>input_sequence_23504
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------------------------------------------------------ATGGATCCCCTTCTGGTCGTGTGGAG
TAAGGGGAGAGAGGGGGTACTGTAAGATTACTAT-----AAGTGGTTCTAATTACTCTGCACAGTTTCAAAATCACCGTG
CTAATCGTATTTGTGTTCTGTTATTCTTGCGCAGATCATATACTATGGAAACTCTACGTGACATGGCTCTGCCACCAGGA
TTTGGATTCCATCCCAAGGACACTGAACTCGTTTCTCACTATCTGAAAAAGAAAATACTCGGTCAGAAAATTGAATATGA
CATTATACCTGAGGTGGATATATACAAGCATGAACCATGGGATTTACCTGGTAAGTTGAAGATGCTTCTATATGGTTGCC
TGTCATTATTTTGGTTCATAGTAAAATACAGTATGGAGGAGAAAAAGGTTTATTTCCTGCTTCCATATTTGTACTTTGTT
CTTTTCCACAAATTGAGCCTTCTTGTGTCACATAAT-ATAATTATCGGGTAATGATATCATAACTAGACATTTGGTAGGA
GTAACTAAAGAACGTGGCATATACCCTTGTTTAACCAGTGATGATAGGGCATGTACAATGGTGCTATCTTAGCAGTGCCA
CTTAGTATAAATGTTGAGGCGGAGGAGAGAGAAATCATAAGAAAAGGCTTGTCTTCTCTTATTTAAGAAATGATCTCTTA
GAACAACATGTCTCACCACGTTCTTAGGAATAACTAGTTATTGAAGATAAGGCTAAGAGATAACCCATTGTAGACATGCT
TTTATTGTCATTTCTAAATTACATGCAGGACATAAGATAAGACTGTCTTATCAACCACTGTGCATGCCCTTAGTAGTTAA
TCTTAATAATGCTTT-----------ATAATTTTAACAGTTGACCGCTAATGGTGTATTTTCTTTGTCAGTACTCATCCT
TCGGCATTATAGAGGATTTACTTTCTGTTTTTAGTATCCGATGCGTTCTAGATTTTATCTGCCGTGTTCTTCAAATCCTC
ATCGTACCTAATCCTCTGATGATACTTCATGTTACAGCAAAGTGCAATGTTCCAACCCAGGATAACAAGTGGCATTTCTT
TGCTGCTCGAGACAGAAAGTATCCTAATGGTGCTCGGTCAAATAGGGCAACGGTTGCTGGGTATTGGAAGTCTACTGGAA
AAGACCGGGCTATTAAGGTGGATAAGCGGACCATAGGAACAAAGAAAACTTTAGTTTTTCATGAAGGTCGGCCTCCCACT
GGAAAACGTACTGAGTGGATTATGCATGAATACTACATAGATGAGAACGAATGTCAAGCCTGCCCTGATATGAAGGTATT
GTACCAACAATTGAGGTTTCAAAATATTAGTATATTAACAAACAGCATGAGAGAGCTACATACGTTTCCTTGCATCTTTT
ACATATTATGTTACATTACTTGATGTGCATTTCACATGTTAGATGCCTTAAAAAAAGGCACAAACTTGAAATCTAGTGTG
CTAATGTTGTTTCTTTCTTCTTCAGGATGCCTTTGTTCTATGTAAAGTTACTAAAAGAATTGACTGGACATCAGAGAATG
GTAACGAGGTGGGCAATAATAACCCTCAGCCACAACAAGCAAATGTTGCTGCTATTTTAGCTGTCAGTGTTGAACAACCA
GATACTGCTGCATCATCAATTATTGGTGATGAACTTCCAAGTGATGCTGCTACCGTAGATATCCCTGCTCACACAACTCC
AGATGGGAATGATGACCTTAAAGAATGGCTGGAAGAACTGCTTGATACGTCCTTTGATCCTTCTGCTAACACTGCAGTGG
ATTCTGTTTCTGCTCAACTGTCTCCGGATGAACAAAATGCTGAATCATCGGTATGTTATCGCTCACAGCAGTGCTTAGTA
TTTAAACAATTCAACCAATAGTTCCCTTGTAAGGAAAAATGCTCATGCATAGGCAAGAAATTATTAGGTAGATTTTGCAA
GCCAAGAAGCTTCTTCATAATAATTTTGATCTC-TGCATGTGCTAGTTGCTTGGTGGTAGTTGATAGAGCTAACTAGGTA
TGCATAAATCACTCACGCCAGAAAATACTGGTAGAACTTTGCCGATATGTGGATACCACAGACAACAGTGCACTACAAAT
GAGTTTATTTATGCACACAAAAACAAAATCTAAATTGCAGTGCTATTAATTATTTTCAAGAAACTCTGAATTGTCCAATG
CAATCTTAAATAAAGTTGAAACTAGCCAGAGTTATTAGTTATTACAACTTGTTCTGAACCTGGTGTTAGCAGCTTGTCAA
TTCCTTAAACTAGCTTAATTGCTAGTGCTACTCCTTTGTCCTGTCTCTTTGTTGCTGAATTTGTGTGTACCTCAGGATTA
TGGGCTCATGTAACAGTAATACTCCTCTTAAAATATTAATTTT-AAGTTATGAGCATATCATAGTGCAAATTATGAGCAA
TCTTCTCCTTTCTGCTGGGCATGGTACTATATTTTTTAGTTCCTGCATGCTTACTCATTGCATTTATTTTCCCTGCTGAA
TTACAGAACATTGGTGCTATGGCTCCGAAAGTGGAACTGGACTATGCCAGCCCTAACCAGACTGTGGTAGACGATACAGA
CTTCCTGTTGCCAGATGATATTCACTCCATGTTGTATCCTGGTAGTGATGACTTCACTTCATGGCAGCAAACATACTTTA
CGGCGGCGGATCCCTTCAGTCTGTCAAACAACTTCATGGATGAATTTCAGATGAAAGAGCTACAGTTACCTCTGGAAAAT
