CLUSTAL X (1.81) multiple sequence alignment input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TCCCGGAATGCATGATTTATCATTTAGTTTTTTT--TTA----------- chr2D_1 TCCCGGAATGCATGATTTATCATTTAGTTTTTTTC-TC------------ chr2B_2 -CCCGGAATGCATGATTTATCATTTAGTTTTTTT--TC------------ chr2A_4 ---CGGAATGCATGATTTTTCATTTAGTTTTTTT--TC------------ chr2B_5 ----GGAATGCATGATTTATCATTTTGCTTTTTTTTTC------------ chr2D_5 CTCTC--------------------------------------------- chr2B_13 GCTAGATTGTCACCTTGATAATTAGAAGTTTAGAACTTTACACCCATTAT chr2B_31 ----------CACCTTGATAATTAGAAGTTTAGAACCTTACAGCCATTAT chr2B_31 ----------CACCTTGATAATTAGAAGTTTAGAACCTTACAGCCATTAT chr2B_31 TCGGATTACGTACCTCCTGAAGAACTTGTGAAATGGCTTGAAGCTGGTGA chr2D_418 TTCAT--------------------------------------------- chr2A_548 TAACTACTGAAACTACGGGTCCATCAAATCTGGAAAGGTCAAAAACTGAG chr2A_676 GAAAC--------------------------------------------- chr2B_691 TAACTACTGAAACTACCGGTCCATCAAATCTGGAAAGGTCAAAAACTGAG chr2D_2046 TAACTGCT------------------------------------------ chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TAA----------------------------------------------- chr2B_7496 GCTA---------------------------------------------- chr2B_8057 ACCTTTTAAAATGACTTCTAGTGTCAAAAAAGACAACTCTACGGCTAAAC SNPs --------------------------------------S----------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 CCATCCACCCTTTAAGACCTTCAACGTTGTTTACATGAAGACTTCATCCA chr2B_31 CCATCCACCCTTTAAGACCTTCAGCGTTTTTTACATGAAGACTTCATCTA chr2B_31 CCATCCACCCTTTAAGACCTTCAGCGTTTTTTACATGAAGACTTCATCTA chr2B_31 CAAGCCAATTTATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTT chr2D_418 -------------------------------------------------- chr2A_548 AGGCGCAAACAAAATAATCCAGCCGATGATCCTACTAAACAGTTATTAGA chr2A_676 -------------------------------------------------- chr2B_691 AGGCGCAAACAAAATAATCCAGCTGATGATCCTACTAAACAGTTATTGGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CTTTTAAAATGACTTGTAGTGTAAAAAAAGACAACTCTACGGCTATATAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 AATATACTTAGTTTTAGTGCTTCCTCTCTGAGAATATATCGATTCCTGTA chr2B_31 AATATACTTTGTTTTAGTGCTTCCTCTCTGAGAATATATCGATTCCTGTA chr2B_31 AATATACTTTGTTTTAGTGCTTCCTCTCTGAGAATATATCGATTCCTGTA chr2B_31 TCTTATATTTACTGCATGTCATTTTTAAGTTCCATTATTCTGCCCGGCAA chr2D_418 -------------------------------------------------- chr2A_548 TGATAAGATTTCCATAAGAAAAAAGGTGTGTATAGCTGGCCCTCTTAT-- chr2A_676 -------------------------------------------------- chr2B_691 TGATAAGATTTCCATAAGGAAAAAGGTGTGTATAGCTGGCCCTCTTATCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CTCGAGCATTATTCATTTATATCTCAATTCTTTTCCGTCTTGGTCACAAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GTCAAGATGAACAACCATTTACTTGAGT---------------------- chr2B_31 GTCAAGATGAACAACCATTTACTTGAGT---------------------- chr2B_31 GTCAAGATGAACAACCATTTACTTGAGT---------------------- chr2B_31 GATAGGGTTAGTTGCTTAGTTGCAAAGGGAATCTTTCTTAATTACCCTGA chr2D_418 -------------------------------------------------- chr2A_548 -----------ATGGAATGTAGCTTCTTCTTGATGTGTTCCATGTGCTTG chr2A_676 -------------------------------------------------- chr2B_691 TCCTTAGTATGATGAAATGTAGCTTCTTCTTGACACGGTCCATGTGTGGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATGATCATATTTTTTGATGAAAATTTAGAAGTTCATGGCGAGAGGTGAAC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TGTCATTGGCAGTGAATGCACTTTGTGGATTAGTGGAACTTTCCATGTTT chr2D_418 -------------------------------------------------- chr2A_548 ATCTGCGTATGTAAATCTAGGAATTATTGAATTGTTAATT--GTTAGCTT chr2A_676 -------------------------------------------------- chr2B_691 T------TATGTAAATCTAGGAGGTATTGAATTGTTAATTATGTTAGCTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TGTAAAATGAGCTTTGCAGTTCCAACAGTATTTTCCATTAAACATTTGTT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TACAGCACAAAGCGGCTTTGTACTTTTTTCCCCACTGTAAGAAACTGGTT chr2D_418 -------------------------------------------------- chr2A_548 CTGTATGAAGATTGTTATTTATATGCTTGGGACAAAGGTTTTTTTTTATG chr2A_676 -------------------------------------------------- chr2B_691 CTGTATGAAGATTGTCATTAATATGTTTGGGAGATA-GTTTTTATATATG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TATGTAGGCATCTGATAGGTGTGTACAATGTGTTTTTGTTTTAGGCTTCT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TTCCACCTGGAATCTTTGCAGCATCTCATAGCAGAAGTTATTTGTGTGCT chr2D_418 -------------------------------------------------- chr2A_548 TAACCGCATCTCTTTAGAAGTTGGAGCTGATGAAATTGCAAGTGCTTTAG chr2A_676 -------------------------------------------------- chr2B_691 TAATTGCATCTCTATAGAAGTTGGAGT-----------------CTTTAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGTTTTTGCAGAAAGAAAATTTTAAAAGTTCCCCAGCAGAAACCCATCAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TTAGGCAGATGGTAGTTTAGCTCTAGTTAGGGGAATTGTTACTAATTCAA chr2D_418 -------------------------------------------------- chr2A_548 TGGGTTGGAACAAAATAGTTATATTAAAATTTGTAACTTTTGACGTATTG chr2A_676 -------------------------------------------------- chr2B_691 TGTGTTGGAACAACATAG-TATATTAAAATTTGTAAGTTTTGACATATTA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TATGAGACAGGGAAGAGTGAAAAGACACACCAGCGCGGTGTAAAAAAAAT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ACAGGGGGTTTGCAATGCTAGGTGTCAATTGTTACATTAGATCTAAAAAA chr2D_418 -------------------------------------------------- chr2A_548 CAATGCATTGCATGATAGCTTGAAACATGACCAGATGTACTGGCTTGTAT chr2A_676 -------------------------------------------------- chr2B_691 CAATGCATTGCATGGAAGCTTGAAACATGGCCAGATTTACTACTTCGTGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GTGTCCAGACATCAGAAACTTACATAGCAAAATCATTACTGTAAGCCAAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 AGATAGTCTCAACTAACTGTGAAATTTAATAAAAATTTAAATGCTAGGTG chr2D_418 -------------------------------------------------- chr2A_548 CTGCTGCTGGATGTTTTCTCTCTCTTCTAATCCTCTGCATATCTAATTTA chr2A_676 -------------------------------------------------- chr2B_691 CTGGTGCTGGA---TTTCTCTCTCTTCTAATCTTCTGCATTTTTAACTTC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CATATTGGCTTACATGTAGGGGGGAAAAGTATAACGTATTGTCATGGTGT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -TTTTGAAAAGACACTGTTGTCGTCGGTAACTTACCAGTGCATTCGTAGT chr2B_31 -TTTTGAAATGACACTATTGTCGTCGGTAACTTACCAGTGCATTGGTAGT chr2B_31 -TTTTGAAATGACACTATTGTCGTCGGTAACTTACCAGTGCATTGGTAGT chr2B_31 CTTTTGAAAAGCCACTATAATGCCTTACCTAATTCTTTACAGTTTTTTTT chr2D_418 -------------------------------------------------- chr2A_548 ACACAGCTAAAAATGTTGAATCGGATAGCTACAGTGAAGGATGATGGAAC chr2A_676 -------------------------------------------------- chr2B_691 ACACAGCTCAAAATGTTAAATCGAATAGCTACAGTGAAGGATGATGGAAC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GGTTGACACGATGAGCTTCATCTTCACCAGACGCCTTTGTATTCATTAAG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 TTGGTACCTAGCAGG------------------------------ATTCC chr2B_31 TTGGTACCTAGCAGG------------------------------ATTGC chr2B_31 TTGGTACCTAGCAGG------------------------------ATTGC chr2B_31 CCTGATATACTAGCCAGTTCAAGATCCAGCAAGATGACCGAAACCATTGT chr2D_418 -------------------------------------------------- chr2A_548 TGTGGTTGTTAATGTACCAAGTACTCTAGAAGCAACTCCAGTTGATGTTG chr2A_676 -------------------------------------------------- chr2B_691 TGTGGTTGTTAATGTACCAAGTACTCTAGAAGCGACTCCAATTGACGTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TAAGGTCGATCATGGCTTTTCGGAGGTCATTAGAGAAAAATGCATCATGC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 AAAAGCCAGGAAAAGACACTGTAGTCAAGACTTCAACCATTTACTCCCAA chr2B_31 AAAAGCACAGGAACAGACTGG-------------------TTACTGCCAA chr2B_31 AAAAGCACAGGAACAGACTGG-------------------TTACTGCCAA chr2B_31 CAAAGCACTTGAAATGACTGG-------------------ACAGAGAGGT chr2D_418 -------------------------------------------------- chr2A_548 GAGGAGCAGATGGCTATGATGATGTTGTTGTTGAAGAATCATTAGATGGA chr2A_676 -------------------------------------------------- chr2B_691 GAGCAGTGGATGGCTATGAGGATGTTGTTGTTGAAGAATCATTAGATGGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ACCAAAATGCATCATGCACCATTGTGTGATCTCGGATGGGTGCTCCAAAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GAAACAGGAACACGTACTGGTTCCATTCCTGTAAATTGGATAATTAGAAT chr2B_31 GAAACAGGAACCCGGACTGATTCCATTCCTGTAAATTGGATAATTAGAAT chr2B_31 GAAACAGGAACCCGGACTGATTCCATTCCTGTAAATTGGATAATTAGAAT chr2B_31 ATCATCAACAAAGG------------------------------------ chr2D_418 -------------------------------------------------- chr2A_548 TCAGATATACCATACAGACCTCCAATACAGATTGTTATACTTATCGTGGG chr2A_676 -------------------------------------------------- chr2B_691 TCAGATATACCATACAGACCTCCAATACAGATTGTTATACTTATCGTGGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AATGAGGCCCTGTTTGGGATATAGGAACCTAAACCATAGGATTGGAAAAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GTTCAAACTCAGATCTTAAGTTCTCAAATTGGAACGACTTTGGGACATAT chr2B_31 GTTCAAACTCAGATCTTAAGTTCTCAAATTGGAACGGCTTTGGGACATAT chr2B_31 GTTCAAACTCAGATCTTAAGTTCTCAAATTGGAACGGCTTTGGGACATAT chr2B_31 ----------------------------TTGGCGTGGCCTTGGAACATGT chr2D_418 -------------------------------------------------- chr2A_548 TACAAGGGGAGACGTTCAGCCATTTGTTGCAATAGGAAAACGCTTACAGG chr2A_676 -------------------------------------------------- chr2B_691 TACAAGGGGAGACGTTCAGCCATTTGTTGCAATAGGAAAACGCTTACAGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GTTACAAGAATAGAGGAAGATCGTAGCCCTAAAACATAGGAAGAGAAAGC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 ACACAAATCACTACTAAACTAAACTTCCCTGATTCAGAACTTA------- chr2B_31 ACACAAATCAGTACTAAACTAAACTTCCCTGATTCAGAACTTA------- chr2B_31 ACACAAATCAGTACTAAACTAAACTTCCCTGATTCAGAACTTA------- chr2B_31 AAGTTCATCTTTGATTTGTGGGAATGTTGCACTATTTGGTTGCGGGCATA chr2D_418 -------------------------------------------------- chr2A_548 TTAGCCCAAGCTAATATTATTGTTAATCTCATATTATTGTTTGCTAACTC chr2A_676 -------------------------------------------------- chr2B_691 TTAGCCCAAGCTAATATTATTTTTAATCTCATATTATTGTTTGCTAACTC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GGTGGAAAAGTTAAGCGCCATACATTCAGAGAGATCGTAGGGATTGCTGA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TATTTTGAGTCCATCCTGAGTTCTTGAACCTTTGGGCTTTTGCAGTGGCA chr2D_418 -------------------------------------------------- chr2A_548 CGATTAGTTCCATGAGCTTCTCTTCCAGTTTAATGTCATCACATTTATGT chr2A_676 -------------------------------------------------- chr2B_691 CGATTAGTTCCATGAGCTTCTCTTCCAGTTTAATGTCATCATATTTATGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGGAAACCTGGTTGATGGAGTCCTATTACAGAATTCTTTATTCAGGTGCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GAACCAAAAGATTCCATATATTTACTTGACAACTGCCCTCATGACTGGCT chr2D_418 -------------------------------------------------- chr2A_548 TT--TTTAGTATGACAAAGATCAGTTGTCACCTTTATTGTAGGATTATGG chr2A_676 -------------------------------------------------- chr2B_691 TTTTTTTAGTATGACAAAGATAAGTTATCACCTTTATTGTAGGATTATGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TGCAAAGAATTTCGAGCCTCTACCCCATCATGGAGTTTTTTTATTGGTTG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TTTCCTGCAGTGTAAGGCAGTGGTAAGCCTTTGCTACTTGTTACTCTTGG chr2D_418 -------------------------------------------------- chr2A_548 ACACCGTGTGAGATTAGCCACTCATGCTAACTATAAGGAGTTCATACTTA chr2A_676 -------------------------------------------------- chr2B_691 ACACCGTGTGAGATTAGCCACTCATGCTAACTATAAGGAGTTCATACTCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TATGGTAGTTTTCTTAGTCCAAAACATGTGCTCTGACTCAGTTATCCGCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TGGATTGGTGCATGAACCGTATTACCTTTAATTCATATAGTAATTTGGTT chr2D_418 -------------------------------------------------- chr2A_548 CAGCTGGGCTGGAGTTTTTTCCACTGGGTGGAGACCCAAAAGTACTTGCT chr2A_676 -------------------------------------------------- chr2B_691 CAGCTGGGCTGGAGTTTTTTCCACTGGGTGGAGATCCAAAAGTACTTGCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AAAACATGAGATTTGGCTGGATGATTATGTTTTCCGTGAAAAGTATAGGA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ATCATCAATCAATTTTGAACGTTTCCTATTTTTGTAAAACTAATTGACAA chr2D_418 -------------------------------------------------- chr2A_548 GAATGTATGTTTTTTAGTGATTATTTTTTTCTAACTTCTATATCAGATGA chr2A_676 -------------------------------------------------- chr2B_691 GAATGTATGTTTTTTGGTGATTATTTTTTTCTAACTTCCATATCAGATGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TAGCTGACCTTTCCGGAGGGATTGGCAATGCCATTCCTTTGAACCGAACA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ACAATTTCCATCGGGCATACTTAAGAAAATCTGGTGAAATAACTCCAGTG chr2D_418 -------------------------------------------------- chr2A_548 ATATTAATATTTTTGCTATATTCACTCTGAGCAGACATGGTGAAGAACAA chr2A_676 -------------------------------------------------- chr2B_691 AGATTAATATTTTTGCTACATTCACTTCGAGCAGACATGGTGAAGAATAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GGCTCACAGACAAAATTTCCACAGGAAACCAGTACCTGTTCCATTCCTTT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CGGCCACCATGGTGCTAATAGTGTCTGTTTATTCTGTTGAGAGGAGGCCT chr2D_418 -------------------------------------------------- chr2A_548 AGGTTTCCTACCTTCAGGCCCATCAGAAATTCCTGTTCAAAGAAAACAAA chr2A_676 -------------------------------------------------- chr2B_691 AGGGTTCCTACCTTCAGGCCCATCAGAAATTCCTGTTCAAAGAAAACAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GAAATTCCTTTGAAGCGAACACAGTCTGAATGTGAAGAAAGAACTCACCT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 ------TTTATAACTCACTAGTTTGTATGATCTCCTATTAGTAAAATTAC chr2B_31 ------TTTATAACTCACAA------------------------------ chr2B_31 ------TTTATAACTCACAA------------------------------ chr2B_31 CACACTTTTATACCTCACAGGTACACCATGGTGGTGCTGGAACGACGGCT chr2D_418 -------------------------------------------------- chr2A_548 TGAAAGAAATTATATTTTCCCTACTGCCTGCATGCAAGGATCCTGACCCT chr2A_676 -------------------------------------------------- chr2B_691 TGAAAGAAATTATATTTTCCCTACTGCCTGCATGCAAGGATCCTGACCCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATCTGCCAACAATGGATTTTATAGGGAAAAACAATATGATTGCACAATGG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ----------------------T--------------------------- chr2B_13 