGTGGAACAACAGGTGAAGCCATCTGTCTGCAAAATTTATGTCCAATTTCACCATGTGCTTATTGACATATC
TACTCACGACCGATCTTTTACCTATTCTAGGGGCATCTCCACTGTCCATGCAATTTTCATCACATTCATGTCAGTGTACC
TAGTATTCTTTTCCGACCTATACTCTGATAAGTTGGATGGACCAGTAACTTTCCGGAGTTCAAACCTCTCTAATATTACA
CTAGCGGTAAAG---TACTATTTTGTTCCCATTCAAGAAATGACTATGTTGGCATGCATTGTCTATTTGCCTCATATCGG
CTTAATTTCATTTGTCCAGGTATCTGTTGGGTACTTCATCACTGACATTGCAATGATATTTTGGGTTTATCCTTCTCTAG
GTGGAATGGAGTATGTAAGTGCCCTTATGTGATATTTCTGGGTTGCATCCTTGACACACGTGTTAATATTCATTGTATTT
GTTCAATTATCATTGCTGCATTTTTTGTATG-------TATTATTCATTACGGGTTGATCATTGCCAGGTTCTTCATCAC
TTCCTGTCACTTGTTTCCATAGTCTATTCTGTGAATTCTGGGGAAGGCCAGTTGTATACATACATGGTTCTCATCTCTGA
AGGAACCACACCTGGAATCAACCTCCGCTGGTATTTGATTTGATTCAATGAATGCACAATATTTCTGGGTCATTATTGTT
ATTTCATTCGATCTGATCTTTCCTGTTACCTTCTGTTATGAAGGTATCTTGATACTGCTGGACTGAAAAGATCCAAGGCC
TATGTTGTGAACGGTAGCTTAATGGTTGTTGCATGGCTGGTAAGTGGAAGTTTCTACAAAGTAGTTATAGAATGCACGTT
ATTTTTCACGCAACTGACCACAAGTTAATTAGTCCTCACTCTTCAGTATGCCTCAATGTGTGCATACATGAATGAGCATT
TCAAATTGTATACCCAGTTCAAAAAAATAATTTTGT----TGAATTTGCTTCAAGCTAAGGTTTGTCAACTGTTTTATAC
ACTCTATTCCACTATTCCCTTTTAAAAATTGCAGCTAGTGGAATACCTCAAGCTT---TGTAATAGATGGTTTTTTGTAT
TATGTTTGTGTTCTGTATAACTCACATTGGACATTTGCTAACTCGGCTTGGGGAATGGGATACAGTATTAGCAATTGGTC
TTGTGATTTAC-AGAAACTTATCGTACAAGTTGAAATATTAATGCTATTATACCCCCAGATGTTTCTGTGCCGAGGCCAT
GCTGTAATTTTAGTTTAACTATGCTCTCTTCAGTAGGTTATCCCTAGGTTCTTTGGTTTTGTCTTTGGTTTTTGTTTCTT
GCTAGGCCCTTG-TGTGTTCCTGTTTCTGATTCCA--T----TTTTTTCTTTTGGCTTGCTTTACTTTGGTCATGCTTTA
CC-----------------------------------------------------------ACAATTTTCTCTCTAACAT
AGTCAACCATTTGTGTAATACAGGTGGCACGGATAATTCTCTTCATCTACTTGTTCTACCACATCTACTTCCACTATGAT
GACGTAATTCCTACTTCTGTTCCAGCACATAACTATGTGGCAAATATCACATCGATGATTCTGACACTAAGTTTGATCTG
AATTATTGACAGGTGATGCAGATGCGGACCTTCAGCCGCGTTCTGATATTTGGCGTGCCCACAATACTACTCATCATGAA
CACGATATGGTTTGCAAAGATCTTGAGAGGCCTTAAAAAGACGCTAACCAAGAGGGAGTGAAGAGGAGAAGAATAGCAGA
TGCAAGCTCATGGCGGCCCATCTACAAAAACCATCATCCTGCCTTACAGTCACATAAAACTACATATACTCCCCGAGCAA
AACTAGATAGTGCGACTCGCAGCACAAGCTAAAATCCCATGTACATAATCCAGAAGTATGCTTGAGCACGGCCTCAAATT
TTCCACGGATATTCTCCGTCTTGTACATATACCGGTCTGGATATTGCTTAGGAAGCTTCAAACTGCATGTGCATTGGATG
CTTCTAAGCCCCCCTCGACCACTGACACTGAGATAGTCGTCGGTCATCAAAAGTGACATTTGAAAGGTTGAAATCTGGCA
TCTGTTTTTAGTTACGAC---TTACGACTCTCAGGAATGTGAAAGCTGGTATTGTTCTTGAC-TTCTGAATCTGAATTCT
AATGTTTCATTCTCTTATCATTGCAAGGAAACCCTGCTCAATCTTGGTGTGCAGCAGCAGCTCTGTAGCTGACTGTTTGT
GATCACTACCATGTGTGAC---------CCCCTTTGATCTTTTTTCTATTCATAGGGCAAAATC--GTGTCA-ATTACAA
CAAGGAGCGCAAAACACAACCTATCTGGATGGCAGAAGAGCTGCTC-----------------------CAGTTCTTTGT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GTGATG
AAGAAATGACGATTATTTCTTTACTTTTGCGATGAACAGATGATTATTCTGCATACAAAGTGCACATAATTTTCACTTTC
TGCATTGCATTCAGGTGGTATAAAATTGCCTGTGG-----------------------GTGTGTGTGTGTGTGTGTGTTA