AATGGGCCTAATCTGTATGAACCTGCTGATACTGGAATTGTAGTGCGAACACGTCATGGGGGAACATCTGCAGCTAGCGT
TCCACCATACAAGGCTCGACTTCAGCAAAGTCTTGGCAGGATGGTTACGAGCAGCTCTGAATCCATCAACCAGACTATCA
AGTTCGTTGACAACAACGGTCATCTTGATCTCATGACTAATGTGAAACACCAGAAGAAACATGTGCGTGATATTGCTTCT
GCCAGGCAGTCTGATGCAGAGAAGTGTGGAAGTCACAACAACCAAGGATTTCTCAGGGGCGTCCAAAGGGCATTTAGAGG
CTGTTCAGCAACAGGACTCAATATACTCGTTGCTCTTTGCATGGTTGGAGTTGCTGCAGCAATACTGCACCATGGACGTC
ACCGTGGTGGGATCAGTTTGTAG---------------------------------------------------------
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>chr3D_1_TraesCS3D01G183900
GTGACACTCGGTATGCCAAGGCTTCAAACGAGTGAGCGTAGCCAGTAGCAGCGCGCCACTAACAAAAGCC-ACGATAGCT
AGACTTGGGCGACACGATAGGAGGACCAACGTGGCTGCCGGCCCCACTGCCACCGCACCGGCGCCCCGAGGGAGCGAATC
AGTGGATCCGACGGCTTGACCGGGAGGGAGGACGCCCGCGTTAAGGAAGCGAGTTTATTGGTTTAAAACCGCGTCCGCAC
AGAGTGGGCGCACGCCACAGGCCCG---CTTCTTGGCAGCTTCCTCGCGCAGTCCCTC----CCTCCTCATCCTCTCACC
CCACGTCTCACCTCACGCGCCTCGCATCCCATTCCCTTTTCCAGCCCCCCTCGCTGCGTCTGCGTCTGCGTCTGCTGGCA
AGAGACACAGCACCACGCCGCGGCCGCCCCACCCACCCGCCAGCCAGCCAGCCCTCACAAAGACTTGACCTGTTCCTGCG
ACCGCCTCGGCCTCTTCGCCTCCACCGCCTCTTCCGCGATCCCCTTCCGCCCGCCGTCTTCCGTCCGCAGCCCCAGCACC
GGCTTCCCCCTGCTGGTTACCGCTCTCCTCTCCGGTCGATCGGTCGGGGGTACGTCCCGGCGCCGTCGCGGCTTCTGCTC
TCCGCACCACAGGTGAGGGAACTCCTTCCTCGGCGACCGCTTCCCGATCCATTCCGTTTCGCGTGAGAAGAGGCGCCTTC
CTCGGTGCCGGCGCTTTTGCCGCGGTTGCCGGCAGAGCTCTCGTTCGTTTAGGGCTCGAGGTTTTGGTGCTCCTGGATTT
ACGCCTTTGCGGGAAGGGGAGGAGAG---TTTTTTTTTTTTTGGCCGGAG---CTCCTCTCCTCGAGTCCCGATTTTGGC
GCATGCGGAGCTCGATTCGGGGCCCCTTCCCGGGAAACCTCGGCCCGTTGGCTCGATCGACCACATAGCGGGGATTCGAG
TTGCGCCATGGTGCGTGGGGAGCTGGGGCTCATTGCCGTCTCGTTGCAGCACTAATGGATCCCCTTCTGGTCGTGTGGAG
TAAGGGGAGAGAGGGGGTACTGTAAGATTACTAT-----AAGTGGTTCTAATTACTCTGCACAGTTTCAAAATCACCGTG
CTAATCGTATTTGTGTTCTGTTATTCTTGCGCAGATCATATACTATGGAAACTCTACGTGACATGGCTCTGCCACCAGGA
TTTGGATTCCATCCCAAGGACACTGAACTCGTTTCTCACTATCTGAAAAAGAAAATACTCGGTCAGAAAATTGAATATGA
CATTATACCTGAGGTGGATATATACAAGCATGAACCATGGGATTTACCTGGTAAGTTGAAGATGCTTCTATATGGTTGCC
TGTCATTATTTTGGTTCATAGTAAAATACAGTATGGAGGAGAAAAAGGTTTATTTCCTGCTTCCATATTTGTACTTTGTT
CTTTTCCACAAATTGAGCCTTCTTGTGTCACATAAT-ATAATTATCGGGTAATGATATCATAACTAGACATTTGGTAGGA
GTAACTAAAGAACGTGGCATATACCCTTGTTTAACCAGTGATGATAGGGCATGTACAATGGTGCTATCTTAGCAGTGCCA
CTTAGTATAAATGTTGAGGCGGAGGAGAGAGAAATCATAAGAAAAGGCTTGTCTTCTCTTATTTAAGAAATGATCTCTTA
GAACAACATGTCTCACCACGTTCTTAGGAATAACTAGTTATTGAAGATAAGGCTAAGAGATAACCCATTGTAGACATGCT
TTTATTGTCATTTCTAAATTACATGCAGGACATAAGATAAGACTGTCTTATCAACCACTGTGCATGCCCTTAGTAGTTAA
TCTTAATAATGCTTT-----------ATAATTTTAACAGTTGACCGCTAATGGTGTATTTTCTTTGTCAGTACTCATCCT
TCGGCATTATAGAGGATTTACTTTCTGTTTTTAGTATCCGATGCGTTCTAGATTTTATCTGCCGTGTTCTTCAAATCCTC
ATCGTACCTAATCCTCTGATGATACTTCATGTTACAGCAAAGTGCAATGTTCCAACCCAGGATAACAAGTGGCATTTCTT
TGCTGCTCGAGACAGAAAGTATCCTAATGGTGCTCGGTCAAATAGGGCAACGGTTGCTGGGTATTGGAAGTCTACTGGAA
AAGACCGGGCTATTAAGGTGGATAAGCGGACCATAGGAACAAAGAAAACTTTAGTTTTTCATGAAGGTCGGCCTCCCACT
GGAAAACGTACTGAGTGGATTATGCATGAATACTACATAGATGAGAACGAATGTCAAGCCTGCCCTGATATGAAGGTATT
GTACCAACAATTGAGGTTTCAAAATATTAGTATATTAACAAACAGCATGAGAGAGCTACATACGTTTCCTTGCATCTTTT