AGCAAACATGTATTTTCCCATGTGATTTTCAGGTGAAAGAAAAGGTTGTG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GCTGGTCTGAAAGCAGCGGTACT--------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GATACCGGTATTGCTTTCAAAGTGGATGCAATTATCGCGAACCCACCAGC chr2A_676 -------------------------------------------------- chr2B_691 GATACCGGTATTGCTTTCAAAGTGGATGCAATTATTGCGAACCCACCAGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TGATTGCTGGATTTGTAGTAAGTTAAGGGGTTTGCATATTGGCTTAGCTG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GAGCTTGCCAAGGCCATGGAATCAGAAGACGGTGTAACGGGTGCAGTCAG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ATATGGTCAGTATATTTTTTGTTTACTTTGAATTATTTTTTATGGCTGAA chr2A_676 -------------------------------------------------- chr2B_691 ATATGGTCAGTATA--TTTTGTTTACTTTGAATTATTTTTTATGACTGAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TAACTTATACTCAATATGTTCATTAATATAAGACGTTTTGACACTTTAAT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GGCATTCCTCAAACACCTGCCCTGTAAAACGGATGAAAATACACCCCGAC chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ACACAAAGCTCATTTATTAATAGTAAACAACCTCAATAGCAAACCGTAAA chr2A_676 -------------------------------------------------- chr2B_691 ACACAAAGCTCATTTATTAATAGTAAACAACCTCAGTAGCAAACCGTAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TTTAGCTGAGGAACCATAGCAATTGCGGATTAGGTGCCCCTTGTTCCGCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 CTACGCACGGCTTTCTAGAGTTCCTAGGCCTAGTAAGTAAATGTTTGGTG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ATATCAGTTCTGGATAGGATGAGGGTCATCTTATGATGGTACCTCAAAAA chr2A_676 -------------------------------------------------- chr2B_691 ATATCAGTTCTAGACAGGATGAGGGTCATCTTATGATCGTGCCTCCAAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CATGAACGGCTGTCCCTTGCTCCCTTATTGCACATCAAGTGTTCTATAAG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 TGCCGTTAGGTGCTGGTCAGATGCAGCTATACCACTCCTCCATGCTGAAA chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TCTTGGTTATAATGATTGCAAGGTGCAAAATACTATTCTACATGGTTCTT chr2A_676 -------------------------------------------------- chr2B_691 TCTTGGTTATAATGAGTACAAGGTGCAAAATACTATTCTACATGGTTCTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CCGATATTTTACTCTCTAAATTGGTCAAAGTTTTACTTTCTAGGAAAAAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GATGAGTGTAAAAAAGCCTCTTGGGTGACCGCTATGCCATTGTGTGCGAT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ACATAGGATGGGGATTGAATTCTTCCACATGATCATAAGATTCTGTAATA chr2A_676 -------------------------------------------------- chr2B_691 ATATAGGATCGGGATTGAATTCTCCCACATGATCATAAGATTCTGTAATA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATCTATTTATTACTTCCTTCGTCCTGCAATATAAGTGTTTTGCAAGGTAT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 AAGAATGTGGAAGCCAAATGTTAGAAGTTGATGTACATGCATGCGACCAG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTGTTCGAATCTTATCAACCTCGCTCATGCACAATTTATTCTTACAACAT chr2A_676 -------------------------------------------------- chr2B_691 TTGTTTGAATCCTATCAACCTCACTCATGCACAATTTATTCTTACAACAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GTACATGAAATGAAGGAAATACACTTTTTTCGAGTGGACCCGCTTGCCTC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -----------------------------TATATGTGTGTTGTGTAAAGA chr2D_1 -----------------------------TATATGTGTGTTGTGTAAAGA chr2B_2 -----------------------------TATATGTGTGTTGTGTAAAGA chr2A_4 -----------------------------TATATGTGTGTTTTGTAAAAA chr2B_5 -----------------------------TGTATGTTTGTTGTGTACAAA chr2D_5 -------------------------------------------------- chr2B_13 GATCCTGTGATTTATCGTTTTGCGTTTTTTGTATGTGTGTTGTGTAAAGA chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TCAGTTTGGTTATTTTCTGATTTGAGATTAATTTCATTAAAGGACTGGAA chr2A_676 -------------------------------------------------- chr2B_691 TCAGTTTGGTTATTTTCTGATTTGAGATTAATTTCAATAAAGGACTGGAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ACTTTTTCATCATCCACTTGTTTCGTCCCATCCTTGGTTTATGCTTTTAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GTACTTGTCTGGTGATT--------------------------------- chr2D_1 GTACTTTTCTGGTGATT--------------------------------- chr2B_2 GTACTTGTCTGGTGATT--------------------------------- chr2A_4 GTACTTGTCTGGTGATT--------------------------------- chr2B_5 GTACTTGTCTGGTGATT--------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GTACTTGTCTGGTGATTTGATACATAATTTTGGTGTGGTTGCAACCTTGG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TATCACCAAAGAAAACTAGCCATGGACAGGGGCGCGTGGAAGCTAGCTAT chr2A_676 -------------------------------------------------- chr2B_691 TATCACCAAAGAAAACTAGCCAGGGACAGGGGCGCGTGGAAGCTAGCTAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATAACTCTTATGCAAGAAAACTTGGTCACATCCTCCAAGATGTCATCATG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 TCTGCAGCAACTGATGATCTCACATGTATGACCAGACAACCTATGTATAT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CCATGTGCCAGAACCATGAGTTGGTTGCGAGATCTTATGGGTTTCAGCTC chr2A_676 -------------------------------------------------- chr2B_691 CCATGTGCCAGAACCATGAGTTGGTTGCGAGATCTTATGGGTTTCAGCTC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GTCCATGTAAACCTTCATTGTGGCAATGAATCAATTGAGCGTGCTCTACG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GGAAAACTTCAGAGTGCAGATTAGTTCAGTTAATCCTTTTGTAGTTTACG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TAGCCTACCCCAACTTGTTTGGGACTAAAAGGCTTCGTTGTTGTTGTTGT chr2A_676 -------------------------------------------------- chr2B_691 TAGCCTACCCCAACTTGTTTGGGACTAAAAGGCTTCGTTGTTGTTGTTGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGTTGAGATTTTAATACCAATGTCCTTTCATATAGCTTTTAGAAAAACCT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 ACATGGTTTAATTTGGAACGGCCAGACATGTCATGGTTATAATTATGTTT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTTGTTGAGATTAATTTCATTGCAGACCAGTTTTGTAGTTATAGATCAAT chr2A_676 -------------------------------------------------- chr2B_691 GTTGTTGAGATTAATTTCATTGCAGACCAGTTTTGTAGAGATAGATCTAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GGTCCCCCGGCAGCATCTTGGACATGTTGCTGCTGCATGTGATAGCCGCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 CAAGTTTTTCCTTGTTCTACTACAGGTCTTCAGGTTAAGATAAAGTAGAG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTATTATTTATGCTTTAGCATGTTCATGGTGTGCTTTGTCTTGTGCCATA chr2A_676 -------------------------------------------------- chr2B_691 TTATTATTTATGCTTTAGCATGTTCATGGTGTGCTTTGTCTTGTGCCATA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGGAGAACGTTCACTTGTTAATGAATCTCCACGACAACGCTTTCAAGTCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ----------------------------------------------CTCT chr2B_13 ACCTGTGACCTCATGCACAGGGGAAAGTAATTCTGTCACCCCAGTACTTT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ----------------------------------------------CTCT chr2D_418 -------------------------------------------------- chr2A_548 CTAATAACAGCTTTGCTTAGTAATGTAAACTCG--TACAGTTATCTTTTG chr2A_676 -------------------------------------------------- chr2B_691 CTGATAACAGCTTTGCTTTTGTAATTGTAAACTCATACAGTTATCTTTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TTTATTACGCAGGAAAACCATCGTGTCATGGTCAAAGTCTTTGGATACAT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTCTCTCAGT---------------------------------------- chr2B_13 TTTTCTCAGT---------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr2D_418 -------------------------------------------------- chr2A_548 GTTTCACCTTTCCTCTAGAGGCATCTCGTTTCTGCCAGGGCACATGTTTG chr2A_676 -------------------------------------------------- chr2B_691 GTTTCACCTTTCCTCTAGAGGCATCTCGTTTCTGCCAGGGCACATGTTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATAAACTTTCGTTATCGCAATGGACTAATCAGGTGTTCCACTTGAGCTGG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr2D_418 -------------------------------------------------- chr2A_548 GTTAATTTCTGTTAGTCTTCCATTCTTGGAATTCAAGATTACGAATGGTA chr2A_676 -------------------------------------------------- chr2B_691 GTTAATTTCTGTT-GTTTTCCATTCTTAGAATTCAAGATTACGAATGATA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GTGGATGGTTACTGCTGTGACTAAGGCTACCCATAGTGAGAACAACATAG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr2D_418 -------------------------------------------------- chr2A_548 AAGAGAAAAAGAAAGAACAAAGAGGAATAGTCATAATCTGAATGAACTGC chr2A_676 -------------------------------------------------- chr2B_691 AAGAGAAAAAGAAAGAACAAAGAGGAATAGTCATAATCTGAATGAACTGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 GTAGTGATATAGATGCCACCTAAGCTTAAAAATATATGATGTGGCAGCTA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr2D_418 -------------------------------------------------- chr2A_548 ACCTCATAACTTCATGCATAAATTTGATTTATACAACCAAAATCGGACCA chr2A_676 -------------------------------------------------- chr2B_691 ACCTCATGACTTCATGCATAAATTTGATTTATACGACCAAAATCGGACCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATTAATGAGAGAGAAAAATAGAGTAACATAGGTAGTTACCATAACATAGC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr2D_418 -------------------------------------------------- chr2A_548 GCTCTCTTTTTTATCAAGATTACTATATCTTATGACAATAAACACTCACC chr2A_676 -------------------------------------------------- chr2B_691 GCTCTCTTTTTTATTGAGATTACTATATCTTATGACAATAAACACTCACC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATTTCCCAATAAAGGATGAGTATATAAGAAAATAAATGAGACCATATATG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr2D_418 -------------------------------------------------- chr2A_548 CAGTTTCTCTGTATGTGAAAATCATCAAAAGGACATCTTATCTTGAGGGG chr2A_676 -------------------------------------------------- chr2B_691 CACTTTCTCTGTATGTGAAAATCATCAAAAGGACATCTTATCTTGAGGGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATACTATCTTTATATTACTTTGCTTTATGAAGATGATAATATAGACTAGT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ------------------TTGCACTGCGTT-------------------- chr2B_13 ------------------TTCCAAAAATGTGAAATAATTCATGGTTGTAA chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 NNNNNNNNTCTCTCTCAGTTGCATTACGTT-------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGAGTTAACATTTAAAACCTTGACATCACTACGTAAACCTACCAACATGG chr2A_676 -------------------------------------------------- chr2B_691 TGAGTTAACATTTAAAACCTTTATATCACTACGTAAACCTACCAACATGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AACATATGCATGTTAATAGACTAAGCTACTCCCGACTATGACTAACCTAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 ATTAGGCTATATCATATGCATTTGCAAAAACTTTGAAAAATATGAATTTT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGAAATCATCC--TAAAAACCAGATCCATGTTATAATTTGGTCTGCTCAA chr2A_676 -------------------------------------------------- chr2B_691 TGAAATCATCCCCTAAAAACCAGATCCATGTTATAATTTGGTCTGCTCAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CGACGCGGTAAGCTCCATACCATGGTCAGCAGCGGGTCCGCTGAGGTTAG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GTGACTTGTACAGAAAATACAACTCTATGGATATATTACTTGAGGTTTGT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTCGAAGGCGTTAAATGCTGGTTAAATTAGAGAGGGCTATACAGAACCAT chr2A_676 -------------------------------------------------- chr2B_691 GTCAAAGGCGTTAAATGCTGGTTAAATTAGAGAGTGCTATACAGAACCAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGCTTTGAGTGTGAAGCTACGACTATTCTTGGTTACCCCGGTGAGAAGCT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 TCATTTATATACCTATTTTTCTTGTCTAAGTCGCAAATTGATCATATTTT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CCACAAAGTAGGTAGTGGAGTATGGACCTTTTCCTCTTTCCAAATAGGGC chr2A_676 -------------------------------------------------- chr2B_691 CCACAA-GTAGGTAGTGGAGTATGGACCTTTTCCTCTTTCCAAATAGGGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGCTGGTGTGAACCATGCCTCTGGACGCTGACATCCTAGCGATTCAAATT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ------------------------------------------------AC chr2B_13 TGTAGAAATTTGAGTTTTATAAGCTCATGGTGAGAGGTGAACTGGAGAAC chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ------------------------------------------------AC chr2D_418 -------------------------------------------------- chr2A_548 ATGGCAATTGTTAGGAGATGAAATGATACTAAAACCTTTTAGTTTCAGCT chr2A_676 -------------------------------------------------- chr2B_691 ATGGCAATTGTTAGGAGATGAAATTATACTAAAACCTTTTAGTTTCAGCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CTCCGTTCTCAGTCAAGAAGAGCGTGTCTGTGACCTTGCCGGCTCGTTAA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GAGCTATACATCACGTTGCCACATCACTTCCACACTATTCTCTATG---- chr2B_13 GAGCTTTTCACTTCCAACCGTATTTTGCATCTGATAGGTGCATATTATGT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GAGCTATTCATCACGATGCCACATGACTTCCACACTATTCGCGATG---- chr2D_418 -------------------------------------------------- chr2A_548 ATTCGACTGATGGCAAAACCACAATGGAGTGG-TCTCTGTTCCAACTTGT chr2A_676 -------------------------------------------------- chr2B_691 ATTCGACTGATGGCAAAACCACAATGGAGTGGTTCTCTGTTTCAACTTGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TCACCACCAGCTGGTCATTTGATACACCATTTTCATGTGGTTGCAGCAAC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ---------------------------------------CAAATACAGTA chr2B_13 GTATTTGTTCCAGGCTTCTTCTTTTTCCAGCAAAGAAAACATATAAAATG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ---------------------------------------CAAATACAGTA chr2D_418 -------------------------------------------------- chr2A_548 AGTTTTTAAATGTGAGGGTTTTGGTCCATGCTGAATGGTGTGATTTTCCA chr2A_676 -------------------------------------------------- chr2B_691 AGTTTTTAAATGTGAGGGTTTTGGTCCATGCTGAATGGTGTGATTTTCCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TGATGATCTCTCATGTAGGACCAGACAATCTATTTATCAGGAAAACTTCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TAAC---------------------------------------------- chr2B_13 TCCC---------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CCCCCTCCCATCCATACTAATTGTCGCTGCTTTAGTACTAAAGGAGCAAC chr2D_418 -------------------------------------------------- chr2A_548 TACGCGTCCATATATTATGAGGTCTGTTGTGTCCCTTATGTATTAATGTG chr2A_676 -------------------------------------------------- chr2B_691 TACGCGTCCATATATTATGAGGTCTGTTGTGTCCCTTATGTGTTAAGTGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AAAAGGGCAGATCAGTTCAATTACTCTTTCGCATTTTGAACTATGTTGTG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ---------------------------TTCTTTAAGCCAATTATTGTTAG chr2B_13 ---------------------------CAGTTGAAACCCATCATTATCAG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 AATTAATATGGATCGGAGGGAGTATAATTTTTTAAGCCAATTATTGTTAG chr2D_418 -------------------------------------------------- chr2A_548 TGCCTTTCTATCACTAAATTTT------GCATATTTTCCCCTTTTATGAT chr2A_676 -------------------------------------------------- chr2B_691 A-CCTTTCTATCACTAAATTTTATTTTTGCATATTTTCCCCTTTTATGAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATTTGAAACGGCAAGAAATGTCATATTTATAATATTTGTTTCAAGCTCTT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GTAGAGTTAGAAT------------------------------------- chr2B_13 GCAAAGGGCTCTATTAACATGGAAAGATCCTCAAAAGATCTTGCTGAGAC chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GTAGAGTTAGAAT------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTGGATAAGCAACTTGATTACCATATTTTACCATTACAAGTATGTGATCC chr2A_676 -------------------------------------------------- chr2B_691 CTGGATAAGCAACTTGATTACCATATTTTACCATTACAACTATGTCATCC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CCTTGTTCGGCTACGGGGCTTCATTTTAAAACAAATTAAGTAGAAACCTC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 ATCTATAGCGTACACAACCAAATTATTACAGTGAGCCAAACAGATTGACT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGCTGACCTCAGTATTTATTCAGGACATACACATGTGGCAGAGGCACTAA chr2A_676 -------------------------------------------------- chr2B_691 TGCTGACCTCAGTATTTATTCAGGACATACACATGTGGCAGAGGCACTAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TGACATCATACAGATGAAAGTAATAATTATTTTTGGTTTGTTCAATTTTT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ---------------------CAGCTGAAAACAATTCCTGTAATTAACTT chr2B_13 TATTGAAAAGGAAAAAGATGGCAGCGGAAAAGATAGCAAGTTATCAACAT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ---------------------CAGCTGAAAACAATTCCTG---------- chr2D_418 -------------------------------------------------- chr2A_548 AAGTACCCATTCATATATTCTTTACCATGCCATGGACGTGAGTCATTTTT chr2A_676 -------------------------------------------------- chr2B_691 AAGTACCCATTCATATATTCTTTACCATGCCATGGACGTGAGTCATTTTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TGTAACTATGTGTAGTACTCTCTATTAGTGCACCTTCTTGTGACTTGTGC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ATTACTATTATTAGCTGAAAACAATTCCTGTAATGAACTGTTAATAATAG chr2B_13 ATTGCCATGCCGTGGTCAAAGCAATGAGCTTCAACTTCATCGACTGCCTT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTTCTGCTTCCTCTTTGAAAGACAGTTGCTGATGAATATTGTCATTTGGA chr2A_676 -------------------------------------------------- chr2B_691 GTTCTGCTTCCTCTTTGAAAGACAGTTGCTGATGAATACTGTCATTTGGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AAAAAGATAACTTACATCGTGAATGATCATATTTTTTTTATGAAATCTTC SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTT--------------------------------------CAATGAGAC chr2B_13 TTTTGCCTTAATAATGTATATAAGGTCATTGCTTCAGTTGTCCATAGAGA chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------ATCAGGGCATGCCTGCAGTTGCCAATGAGAT chr2D_418 -------------------------------------------------- chr2A_548 GATCTAACATATGCTGCTTGTTCAGGCCAACTAGCGAATTTCCTCATCCT chr2A_676 -------------------------------------------------- chr2B_691 GATCTAACATATGCTGCTTGTTCAGGCCAACTAGTGAATTTCCTCATCCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TAAGTTCGTGCTGGGAAGAACTGGATTTTTTTTAAAATTCTCATGAAATT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AACTATTATTAGCAGCATTATCTCTGTAATGAACTTATT----------- chr2B_13 AAAATGCCTCT--------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 AACTTTTATTAGCAGCATTTTCTCTGTATTTTTTTGAGGGAAACAGCAGG chr2D_418 -------------------------------------------------- chr2A_548 CTTTCTCGAGTGAAAACATCAGCTGGATATCGAGTGAGTTCACATCGTAC chr2A_676 -------------------------------------------------- chr2B_691 CTTTCTCGAGTGAAAACATCAGCTGGATATCGAGTGAGTTCACATTGTAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TTTGTACACAGGCATCAGGCAGGTGTGTCCAATGTTTTTTCGTACATGCA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ACTCTGCTGCGTATTTTTATTAATTTTAAATAAATGAGAGGCAAGTGTTT chr2D_418 -------------------------------------------------- chr2A_548 TTACTTATTTGTTCTGGGTATCTGAGTGACTAATGTGAAGCTTTTCTAAA chr2A_676 -------------------------------------------------- chr2B_691 TTACTTATTTGTTCTGGGTATC-GAGTGACTAATGTGAAGCTTTTCTAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TCAAATTTTTCAAATGATCAAAATATCAAAGAAAAAACGGCCCTAGCTAG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ------------------------------------ACTATTATAACAAG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TACGAAAGCATAAAAAGGAAATAAAGACTATACAGAACTCTTATAACTAG chr2D_418 -------------------------------------------------- chr2A_548 TCATTGCAAATTTCATGAAAGGGAACAGAAAAATAGGTACATGTCGAAAT chr2A_676 -------------------------------------------------- chr2B_691 TCATTGCAAATTTCATGAAAAGGAACACAAAAATCGGTACATGTGGAAAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TAGAAGGTTGAATATCTCTAACATCATCTTGTTTACAAATTATCTCAACA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTAAGCAACTGGCAACTATGACCTGATCCTAATGTTTGCTATGTT-GGAC chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CTAAGCAACTGGCAACTAGCACCTGCTCATAATGTTTGCTATTTTTGGAC chr2D_418 -------------------------------------------------- chr2A_548 TATTTTAAGAAAGGAAGAAATAAAAAAAGACTT-----CCATCTGTTATT chr2A_676 -------------------------------------------------- chr2B_691 TATTTTAAGAAAGAAAGAAATAAAGAAGAAAAACTTTGCCATCTGTTATT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CCCAACTCTTTGAAGACTTTCTCTTGTGCATGGTT--------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CAGTTATTAAATTTAGTTTAGTTCCAACCCACTGTTTTGGTG-------- chr2B_13 -----------TTTACTTTAGTTACTTCACCGTAGACATCATGCATCGCT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CAGTTCTTAGATTTAGTTTAGTTCTAACCCACAGTTTGGGTGA------- chr2D_418 -------------------------------------------------- chr2A_548 ATTTGTCTTCCACCTTGTCTATGGATGTGTTTTAGGTTTGAGGTCCATCT chr2A_676 -------------------------------------------------- chr2B_691 ATTTGTCTTCCACCTTGTCTATGGATGTG-TTTAAGTTTGAGGTCCATCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 GGGCGATCCTTCGGTGATTCCGCTGAGCATAATAAGCCAAGTCTAAGGAG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GATCTTACGGAGTAGTACATCACTAGGGTGTTTTCCTTTTTGCTGTAGTG chr2A_676 -------------------------------------------------- chr2B_691 GATCGTATGGAGTAGTACATCACTAGGGTGTTTTCTTTTTTGCTGTAGTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 CCGGAGAGCACATATATCCTTCAGTGCAAATGTGTTGTGTTCTTGCAAGT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AATCCCAATTGAGTAGTTCACGCACATATGCCCGAACCTTGGCTATATAT chr2A_676 -------------------------------------------------- chr2B_691 AATCCCAATTGAGTAGTTCACGCACATATGCATGAACCTTGGTTATATAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 TCTGGGTATGATCGACACACTGATCCCCCGTCTCTGAAGTAAGATCGGGG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAAATCTATAGTTGGTCACGTTGTTTCATGCAACAAAAATTAAGAAAACC chr2A_676 -------------------------------------------------- chr2B_691 GAAATCTATAGT-GGTCACGTTGTTTCATGCTATAAAAATTAAGAAAACC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 TGAAGAATGTCTTGTGTTCGTGAAAGCGATGCATTTACGTACTTGCGGAG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TACAGTGTTAGTACTTTTGAAGCATTGAGGCAAGGCTGTTTTT---TTAA chr2A_676 -------------------------------------------------- chr2B_691 TACAGTGTTAGTACTTTCGAAGCATTGAGGCAAGGCTGTTTTTTTTTTAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ------------------------ATTTGTAGTGTCCTACAACTATTGTA chr2B_13 CGTCAAGCCATCATTGAACTCTTCATTAGTAGTGTCCTACAACTATTGTA chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 --------------------------TTTTAGTGTCCTACAACAATTGTA chr2D_418 -------------------------------------------------- chr2A_548 TTCGTCACTTGTCAATAAAAGTGAAAGCAATATTGCAAAACATAGACCAA chr2A_676 -------------------------------------------------- chr2B_691 TTCGTCACGTGTCAATGAAAGTGAAATCGATATTGCAAAACATAGAGCAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CCATTCTTTGGCAACCAACCATTCTGGGGAGAGCGGGTCCATGCTAGAGG chr2B_13 CCTTTCTTTGGCGACCAACCATTCTGGGGTGAGCGGGTGCATGCTAGAGG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CCTTTCTTTGGTGACCAACCTTTCTGGGGAGAGCGGGTGCATGCTAGAGG chr2D_418 -------------------------------------------------- chr2A_548 ATCCGTATGTTTCTTTCATCCATAAAATTGTTCTGATACCTTGTGTTTGT chr2A_676 -------------------------------------------------- chr2B_691 ATCCGTATGTTTCTTTCATCCATAAAATTGCTCTGATACCTCGTGTTTGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GATAGGTCCTTTGCCAATACCGGTTGATCAATTCAATTTGCAGAAATTAG chr2B_13 GGTAGGGCCTTCGCCTATACCGGTTGATCAATTCACTTTGCAGAAGTTGG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GG------------------------------------------------ chr2D_418 -------------------------------------------------- chr2A_548 CTGCATTTGCAGCTTTCTTACCAAATTGTTGACTCTATGATTTGGCTTGG chr2A_676 -------------------------------------------------- chr2B_691 CTGCATTTGCAGCTTTCTTACCAAATTGTTGACTCTATGATTTGGCTTGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTGATGCTATAAAATTCATGTTGGATCCAGAGGTAACTCTACAAATTCTT chr2B_13 TTGATGCTATAAAATTCATGTTGGATCCAGAGGTAACTCTACAACTTTTT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GATACGTGATATGATAAACGAATTCAGGAAAAAGAAGTTGAAGCTGCGTC chr2A_676 -------------------------------------------------- chr2B_691 GATACGTGATATGATAAACGAATTCAGGAAAAAGAAGTTGAAGCTGCGTC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TGCGCTTGGGCAGATGTTACTTTTTCTTTTGCTTCATATGGGAAGCCCTC chr2B_13 TGCGCTTGGGCAGATGAGACTTTTTCTTTTGTTTCATATCGC-------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CAGTAACATACCTAAGTGGTGCACAGGGTTCTGGAAGTGACATTCCTCAT chr2A_676 -------------------------------------------------- chr2B_691 CAGTAACATACCTAAGTGGTGCACAGGGTTCTGGAAGTGACATTCCTCAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GCCCCCTTGCGTCGCCCCCGCGGGTGACCCGGGGGGAAACCCTAGCCGCT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGATACATCTGGAGCCCTCACCTTGTCCCAAAACCGAAAGGTGCTTGATT chr2A_676 -------------------------------------------------- chr2B_691 GGATACATCTGGAGCCCTCACCTTGTCCCAAAACCGAAAGGTGCTTGATT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CCCTCTCGGCCTCCTCCGCTTCTCCCCATCCTCGCCGCCGTCCGCAGCGC chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CATATTAATTTGAGCTGAAAGTAGACCATGCTTAACCTTGTCGTTCTTGA chr2A_676 -------------------------------------------------- chr2B_691 CATATTAATTTGAGCTGAAACTAGACCATGCTTAACCTTGTCTTTCTTGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CGCGGGGCGAAGCCTGGCCGGCAGGGTGGCGGCAGGGCTTCTCCTCACCC chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTGTGTCAACTGCCAATTTGCCAATTGCCAATTTGTTCTTAATATGGTTG chr2A_676 -------------------------------------------------- chr2B_691 TTGTTTCAATTGCCAATTTGCCAAAGTTAAAAGTAATTT--ATATGGTCG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTTCCATCTCGGCTGGCGCGGGGCAACAAGAACGGGAGGTGCGCCGGGTG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AATGATCTTGTTTCTATCCCATTTTACAAAACACAATATAGGGAAAGTCA chr2A_676 -------------------------------------------------- chr2B_691 AATGATCTTGTTTCTATCCCATTTTACAAAACAGAATAAAGGCAAAGTCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AGCGTGGGTCCCGGCAGCACGACGGGCGAGTCACCTGTATAGTCGTGCGC chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AGATAATACCGGGTTCATTTGGTCTTATCTTGTATTTCTCCCATTGCATT chr2A_676 -------------------------------------------------- chr2B_691 AGATAGTAACAGGTTCATTTGG-----TCTTGTGTTTCTCCCATTGCATC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AGCGCGGCGGCGGCGGCCTGCTTGTCGCGAGGTGGTGGCTGCGTTGGATA chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTTTTGCTGATATTTATAAGAATTGGACGTGGTAAGTTAACTAGCTAATG chr2A_676 -------------------------------------------------- chr2B_691 CTTTTGCTAGTATTTAGAAGAATTGGACGTGGTAAGTTAACTAGCTGATG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CGACCGGTGGTCGTGGGTGCCACCGGATCCAGATCAGATCCATCTGGATC chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTTGACACCAGTGATGTTGCATACTCGAGCCATTGCAGCACTCCTTCAGA chr2A_676 -------------------------------------------------- chr2B_691 GTTGACACCAGTGATGTTGCATACTCGAGTCATTGCAGCACTCCTTCAGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTTTCTTTGGACTTCGTCGGCCGCCGCGGGGTGGTGGGGGTCGTCGCTTG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTTGTCTATACTATGGCAAGCTTAAAATTTTGGGTGCAACTAGCTGAGTG chr2A_676 -------------------------------------------------- chr2B_691 CTTGTCTATATTATGGCAAGCTTAAATTTTTGGGTGC-------TGAGCG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CCAGATCAGATCGTTGGATTTGGCGTCTGGAGTTCTACGTTGGGTTCTTC chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTTGCATCTCAATTTCCTCTTTACTGCAAGCTCGCAGATTACAATTTCAG chr2A_676 -------------------------------------------------- chr2B_691 GTTGCATCGCAATTGCCTCTTTACTACAAGCTAGCAGATTGAAATTTCAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TCGGTCCTCCTTCCTGGTGGGCTGAGCCCCATGGCTCTTTCATCTCTGCA chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAAATGCTGTTC---AAAATTTAAAATTATAACGAAGTGCTTTGTACTTG chr2A_676 -------------------------------------------------- chr2B_691 GAAATGCTGTTATTTAAAATTTAAAATTAGAAGGAAGTGCTTAGTACTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GGTTTTGGTTCATGGCTAGTTGCCGGATCCGGAGCAGATGGAGGTTTGGT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTAGAATATGTTCATGTCTTATCACTGCTAATTATTTAAAGAGCTCCTAT chr2A_676 -------------------------------------------------- chr2B_691 CTAGAATATGTGCATATCTTATCACTGCTAATTATTTGAGGAGCTTCTAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GGTATGGGATGGGACCGGAGGAAACTTTGCTCGGCTTGTTCAGCCCGGCA chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AATTTGTGTTCGAAATTATAACTGCAGTTGTGAATTGTGGAGTAAATCAT chr2A_676 -------------------------------------------------- chr2B_691 AATTCGTGTTCGAGATTATAACTGCAGTTATGAATTGTGGAGTAAATTAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TCGGCGACGTCACTCGACGCCGTTATCCTCCCTGGAGGCGAAGCTGAGGT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGAGAAAACTATTGCATTGGAATTTTCAGCTGTTGTTATTGCTAATGGTT chr2A_676 -------------------------------------------------- chr2B_691 TGAGAAAACTATTGCATTGGATTTTTCAGATGTTGTTGTTGCTAATGGTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTGTCCTATCCACCCCCAGATCCCTCCCGAATGAAAGTCCAAAATCTAGT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGTGGCTCAATGTTAAAAGTTGTCATCTATTTGAATGCAGACTGGGGCCC chr2A_676 -------------------------------------------------- chr2B_691 TGTGGCTCAATGTTAAAATTTGTCATCTATTTGAATGCAGACTGGGGCCC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTGGATTGAGCGGCTGCGGCGTCCTGCGCATCGTATCCTCCATGGAGGCG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CAAGATCGATGTTGTTGGATTTTGCTTCCTCGATCTTGCGTCTGATTACG chr2A_676 -------------------------------------------------- chr2B_691 CAAGATCGATGTTGTTGGATTTTGCTTTCTCGATCTTGCGTCTGATTACG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TCGTTTGGGGAGGACGTCATGTTTAGGGGAGAGATGCTGCCGGTGGTGGG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TACCACCTGAAGAACTTGTGAAATGGCTTGAAGCGGGCGACAAACCCATT chr2A_676 -------------------------------------------------- chr2B_691 TACCACCTGAAGAACTTGTGAAATGGCTTGAAGCGGGTGACAAACCCATT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTCCACGTGGCTCCAGCAGTGGCGACGGTTGACGGTGTGACGTTGTATCT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTTTCTTATATTT chr2A_676 -------------------------------------------------- chr2B_691 TATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTTTCTTATATTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ACCGCGTCGATGACGACGTGTTTTGGTGGCATGGTGCAGGTGGATATCTT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ACTGCATGTTGGTTTTAAGTTCCAATATTCCAATTCTGATATGGTGCATT chr2A_676 -------------------------------------------------- chr2B_691 ACTGCATGTTGGTTTTAAGTTCCAATATTCCAATTCTGATATGGTGCATT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CGACGAATGTGGCTGGATGGTCGAGCGCAGGGCGGGGGCACTATCTGGCG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ATTTGACCTGCTCTGTTTAACTTATTGTACTGATATGGTGCAAAACAGGG chr2A_676 -------------------------------------------------- chr2B_691 ATTTGACCTGCTCTGTTTAACTTATTGTACTGATATGGTGCAAAACAGGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CCATAGTGGCGTCGACGGCAGGCTGCAAGGTTTGTGTCAGTCCCTGCTCT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTAGTTATGTAGTTGCGTAGCAGATCTTTCTTGATTACCCTGATGCCATT chr2A_676 -------------------------------------------------- chr2B_691 TTAGTTATGTAGTTGCATAGCGGATCTTTCTTGATTACCCTGATGCCATT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AGAGATGGATCAGTGGAAGACGGCGGTGGCGGGCTCGGTGAGTGCGCCAG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGCAGTGAATGCACTTTGTGGATTAGTGAAACTCTTCATGTTTTACAGCA chr2A_676 -------------------------------------------------- chr2B_691 GGCAGTG-ATGCACTTTGTGGATTAGTGAAACTCTTCATGTTTTACAGCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ACCGGTATGTAACCCAGTCCCAGTTTGTGGCTGGGATGGGGCAGCCAACA chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAAAGCGACTTTGCACATGTTTTTTTT-CACTACCTACAGTAGTAATAAG chr2A_676 -------------------------------------------------- chr2B_691 GAAAGCGACTTTGCACATGCTTTTTTTTCACTACCTATAGTAGTAACAAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTAGATGTTAGGTCCTGGTGTGATGTCTGCTTGGTATTAGCGGACATTCG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AAGCTGGTTTGCCACTTGGAATCTTTGTAGCATCTCACAGCAGAAGAAGT chr2A_676 -------------------------------------------------- chr2B_691 AAGCTGGTTTGCCACTTGGAATCTTTGTAGCATCTCACAGCAGAAGAAGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GCACCCCTACATCAAGGGGATAGGAGTAGCGACAGGTGTTGCTAAGATGG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TATTTGTGTGCTTTAGGCGGAGGGTAGTTTAGCTCTATAGTTTAGTAGCT chr2A_676 -------------------------------------------------- chr2B_691 TATTTGTGTGCTTTAGGCGGAGGGTAGTTTAGCTCGATAGTTTAGTAGCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TGGCTCCAGGCTTACTGATGTACTACTTTGTAAAGTCTTTGCGAATAATT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTAGTTAGTTAGGGGAATTGTTACTAATTCAAATAGGGGTTTGCTGTTAA chr2A_676 -------------------------------------------------- chr2B_691 CTAGTTAGTTAGGGGAATTGTTACTAATTCAAATAGGGGTTTGCTGTTAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AATAAAGTGGCCGCATGCATCGCCCAGAAGATGCAGAGGCCGGTGTTCAT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CATTACATCTAAAAAAATAGTCTCAACTAACTGTGAAATTTAAAATTCAG chr2A_676 -------------------------------------------------- chr2B_691 CATTACATCTAAAAAAATAGTCTCAACTAACTGTGAAATTTAAAATTCAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CCTCCTTTTAAAAAAATTATCAGAAAAATAAATAACAATAAT-------- chr2B_13 -----------------------AAAAATAGATAACAAGAATATGGACGC chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ATGCTAGGTGCTTTTGAAAAGCCA-CATAATAACTTACCTGATTCTTTCA chr2A_676 -------------------------------------------------- chr2B_691 ATGCTAGGTGCTTTTGAAAAGCCACCATAATAACTTACCTGATTCTTTCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 --------ATAGGTAGGCTGCATGCAATGTTACAGATATGGTTATGAATT chr2B_13 AGATGTGCATAGGTAGGCTGCAGGCAGTGTTGCAGATATGGTTATGAT-- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTTT-TTTTTTCTGATACACTAGCCAGTTCAAGATCCAGCAAAGATGACT chr2A_676 -------------------------------------------------- chr2B_691 TTTTGTTTTTTCTGATACACTAGCCAGTTCAAGATCCAGCAAAGATGACT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ATGTTATGCTCATATACAAATTGCTAGATTGTCATCTTGATAATTAGAAG chr2B_13 -----------------ATACTGATATACTGATATACTGATAATTACTCC chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAAACCATTGTGAAGGCACTCGAAATGACTGGACAGAGAGGTATCATTAA chr2A_676 -------------------------------------------------- chr2B_691 GAAACCATTGTCAAAGCACTCGAAATGACTGGACAGAGAGGTATCATTAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTTAGAACCATACACCCATGATCCATCCACCATTTAAGACCTAGACCGTT chr2B_13 CTCCGTTCCTAATTGCACTG------------------------------ chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CAAGGGTTGGGGTGGCCTCGGAACATGTAAGTTCATCTTGTGATTTGTGA chr2A_676 -------------------------------------------------- chr2B_691 CAAGGGTTGGGGTGGTCTCGGAACATGTAAGTTCATCTTGTTATTCGTGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTTACATGAAGACTTCATTCGATTATACTTTGTTTTAGTGCTTCCTCTCT chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GCATGTTGCACTATTTGGTTGTGGGCATATATTTTGAGTCCATCCTGAGT chr2A_676 -------------------------------------------------- chr2B_691 GCATGTTGCACTATTTGGTTGTGGGCATATATTTTGAGTCCATCCTGAGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GAATGACCATTTACTTCGAGTTTTTGTCAAGATTCTGTCATCGTCGGCAA chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTTGAACCTTTTGCAGTGGCAGAACCAAAAGATTCCATATATGTTCTTGA chr2A_676 -------------------------------------------------- chr2B_691 CTTGAACCTTTTGCAGTGGCAGAACCAAAAGATTCCATATATGTTCTTGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CTTACCCGTGCATTTGTAGGTTGGTATCCAGCAGGGTTCCAAATACCAAG chr2B_13 -------GTGCATTTGTAGTTTGGTACCCAGCAGGGTTCCAAAAGCCAGG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CAACTGCCCTCACGACTGGCTTTTCCTGCAGTGTAAGGCAGTGGTAAGCC chr2A_676 -------------------------------------------------- chr2B_691 CAACTGCCCTCACGACTGGCTTTTCCTGCAGTGTAAGGCAGTGGTAAGCC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AACCGACTGGTTACTGCCCAAGAAACAGGAACCCGTCTGGTTCCATTCCC chr2B_13 AATGGACTGGTTACTG-CCAAGAAACAGGAACCGG-----------TCCG chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTTTCTTGTTACTCTTGGTGGCTTAGTGCATGGATCATATTTTGTTTCAT chr2A_676 -------------------------------------------------- chr2B_691 TTTTCTTGTTACTCTTGGTGGCTTAGTGCATGGATCATATCATGTTTCAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTAAATTGGATCTTCAGAATGTTCAAATTCAGATCTTAAGTCCTCACATT chr2B_13 TTAAATTGGATAGTTAGAATGTTCATATTCAGATATTAAGTTCTCAGATT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGGTATAGTATTTTTAGTGATCATCAAATATCGAATGTTTCCTGATTCTG chr2A_676 -------------------------------------------------- chr2B_691 TCGTATAGTATTTTTAGTGATCATCAAATATCGAATGTTTCCTGATTTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GGACCGGCTTTGGGACTTATATATACACAAATCAATACTGAACTAGGT-- chr2B_13 GGAACATCTTTGGGAC----ATATACACAAATCAGTACTAAACTAAACTT chr2B_31 ----------------------------------------------GT-- chr2B_31 ----------------------------------------------GT-- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CAAAACTAATGAACCAACAGTTTTCATGGGTCATACATAAGAAAATTTGG chr2A_676 -------------------------------------------------- chr2B_691 CAAAACTAATTAACCAACAGTTTTCATGGGTCATACTTAAGAAAATTTGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -----------------TTGTATGATCTCCTGTTAGTAAAAGTACAACAT chr2B_13 CCCTGATTCAGAACTTATTGTATGATCTCCTATTAGTAAAATTACAGCAA chr2B_31 -----------------TTGTATGATCTCCTGTTGGTAGAATTACAGCAA chr2B_31 -----------------TTGTATGATCTCCTGTTGGTAGAATTACAGCAA chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGAAAGAACTCCAGTGTGGCCACTATGGTGCTAATAGCGTCTGTTTATTC chr2A_676 -------------------------------------------------- chr2B_691 TGAAAGAACTCCAGTGTTGCCACTATGGTGCCACTAGTGTCTGTTTATTC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AAATAACTTCTTATGTGA----TTTCCGGTGAAAGAAAAAGGTGTGGAGC chr2B_13 ACATGTATTTTCCCCATGTGATTTTCAGGTGAAAGAAAAGGCTGTGGAGC chr2B_31 ACATGTA-TTTTCACATGTGATTTTCAGGTGAAAGAAAAGGCTGTGGAGC chr2B_31 ACATGTA-TTTTCACATGTGATTTTCAGGTGAAAGAAAAGGCTGTGGAGC chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGTTGAGAGGAAGGCTCACACCTTTTTGTACCTCCACAGGTACACCATGG chr2A_676 -------------------------------------------------- chr2B_691 TGTTGAGAGGAAGGCTCACACCTTTTTGTACCTCCGCAGGTACACCATGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TTGCTAGGGCGATGGAATCTGAAGACGGCGTAACGGGTG---------CA chr2B_13 TTGCCAAGGCCATGGAATCTGAAGACGGCGTAACGGGTG---------CA chr2B_31 TTGCCAAGGCCATGGAATCTGAAGACGGCGTAACGGGTA---------CA chr2B_31 TTGCCAAGGCCATGGAATCTGAAGACGGCGTAACGGGTNNNNNNNNNNCA chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGGTGCTGGAACGACGGCTGCCGGCCTGAAAGCAGCGGTA---------- chr2A_676 -------------------------------------------------- chr2B_691 TGGTGCTGGAACGACGGCTGCCGGCCTGAAAGCAGCGGTATTCTCTCTCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GTTAGGGCATTTCTCAAACATTTGCCTTGTAAAACAGATGAAAATTCACC chr2B_13 GTCAGGGCATTCCGCAAACACCTGCCCTGTAAAACAGATGAAAACTCACC chr2B_31 GTCAGGGCATTCCTCAAACACCTGCCCTGTAAAACAGATGAAAATTCACC chr2B_31 GTCAGGGCATTCCTCAAACACCTGCCCTGTAAAACAGATGAAAATTCACC chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ----------------CTCTCTCTCTCTCTCAGTTGCACTACGTTACGAG chr2A_676 -------------------------------------------------- chr2B_691 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTGCACTACGTTACGAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 CCCGCCGACGCATGGC-TTCTAGAGTTCCTAGGCCCAGTAAGTAAATGCT chr2B_13 CCCACCAACGCACGGCTTTCTAGAGTTCCTAGGCCCAGTAAGTAAATGTT chr2B_31 CCCACCAACGCACGGCTTTCTAGAGTTCCTAGGCCCAGTAAGTAAATGTT chr2B_31 CCCACCAACGCACGGCTTTCTAGAGTTCCTAGGCCCAGTAAGTAAATGTT chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTGTTCATTACAATGCCACATGACTTCCACACTATTCTTGATGCAACTAC chr2A_676 -------------------------------------------------- chr2B_691 CTATTCATCACTATGCTACATGACTTCCACACTATTCTTGATGCAACTAC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TGGGGTGCTCTTAGGTGCTGGTGAGATGCAGGTATATACCATTCCTCCCT chr2B_13 TGGGGTGCTCTTAGGTGCTGGTCAGATGCAGGTATA--CCATTCCTCCCT chr2B_31 TGGGGTGCTCTTAGGTGCTGGTCAGATGCAGGTATA--CCATTCCTCCCT chr2B_31 TGGGGTGCTCTTAGGTGCTGGTCAGATGCAGGTATA--CCATTCCTCCCT chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AGCATTACTTTTTCTAAGCCAATTATTGTTAGGTAGAGTTAGAATCAGCT chr2A_676 -------------------------------------------------- chr2B_691 AGTATTACTTTTTCTAAGCCAATTATTGTTAGGTAGAGTTAGAATCAGCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ACTGAAAGAAGAGTGTAAAAAAAGGCTCTTGGGTGACCGCTATGCCA--- chr2B_13 GCTGAACGGAGAGTGTAACAAAAGGCTCTTGGGTGACGCACTATGCTATT chr2B_31 GCTGAACGGAGAGTGTA--------------------------------- chr2B_31 GCTGAACGGAGAGTGTA--------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAAAACAATTCCTGATCAGGGCATGCCTGCAGTTGCCAGAGACAACTTTT chr2A_676 -------------------------------------------------- chr2B_691 GAAAACAATTCCTGATCAGGGCATGCCTGCAGTTGCCAGAGACAACTTTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ------------AATGTGGAAGCC-AATGTTAGAAATTGATGCAC----A chr2B_13 TCGTGCGATAAGAATGTGGAAGCCGAATGTTAGAAGTTGATGTACTTGCA chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ATTAGCAGCATTTACTCTTAGAACTAGCTAAGCAACTGGCAACTAGCACC chr2A_676 -------------------------------------------------- chr2B_691 ATTAGCAGCATTTACTCTTAGAACTAGCTAAGCAACTGGCAACTAACACC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 TGCGGCCAGGAATGCGTGATTTATCATTTTGCGTCTTTTC---------- chr2B_13 TGCGACCAGGAGCCCGCGATTTATGGTTCTGCGTTTTTTTGTATGTGTGT chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGATCATAATATTTGCTATTTTTGGACCAGTTCTTATATTTAGTTTAGTT chr2A_676 -------------------------------------------------- chr2B_691 TGATCATAATATTTGCTATTTTTGGACCAGTTCTTATATTTAGTTTAGTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 ----------------------------TGATACATCATTTTGGTGTCGT chr2D_1 ----------------------------T--------------------- chr2B_2 ----------------------------T--------------------- chr2A_4 ----------------------------T--------------------- chr2B_5 ----------------------------TGG------------------- chr2D_5 -------------------------------------------------- chr2B_13 TGTGTAAAGAGTATTTGTCTGGTGATTTT--------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTAACCCAGTGTTTTGGTGATTTGTAGTGTCCTACAACTATTGTACCTTT