CGTGAGGCTACGGCTAAGCAGGCCCTGAAATGAGAGGAGGAGGTCCTTGTTTTCTGCGCCGAAGATCTGGTCTGCCTTTT
CGAGGGTCTCCTGCACCACCACAC---CAATATAGTATAAGTATACCTCAAGATCTGTATCCGAAAGAAACCACAAATAC
AGCTGGAAACTGAAAGTGAGG------------GTTACCTCTTGGGATTGCCTGTGAGCGTTGAGCTCCTTGATGTTGG
>chr3D_11
----------TTATCGGTCGCGCGCGGCGGCGTGCCCCGAGTCCCGGAAGGCAGGCACGTTTCCTTTTGATCGCTGTGGT
GTTTTCTTCCGGGCGACGGCGCGTGCCATTGTCGTCCGGGCATCGATTCCGTGCCCCAATTGGTCGCAACGTGCGGATGT
TTTTTCTTCCGAGCTGGCGGTTTGAGTGATGCCACAAAAGGTTGCCCCTCTCGCGCACCTTTTCTGACCCCCATCCCT--
------TCTTGATTCCTTCGTGCGCTTTGTG---------------------TTATGGACGTATCTTCTCCGTGTTACTT
ATCTTCGAGTACTATTTTCCTGCAAGTTGTTGCGCGTAATTACAGGTGCCACACGCTGTTATGCGCTGTTTTGGATTCCA
TACATTCTCCAATACAGTACATGTCGCCCCACCTGAATTTTAGTGTTTAGAGGGATGGCTGTCAAGCATGCAATTAGCTG
CTATCGTTTTGGATTCGTAGCTGGCTCCATGTTGACGGGGACCTCAATGATTATCTTACTTAAACTGTGGCTCTAGCAAT
TGTTAATAGGATCCATTCATTGGCTTCGGCAGTACGTTGTTGCTTTATTCACAGCTTCCAGTCTTTCAGTATAGA-----
---------CTCAATCTTTGGTGCATGCTTCTGCTTGCTATTTTATTCTAGTGAAAGTGACACATGACAGGGATCGATTA
TTTATTTGGCTTCAGTGTCGCATTTTAAGACATGGATGGCCTCTTCATGTGGCCGGATTCGTGTACTTTACCATTATGCA
TTCAAGTGACAGTTGGGTGTTGTACTTCATGGAATGGAAGATTATTCCGAGTACTGTTTAGCAATGACCCATATCTTTGG
TTGTTCTTCTA-GGTCAACTGGATGTCACA--AAAACTATTTTTAATCTTAGCGTGGACATTTTATAATTCTGGCTTCTC
TATTGCTCAAAATGTACCTTGTCATGTGACTT-GTCTCTTTCATCAGGCTGCTGAGTCAAGATATAGGAATTGATGGATC
TGTCCACAACCTCTGTTATGGCGGCTAAGGCCTACTCGTACAAAGCAGAGTCACTGGTTAAGGAATACCTTCTTGCAGAT
GCATATGTTTCGTACACTGCTATGCTTGGTGGGATCCTGATGTGCAAGATGGTATTATT-TGCCCCCCTCTTATTTGTTG
ACATTTATGATCATGTCACCTGTGAATTTAGTGATGCTCACATGATTCATTTATTTAGATGGAAGAAACAAATAGATGTT
AGTTTTA---CATTTTTGCTTAACTTCACTATGTGAAAATTGTGGACTACCGAACACCATTTGTACTATATA--------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TATGGCTGT
TAGTATAAGCAGGTTTCTGTAAAGATCTAATGTAGGATATGCAAATTCTCAGTTTAGCCTGAGA--------TCTAATTA
GGAATATGTCGATGGCTACCCACCACATCCGATCCTAATCCGCGGATGCATCTGAAATCGGTTGAAGTTATGTAAGTTTT
AAACTCACATGCAAGCTGTGATGAATTTTCAGATTAGAGTCATGAAAAATATTTAACAGTTTGTTTTGGCTTGTAACGTT
TTTGTTTTTGTTTAGTATGAGCAGTTAAGTTCTTCAGTAAAATTCGGATACTCAATACAAGATTTTCAAACCCAAGCATG
TTACGGTTTAGCTAACAAAAATCAACCTAATCCTATCAATATAGTATTAACCATTT-TTAATCAATATTTGGCTACCATG
GGAAACATAAGATGAATCACAATGTAAATATGTTTTTAATCTGTATTATACAGGTTGACCTCAGTGTATTACCATATATG
TTTAATATTGCAATAATTTCCT-TTATTTGCCCTTTGTGTGTGTCTGTGTACACCAGGATCCCTTACAATACCTTGTGTA
CCATCTGTATCCTTTAGGCAATAGTGGTACTATGTATATGTAGTAAGTTATTAACTATGCTGCAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TGTACTAACAAAGTAGATAGCAGCATGCAGATGATAATCATCAGTTCTAGCATTGTTTTCAGAGTTTGA
CTTCTTAAAACCCTTTGCACTCACTCACCCACGCTACCACCTATGATTTTCTCTTGTTTTATTTTACATTTATGTTAACC
CTGAAATTCTTGCATGGAACAAGTTATGATTGATCTCTGTGTACCAGAACTCTAGCTACTTTCTTGGCTACAAATTTCCT
TTTGGTTTGCAGGTCTATGACATCACACACTTAGTCAGCTCATTCTTCTACAAGTGTTATGCTTCTCTTACAAAAGCCCA
AAAGCTTGAGTGGAACAACAGGTGAAGCCATCTGTCTGCAAAATTTATGTCCAATTTCACCCTGTGCTTATTGACATATC