ACATATTATGTTACATTACTTGATGTGCATTTCACATGTTAGATGCCTTAAAAAAAGGCACAAACTTGAAATCTAGTGTG
CTAATGTTGTTTCTTTCTTCTTCAGGATGCCTTTGTTCTATGTAAAGTTACTAAAAGAATTGACTGGACATCAGAGAATG
GTAACGAGGTGGGCAATAATAACCCTCAGCCACAACAAGCAAATGTTGCTGCTATTTTAGCTGTCAGTGTTGAACAACCA
GATACTGCTGCATCATCAATTATTGGTGATGAACTTCCAAGTGATGCTGCTACCGTAGATATCCCTGCTCACACAACTCC
AGATGGGAATGATGACCTTAAAGAATGGCTGGAAGAACTGCTTGATACGTCCTTTGATCCTTCTGCTAACACTGCAGTGG
ATTCTGTTTCTGCTCAACTGTCTCCGGATGAACAAAATGCTGAATCATCGGTATGTTATCGCTCACAGCAGTGCTTAGTA
TTTAAACAATTCAACCAATAGTTCCCTTGTAAGGAAAAATGCTCATGCATAGGCAAGAAATTATTAGGTAGATTTTGCAA
GCCAAGAAGCTTCTTCATAATAATTTTGATCTC-TGCATGTGCTAGTTGCTTGGTGGTAGTTGATAGAGCTAACTAGGTA
TGCATAAATCACTCACGCCAGAAAATACTGGTAGAACTTTGCCGATATGTGGATACCACAGACAACAGTGCACTACAAAT
GAGTTTATTTATGCACACAAAAACAAAATCTAAATTGCAGTGCTATTAATTATTTTCAAGAAACTCTGAATTGTCCAATG
CAATCTTAAATAAAGTTGAAACTAGCCAGAGTTATTAGTTATTACAACTTGTTCTGAACCTGGTGTTAGCAGCTTGTCAA
TTCCTTAAACTAGCTTAATTGCTAGTGCTACTCCTTTGTCCTGTCTCTTTGTTGCTGAATTTGTGTGTACCTCAGGATTA
TGGGCTCATGTAACAGTAATACTCCTCTTAAAATATTAATTTT-AAGTTATGAGCATATCATAGTGCAAATTATGAGCAA
TCTTCTCCTTTCTGCTGGGCATGGTACTATATTTTTTAGTTCCTGCATGCTTACTCATTGCATTTATTTTCCCTGCTGAA
TTACAGAACATTGGTGCTATGGCTCCGAAAGTGGAACTGGACTATGCCAGCCCTAACCAGACTGTGGTAGACGATACAGA
CTTCCTGTTGCCAGATGATATTCACTCCATGTTGTATCCTGGTAGTGATGACTTCACTTCATGGCAGCAAACATACTTTA
CGGCGGCGGATCCCTTCAGTCTGTCAAACAACTTCATGGATGAATTTCAGATGAAAGAGCTACAGTTACCTCTGGAAAAT
AATGGGCCTAATCTGTATGAACCTGCTGATACTGGAATTGTAGTGCGAACACGTCATGGGGGAACATCTGCAGCTAGCGT
TCCACCATACAAGGCTCGACTTCAGCAAAGTCTTGGCAGGATGGTTACGAGCAGCTCTGAATCCATCAACCAGACTATCA
AGTTCGTTGACAACAACGGTCATCTTGATCTCATGACTAATGTGAAACACCAGAAGAAACATGTGCGTGATATTGCTTCT
GCCAGGCAGTCTGATGCAGAGAAGTGTGGAAGTCACAACAACCAAGGATTTCTCAGGGGCGTCCAAAGGGCATTTAGAGG
CTGTTCAGCAACAGGACTCAATATACTCGTTGCTCTTTGCATGGTTGGAGTTGCTGCAGCAATACTGCACCATGGACGTC
ACCGTGGTGGGATCAGTTTGTAGTAGAGGGGGATCAGAAGCGTGCCTAGTTTTAGCTGTACAAATCTGTAGCATCTACGC
ACTGTAATCTTGA------CAGTAGGCACTGTGATTGAAGTGGATGAGCGATCGAGCATGTG------------GCCTTC
TGGAGGTACTTG-TCGTTA-------CACGTAATGTGTGCTCTGGTGCAGGACATTGATTCCCTTATATCTGGTTTCTGC
ATGGTGTTTGTACATATGAAGCCCTTGCTTTTTGATCAGTCTGGCTA-GTATTATGGTGATGGATGAGTGCCAAACAGAA
AAGAACAAAAACATAGGGAATAATAGCTGTGATAAGTTCTCTCGTTACTGCATGCTAGATTTGTAACTCTGAACCATAGT
TAACAGCTTGTAGTAGGGTCATCTTTTTCATTCGAGTTGAACCAAGGATACTTATGTAAAGTAGCGAGTAATAATCATCA
TCTCACTATGGATTACAGCATTATTGGATTACAGTATCGCTGTCAT----------------------------------
----TTGAAGCGATGACCTGTTTGCTTGAGTACTACTGTCATTTGAAGCGATGGCCTGTTTGCTTGCTGACATTGGCCGC
CTCGCCGGTCACGCTTTGACGCATGACAGCTAAAACAACGAAAATTCGCAGGGCACGCACCAGCACATCTGTCTATTGAT
TTGCACGGTGATTTGGGCACTTGTTTTGACGGAAATTGCTTGGAAAA---------------------------------
---------------------------GAGAAAAATTCTCAACCCTGTCAATATGACACAATATA--CGTACGTTTATCT
TGTACTAATACTTCGTCCAACCGTTCTCGTACATCCCTATTCCTGTGTTAGGTTTCATCTTCTCATCTTGTTTAATTCCC
TCTTTACTCTTAAACC-GTTCTTCTTTTCAATCCTCCGTCCTGTTCAAATCCTTCTTTCTTAAACCGATTC-TCTTTGCA
TTCATGTCTCATCCATTGATATTGTTTACCTTCTTACTCTGTACACCTGTTCCGGTGTCACCTTTCCCAACTCTTTTTCG