chr2A_676 -------------------------------------------------- chr2B_691 CTAACCCAGTGTTTTGGTGATTTGAAGTGTCCTACAACTATTGTACCTTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------------SSSSSSSS-S---SSSSSS- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TGCAACCTTGGCCTGCAGCAACCGATGATCTCTCATGTATGACCAGGCAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -----------------------------------------------TAG chr2D_418 -------------------------------------------------- chr2A_548 CTTTGGCGACCAACCATTCTGGGGAGAGCGGGTACATGCTAGAGGGGTAG chr2A_676 -------------------------------------------------- chr2B_691 CTTTGGCGACCAACCATTCTGGGGTGAGCGGGTGCATGCTAGAGGGGTAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSS-SSSSSSSSSSS-SSSS--SSSSSSS-SSSSSS-SSSSS--S-S forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 CCTGTGTATATGGAAAACATGAAAGAGGGCAGATTAGTTCACTTACTCCT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GGCCTTCGCCTATACCCGTTGATCAGTTCAATTTGCAGAAGTTGGTTGAT chr2D_418 -------------------------------------------------- chr2A_548 GGCCTTCGCCTATACCGGTTGATCAATTCACTTTGCAGAAGTTGGTTGAT chr2A_676 -------------------------------------------------- chr2B_691 GGCCTTCGCCTATACCGGTTGATCAATTCACTTTGCAGAAGTTGGTTGAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSS-SSSSS-SS-SSSSS---SSS-SSSS-SS-SSSSSSSS-SSS-SS- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TTTGCAGTTTACGACATGGTTTGATTTGAAACTGCCAGGCTTATGATTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 GCTATAAACTTCATGTTAGATCCA-AGGTAACTCTACATTTTTTTTTTTG chr2D_418 -------------------------------------------------- chr2A_548 GCTATAAAATTCATGTTGGATCCAGAGGTAACTCTACAAATTCTTTGCGC chr2A_676 -------------------------------------------------- chr2B_691 GCTATAAAATTCATGTTGGATCCAGAGGTAACTCTACAACTTTTTTGCGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SS-SS-SSS-S-SSSS---S-SS-SSS-S----SSSSSS---S-SS--SS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TGTTTCAAGTTTTTCCTTGTTCTGCATGCCTGGGAAAGTAATTTTGGTAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CACTTGGGGCATATGTTACTTTTCCTTTTGTTTCATATCGCAAAAATAGA chr2D_418 -------------------------------------------------- chr2A_548 TTGGGCAGATGCG----ACTTTTTCTTTTGTTTCATATCGCAAAAATAGA chr2A_676 -------------------------------------------------- chr2B_691 TTGGGCAGATGAG----ACTTTTTCTTTTGTTTCATATCGCAAAAATAGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -SS----S--S-S-SS-SS--S-S-S-SSS-SSS-S-SSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 CCTATGTTCTCCTTTTTTTCCCGAGTTCCCCAAAAAGTGAAATAATTCAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TA------------------------------------------------ chr2D_418 -------------------------------------------------- chr2A_548 TAACAAGAATATGGACACAGATGTGCATAGTTAGGCTGCAGGCAGTGTTG chr2A_676 -------------------------------------------------- chr2B_691 TAACAAGAATATGGACGCAGATGTGCATAGGTAGGCTGCAGGCAGTGTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSS-SSSSSSSSSSSS-S-SSSSSSS-SSSSSS-SSS-S-SSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AGATGTAAACTGGGCTATATCTTGCGAAATATGACTTGTTACTTGTACGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ---------------------------------------------CTCCC chr2D_418 -------------------------------------------------- chr2A_548 CAGATATGGTTATGATATACTGATATAC------------------TCCC chr2A_676 -------------------------------------------------- chr2B_691 CAGATATGGTTATGATATACTGATATACTGATATACTGATAATTACTCCC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSS-SS-S----SSSSSSS-SSS--SSSS--S--S--SSS-SS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AAGAGACAAAATTATGGCTGTTCATTTGTATCTTGAAAGTTTTTGTAGGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TCCATTCCCTTATACAAGATTAGGGAGTATCTCAGTACTGAATTAG---- chr2D_418 -------------------------------------------------- chr2A_548 TCCATTCCTAAATATTTGTCTTTCTAGACATTTCAAATGACTACTACATA chr2A_676 -------------------------------------------------- chr2B_691 TCCGTTCCTAATTGCACTG------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSS-SS-SS------SSS-S--SS-SSSS--S-S---S-SS---SSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TTCACAAAATGATCACAAATTTTGATGAAAATTTGCAAGTTCGTGGGGAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CGGATGTATGTAGACATATTTTAAAGTGTAGATTCACTCATTTTGCTCCG chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSS-SSS-SSS-SSSSS-S---SS-SSSS-SS--SSSSSS-SS--SSSS- forward_6313 -------------------------------------------TGGGGAG reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AGGTGAACTGGAAAATGAGCTTCACTGTTCCAACTGTATTTTCAATATTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TATGTAGTCACTTGTTGAAATGCCTAGAAAGACAAGTATTTAGGAACGGA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSS-SSSSSSSSS---SS-S-SSS-SSSS-SSS------SSS-SSSSS forward_6313 AGGTGAACTGGAA------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GTACAATGTATCATTTTCTAGTCTTCTAGTTTTTCCAGCAAAGAAATATG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGGAGTACAAAATTGCTAGATTATCACCTTGATAATTAGAAGTTTAGAAC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -SSSSSSSS-SSS-SS-SS-S-S-SSSSS-SS-SSSSSS--SSSS-S-SS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AAAAAATTCCCTAGTAGAAACCCATCATTATCATATAAATGGCTCTTCAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CCCATGATCCATCCACCATTTAAGACCTTCACCATTTTTTACATGAGGAC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSS-SSS---S-SSSSS-SSSSSSS-S--SS-SSS-SSS-SSS-SSSS-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 ------------------------------------AAATGGCTCTTCAC reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 CGCAGTGAGCCGAACAAATTGGCTCACAGAAAAGGAAAAAAGATACCA-- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTAATCCAAATATACATTGTCAAGATGAATGACCATTTACTTGAGTTTTT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSS-SSS-SSSSS---SSS-SSSSSSS-SSS-SSSSSS-SSSSSSSSS-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 CGCAGT-------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGAAAGATTCTGTTGTCGTCGGTAACTTACCAGTGCATTCGTAGTTTGGT chr2A_676 -------------------------------------------------- chr2B_691 --------------------------------GTGCATTTGTAGTTTGGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ACCCAGCAGGGTTCCAAAAGCCAGGAACAGACTGGTTACTGCCAAGAAAC chr2A_676 -------------------------------------------------- chr2B_691 ACCCAGCAGGGTTCCAAAAGCCAGGAATAGACTGGTTACTGCCAAGAAAC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AGGAACCGGTCCGTTAAATTGGATAGTTAGAATGTTCAAATTCAGATATT chr2A_676 -------------------------------------------------- chr2B_691 AGGAACCGGTCCGTTAAATTGGATAGTTAGAATGTTCATATTCAGATATT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AAGTTCTCAGATTGGAACAGCTTTGGGACATATACACAAATCAGTACTAA chr2A_676 -------------------------------------------------- chr2B_691 AAGTTCTCAGATTGGAACAGCTTTGGGACATATACACAAATCAGTACTAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 ----------------------------------------GTTTGTATGA chr2D_418 -------------------------------------------------- chr2A_548 ACTAAACTTCCCTGATTCAGAACTTATTTATAACTCACTAGTTTGTATGA chr2A_676 -------------------------------------------------- chr2B_691 ACTAAACTTCCCTGATTCAGAACTTATT----------------GTATGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 TCTCCTGTTAGTAAAATTATAGCATAAATAACTTTCCATGTGA----TTT chr2D_418 -------------------------------------------------- chr2A_548 TCTCCTGTTAGTAAAATTACAGCAAACATGTATTTTCCCCATGTGATTTT chr2A_676 -------------------------------------------------- chr2B_691 TCTCCTATTAGTAAAATTACAGCAAACATGTATTTTCCCCATGTGATTTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CAGGTGAAAGAAAAGGCTGTGGAGCTTCCCAAGGCCATGGAATCTGAAGA chr2D_418 -------------------------------------------------- chr2A_548 CAGGTGAAAGAAAAGGCCGTGGAGCTTGCCAAGGCCATGGAATCAGAAGA chr2A_676 -------------------------------------------------- chr2B_691 CAGGTGAAAGAAAAGGCTGTGGAGCTTGCCAAGGCCATGGAATCTGAAGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CGGCGTAACGGGCGCAGTTAGGGCATTCCTCAAACATTTGCCTTGCAAAA chr2D_418 -------------------------------------------------- chr2A_548 CGGTGTAACGGGCGCAGTCAGGGCATTCCTCAAACACCTGCCCTGTAAAA chr2A_676 -------------------------------------------------- chr2B_691 CGGCGTAACGGGTGCAGTCAGGGCATTCCTCAAACACCTGCCCTGTAAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CAGATGAAAATTCACCCCCGCTGACGCATGGCTTTCTAGAGTTCCTAGCC chr2D_418 -------------------------------------------------- chr2A_548 CAGATGAAAATTCACCCCCACCAACGCACGGCTTTCTAGAGTTCCTAGGC chr2A_676 -------------------------------------------------- chr2B_691 CAGATGAAAACTCACCCCCACCAACGCACGGCTTTCTAGAGTTCCTAGGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 CCAGTAAGTAAATGTTTGGGGTCCTCTTAGGTGCTGGTCAGATGCAGGCA chr2D_418 -------------------------------------------------- chr2A_548 CCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGATGAAGGTA chr2A_676 -------------------------------------------------- chr2B_691 CCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGATGCAGGTA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------AAAAAGGCTCTTGGGTGAC chr2B_31 -------------------------------AAAAAGGCTCTTGGGTGAC chr2B_31 TACCATTACTCCCTGCTGAAAGAAGAGTGCAAAAAAGGCTCTTGGGTGAC chr2D_418 -------------------------------------------------- chr2A_548 TACCATTCCTCCCTGCTGAACGAAGAGTGTAAAAAAGGCTCTTGGGTGAC chr2A_676 -------------------------------------------------- chr2B_691 TACCATTCCTCCCTGCTGAACGGAGAGTGTAAAAAAGGCTCTTGGGTGAC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 GCACTATGCTATTTCGTGCGATAAGAATGTGGAAGCCGAATGTTAGAAGT chr2B_31 GCACTATGCTATTTCGTGCGATAAGAATGTGGAAGCCGAATGTTAGAAGT chr2B_31 CGCTATGCCTTTGT-GTGCGATAAGAATGTGGAAGCCAAATGTTAGAAGT chr2D_418 -------------------------------------------------- chr2A_548 GCGCTATGCTATTTCGTGCGATAAGAATGTGGAAGCCAAATGTTAGAAGT chr2A_676 -------------------------------------------------- chr2B_691 GCACTATGCTATTTCGTGCGATAAGAATGTGGAAGCCGAATGTTAGAAGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 ------------------------------------------------TT chr2B_13 -------------------------------------------------- chr2B_31 TGATGTACTTGCATGCGACCAGGAGCCCGCGATTTATGGTTCTGCG-TTT chr2B_31 TGATGTACTTGCATGCGACCAGGAGCCCGCGATTTATGGTTCTGCG-TTT chr2B_31 TGATGTACATGCATGCGACCAGGAGCCCGTGATTTACCGTTTTGCA-TTT chr2D_418 -------------------------------------------------- chr2A_548 CGATGTACATGCATGCGACCAGGAGCCCGTGATTTATCGTTTTGCGTTTT chr2A_676 -------------------------------------------------- chr2B_691 TGATGTACTTGCATGCGACCAGGAGCCCGCGATTTATGGTTCTGCG-TTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------AATACAT chr2B_2 -------------------------------------------AATACAT chr2A_4 -------------------------------------------AATACAT chr2B_5 ---------------------------------------------TACAT chr2D_5 TTTGGTATGTGTTGTGT---AAGAGTGCTTGTCTGGTGATTTG-ATACAT chr2B_13 -------------------------------------------AATACAT chr2B_31 TTTTGTATGTGTGTTGTGTAAAGAGTATTTGTCTGGTGATTTTAATACAT chr2B_31 TTTTGTATGTGTGTTGTGTAAAGAGTATTTGTCTGGTGATTTTAATACAT chr2B_31 TTTTATATGTGTGTTGTGTAAAGAGTACTTGTCTGGTGATTTG-ATACAT chr2D_418 -------------------------------------------------- chr2A_548 TTTTGTATGTGTGTTGTGTAAAGAGTATTTGTCTGGTGATTTTAATACAT chr2A_676 -------------------------------------------------- chr2B_691 TTCTGTATGTGTGTTGTGTAAAGAGTATTTGTCTGGTGATTTG-ATACAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGCAACCGATGATCTCTCAT chr2B_2 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGCAACCGATGATCTCTCAT chr2A_4 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGCAACTGATGATCTCTCAT chr2B_5 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGCAACCGATGATCTCTCAT chr2D_5 CATTTTGGTGTGGTTGCAACCTTGGTCTGCAGCAACCGATGATCTCAAAT chr2B_13 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGGAACAGATGATCCCTCAT chr2B_31 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGGAACAGATGATCCCACAT chr2B_31 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGGAACAGATGATCCCACAT chr2B_31 CATTTTGGTGTGGTTGCAACCTTGGCCTGCAGCAACCGATGATCTCGCAT chr2D_418 -------------------------------------------------- chr2A_548 CATTTTGGTGTGGTTGCAACCTTGGTCTGCAGCAACCGATGAA-TCTCAT chr2A_676 -------------------------------------------------- chr2B_691 CATTTTGGTGTGGTTGCAACCTTGGCATGCAGCAACCGATGATCTCGCAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 GTATGACCAGGCAACCTGTGTATATGGTAAACTTGAAAGAGGGAAGATTT chr2B_2 GTATGACCAGGCAACCTGTGTATATGGAAAACTTGAAAGAGGGAAGATTT chr2A_4 GTATGACCAGGCAACCTGTGTATATGGAAAACTTGAAAGAGGGAAGATTA chr2B_5 GTATGACCATGCAACCTGTGTATATGGAAAACTTGAAAGAGGGCAGATTA chr2D_5 GTATGACCAGTCAACCTAAGTATATGGAAAACTTGA--GATTGCAGATTA chr2B_13 GTATGACCAGGCAACCTGTGTATATGGAAAACTTCA--GAGTGCAGATTA chr2B_31 GTATGACCAGGCAACCTGTGTATATGGAAAACTTCA--GAGTGCAGATTA chr2B_31 GTATGACCAGGCAACCTGTGTATATGGAAAACTTCA--GAGTGCAGATTA chr2B_31 GTATGACCAGACAATCTGTGTCTATGGAGAACTTCA--GAGTGCAGATTA chr2D_418 -------------------------------------------------- chr2A_548 GTATGACCAGACAACCTGTGTATATGGAAAACTTCA--GAGTGCAGATTA chr2A_676 -------------------------------------------------- chr2B_691 TTATGACCAGACAATCTGTGTATATGGAGAACTTCA--GAGTGCAGATTA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 GTTCACTTACTCCTTTTGCAGTTTA--CGACATGGTAT-GATTTGAAACT chr2B_2 GTTCACTTAATCCTTTTGCAGTTTA--CGACATGGTTT-GATTTGAAACT chr2A_4 GTTCACTTACTCCTTTTGCAGTTTA--CGACATGGTTT-GATTTGAAACT chr2B_5 GTTTACTTATTCCTTTTGT-GTTTA--CGATATCGATT-CATTTGAAATT chr2D_5 GTTCAGCCAATCCTTTTGCAGTTTA--CGACATGGTTTTAATTTGAAACT chr2B_13 GTTCAGCCAATCCTTTTGCAGTTTA--CGACATGGTTT-AATTTGAAACT chr2B_31 GTTCAGCCAATCCTTTTGCAGTTTA--CGACATGGTTT-AATTTGAAACT chr2B_31 GTTCAGCCAATCCTTTTGCAGTTTA--CGACATGGTTT-AATTTGAAACT chr2B_31 GTTCAGCTACGCCTTTTGCAGTTTA--CCACATTGTTT-AATTTGAAACT chr2D_418 -------------------------------------------------- chr2A_548 