TGCTCACGA-CGATCTTTTACCTATTCTAGGGGCATCTCCACTGTCCATGCAATTTTCATCACATTCATGTCAGTGTACC
TAGTATTCTTCTCCGACCTATACTCTGATAAGCTGGATGGACCAGTAACTTTCCGGAGTTCAAACCTCTCTAATATTACA
CTAGCGGTAAAG---TACTATTTTGTTCCCATTCAAGAAATGCCTATGTTGGCATGCATTTTCTATTTGCCTCATATCGG
CTTAATTTCATTTGTCCAGGTATCTGTCGGGTACTTCATCACTGACATTGCTATGATATTTTGGGTTTATCCTTCCCTAG
GTGGAATGGAGTATGTAAGTGCCCTTATGTGATATTTCTGGGTTGCATCCTTGACACACGTGTTAATGTTCATTGTATTT
GTTCAATTATCATTGCTGCATTTTTGTATGTATTATTCTATTATTCACTATGGGTTGACCGTTGCCAGGTTCTTCATCAC
TTCCTGTCACTTGTTTCCATAGTCTATTCTGTGAATTCTGGGGAAGGCCAGTTGTATACATACATGGTTCTTATCTCTGA
AGGAACCACACCTGGAATCAACCTCCGCTGGTATTTGATTTGATTCAATGAATGCACAATATTTCTGGGTCATTAATGTT
ATTTCATTCGATCTGATCTTTCCTGTTACCTTCTGTTATGAAGGTATCTTGATACTGCTGGACTGAAAAGATCCAAGGCC
TATGTTGTGAACGGTAGCTTTATGGTTGTTGCATGGCTGGTAAGTGGAAGTTTCTACAAAGTAGTTATATGATGCACGGT
A--TTTCACGCAACTGATCACAAGTTAATTAGTCTTCACTCTTCAGTATGCCTCAATGTGTGCATACATGAATGAGCATT
TTAAATTGTATAGCCAGATCAAAACAATTATTTTGTTATGTGAATTTGCTTCAAGCTAAGGTTTGTCTACTCCTTTATAC
ACTCTATTCCACTATGCCCTTTTTAAAATTGCAGCTAGTGGAATACCTCAAGCTTCTTTATAATAGATGAAGTCTTTTAT
TGTGTTTGTGTTCTTTATAACTCACACTGGACATTTGCTAACTCATCTTGGGGACTGGGATACAGTATTAGCAATTGGTC
TTGTGATTTTAGAGAAACTTATCGT-CAAGTTGAAATATTAATGCTATTGTACCCCC-GACGTTTCTGTGCCGAGGCCAT
GCTGTAATTTTAGTTTAAGTATGCTCTCTTCAGTAGGTTTTCCCTAGTTTCTTTGGCTTTGTCTTTGGTTTTTGTTTCTT
GCTAGGCCCTTGGTGTGTTCCTGTTTCCGCTTCCTTTTTTGCTTTTTTATTTTGGCTTGCTGTACTTTGGTCTTGTTTTG
GCTTCATGTCATCGACCTGTTGGCTTACTCAGCAAGCCCTTCTGCTGCTTGTGAAGTCTCTACAATTTTCTCTCTAACGT
AGTGAACCATTTTTCTAATACAGGTGGCACGGATAATTCTCTTCATCTACTTGTTCTACCACATCTACTTCCACTATGAT
GACGTAATTCGTACTCCTGTTCCAGCACATAACTATGTGGCAAATATCACATCGATGATTCTGAAACTAAATTTGATCTG
AATTATTGACAGGTGATGCAGATGCGGACCTTCAGCCGCGTTCTGATATTTGGCGTGCCCACAATACTACTCATCATGAA
CACGGTATGGTTTGCAAAAATCTTGAGAGGCCTTAAAAAGACGCTAACTAAGAGGGAGTGAAGAGGAGAAGAATAGCAGA
TGCAAGCTCATGGCCGCCCTTCTACAAAAACCATCATCCTGCCTTACAGTCACATAAAACTACATATACTCCCCGAGTAA
AACTAGATAGTGCGACTCGCAGCACAAGCTAAAATCCCATGTACATAATCCAGAAGTATGCTTGAGCACGGCCTCAAATT
TTCCACGGATATTCTCCGTCTTGTACATATACCGGTCTGGATATTGCTTAGGAAGCTTCAAACTGCGTGTGCATTGGATG
CTTCTAAGCCTCCCTCGACCACTGACACTGAGATAGTCGTTTGTCATCAAAAGTGACCTTTGAAAGGTTGAAATATGGCA
TCTGCTTTTAGTTACGACGACTTGCGACTCTGAATGTG----AAGCCGGTATTGTTCTTGGCTTTCAGAATCTGAATTGT
AGTGGTTCATTCTCTTATCATTGCAAGTAAACCCTGTTCAATCTTGGTGCGCA------GCTCTGTTAG-----------
-----------------------------CCCTTTGATCTGTTTTCCATTTATAGTGCAAAAAACAGTGTCTGATTACAA
TAAGGAGCGTAAAGCACAACCTATCTGGAACGCAGAAGAGCTGCTCCAGGATTTACGTTTTTACGCGTGCAGTTCTTCGT
ATGGTAAAGATTTTTTTTTTTCCAACCAGGCTCGCACCCCTTTCCATTAATTTTGCAATCAACGGAAATACATGGTCCAG
TAGTTCTCTAGGTATCATACCCAAAATAAAACGACCACGAGACCCAAAATAAGACTGAAAGGGGAGGAGCGAGCTGGAGC
ATCGACAGGAAACCCACCGCAGGAGGATCCTGAAACGGATCAACCGCCATGGGACGAAAACCTGACGACACCGTATGATA
AAGAAATGATGATTA-TTTTTTTCTTTTGCGATGAACAGATGATTATTCTGCATACAAAGTGCACATAATTTTCACTTGC