CGTCATCTGACTTCTTCCTTTTTTTTGAAACA
>chr3B_9
--------CGGTATGCCAAGGCTCCAAATGAGTGAGCGTAGCCAGTAGCAGCACGCCACTCCC-AAAGCCCACGATAGCT
AGACTTGGGAGACACGATAGGAGGACCAACGTGGCTGCCGGCCCCACCGCCACCGCACCGGCGCCCCGAGGGAGCGAATC
AGCGGATCCGACGGCTTGACCGGGAGGGAGGACGCCCGCGTTAAGGAAGCGAGTTTATTGGTTTAAAACCGCGTCCGCAC
AGAGTGGGCGCACGCCACAGGCCCG---CTTCTTGGCAGCTTCCTCGCGCAGTCCCT-----CCTCCTCATCCTCTCACC
CCACGTCTCACCTCACGCGGCCCGCATCCCATTCCCTTTTCCAGCCCCCCCTCG-----CTGCGTCTGCGTCTGCTGGCA
AGAGACACAG---CACGCCGCGGCCGCCCCACCCACCCGCCAGCCAGCC----CTCACAAAGACTTGACCGGTTCCTGCG
ACCGCCTCGGCCTCTTCGCCTCCACCGCCTCTTCCGCGATCCCCTTCCGCCCGCCGTCTTCCGTCCGTGGCCCCAGCTCC
GGCTTCCCCCTGCTGGTTACCGCTCTCCCCTCCGATCGATCGGTCGGGGCTACGTCCCGGCGCCGGCGCGGCT-CTGCTC
TCCGCACCACAGGTGAGGGAACTCCTTCCTCGGCGACCACTTCCCGATCCATTCCGTTTCGCGTGAGAAGAGGCGCCTTC
CTGGGTGCCGGCGCTTTTGCCGCGGTTGCTGGCAGAGCTCTCGTTGGTTTAGGGCTCGAGGTTTTGGTGCTCCTGGATTT
ACGCCTTTG-GGGGCAGGGAGGAGAGATTTTTTTATTTTTTTGGCCGGAACTCCTCCTCTCCTCGAGTCCCAATTTTGGC
GCATGCGGAGCTCGATTCGGGGCCCCTTCCTGCGAAACCACGGCCCGTTGGCTCGATCGACCACATAGCGGGGATTCGAG
TTGCACCATGGTGCGTGGGGAGCCGGGGCTCATTGCCGTCTGGTTGCAGTACTAATGGATCCCCTTTTGGTCGTGTGGAG
TAAGGGGAGAGAGGGGGTACTGCGATAAGAATACTATAAAAGTGGTTCTAATTACTCTGCACAGTTTCAAAATCACCTTA
CTAATCGTATTTATGTTCTGTTATTCTTGCGCAGATCATATACAATGGAAACTCTACGTGACATGGCTCTGCCACCAGGA
TTTGGATTCCATCCTAAGGACACTGAACTCGTTGCTCACTATCTGAAAAAGAAAATACTTGGTCAGAAAATTGAATATGA
CATTATACCAGAGGTGGATATATACAAGCATGAACCATGGGATTTACCTGGTAAGCTGATGATGCTTCTATATGGTTGCC
TGTGATTATTTTGGTTCATAGAAAAATACAGTATGGAGGAGAAAACAGTTTAGT------------------------TT
CTTCTCCACAAATTGAGCCTTCTCGTGTCACACAATCATAATTATGGGGTAATGA-ATCATAACTAGACATTTAGTAAGA
GTAACTAAAGAACGTGACATATACCCTTGTTTAACTAGTG----------------------------------------
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---------------------------------------------------------------------TTAGTAGTTAA
TCTTAATACTGTTTGTCTTTCGTCTAATAAATTTAACAGTTGATT-CTAATGATGTAGTTTCTTTGTCAGTACCGGTCCT
TTAGCATTATGGAGGATTTACTTTCTGCTTTTAGTATCCGATGCATTCTAGAATTTATCCGCTGTGTTCTTCAAATCCTT
ATC-----TAACCCTCTGATGATATTCCATGTTACAGCGAAGTGCAATGTTCCAACACAGGATAACAAGTGGCATTTCTT
TGCTGCTCGAGACAGAAAGTATCCTAATGGTGCTCGGTCAAATAGGGCAACGGTTGCTGGGTATTGGAAGTCTACTGGAA
AAGACCGGGCCATTAAGGTGGATAAGAGGACCATAGGAACAAAGAAAACTTTAGTTTTTCATGAAGGTCGGCCTCCCACT
GGAAAACGTACTGAGTGGATTATGCATGAATACTACATAGATGAGAACGAATGTCAATCCTGCCCTGATATGAAGGTATT
GTACCAACAATTGAGGTTTCAAAACATTAGTATATTAAGAAACAGCATGAGAGAGCTAGATACATTCCGTTGCATCTTTT
ACATGTTATGTTACATTACTTGATGTGCATTTCACATGTTAGATGCCTTAAAAAAAGGCACAAACTTGAAATCTAGTGTG
CTAATGTTGTTTCTTTCTTCTTCAGGATGCCTTTGTTCTATGTAAAGTTACTAAAAGAATTGACTGGACATCAGAGAATG
GTAACGAGGTGGGCAATAATAACCCTCAGCCACAACAAGCAAATGTTGCTGCTATTTTAGCTGTCAGTGTTGAACAGCCA
GATACTGCTGCATCATCAATTATTGGTGATGAACTTCCAAGTGATGCTGCTACCGTAGCTATCCCTGCTCACATGACTCC
AGATGGGAATGATGACCTTAAAGAATGGCTGGAAGAACTGCTTGATACCTCCTTTGATCCTTCTGCTAACACTGCAGTGG
ATTCTGTTTCTGCTCAACTGTCTCCGGATGAACAAAATGCTGAATCATTGGTATGTTATCACTCACAGCAGTGCTTAGTA
TTTAAACAATTCAACCAATAGTTCCCTTGTAAGGAAAAATGCTTATGCATAGGCAAGAAACTATTAGGTAGATTTTGCAA