GTTCAGTTGCTCCTTTTGCAGTTTATACGATATAGTTT-GATTTGAAACT chr2A_676 -------------------------------------------------- chr2B_691 GTTCAGCTACGCCTTTTGCAGTTTA--CCACATGGTTT-AATTTGAAACT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 GCCAGGCTTATGATTAT-------------TGTTTCAAGTTTTTCCTT-G chr2B_2 GCCAGGCTTACGATTAT-------------TGTTTCAAGTTTTTCCTT-G chr2A_4 GCCAGGCTTATGATTAT-------------TGTTTCAAGTTTTTCCTT-G chr2B_5 GTCAGGATTATGATTAT-------------TGTTTCAAGTTTTTCCTA-G chr2D_5 GCCAGACATGTCATGGTTATACTTA-----GGTTTCAAGTTTTTCCTA-G chr2B_13 GCCAAACATGTCATGGTTATAATTA-----TGTTTCAAGTTTTTCCTA-G chr2B_31 GCCAAGCATGTCATGGTTATAATTA-----TGTTTCAAGTTTTTCCTA-G chr2B_31 GCCAAGCATGTCATGGTTATAATTA-----TGTTTCAAGTTTTTCCTA-G chr2B_31 GCCAAACATGTCATGTTTATAATCA-----TGTTTCAAGTGTTTCCTT-G chr2D_418 -------------------------------------------------- chr2A_548 GCTGGGCATGTCATGGTTATAATTACAGTATGTTTCAAGTTTTTCCTA-G chr2A_676 -------------------------------------------------- chr2B_691 GCCAAACATGTCATGTTTATAATTA-----TGTTTCAAGTGTTTCCTTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 TTCTGCATG----------------------------------------- chr2B_2 TTCTGCATG----------------------------------------- chr2A_4 TTCTGCATG----------------------------------------- chr2B_5 TTTCGCATG----------------------------------------- chr2D_5 TTCTACTACAGGTCTTCATTTTGAGATAAATT---------TGACCTCAT chr2B_13 CTCTACTACAGGTCTTCATTTTAAGATAAATTAGACACCTGTGACCTCAT chr2B_31 CTCTACTACAGGTCTTCATTTTAAGATAAATTAGACACCTGTGACCTCAT chr2B_31 CTCTACTACAGGTCTTCATTTTAAGATAAATTAGACACCTGTGACCTCAT chr2B_31 TTCT---------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTCTACTACAGGCCTTCATTTTAAGATAAAGTAGAGACCTGTGACCTCGT chr2A_676 -------------------------------------------------- chr2B_691 TTCTACTACAGGTCTTCATGTTAAGATAAAGTAGTGACATGTGACCTCAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 ---CAGGGGAAAGTAATTTTGGTATCCCATATTCTCCTT-T--TTCCCGA chr2B_2 ---CAGGGGAAAGTAATTT-GGTACCCCATGTTCTCCTT-TTTTTTCCGA chr2A_4 ---CAGGGGAAAGTAATTTCGGTATCCCATATTCTCCTT-TTTTTCCCGA chr2B_5 ---CAGGGAAAACTAATTTTGGTACCCCATGTTCT--------------- chr2D_5 GCACAGGGGAAAGTAATTCTGTCACCCCAG----TACTA-TTTGTTTTCA chr2B_13 GCACAGGGGAAAGTAATTCTGTCACCCCAG----TACTA-TTTGTTTTCA chr2B_31 GCACAGGGGAAAGTAATTCTGTCACCCCAG----TACTA-TTTGTTTTCA chr2B_31 GCACAGGGGAAAGTAATTCTGTCACCCCAG----TACTA-TTTGTTTTCA chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GCACGGGGGAAAGTAATTATGTCATCCCTG----TACTT-TTTTTTCTCA chr2A_676 -------------------------------------------------- chr2B_691 GCACAGGGGAAAGTAATACTGTCACCCCAG----TATTTCTTTTTTCTCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 GTTCCC-CAAAAAGTGAAAT-AATTCATGG-TGTAAACTGGGCTATATC- chr2B_2 GTTCCC-CCAAAAGTGAAAT-AATTCATGGATGTTAACTGGGCTATATC- chr2A_4 GTTCCC-CAAAAAGTGAAAT-AATTCATGG-TGTAAACTGGGCTATATC- chr2B_5 -----C-CAAAAAGTGAAAT-AATTCATGGATGTAAATTAGGCTATATC- chr2D_5 GTTCCCAAAAAAAGTGAACT-AATTCATGGTTGTAAATTGGGCTATATG- chr2B_13 GTTCCCAAAAAATGTGAAAT-AGTTCATGGTTTTAAATTAAGCTATATC- chr2B_31 GTTCCCAAAAAATGTGAAAT-AGTTCATGGTTTTAAATTGGGCTATATC- chr2B_31 GTTCCCAAAAAATGTGAAAT-AGTTCATGGTTTTAAATTGGGCTATATC- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTTTCC-AAAAATATGAAAACAAGTCATGGTTGTAAATTGGGCTATATC- chr2A_676 -------------------------------------------------- chr2B_691 GTTTCC-AAAAATGTGAAAT-AATTCATGGTCGTAAATTAGGCTATATAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 ------------------TTGTGAAATATGAC--TTGTTACTTGCACGAA chr2B_2 ------------------TTGCGAAATATGAC--TTGTTACTTGTACGAA chr2A_4 ------------------TTGCGAAATATGAC--TTGTTACTTGCACGAA chr2B_5 ------------------TTGCAAAATATGAC--TTGTTACTTATACGAA chr2D_5 ------------------TTG-------TGAA--ATATTACTTGTACGAA chr2B_13 ------------------TTG-------TGAA--ATATTACTTGTACGAA chr2B_31 ------------------TTG-------TGAA--ATATTACTTGTACGAA chr2B_31 ------------------TTG-------TGAA--ATATTACTTGTACGAA chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ------------------TTG-------TGAA--ATATTACTTGTATGAA chr2A_676 -------------------------------------------------- chr2B_691 TATGCATTTGCAAAAACTTTGAAAAATATGACTTATGTGACTTGTACAGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 AGAGATAACTATAT--------------GGCTGTTCATTTGT-------- chr2B_2 AGAGACAACTTTAT--------------GGCTGTTCATTTGT-------- chr2A_4 AGAGATAACTATAT--------------GGCTGTTCATTTGT-------- chr2B_5 AGAGATAACTTTAT--------------GGCTGCTCATTTGT-------- chr2D_5 AAAGACAACTCTAT--------------GGCTATTCATTTGT-------- chr2B_13 AAAGACAACTCTAT--------------GGCTATTCATTTGT-------- chr2B_31 AAAGACAACTCTAT--------------GGCTATTCATTTGT-------- chr2B_31 AAAGACAACTCTAT--------------GGCTATTCATTTGT-------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AAAGACAACTCTAT--------------GGCTATTCATTAGGAGGGCCGT chr2A_676 -------------------------------------------------- chr2B_691 AAATACAACTCTGGCTATATCAAATGAGGGTTGTTCATTTAT-------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTTGGCTTTGGGTGCATATGCTCCTTAATGAACAGTAAATTAAAAATAAA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TAGTAAATAAAATTTAAAAATTCTGATATTTTTTGTAGATGTTCTTGTTA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTGTAACAAGCGTGCTTGGCAATTTTGATGTGAAACAGGATGAGGGTGCT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CGTTGGTGAAAAAAAAATAAGTGTAACATTTGGTGTTTGACTTATTCTTT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTTTGCACAGATCAAAATCTTAAGCTTTCTTCCTAAAAACTTACACTGCA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTTTGGTCTGACAATGAACACATCTGTTTTTTTCTAAAATATGTTGACAT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TTAGAAAAAACATTTTTGGTGGGCAAAAGCATATGCTCCCAAGAGCCGAA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 ------------------------ATCTTGAAAGTTTTTGTCTGGTTCAT chr2B_2 ------------------------ATCTTGAATTTTTTTGTCTGGTTCAC chr2A_4 ------------------------ATCTTGAAAGTTTTTGTCTGGTTCAC chr2B_5 ------------------------ATCTTGAAAGTTTTTGCGTGGTTCAC chr2D_5 ------------------------ATCTCGAAAGTTTTTGTCTAGGTCAC chr2B_13 ------------------------ATCTCGAAAGTTTTTGCCTCGGTCAC chr2B_31 ------------------------ATCTCGAAAGTTTTTGCCTCGGTCAC chr2B_31 ------------------------ATCTCGAAAGTTTTTGCCTCGGTCAC chr2B_31 -------------------------------------------------- chr2D_418 -------------------TTGTAATCACAAAACTTTTTGTCTAGGTCAC chr2A_548 TTGAATATCTGCTATTCATTTGTAATCTCAAAACTTGTTGTCTAGGTCAC chr2A_676 -------------------------------------------------- chr2B_691 ------------------------ATATCTGTTTTTCTTGTCTAAGTCAC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 AAAATGATCACAAATTTTGATGAA-------------------------- chr2B_2 AAAATGATCACAAATTTTGATGAA-------------------------- chr2A_4 AAAATGATCACAAATTTTGATGAA-------------------------- chr2B_5 AAAATGATCACAATTTTTGACACAACA----------------------- chr2D_5 AAAATGATAAAAAATTT--------------------------------- chr2B_13 AAAATGATCACAAATTTTGATGAA-------------------------- chr2B_31 AAAATGATCACAAATTTTGATGAA-------------------------- chr2B_31 AAAATGATCACAAATTTTGATGAA-------------------------- chr2B_31 -------------------------------------------------- chr2D_418 AAAATGATCACAAATTTTGATGAA-------------------------- chr2A_548 AAAATAATCACAAATTTTGATGAAAATTACAAGTTTGTTTTTTTCTGAGA chr2A_676 -------------------------------------------------- chr2B_691 AAATTGATCATATTTTTGTA-GAA-------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 ACTGATGACAGTGAGATTCTCTGCCTTTTGTATTAATAAGTTAAGAGTTA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGGGGGGTTAGAGTATCCAGAAAGTTACAATTTACATTGGAGGGGGGGAG chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGATTAATAAGCTATTACAAAGAATTACAGTGAGCTAACTAGTGATAAAA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGTAAGGGCCATGCTCCTGCTTCGATCTATGAGCTAGCATGGCAAAGTCC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AGCTTGAATCTATTCTTCCAAGAATCAAACGAGGGCTGGATGAAGTGTTT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GTCATTTCTCTCCTTCCAGATCCCCCAAGCTGCCACCGCAAAAACTTCCT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGAACAAAGGCTGAGCCCATTTGACCTTGGAATCATGCAGCATTCTCAAC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTGCAAGTATCATTTGGCCATTGGATTCCAAGGGCATTCCAGCATCTCTG chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GCTGAAGGGGCAGGTAAAGAAGAGGTGCACGATGTCCTCCTCCGGAGGGT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGTGACAAAGTAGACAAGTATAGTCATCATTTTGGATTTTGTAATGCCTT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTCTTGAGCATATTCCTAGTGTTTAGTCTATCGGCCATCAACAGCCACAG chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAACACTTTCCACTACATGGTACATTTAGTTTTCCATATCCAACTGAAGG chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CATCGTCAGCATGCACTTGGCTGAAGCAGTGAGCATAAAATTGTGTAGAT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CTAAAGTCTCTCCCGCCCCAGACACAAGACCAAGTATCCTTGCCCGCCAC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GAGGGAAATATCCAAAGTTTCAGTCTACAGACCAGCCACCTCTTGTCGCG chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CCTCCGATGAGAGAGGAAGGTGGAACACCTCACCCAATTGTTCAGAGGAT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 AGTAGTTGACGCACCGAAGTGTCCGGCTCTCTGGCAAACGAGAAGGCTCT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 CGGGAATTTGTCTTGAAAATTTTCACTTTTCCATTTGTCCTTCCAGAAGA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 GGACCATGTCTCCCGCTGCCACATCCGTCTTTGTGACTCCTCTGTAGATA chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TCCGAGAGTTGCATGAGATCCCTCCACCAAAACTATCCACACGGCTCCGT chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 TGCATGAGGTATCTTGCCTGCATAATAAGTATCCCAGATCAAGTTCACCC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 --------------------------------------------AATTTG chr2B_2 --------------------------------------------AATTTG chr2A_4 --------------------------------------------AATTTG chr2B_5 -----------------------------------------------TTG chr2D_5 -------------------------------------------------A chr2B_13 --------------------------------------------AATTTA chr2B_31 --------------------------------------------AATTTA chr2B_31 --------------------------------------------AATTTA chr2B_31 -------------------------------------------------- chr2D_418 --------------------------------------------AATTTA chr2A_548 AAGGAACATCGAGCTTGTTGTATAATTTGTGAAGCTTGCTGTAGAATTTA chr2A_676 -------------------------------------------------- chr2B_691 --------------------------------------------ATTATA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 CAAGTTCGTG---GGGAGAGGTGAACTGGAAAA--TGAGCTTCACTGTTC chr2B_2 CATGTTCGTG---GGGAGAGGTGAACTG-AAAA--TGAGCTTCACTGTTC chr2A_4 CATGTTCGTG---GGGAGAGGTGAACTGGAAAA--TGAGCTTCACTGTTC chr2B_5 CAAGTTCGTG---GTGAGAGATGAACGGGAAAA--TGAGCTTCACTGTTC chr2D_5 CAAGTTCGTAGCAGCGAGAGGTGAACTGGAAAA--TGAGCTTTACAATTC chr2B_13 CAAGTTCGTG---GCGAGAGGTTAACTGGAAAA--TGAGCTGTAGAGACC chr2B_31 CAAGTTCGTG---GCGAGAGGTTAACTGGAAAA--TGAGCTGTCGAGACC chr2B_31 CAAGTTCGTG---GCGAGAGGTTAACTGGAAAA--TGAGCTGTCGAGACC chr2B_31 -------------------------------------------------- chr2D_418 CAAGTTCGTG---GCGAGAGGTGAACTGGAAAAAATGAGTTTTATAGTTC chr2A_548 CAAGTTCGTG---GCGAGAGGTGAACTGGAAAG--TGAGTTTTACAGTTC chr2A_676 -------------------------------------------------- chr2B_691 TAAGTTTGTG---GCGAGAGGTGAACTGGAGAA--TGACCTTTTCACTTC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 CAACTG-TATTTTCAATATT------------------------------ chr2B_2 GAACTG-TATTTTCAATATT------------------------------ chr2A_4 CAACTG-TATTTTCAATATT------------------------------ chr2B_5 CAATTG-TATTTTCAATATT------------------------------ chr2D_5 CAACTG-TATTTACTATTTATTAAAAGGTCTTATATTAGTTTACAGAGGT chr2B_13 CAACTG-TATTTATCATTTAA----------------------------- chr2B_31 CAACTG-TATTTATCATTTAA----------------------------- chr2B_31 CAACTG-TATTTATCATTTAA----------------------------- chr2B_31 -------------------------------------------------- chr2D_418 CAACTG-TATTTGCCATTTAA----------------------------- chr2A_548 CAACTG-TATTTGCCATTTAA----------------------------- chr2A_676 -------------------------------------------------- chr2B_691 CAACCGATATTTTGCATTAAA----------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------TGTACAATGTGTCA---TT chr2B_2 -------------------------------TGTACAATGTGTCA---TT chr2A_4 -------------------------------TGTACAATGTGTCA---TT chr2B_5 -------------------------------TGTACAATGTGTCA---TT chr2D_5 AGTATTTGTTTACATGGGGATCTAACAGGTGCATACAATGTGTT----TT chr2B_13 --TATTTGTTTACGTGGGGATCTGACAGGCGTGTACAATGTGTTTTTGTT chr2B_31 --TATTGGTTTACGTGGGGATCTGACGGGCGTGTACAATGTGTTTTTGTT chr2B_31 --TATTGGTTTACGTGGGGATCTGACGGGCGTGTACAATGTGTTTTTGTT chr2B_31 -------------------------------------------------- chr2D_418 --TATTTGTTTATGTGGGGATCTGACAGGTGCGTACAATGTGTTTTTGTT chr2A_548 --TATTTGTTTACGTGGGGATCTGACAGGTGCGTACAATGTGTTTTTGTT chr2A_676 -------------------------------------------------- chr2B_691 --TATTGGTTTAAGTGC--ATCTGACAGGTGTGTGTGTC----------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 TTCTAGTCTTCTAGTTTTTCGAGCAAAGAAATAT-AAAT-T-T-T---CC chr2B_2 TTCTAGTCTTCTAGTTTTTCTAGCAAAGAAATATAAAACAT-T-T---CC chr2A_4 TTCTAGTCTTCTAGTTTTTCCAGCAAAGAAATACAAAAT-T-T-T---CC chr2B_5 TTCTAGTCTTCTAGTTTTTCCAGCAAAGAAATACAAAAAAAAAAT---CC chr2D_5 TGTTAGTCTTCTAGTTTCTCCAGCAAAGCAAATATCAAAAATA-C---CC chr2B_13 CTATAGTCTTCTAGTTTTTTCAGCAAAGAAAATATCAAAAAAAAATTGCC chr2B_31 CTATAGGCTTCTAGTTTTTTCAGCAAAGAAAATAGCAAAAAAAAATTGCC chr2B_31 CTATAGGCTTCTAGTTTTTTCAGCAAAGAAAATAGCAAAAAAAAATTGCC chr2B_31 -------------------------------------------------- chr2D_418 CTGTAGTCTTCTAGTTTTTCCAGCAAAGAAAATATCAAAACAA-T---TC chr2A_548 CTATAGTCTTCTAGTTTT-CCAGCAAAGAAAATATCAAAAAAT-T---CC chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 CTAGTAGAAACCCATCATTATCATGTAAAGGGCTCTTC------------ chr2B_2 CTAGTAGAAACCCATCATTATCATGTAAAGGGCTCTTC------------ chr2A_4 CTAGTAGAAACCCATCATTATCATGTAAAGGGCTCTTC------------ chr2B_5 CTACTAGAAACCCATCATTATCATGCAAAGGGCTCTTC------------ chr2D_5 