TGCATTGCATTCAGCTCATGATCAGCTGTGGTATATATTGGCGCAATAGCCAACAGGTGTGTGTGTGTGTGTGTGTGTTA
CGTGAGGCTACGGCTAAGCAGGCCCTGAAAGGAGAGGAGGAGGTCCTTGTTTTCTGCGCCGAAGATCTGGTCCGCCTTCT
CGAGGGTCTCCTGCACCACCACCACAGCAATATAGTATGGTGTTACCTCAAGATCTGTATCCGAAAGAAACCACGGATCG
AGCTGGAAACTGAAAGTGGGGTGCCCGTTCCCAGTTACCTCTTGGGATTGCCGGTGAGCGTTGAGCTCCTTGATGTTGG
>SNPs
--------------------------------------------S------------------------------S----
-------------------S------------------------------------------------------------
---SSS---------------------------S----------------------------------------------
---------------------------------------------------------------S----------------
---S---------------S------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
------------------------------------S-----------------------------------------SS
SSSSS------------S--------------------------------------------------------------
--------------------------------------------------------S-----S-----------------
--------------------------------------------------------------------------------
------------------------------SS------------------------------------------------
--------------------------------S---------------S-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-
----------------------------------------------------------------SSSSSSSS--------
--------------------------------------------S--------------S--------------------
--------------------------------------------------------S-----------------------
--------------------------------------------S-----------------------------------
----S-----------------------------------------S---------S-----------------------
-------------------S--------------------------------------------------S--------S
-S--------------------S--------------------S------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S----------------------------------------S-------------------
----------------------------S-----------------S---------------------------------
-------------------------------------S-----------------S--------------------S---
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SSS-----------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S--S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S------------------S------------------------------------------
----------S------------S--------------------------------------------------------
-------------------------------------------------------------------------S------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
---------------S-----------S----------------------------------------------------
--------------------------------------------------------------------------------