GCCAAGAAGCTTCTTCATAATAATTTTGATCTCATGCATGTGCGAGTTGCTTGGTGGTAGTTGATAGAGCTAACTAGGTA
TGCATAAATCACTCACGCCAGAAAATACTGGTAGAACTTTGCCGATATGTGGATACCACAGACAACAGTGCACTACAAAT
GAGTTTATTTATGCACACGAAAACAAAATCTAAATTGCAGTGCTATTAATTATTTTCAAGAAACTCTGAATTGTCCAATG
CAATCTTAAATAAAGTTGAAACTAGCCAGAGTTATTAGTTATTACAACTTGTTCTGGACCTGGTGTTAGTAGCCTGTCAA
TTCCTTAAACTAGCTTATGTGCTAGTGCTACTCCTTTGTCCTGTCTCTTTGTTGCTGAATTTGTGTGTACCTCAGGATTA
TGGGCTCATGTAACAGTAATACTC--CTTAAAATATTAATTTT-AAGTTATGAG----------TGCAAATTATGAGCAA
TCGTCTCCTTTCTGCTGGGCATGGTACTATA-TTTTTAGTTCCTGCATGCTTACTCATTGCATTTATTTTCCCTGCTGAA
TTACAGAACATTGGTGCTATGGCTCCGAAGGTGGAACTGGACTATGCCAGTCCTAACCAGACTGTGGTAGACGATATAGA
CTTCCTGTTGCCAGATGATATTCACTCCATGTTGTATCCTGGTAGTGATGACTTCACTTCATGGCAGCAAACATACTTTA
CGGCGGCGGATCCCTTCAGTCTGTCAAACAACTTCATGGATGAATTTCAGATGAAAGAGCTACAGTTACCTCTGGAAAAT
AATGGGCCTAATCTGTATGAACCTGCTGATACTGGAATTGTAGTGCGAACACGTCATGGGGGAACATCTGCAGCTAGCGT
TCCACCATACAAGGCTCGACTTCAGCAAAGTCTTGGCAGGATGGTTACGAGCAGCTCTGAATCCATCAACCAGACTATCA
AGTTCGTTGACAATAACGGTCATCTTGATCTCATGACTAATGTGAAACACCAGAAGAAACATGTGCGTGATATTACTTGT
GCCAGGCAGTCTGATGCAGAGAAGTGTGGAAGTCACAACAACCAAGGATTTTTCAGGGGCGTCCAAAGGGCATTTAGAGG
CTGTTCAGCAACAGGACTCAATATACTCGTTGCTCTTTGCATGGTTGGAGTTGCTGCAGCAATACTGCACCATGGACGTC
ACCGTGGCGGGATCAGATTGTAGTAGAGGGGGATCAGAAGCGTGCCTAGTTTTAGCTGTACAAATCTGTAGCATCTACGC
ACTGTGATCTTGA------CAGTAGGCACTGTGATTGAAGTGGATGAGCGATTGAGCATGTGGCTGGGATCCTTGCCTTC
TGGAGGTACTTGGTCGTTA-------CACGTAATGTGTTCTCTCGTGCAGGACATTGATTCCCTTATATCTGGTTGCTGC
ATGGTGTTTGTACATATGAAGCTCTTGCTTTTTGATCAATCTGGCTAGGTATTATGGTGATGGATGAGTGCCAAACAGAA
AAGAACAAAAACATAGGGAATAATAGTTGTGATAAATTCTCTC-TTACTACATGCTAGATTTGTAACTCTGAACCATAGT
TAACAGCTTGGAGTAGGGTCATCTTTTTCATTCGAGTTGAACTAAGGATATTTATGTAAATTAGCGAGTAATAATCATCG
TCTC--TATGGATTACAGCATTATTGGATCACAGTATTGCTGTCATTTGAAGCGATGACCTGTTTGCTTGAGTACTACTG
TCATTTGAAGCGATGACCTGTTTGCTTGAGTACTACTGTCATTTGAAGCGATGACCTGTTTGCTTGCTGACATTGGCCGC
CTCGCCAGTCACGCTTTGACGTATGACAGCTAAAACAACGAAAATTTGCAGGGCACGCACCAGCACATCTGTCTATTGAT
TTGCACGGTGATTGGGGCACTTGTTTTAACAGAAATTGCTTGAAAAAGAGAAAA--------------------------
------------------------------AAAAAATCTCAACCCTGTCAATATGACACAATATATACGTACGTTTATCT
TGTACTA---CTTCGTCCAACCGTTCTCGTACATCCCTATTCCTGTGTTAGGTTTCATCTTCTCATCTTGTTTAATTCCC
TCTTTACTCTTAAACCGGTTCTTCTTTTCAATCCTCCGTCCTGTTCAAATCCTTCTTTCTTAAACCGAATCTTCTTTTCA
ATCATGTCCCATCCATTGATATTGTTTACCTTCTTACTCTGGACACCTGTTCCGGTGTCACCTTTCCCTACTCTTTTTCG
CGTCATCTGACTTCTTCCTTT-----------
>chr3A_11
----------GTATGCCAAGGCTTCAAACGAGTGAGCGTAGCCAGTAGCAGCACGCCACTCCG-AAAGCC-ACGATAGCT
AGACTTGGGCGACACGATAGGAGGACCAACGTGGCTGACGGGCCCACCGCCACCGCACCGGCGCCCCGAGGGAACGAATC
AGCGGATCCGACGGCTTGACCGGGAGGGAGGACGCCCGCGTTAAGGAAGCCAAATTATTGGTTTAAAACCGCGTCCGCAC
AGAGTGGGCGCACGCCACAGGCCCGCTTCTTCTTGGCAGCTTCCTCGTGCAGTCCCTCCCTCCCTCCTCATCCTCTCACC
CCACGTCTCCCCTCACGCGCCTCGCACCCCATTCCCTTTTCCAGCCCCCCTCGCTTCGTCTGCGTCTGCGTCTGCGTCT-
-GAGACACAGCACCACGCCGCGGCCGCCCCACCCACCCGCCAGCCAGCCAGCCCTCACAAAGACTTGACCGGTTCCTGCG
ACCGCCTCGGCCTCTTCGCCTCCACCGCCTCTTCCGCGATCCCCTTCCGCCCGCCGTCTTCCGTCCGCAGCCCCAGCTCC