CCAGTAG-AACCCATCATTATAAGGCAAAGGGCGCTTTTTTAATACATGA chr2B_13 CTAGTAGAAGCCCGTCATTATAAGCCAAAGGGATCTTTATTAATGTATGA chr2B_31 CTAGTAGAAGCCCGTCATTATAAGCCAAAGGGATCTTTATTAATGTATGA chr2B_31 CTAGTAGAAGCCCGTCATTATAAGCCAAAGGGATCTTTATTAATGTATGA chr2B_31 -------------------------------------------------- chr2D_418 CCAGTAGAAACCCATC---------------GCTCTTTATTGATGTATGA chr2A_548 CTAGTAGAAACCCATCATTATAAGGCAAAGGGCTCTTTATTGATGTATGA chr2A_676 -------------------------------------------------- chr2B_691 ---GTAGAAACCCATCATTATCAGGCAAAGGGCTCTATTA----ACGTGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 GAAGAATCTCAGAAGACCTCGTCGAGAAATTGGGAG-GTATGTAACCGAA chr2B_13 AAAGATTATCAGAAGATCTTGTCGGGACATTGGGAGTGTATGTAACCAAA chr2B_31 AAAGATTATCAGAAGATCTTGTCGGGACATTGGGAGTGTATGTAACCAAA chr2B_31 AAAGATTATCAGAAGATCTTGTCGGGACATTGGGAGTGTATGTAACCAAA chr2B_31 -------------------------------------------------- chr2D_418 AAAGATTATCAGAAGATCTTGGTGAGACATTGGGAGCGTATGTAACCAAA chr2A_548 AAAGATTATCAGAAGATCTTGGCGAGACATTGGGAGCGTATGTAACCAAA chr2A_676 -------------------------------------------------- chr2B_691 AAAGATTCTCAAAAGATCTTGCCGAGACATCTGTAGCGTAGAAAACCAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 --ACCGCAGTGAGCCGAACATATTAGCTCACAGAAAAGG-AAAAAA-GA- chr2B_2 --ACCGCAGTGAGCCGAACATATTGGCTCACAAAAAAGGAAAAAAA-GA- chr2A_4 --ACCGCAGTGAGCCGAACAGATTGGCTCACAGAAAAGG-AAAAAA-GA- chr2B_5 --ATCACAGTGAGATGAACAGATTAGCTCACAGAAAAGG-AAAAA--GA- chr2D_5 TTATTACAGTGAGCGAAACTTATTGGCTCATAGAAAAGG-AAAAAA-GAT chr2B_13 TTATTACAGTGAGCCAAACATGTTGGCTTACAGAAAAGG-AAAAAAAGA- chr2B_31 TTATTACAGTGAGCCAAACATGTTGGCTTACAGAAAAGG-AAAAAAAGA- chr2B_31 TTATTACAGTGAGCCAAACATGTTGGCTTACAGAAAAGG-AAAAAAAGA- chr2B_31 -------------------------------------------------- chr2D_418 TTATTACAGTGAGCCAAACATATTGGCTTACAGAAAAGG-AAAA-AAGA- chr2A_548 TTATTACAGTGAGCCAAACATATTGGCTTACAGAAAAGG-AAAAAA-GA- chr2A_676 -------------------------------------GG-AAAAAA-GA- chr2B_691 TTATTACAGAGAGCCAAACAAATCGACTTATTAAAAAGG-AAAAAA-GA- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 AGTCCCTCACTAGTGTAGTGTCAAAAATGCTCTTATATTATGGGACAGAG chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 ---------ACATATTTTCATGCCGTGGTCG------------AAGCAAT chr2D_1 ----TACCAACATATTTTCATGCCGTGGTCG------------AAGCAAC chr2B_2 ----TACCAACATATTTTCATGCCGTGGTCG------------AAGCAAC chr2A_4 ----TACCAACATATTTTCATGCCGTGGTCG------------AAGCAAC chr2B_5 ----TAGCTACATATTTTCATGTCATGGTCG------------AAGCAAC chr2D_5 GGAGTAGCAACATATTGTCATGTTGTGGTCG------------AAGCAAC chr2B_13 ----TAGCAACATGCTGTCATGCTGTGGTCG------------AAGCAAC chr2B_31 ----TAGCAACATGCTGTCATGCTGTGGTCG------------AAGCAAC chr2B_31 ----TAGCAACATGCTGTCATGCTGTGGTCG------------AAGCAAC chr2B_31 -------------------------------------------------- chr2D_418 ----TAGCAACATGTTGTCATGCTGTGGTCG------------AAGCAAC chr2A_548 ----TAGCAACATGTTGTCATGCTGTGGTCG------------GAGCAAC chr2A_676 ----TAGCAACGTATTGTTATGTCGTGGCCG------------AAGCTAC chr2B_691 ----TGGCAAGATAGCAAATTATCAACATATTGCCATGCCGTAAAGCAAC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------S forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GAGCTTCA--CCTTCATCGACCGCCTTT---------TTG-CCTTAATAA chr2D_1 AAGCTTCA--CCTTCATCGACCGCCTTT---------TTT-CCTTAATAA chr2B_2 GAGCTTAA--TCTTCATCGACCGCCTTT---------TTG-CCTTAATAA chr2A_4 GAGCTTCA--CCTTCATCGACCGCCTTT---------TTT-CCTTAATAA chr2B_5 GAGCTTCA--CCTTCATCGTCCGCCTTT---------TTG-TCTTAATAA chr2D_5 GAGCTTCA--TCTTCATCGACCACCTTT-----------G-CCTTAATTA chr2B_13 GAGCTTCATCTCTTCATCTTCATCTTCGTCGATTGTCTTTGCCTTCATTA chr2B_31 GAGCTTCATCTCTTCATCTTCATCTTCGTCGATTGTCTTTGCCTTCATTA chr2B_31 GAGCTTCATCTCTTCATCTTCATCTTCGTCGATTGTCTTTGCCTTCATTA chr2B_31 -------------------------------------------------- chr2D_418 GATCTTCA--TCTTCATCTTC------GTCGAGTGTCTTTGCCTTCATTA chr2A_548 GAGCTTCA--TCTTCATCTTCATCTTCATCGAGTGTCTTTGCCTTCATTA chr2A_676 GAGCTTCA--TCTTCATCGACCGTCTTT-----------G-CCTTAACAA chr2B_691 TAGCTTCA--ACTTCATCGACCGCCTTT---------TTTGCCTTAATAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TG----TAAGGTCGTTGCTTCGGTTATCAATGGAGAAAAATGCCTCTTTT chr2D_1 TG----TAAGGTCATTGCTTCGGTTATCCATGGAGAAAAACACCTCTTTT chr2B_2 TG----TAAGGTCGTTGCTTCGGTTATCCATGGAGAAAAACGCCTCTTTT chr2A_4 TG----TAAGGTCATTGCTTCGGTTATCCATGCAGAAAAACACCTCTTTT chr2B_5 TG----TAAGGTCATTGCTGCAGTTGTCCATGGAGAAAAATGCCTCTTTT chr2D_5 TG----TAAGGTCATTGCTTCCGTTGTCCATAGAGAAAAATGCCTCTTTT chr2B_13 TGTAGGGTCATTGC---CTTCAGTTGTCAATAGAGAAAAATGCCTCTTTT chr2B_31 TGTAGGGTCATTGC---CTTCAGTTGTCAATAGAGAAAAATGCCTCTTTT chr2B_31 TGTAGGGTCATTGC---CTTCAGTTGTCAATAGAGAAAAATGCCTCTTTT chr2B_31 -------------------------------------------------- chr2D_418 TGTAGGGTCATTGC---CTTCAGTTGTCAATAGAGAAATATGCCTCTTTT chr2A_548 TGTAGGGTCATTGC---CTTCGGTTGTCAATAGAGAAATATGCCTCTTTT chr2A_676 TG----TAAGGTCATTGCTTCAGTTGTCCATAGAGAAAAATGCCTCTTTT chr2B_691 TGTGTATAAGGTCATTGCTTCAGTTGTCCATAGAGAAAAATGCCTCTTTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 ACTTCAGTTACTTCGCTGTAGACATCGTGCATTGCAGGGCGATCCTTCGG chr2D_1 ACTTCAGTGACTTCACTGTAGACATCGTGCATCACTGGGCGATCCTTCGG chr2B_2 ACTTCAGTTACTTCGCTGTAGACATCGCGCATTGCAGGGCGATCCTTCGG chr2A_4 ACTTCAGTTACTTCACTGTAGACATCGTGCATCGCTGGGCGATCCTTCGG chr2B_5 ACTTCAGTTACTTTGCCGTAGACATCATGCATCGTTGGGCGATCCTTTGG chr2D_5 ACTTCAGTTACTTCACCGTAGACATCATGCATCGCTGGGCGATCCTTCGG chr2B_13 ACTTCAGTTACTTCACCGTAGACATCATGCATCCCTGGGCGATCCTTCGG chr2B_31 ACTTCAGTTACTTCACCGTAGACATCATGCATCCCTGGGCGATCCTTCGG chr2B_31 ACTTCAGTTACTTCACCGTAGACATCATGCATCCCTGGGCGATCCTTCGG chr2B_31 -------------------------------------------------- chr2D_418 ACTTCAGTTACTTCGCCGTAGACATCATGCATCGCTGGGCGATCCTTCGG chr2A_548 ACTTCAGTTACTTCGCCGTAGACATCATGCATTGCTGGGCGATCCTTAGG chr2A_676 ATTTCAGTCACTTCACCGTAGACATCATGCATCGCTGGGCGGTCCTTCGG chr2B_691 ACTTCAGTTACTTCACCGTAGACATCATGCATCGTTGGTCGATCCTTCGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TGATTCCGCAGAGCATAATAAGCCAAGTTTAAGGAGACGGAGAGCACACA chr2D_1 TGATTCCGCAGAGCATAATAAGCCAAGTTTAAGGAGACGAAGAGCACACA chr2B_2 TGATTCCGCAGAGCATAATAAGCCAAGTTTAAGGAGACGGAGAGCACACA chr2A_4 TGATTCCGCGGAGCATAATAAGCCAAGTTTAAGGAGACGAAGAGCACACA chr2B_5 TGATTCCGCAGAGCATAATAAGCCAAGTTTAAAGAGACGGAGAGCACATA chr2D_5 TGATTCCGCAGAGCATAATAAGCCAAGTTTAAGGAGACGGAGAGCACATA chr2B_13 GGATTTCGCGGAGCATAATAAGCCAAGTCTAAGGAGCCGGAGAGTACA-A chr2B_31 GGATTTCGCGGAGCATAATAAGCCAAGTCTAAGGAGCCGGAGAGTACACA chr2B_31 GGATTTCGCGGAGCATAATAAGCCAAGTCTAAGGAGCCGGAGAGTACACA chr2B_31 -------------------------------------------------- chr2D_418 TGATTCCGCAGAGCATAATAAGCCAAGTCTAAGGAGCCGGAGAGCACATA chr2A_548 TGATTCCGCTGAGCATAATAAGCCAAGTCTAAGGAGCCGGAGAGCACAGA chr2A_676 TGATTCCGCGGAGCATAATAAGCCAAGTCTAAGGAGTCGGAGAGCACATA chr2B_691 CGATTCCGCAGAGCATAATAAGCCAAGTCTAAGGAGCCGGAGAGCACATA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TATCCTTCAGCGCAAATGTGTTGCATTCTTGCAAGTTTGGGATTTGATCA chr2D_1 TATCCTTCAGCGCAAATGTGTTGCATTCTTGCAAGTTTCGGATTTGATCA chr2B_2 TATCCTTCAGTGCAAATGTGTTGCATTCTTGAAAGTTTGGGATTTGATCA chr2A_4 TATCCTTCAGCGCAAATGTGTTGCATTCTTGCAAGTTTGGGATTTGATCA chr2B_5 TATGCTCCAGCGCAAATGTGTTGCATTCTTGCAAGTTTGGAATATGATCA chr2D_5 TATCCTTCAGCGCAAATGTGTTGCATTCTTGCAAGTTTGGGATATGATCA chr2B_13 TATCCTTTAGTGCAAATGTGTTGTGCTCTTGCAAGTTTGGGATATGACCG chr2B_31 TATCCTTTAGTGCAAATGTGTTGTGCTCTTGCAAGTTTGGGATATGACCG chr2B_31 TATCCTTTAGTGCAAATGTGTTGTGCTCTTGCAAGTTTGGGATATGACCG chr2B_31 -------------------------------------------------- chr2D_418 TATCCTTCAGTGCAAATGTGTTGTGCTCTTGCAAGTTTGGGATATGATCG chr2A_548 TGTCCTTCAGTGCAAATGTGTTGTGCTCTTGCAAGTTTGGAATATGATCG chr2A_676 TATCCTTCAGCACAAGTGTGTTGTATTCTTGCAAGTTTGGGGTATGATCG chr2B_691 TATCCTTCAATGCAAATGTGTTGTGTTCTTGCAAGTTTGGGATATGACCG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ------------------------------------------ATGTCTTG chr2B_1_TraesCS2B01G001800 GCAAACTGATCTCCCATCACCGAAGTAAGGCCGGGTTGAAGAATGTCTTG chr2D_1 GCAAACTGATCTCCCGTCACCAAAGTAAGGCTGGGTTGAAGAATATCTTG chr2B_2 ACAAACTGATCTCCCGTCACCGAAGCAAGGCCGGGTTGAAGAATGTCTTG chr2A_4 GCAAACTGATCTCCCCTCACCGAAGTAAGGCTGGGATGAAGAATGTCTTG chr2B_5 ACACACTGATCTCCCACCTCCGTAGTAAGGTTGGGTT---GAATGTCTTG chr2D_5 GCACACTGATCTCCCGTCTCCGAAGCAAGGCTGGGTTGAAGAATGTCTTG chr2B_13 ACACACTGATCTCCCGTCTCTAAAGTAAGACCGGGGTGAAGAATGCCTTG chr2B_31 ACACACTGATCTCCCGTCTCTAAAGTAAGACTGGGGTGAAGAATGTCTTG chr2B_31 ACACACTGATCTCCCGTCTCTAAAGTAAGACTGGGGTGAAGAATGTCTTG chr2B_31 -------------------------------------------------- chr2D_418 ACACGCTGATCTCCCGTCTCTAAAGTAAGACCGGGGTGAAGAATGTCTTG chr2A_548 ACACGCTGATCTCCCGTCTCTAAAGTAAGACCGGGGTGAAGAATGTCTTG chr2A_676 ACACACTGATTTGTCGTCTGTGAAGTAAGACCGGGGTGAAGAATGTCTTG chr2B_691 ACACACTGATCTCCCATCTCTGAAATAAGACTAGGGTGAAGAATGTCTTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GGTTCGTGAAAGTGA------TTCTTCCACATACTTGCGGAGCGTCAAGC chr2B_1_TraesCS2B01G001800 GGTTCGTGAAAGTGA------TTCTTCCACATACTTGCGGAGCGTCAAGC chr2D_1 GGTTCGTGAAAGTGA------TGCTTCTACATACTTGCGGAGCGTCAAGC chr2B_2 GGTTCGTGAAAGTGA------TGCTTCCACATACTTGCGGAGCGTCGAGC chr2A_4 GGTTCGTGAAAGTGA------TGCTTCTACATACTTGCGGAGCGTCAAGC chr2B_5 GGTTCGTGAAAGTGA------TGCTTCCACATACTTGCGGAGTGTCAAGC chr2D_5 GGTTCGTGAAAGTGA------TTCTTCTACATACTTGGGGAGTGTCAAGC chr2B_13 GGTTCGTGAAAGTGAAAGTGATGCATCTGCATACTTGTGGAGCGTCAAGC chr2B_31 GGTTCGTGAAAGTGAAAGTGATGCATCTGCATACTTGTGGAGCGTCAAGC chr2B_31 GGTTCGTGAAAGTGAAAGTGATGCATCTGCATACTTGTGGAGCGTCAAGC chr2B_31 -------------------------------------------------- chr2D_418 GGTTTGTGA------AAGTGATGCATCTACATACTTGTGGAGCGTCAAGC chr2A_548 GGTTCGTGAAAGTGA------TGCATCTACATACTTGTGGAGCGTCAAGC chr2A_676 GGTTCGTGAAAGCGA------TGCATCTACATACTTCCGGAGCGTCAAGC chr2B_691 GGTTCGTGACAGCGA------TGCATCTACATACTTGCGGAGCGTCAAGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CATCACTGAACTCTTCATTAGTAGGCCGTTTCCGTGTTAGCATTTCCAAA chr2B_1_TraesCS2B01G001800 CATCACTGAACTCTTCATTAGTAGGCCGTTTCCGTGTTAGCATTTCCAAA chr2D_1 CATCACTGAACTCTTCATTAGTAGGCCGTTTCCGTGTTAGCATTTCCAAA chr2B_2 CATCATTGAATTCTTCATTAGTAGGCCGTTTTCGTGTTAACATTTTCAAA chr2A_4 CATCACTGAACTCTTCATTAGTAGGCCGTTTCCGTGTTAGCATTTCCAAA chr2B_5 CATCACTGAACTCTTCACTAGTAGGCCGTTTCTGTGTTAGCATTTCCAAA chr2D_5 CATCACTGAACTCTTCATTAGTGGGCCGTTTCCGTGTTAGCATTTCCAAA chr2B_13 CATCACTAAACTCTTCATTGGTAGGCCGTTTCCGTGTAAGCA-TTCCAAA chr2B_31 CATCACTAAACTCTTCATTGGTAGGCCGTTTCCGTGTAAGCATTTCCAAA chr2B_31 CATCAATAAACTCTTCATTGGTAGGCCGTTTCCGTGTAAGCATTTCCAAA chr2B_31 -------------------------------------------------- chr2D_418 CATCACTGAACTCTTCATTGGTAGGCCGTTTCCGTGTAAGCATTTCCAAA chr2A_548 CATCACTGAACTCTTCATTGGTAGGCCGTTTCCGTGTAAGCATTTCCAAA chr2A_676 CGTCACTGAACTCTTCATTGGTAGGTCGTTTCCGTGTTAGCATTTCCAAA chr2B_691 CATCACTAAACTCTTCATTAGTAGGTCGTTTATGTGTTAGCATTTCCAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGAACAATGCCATAGCTGTAAATGTCTCCCTCGGTGGAGATTTCACCGCC chr2B_1_TraesCS2B01G001800 AGAACAATGCCATAGCTGTAAATGTCTCCCTCGGTGGAGATTTCACCGCC chr2D_1 AGAACAATGCCATAGCTGTAAATGTCTCCCTCGGTGGAGATTTCACCGCC chr2B_2 AGAACAATGCCATAGCTATAAATGTCTCCCTCAGTGGAGATTTCACCTCC chr2A_4 AGAACAATGCCATAGCTGCAAATGTCTCCCTCGGTGGAGATTTCACCGCC chr2B_5 AGAACAATGCCATAGCTGTAGATGTCTCCCTGGGTGGAGATTTCACCGCC chr2D_5 AGAACAATGCCATAGCTATAGATGTCTCCCTCAGTGGAGATTTCACTGCC chr2B_13 AGAACAATGCCATAGCTGTAGACGTCACCCTCGGTTGAGATTTCACTGCC chr2B_31 AGAACAATGCCATAGCTGTAGACGTCACCCTCGGTTGAGATTTCACTGCC chr2B_31 AGAACAATGCCATAGCTGTAGACGTCACCCTCGGTTGAGATTTCACTGCC chr2B_31 -------------------------------------------------- chr2D_418 AGAACAATGCCATAGCTGTAGACGTCACCCTCAGTTGAGATTTCACTGCC chr2A_548 AGAACAATGCCATAGCTGTAGACGTCACCCTCGGTTGAGATTTCACTGCC chr2A_676 AGAACAATGCCATAGCTGTAGACGTCTCCCTCGGTTGAGATTTCACAACC chr2B_691 AGAACAATGCCATAGCTGTAGACATCACCCTCGGTCGAGATTTCACTGCC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CATACCATACTCTGCAATAATGTTTGAAACAAAAA-GTTCTTCAGA-GAG chr2B_1_TraesCS2B01G001800 CATACCATACTCTGCAATAATGTTTGAAACAAAAA-GTTCTTCAGA-GAG chr2D_1 CATACCATACTCTGCAACAATGTTTT--TTTAAAGAGTTCTTCAGAGGAG chr2B_2 CATACCATACTCTGCGACAATGTTTTGAAACAAAAAGTTCTTCAGAGGAG chr2A_4 CATTCCATACTCTGCAACAATGCTTTTTTTAAAAGAGTTCTTCAGAGCAT chr2B_5 CATACCATACTCTGCAACAATGTTTTGAAAAAAAA-GTTCTTCAAAGGAG chr2D_5 CATACCATACTCTGCAACAATGTTTTGAAACCAAAAGTTATTCAGAGGAG chr2B_13 CATGCCATACTCTGCAAA---------AAACAAAAAGTTCTTCAACGGAG chr2B_31 CATGCCATACTCCGCAATAATGTTTTGAAACAAAAAGTTCTTCAACGGAG chr2B_31 CGTGCCATACTCCGCAATAATGTTTTGAAACAAAAAGTTCTTCAACGGAG chr2B_31 -------------------------------------------------- chr2D_418 CATGCCATACTCTGCAATAATGTTTTGAAACAAAAAGTTCTTCAGCGGAG chr2A_548 CATGCCATACTCTGCAATAATGTTTTGAAACAAAAAGTTCTTCAGCGGAG chr2A_676 CATGCCATACTCTGCAATAATGTTTGGAAGTAAAAAGTTCTTCAGTGGAG chr2B_691 CATGCCATACTCTGCAATAATGTTTTGAAACGAAAAGTTCTTCAGCGGAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------------------------S--S-------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CACATAA--TGAAACATGCTAGTATTAGT--AA-AAGCAGACTAGCAATT chr2B_1_TraesCS2B01G001800 CACATAA--TGAAACATGCTAGTATTAGT--AA-AAGCAGACTAGCAATT chr2D_1 CTCATAA--TGAAACATGCTAGTATTAGT--AA-AAGCAAACTAGCAATT chr2B_2 CTCATAA--TGAAACATGCTAGTGTTAGT--AA-AAGCAAGCTAGTAATT chr2A_4 CTCATAA--TGAAACATGCTAGTATTAGT--AA-AAGAAAACTAGCAATT chr2B_5 CTCAAAC--TAAAACATGATAGTATTAGT--AA-AA-AAAACTAGCGATT chr2D_5 CACA-AA--TGAAACATGCTAGTATTAGT--AA-AAACAAACTAGCAATT chr2B_13 TACA-AAAGTGAAACATGCTAGTATTAAT--AAAAAACAAACTAGCAACT chr2B_31 TACA-AAAGTGAAACATGCTAGTATTAAT--AAAAAACAAACTAGCAACT chr2B_31 TACA-AAAGTGAAACATGCTAGTATTAAT--AAAAAACAAACTAGCAACT chr2B_31 -------------------------------------------------- chr2D_418 TACA-AAAGTGAAACATGCTAGTATTAATAAAA-AAACAAACTAGCAACT chr2A_548 TACA-AAAGTGAAACATGCTAGTATTAAT--AACAAACAAACTAGCAACT chr2A_676 GTGA-AAA--------TGCTAGTATTGATAG----AAAAAACTTGCAACT chr2B_691 AACA-AAAGTGAAACATGTATATTAA--T--AA-AAAGAATCTAGCAGCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------------------S---------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GATACAATTACTCATACTAGATTTTG-CAACCTCATTTCAGAATGTGTTC chr2B_1_TraesCS2B01G001800 GATACAATTACTCATACTAGATTTTG-CAACCTCATTTCAGAATGTGTTC chr2D_1 GATATAGTTACTCATACTAGATTTTG-CAACGTCATTTCAGAATGTGTTC