S------------------S------------------------------S--------------S-----S--------
------------------SS--------------S---------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
----------------S---SS-----SS----------S------------------S---------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------S--------------------------------------------S--------------------
----------------------------------S---------------------------------------------
-----------------------------------------------------------------------------S--
-------------S------------------------------------------------------------------
-------S-------------------------------------S-------S--------------------------
--------S------------------------------------------SS----------------SS----S----
-------------------SSSSSSSSS----------------------------------------------------
----------------------S------------S--------------SS--SSSS---S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---------------------------------S----------
--------------------------------------------------------------------------------
---------S--------S-------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------S----------------
>forward_783
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-------------------------------------------TTCATGTGGTCGGGTTCGTC-----------------
--------------------------------------------------------------------------------
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>reverse_2797
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----------------------------------------------------------------------------CCCT
TTTGGTTTGCAGGTCT----------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>forward_1645
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-------------------------CATCCGATCCTAATCCGCGT-----------------------------------
--------------------------------------------------------------------------------
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>reverse_3539
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------------------TAACCTCCGCTGGTATTTGCT-----------------------------------------
--------------------------------------------------------------------------------
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>forward_2910
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----------TGGAACAACAGGTGAAGCCT--------------------------------------------------
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>reverse_4974
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-------------GTCGACCACTGACACTGAGA-----------------------------------------------
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-------------------------------------------------------------------------------