GGCTTCCCCCTGCTGGTTACCGCTCTCCCCTCCGATCGATCGGTCGGGGCTACGTCCCGGCGCCGGCGCGGCT-CTGCTC
TCCGCACCACAGGTGAGGGAACTCCTTCCTCGGCGACCACTTCCCGATCCATTCCGTTTCGCGTGAGAAGAGGCGCCTTC
CTCGGTGCCGGCGCTTTTGCCGCGGTTGCCGGCAGAGCTCTCGTTGGTTTAGGGCTCGAGGTTCTGGTGCTCCTGGATTT
AGGCCTTTG-GGGACAGGGAGGAGAGATTTTTTTTTTTTTTGGGCCGGAG---CTCCTCTCCTCGAGTCCCGATTTTGGC
GCATGCGGAGCGCGATTCGGGGCCCCTTCCGCCGAAACCTCGGCCCGTTGGCACGAACGACCACATAGCGGGGATTCGAG
TTGCACCATAGTGCGTGGGGAACTGGGGCTCATTGCCGTCTCGTTGCAGTACTAATGGCCCCCCTTTTGGTCGTGTGGAG
TAAGGGGAGAGAGGGGGTGCTGTAAGATTACTTG-----AAGTGATTCTAATTACTCTCTATAGTTTCAGAATCACAGTA
CTAATCGTATTTGTGTTTTGTTATTCTTGCCCAGATCATATACAATGGAAACTCTACGTGACATGGCTCTGCCACCAGGA
TTTGGATTCCATCCCAAGGACACTGAACTCGTTGCTCACTATCTGAAAAAGAAAATACTCGGTCAGAAAATCGAATATGA
CATTATACCAGAGGTGGATATATACAAGCATGAACCATGGGATTTACCTGGTAAGTTGAAGATGCTTGTATATGGTTGCC
TGTGATTATTCTGGTTCATAGTAAAATGCAGTATGGAGGAGAAAAATGTTTATTTTCTGCTCCTATATTTGTACTTTGTT
CTTTTCCACAAATTGAGCCTTCTCGTGTCACATAAT-GTAATTATT-GGTAATGATATCATAACTAGACATTTGGTAGGA
GTGACTAAAGAACGTGGCATATACCCTTGTTTAACCAGTGATGATAGGGCATGTACAATGGTGCTATCTTAGCAGTGCCA
CTTAGTATAAATGTTGAGGCGGAGGAGAGAGAAATCATAAGAAAAGGCTTGTCTTCTCTTATTTAAGAAATTATCTCTTA
GAA---CATGTCTCACTACGTTCTTAGGAATAACTAGTTATTGAAGATAAGGCTAAGAGATGACCCATTGTAGACATGCT
TTTATTGTCATTTCTAAATTACATACAGGACTTAAGATAAGACTGTCTTATCAACCACTGTGCATGCCCTTAGTAGTTAA
TCTTAATAA-GCTTT-----------ATAATTTTAACAGTTGATCGCTAATGGTGTATTTTCTTTGTCAGTACTCATCCT
TTGGCATTATAGAGGATTTACTTTCTGTTTTTAGTATCCGATGCATTCTAGATTTTATCTGCCGTGTTCTTCAAATCCTC
ATCGTACCTAATCCTCTGATGATACTTCATGTTACAGCAAAGTGCAATGTTCCAACCCAGGATAACAAGTGGCATTTCTT
TGCTGCTCGAGACAGAAAGTATCCTAATGGTGCTCGGTCAAATAGGGCAACGGTTGCTGGGTATTGGAAGTCTACTGGAA
AAGACCGGGCCATTAAGGTGGATAAGCGGACCATAGGAACAAAGAAAACTTTAGTTTTTCATGAAGGTCGGCCTCCCACT
GGAAAACGTACTGAGTGGATTATGCATGAATACTACATAGATGAGAATGAATGTCAAGCCTGCCCTGATATGAAGGTATT
GTACCAACAATTGAGGTTTCAAAACATTAGTATATTAAGAAACAGCATGAGAGAGCTAGATGCATTTCGTTGCATCTTTT
ACATGTTATGTTACATTACTTGATGTGCATTTCACATGTTAGATGCCTTAAAAAAAGGCACAAACTTGAAATCTAGTGTG
CTAATGTTATTTCTTTCTTCTTCAGGATGCCTTTGTTCTATGTAAAGTTACTAAAAGAATTGACTGGACATCAGAGAATG
GTAACGAGGTGGGCAATAATAACCCTCAGCCACAACAAGCAAATGTTGCTGCTATTTTAGCTGTCAGTGTTGAACAACCA
GATACTGCTGCATCATCAATTATTGGTGATGAACTTCCAAGTGATGCTGCTACGGTAGCTATCCCTGCTCACACAACTCC
AGATGGGAATGATGACCTTAAAGAATGGCTGGAAGAACTGCTTGATACCTCCTTTGATCCTTCTGCTAACACTGCAGTGG
ATTCTATTTCTGCTCAACTGTCTCCGGATGAACAAAATGCTGAATCATCGGTATGTTATCCCTCACAGCAGTGCTTAGTA
TTTAAACAATTCAACCAATAGTTCCCTTGTAAGGAAAAATGCTTATGCATAGGCAAGAAATTATTAGGTAGATTTTGCAA
GCCAAGAAGCTTCTTCATAATAATTTTGATCTCATGCATGTGCTAGTTGCTTGGTGGTAGTTGATAGAGCTAACTAGGTA
TGCATAAATCACTCACGCCAGAAAATACTG-TAGAACTTTGCTGATATGTGGATACCATAGACAACAGTGCACTAAAAAT
GAGTTTATTTATGCACAGAAAAACAAAATCTAAATTGCAGTGCTATTAATTATTTCCAAGAAACTCTGAATTGTCCAATG
TAATCTTAAATAAAGTTGAAACTAGCCAGAGTTATTAGTTATTACAACTTGTTCTGGACCTGGTGTTAGTAGCTTGTCAA
TTCCTTAAACTAGCTTATGTGCTAGTGCTACTCCTTTGTCCTGTCTCTTTGCTGCTGAATTTGTGTGTACCTCAGGATTA
TGGGCTCAT--------------CCTCTTAAAATATTAATTTTTAAGTTATGAGCGTATCATAGTGCAAATTATGAGCAA
TCTTCTCCTTTCTGCTGGGCATGGTACTATATTTTTTAGTTCCTGCACGCTTACTCATTGCATTTATTTTCCCTGCTGAA
TTACAGAACATTGGTGCTATGGCTCCGAAGGTGGAACTGGACTATGCCAGTCCTAACCAGACTGTGGTAGACGATACAGA
CTTCCTGTTGCCAGATGATATTCACTCCATGTTGTATCCTGGTAGTGATGACTTCACTTCATGGCAGCAAACATACTTTA
CGGCGGCGGATCCCTTCAGTCTGTCAAACAACTTCATGGAGGAATTTCAGATGAAAGAGCTACAGTTACCTCTGGAAAAT
AATGGGCCTAATCTGTATGAACCTGCTGATACTGGAATTGTAGTGCGAACACGTCATGGGGGAACATCTGCAGCCAGCGC
TCCACCATACAAGGCTCGACTTCAGCAAAGTCTTGGCAGGATGGTTACGAGCAGCTCTGAATCCATCAACCAGACTATCA
AGTTCGTTGACAACAACGGTCATCTTGATCTCATGACTAATGTGAAACACCAGAAGAAACATGTGCGTGATATTACTTCT
GCCAGGCAGTCTGATGCAAAGAAGTGTGGAGGTCACAACAACCAAGGATTTCTCAGGGGCATCCAAAGGGCATTTAGAGG
CTGTTCAGCAACAGGACTGAATATACTCGTTGCTCTTTGCATGGTTGGAGTTGCTGCAGCAATACTGCACCATGGACGTC
ACCGTGGTGGGATCAGTTTGTAGTAGAGGGGGATCAGAAGCGTGCCTAGTTTTAGCTGTACAAATCTGTAGCATCTACGC
ACTGTGATCTTGATCTTGACAGTAGGCACTGTGATTGAAGTGGACGAGCGATTGAGCATGTGGCTGGGATCCTTGCCTTC
TGGAGGTACTTGGTCGTTAGTCGTTACACGTAATGTGTGCTCTGGTGCAGGACATTGATTCCCTTATATCTGGTTTCTTC
ATGGTGTTTGTACATATGAAGCTCTTGCTTTTTGATCAGTCTGGCTAGGTACTATGGTGATGGATGAGTGCCAAACAGAA
AAGAACAAAAACATAGGGAATAATAGCTGTGATAAGTTCTCTC-TTACTGCATGCTAGATTTGTAACTCTGAACCATAGT
TAACAGCTTGTAGTAGGGTCATCTTTTTCATTCGAGTTGAACCAAGGGTACTTATGTAAATTAGCGAGTAATAATCATCA
TCTCACTTTGGATTACAGCATTATTGGATTACAGTATTGCTGTCATTTGAAGCGATGACCTGTTTGCTTGAGTACTACTG
TCATTTGA--------------------------------------AGCGATGACCTGTTTGCTTGCTGACATTCGCCGC
CTCGGCAGTCACGCTTTGACGCATGACAGCTAAAACAATGAAAATTCGCAGGGCACGCACCAGCACATCTGTCTATTGAT
TTGCCCTGTGATTCGGGCACTTGTTTTGACGGAACTTGCTTGAAAAGGAGAAAAAATCTCAACCCTGTCAATATGGCTAC
TTGTTTTGACGGAAATTGCTTGAAAAGGAGAAGAATTCTCAACCCTGTCAATATGGCACAATATA--CGTACAT------
-----------------CAACCGTTCTTGTGCATCACTATTCCTGTGTTAGGTTTCATCTTCTTATCTTGTTTAATTCCC
TCTTTACTCTTAAACCGGTTCTTTTC---------------------AATCCTTCTTTCTTAAACCGATTCTTCTTTTCA
ATCATGTCTCATCCATTGATATTGTTTACCTTCTTACTCTGTACACCCGTTCCGGTGTCACCTTTCCCTACTCCTTTTCG
CGTCATCTGACTTCTTCCTTT-----------
>SNPs
SSSSSSSS--------------------------------------------S-------SS-S----------------
-----------------------------------------------S--------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
----------------------------------------------------------------------S---------
-----------------------------------------------------------------------------S--
----------------------------S-----S--------------S---------------S-------S------
--------------------------------------S-----------------------------------------
---------------------------------------------S----------------------------------
---------S----SS----------------------------------------------------------------
------------------------------S-S-----------------------------------------------
----S--------------------------------------------S----------------S-------------
---------------------------------S---------------------------------------------S
-------------------------------------------S------------------------------------
---------------------------------S----------------------------------------------
---------S----------------------------------------------------------------------
---S------------------------------------------S--------S-----S-S----------------
-----------------------S---------------------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---SSS----------S--------------------------------------------S------------------
------------------------S------S------------------------------------------------
-------------------------------------------S------------------------------------
-S------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------S-------------------S----S----S-----------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
------------------------------------------------S-------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S------------S----------
-----------------SS-------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S----------------------------------------------S---------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------------S------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------S--------------------------
------S-------------------------------------------------------------------------
-------------S----------------------------S-------------------------------------
--------------------------------------------------------------------------------
-------SSS----------------------------------------------------------------------
-----------------------------------------------------------------------------S--
S-------------------------------------------------------------------S-----------
---------------------SSSSSSSSSSS
>forward_471
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCCTCACAAAGACTTGACCT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
>reverse_1686
--------------------------------------------------------------------------------
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-----ACATGTCTCACCACGTTCTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
>forward_810
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CTCCTGGATTT
ACGCCTTTGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2699
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATATCCCTGCTCACACAACTCC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_2171
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CTACTGGAA
AAGACCGGGCT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_3550
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------AGTGGAACTGGACTATGCCAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_2699
--------------------------------------------------------------------------------
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---------------------------------------AGTGATGCTGCTACCGTAGA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_4678
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CGCTGTCATTTGAAGCGATGA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