chr2B_2 GATACAGTTACTCATACTAGATTTCG-CAACCTCATTTCAGAATGTGTTC chr2A_4 GATATAGTTACTCATACTAGATTTTG-CAACGTCATTTCAGAATGTGTTC chr2B_5 GATACAATTACTCATACTAGACTTTGTCAATCTTATTTGAGAATGTGTTC chr2D_5 GATACAGTTACTCATACTAGATTTTTTCAACCTTATTTCAGAATGTGTTC chr2B_13 GATATAGTTAGTCATACTACATTTCATTAACATTATTTCATAATGGGCTT chr2B_31 GATATAGTTAGTCATACTACATTTCATTAACATTATTTCATAATGGGCTT chr2B_31 GATATAGTTAGTCATACTACATTTCATTAACATTATTTCATAATGGGCTT chr2B_31 -------------------------------------------------- chr2D_418 GATATAGTTAGTCATACTGCATTTCATTAACATTATTTCATAATGGGCTT chr2A_548 GATATAGTTAGTCATACTACATTTCGTTAACATTATTTCGTAATGGGCTT chr2A_676 GATATAGTTGATCAAACTAGATTTCGTTAACATTGTTTCAGAATGTGCTC chr2B_691 GATATAGTTAATCATACTAGATTTCGTTAACAT--------AATGTGCTT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATATAATGTACTCACCAGGAGGTATATACCCAATAGATCCCCTTGGTCAA chr2B_1_TraesCS2B01G001800 ATATAATGTACTCACCAGGAGGTATATACCCAATAGATCCCCTTGGTCAA chr2D_1 ATATAATGTACTCACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2B_2 ATATAATGTACTCACCAGGAGGTATGTACCCAATAGACCCCCTTAGTCCA chr2A_4 ATATAATGTACTCACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2B_5 ATAAAATGTACTCACCAGGAGGTATGTACCCAATAGACCCTCTTGGTCCA chr2D_5 ATAAAATGTACTCACCAGGAGGTATGTACCCAATAGACCCCCTTGGTCCA chr2B_13 GTAAAATATACTGACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2B_31 GTAAAATATACTGACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2B_31 GTAAAATATACTGACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2B_31 -------------------------------------------------- chr2D_418 GTAAAATATACTCACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2A_548 GTAAAATATACTGACCAGGAGGTATGTACCCAATAGATCCCCTTGGTCCA chr2A_676 GTAAAACATTCCCACCAGGAGGTATGCACCCAATAGATCCCCTTGGTCCA chr2B_691 GTAAAACATACTCACCAGGAGCTATGTACCCAATAGATCCCCTTGGTCCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------S----------------------S- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACTATGCTTGTTGTGCCGCTTTGCCCTCCAGATGAACAACCATGAATTAG chr2B_1_TraesCS2B01G001800 ACTATGCTTGTTGTGCCGCTTTGCCCTCCAGATGAACAACCATGAATTAG chr2D_1 ACTATGCTTGTTGTGCCACTCTGCCCTCCAGATGAACAACCATGAATTAG chr2B_2 ACTATGCTTGTTGTGCCGCTCTGCCCTCCAGATGAACAACCATGAATTAG chr2A_4 ACTATGCTTGTTGTGCCGCTCTGCCCTCCAGATGAACAACCATGAATTAG chr2B_5 ACTATGCTTGTTGTACCACTCTGCCCTCCAGATGAACAACCATGAATTAG chr2D_5 ACTATGCTTGTTGTGCCGCTCTGCCCTCCAGATGAACAACCATGAATTAG chr2B_13 ACTATGCTTGTTGTGTCGCTCTGCCCTCCAGATGAACACCCATGAATTAG chr2B_31 ACTATGCTTGTTGTGTCGCTCTGCCCTCCAGATGAACACCCATGAATTAG chr2B_31 ACTATGCTTGTTGTGTCGCTCTGCCCTCCAGATGAACACCCATGAATTAG chr2B_31 -------------------------------------------------- chr2D_418 ACTATGCTTGTTGTGCCGCTCTGCCCTCCAGACGAACATCCATGAATTAG chr2A_548 ACTATGCTTGTTGTGCCGCTCTGCCCTCCAGATGAACATCCATGAATTAG chr2A_676 ACTATGCTTGTTGTGCCGCTCTGCCCTCCAGATGAACATCCATGAATTAG chr2B_691 ACTATGCTTGTTGTGCCGCTCTGCTCTCCAGATGAACATCCATGAATTAG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------------------S----------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -CTATGCTTGTTGTGCCGCTT----------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTCTTAAA chr2B_1_TraesCS2B01G001800 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTCTTAAA chr2D_1 CTTTGCCAGACCAAAGTCGCAGAGACGTGCAGTATCGTCATTGTCGAAAA chr2B_2 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATTGTCATTGTCGAAAA chr2A_4 CTTTGCCAGACCAAAGTCGCAGAGACGTGCTGTATCGTCATTGTCAAAAA chr2B_5 CTTCGCCAGACCAAAGTCGCAGACACGTG--------------------- chr2D_5 CTTTGCCAAACCAAAGTCGCAGATACGTGCACTATCGTCATTGTCGAAAA chr2B_13 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTCGAAAA chr2B_31 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTCGAAAA chr2B_31 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTCGAAAA chr2B_31 -------------------------------------------------- chr2D_418 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTTGAAAA chr2A_548 CTTTGCCAGACCAAAGTCGCAGACACGTGCAGTATCATCATTGTCGAAAA chr2A_676 CTTCGCTAGACCAAAGTCAGAGACGCACGCAGTATTATCGTGGTCGAAAA chr2B_691 CCTTGCTAGACCAAAGTCACAGACACATGCCGTATCGTCGTTGTTGAAAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------------------------SS--- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GTATGTTGCTTGGTTTCAGATCACAGTGAACAACCGATGGGATGCACTGA chr2B_1_TraesCS2B01G001800 GTATGTTGCTTGGTTTCAGATCACAGTGAACAACCGATGGGATGCACTGA chr2D_1 GTATGTTGCTTGGTTTCAGATCGCAGTGAACAACTGGTGGGATGCACTGA chr2B_2 GTATGTTGCTTGGTTTCAGATCACAGTGAACAACCGGTGGGATGCACAGA chr2A_4 GTATGTTGCTTGGTTTCAGATCGCAGTGAACAACTGGTGGGATGCACTGA chr2B_5 -------------------------------------------------- chr2D_5 GTATGTTGCTTGGTTTCAGATCGCAGTGAACAACCGGTGGGATGCACTGG chr2B_13 GTATGTTGCTTGGTTTTAGGTCGCAGTGAACAACCGGTGGGATGCACTGG chr2B_31 GTATGTTGCTTGGTTTTAGGTCGCAGTGAACAACCGGTGGGATGCACTGG chr2B_31 GTATGTTGCTTGGTTTTAGGTCGCAGTGAACAACCGGTGGGATGCACTGG chr2B_31 -------------------------------------------------- chr2D_418 GTATGTTGCTTGGTTTTAGATCGCAGTGAACAACCGGTGGGATGCACTGG chr2A_548 GTATGTTGCTTGGTTTTAGATCGCAGTGAACAACCGGTGGGATGCACTGG chr2A_676 GTATGTTCCTTGGCTTCAGGTCACAGTGAACAACCGGCGGGATGCACTGG chr2B_691 GTATGTTGCCTGGTTTCATATCACAGTGAACAACTGGTGGGATGCATTGG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------------------S------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTATGTAGGTAATCAAGAGCACAAGCAATGTCAACTGATATGCATATCAC chr2B_1_TraesCS2B01G001800 TTATGTAGGTAATCAAGAGCACAAGCAATGTCAACTGATATGCATATCAC chr2D_1 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCACATCAC chr2B_2 TTATGTAGGTAGTCAAGAGCACAAGAAATATCAACTGATATGCATATCAC chr2A_4 TTATGTAGGTATTCAAGAGCACAAGCAACGTCAACTGATATGCATATCAC chr2B_5 -------------------------------------------------- chr2D_5 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCATATCAC chr2B_13 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCAGATCAC chr2B_31 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCAGATCAC chr2B_31 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCAGATCAC chr2B_31 -------------------------------------------------- chr2D_418 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATACAGATCAC chr2A_548 TTATGTAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCGGATCAC chr2A_676 TTATGGAGGTACTCAAGAGCACAAGCAATGTCAACTGATGTGCCTATCAC chr2B_691 TTATGGAGGTATTCAAGAGCACAAGCAATGTCAACTGATATGCATATCAT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------S-------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCGCCTAAGCTCAAACCACCACACTGGTGGTTACGGAGTCGGTTTTC-A chr2B_1_TraesCS2B01G001800 TGCGCCTAAGCTCAAACCACCACACTGGTGGTTACGGAGTCGGTTTTC-A chr2D_1 TGCGCCTAAACTCAAACCACCACACTGGTGGTTATGGAGTCGGTTTTC-A chr2B_2 TGCGCCTAAACTCAAACCACCACACTGGTGGTTATGGAGTCGGTTTTC-A chr2A_4 TGCGCCTAAACTCAAACCACCACACTGGTGGTTATGGAGTCGGTTTTCAA chr2B_5 -------------------------------------------------- chr2D_5 TGCGCCTAAACTCAAGCCACCACACTGGTGGTTATGAAGTCGGTCTTCAA chr2B_13 TGCGCCTAAACTCAAACCACCACACTGGTGGTTGTGAAGTCGGTCTTCAA chr2B_31 TGCGCCTAAACTCAAACCACCACACTGGTGGTTGTGAAGTCGGTCTTCAA chr2B_31 TGCGCCTAAACTCAAACCACCACACTGGTGGTTGTGAAGTCGGTCTTCAA chr2B_31 -------------------------------------------------- chr2D_418 TGCGCCTAAACTCAAAGCACCACACTGGTGGTTGTGAAGTCGGTCTTCAA chr2A_548 TGCGCCTAAACTCAAACCACCACACTGGTGGTTGTGAAGTCGGTCTTCAA chr2A_676 TGCCCCTAGACTCAGATCACCAACCTGGC---TATGAAGTCGGTTTTCAA chr2B_691 TGCGCCTAAACTCATATCACCACACTTGTGATTATGAAGTCTGTCTTCAA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------S------------------------S--------------- forward_6313 -------------------------------------------------- reverse_10535 ----------------------------------CGGAGTCGGTTTTCAA forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGGCTTCCGTTAGCCATATACTCAAATACTAGAGCCCTGAACTCATTTCC chr2B_1_TraesCS2B01G001800 AGGCTTCCGTTAGCCATATACTCAAATACTAGAGCCCTGAACTCATTTCC chr2D_1 AGGCTTCCATTACCCATATACTCAAATACTAGAGCCCTGAACTCATTTCC chr2B_2 AGGCTTCCGTTAGCCATGTACTCGAAGACTAGAGCCCTGAACTCATTTCC chr2A_4 AGGCTTCCATTACCCATATACTCAAATACTAGAGCCTTGAACTCATTTCC chr2B_5 -------------------------------------------------- chr2D_5 -GGCTTCCGTTGGACATATATTCAAAGACTAGAGCCCTGAACTCATTTCC chr2B_13 -GGCTCCCCTTGGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2B_31 -GGCTCCCGTTGGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2B_31 -GGCTCCCGTTGGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2B_31 -------------------------------------------------- chr2D_418 -GGCTCCCGTTGGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2A_548 -GGCTCCCGTTGGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2A_676 -GGCTGCCATTTGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2B_691 -GGCTACCGCTGGCCATATACTCAAAGACTAGAGCCCTGAACTCATTTCC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 GGCT---------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CACTGGGTCATAAGTTGAGCATGCGGTTATGACCTTCAAGAGATTCCGGT chr2B_1_TraesCS2B01G001800 CACTGGGTCATAAGTTGAGCATGCGGTTATGACCTTCAAGAGATTCCGGT chr2D_1 CACTGGGTCATAAGTTGAGCACGCGGTTATCACCTTCACGAGATTCCGGT chr2B_2 CACTGGGTCATAAGTTGAGCATGCGGTTATCACCTTCACGAGATTCCGGT chr2A_4 CACTGGGTCATAAGTTGAGCACGCGGTTATCACCTTCACGAGATTCCGGT chr2B_5 -------------------------------------------------- chr2D_5 CACTGGGTCATAAGTTGAGCACGCAGTTATTACCTTCACGAGATTCCGGT chr2B_13 CACTAGGTCATAAGTTGAGCATGCGGTTATCACCTTCATGAGATTCCGAT chr2B_31 CACTAGGTCATAAGTTGAGCATGCGGTTATCACCTTCACGAGGTTCCGAT chr2B_31 CACTAGGTCATAAGTTGAGCATGCGGTTATCACCTTCACGAGGTTCCGAT chr2B_31 -------------------------------------------------- chr2D_418 CACTAGGTCATAAGTTGAGCATGCAGTTATCACCTTCACGAGATTCCGAT chr2A_548 CACTAGGTCATAAGTTGAGCACGCGGTTATCACCTTCACGAGATTCCGAT chr2A_676 CACTAGGTCATAAGTTGAGCATGCAGTTATCACCTTCACAAGGTTCCGGT chr2B_691 CACTGGGTCATAAGTTGAGCATGCAGTTATAACCTTCACGAGATTCCGGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------------S-------S----------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GGCGGATGTGTTGCAATGCTTTGCACTCAGCAATGAAGCTATGCAATGCG chr2B_1_TraesCS2B01G001800 GGCGGATGTGTTGCAATGCTTTGCACTCAGCAATGAAGCTATGCAATGCG chr2D_1 GGCGGATGTGTTGCAATGCTTTGCACTCAGCAACGAAGCTATGCAATGCG chr2B_2 GGCGGATGTGTTGCAATGCTTTGCACTCAGCAATGAAGCTATGCAATGCG chr2A_4 GGCGGATGTGTTGCAATGCTTTGCACTCAGCAACGAAGCTATGCAATGCG chr2B_5 -------------------------------------------------- chr2D_5 GGCGGATGTGTTGCAATGCTTTGCACTCAGCAATGAAGCTATGCAATGCG chr2B_13 GGCGGATGTGTTGCAAAGCTTTGCACTCAGCAATGAAGCTATGCAATGCG chr2B_31 GGCGGATGTGTTGCAAAGCTTTGCACTCGGCAATGAAGCTATGCAATGCG chr2B_31 GGCGGATGTGTTGCAAAGCTTTGCACTCGGCAATGAAGCTATGCAATGCG chr2B_31 -------------------------------------------------- chr2D_418 GGCGGATGTGTTGCAAAGCTTTGCACTCAGCAATGAAGCTATGCAATGCA chr2A_548 GGCGGATGTGTTGCAAAGCTTTGCACTCAGCAATGAAGCTATGCAATGCG chr2A_676 GACGGATGTGTTTCAATGCCTTGCACTCAGCAATGAAGCTATCCAATGCG chr2B_691 GACGGATGTGTTGCAATGCTTTGCACTCAGCAATGAAGCTATGCAATGCA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CCGGGCTGATTGAGCTTGAAGACTTTAACAACAACCGTACCATCTTGTGC chr2B_1_TraesCS2B01G001800 CCGGGCTGATTGAGCTTGAAGACTTTAACAACAACCGTACCATCTTGTGC chr2D_1 CCATGCTGATTGAGCTTGAAGACTTTAACAGCAACTGTACCATCTTGTGC chr2B_2 CTATGCTGATTGAGCTTGAAGATTTTAATAGCAACCGTACCATCTTGTGC chr2A_4 CCATGCTGATTGAGCTTGAAGACTTTAACAGCAACTGTACCATCTTGTGC chr2B_5 -------------------------------------------------- chr2D_5 CCATGCTGGTTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCAC chr2B_13 CCATGCTGATTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCGC chr2B_31 CCATGCTGATTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCGC chr2B_31 CCATGCTGATTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCGC chr2B_31 -------------------------------------------------- chr2D_418 CCATGCTGATTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCGC chr2A_548 CCATGTTGATTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCGC chr2A_676 CCATGCTGATTGAGCTTGAATACTTTAATAGCAATTGTACCGTCTTCCAC chr2B_691 CCGTGCTGATTGAGCTTGAAGACTTTAACAGCAACCGTACCATCTTCCGC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---S--------------------------S------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 ------------------------------ACAACCGTACCATCTTGTGC forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GTCGAACCAGCCTTTGTAGACGGTCCCAAATTGCCCGGAGCCGACTACAT chr2B_1_TraesCS2B01G001800 GTCGAACCAGCCTTTGTAGACGGTCCCAAATTGCCCGGAGCCGACTACAT chr2D_1 ATCGAACCAGCCTTTGTAGACAGTCCCAAATTGCCCGGAGCCGACTACAT chr2B_2 GTCGAACCAGCCTTTGTAGACAGTCCCAAATTGCCCGGAGCCGACTACAT chr2A_4 ATCGAACCAGCCTTTGTAGACAGTCCCAAATTGCCCGGAACCGACTACAT chr2B_5 -------------------------------------------------- chr2D_5 GTCGAACCAACCTTTGTAGACTATACCAAATTGCCCGGAACCGACTAGGT chr2B_13 GTCGAACCAACCTTTGTAGACAGTCCCAAATTGCCCGGAGCCGACCACAT chr2B_31 GTCGAACCAACCTTTGTAGACAGTCCCAAATTGCC-GGAGCCGACCACAT chr2B_31 GTCGAACCAACCTTTGTAGACAGTCCCAAATTGCC-GGAGCCGACCACAT chr2B_31 -------------------------------------------------- chr2D_418 GTCGAACCAACCTTTGTAGACAGTCCCAAATTGCCCGGAGCCGACTACAT chr2A_548 GTCGAACCAACCTTTGTAGACAATCCCAAATTGCCCGGAGCCGACTACAT chr2A_676 GTTGAACGAACCTTTGTAAACTATCCCGACTTGCCCGGAACCCACTACAT chr2B_691 GTCGAACCAACCTTTGTAGACAGTCCCAAATTGCCCGGAGCCAACTACGT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------S---------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 --CGAACCAGCCTTTGTAGACG---------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGACTAGGGAAAAATTATCCGTTGCATTGTTAACATCACTATATGTTATC chr2B_1_TraesCS2B01G001800 TGACTAGGGAAAAATTATCCGTTGCATTGTTAACATCACTATATGTTATC chr2D_1 TGACTAGGGAAAAATTATCCGTTGCATTGTTAACATCACTATATGTTATC chr2B_2 TGACTAGGGAAAAATTATCCGTTGCATTGTTAACATCACTATATGTTATC chr2A_4 TGACTAGGGAAAAATTATCCGTTCCATTGTTAACATCACTATATGTTATC chr2B_5 -------------------------------------------------- chr2D_5 TGGCCGGAGAAAAAGTATTCGTTGCTTTGTTGACGTCACCATATGTTATC chr2B_13 TGGCTAGAGAAAGACTATTTGTTGCTTTGATTACGTCACCGTATGTTATC chr2B_31 TGGCTAGAGAAAGACTATCTGTTGCTTTGATTACGTCACCGTATGTTATC chr2B_31 TGGCTAGAGAAAGACTATCTGTTGCTTTGATTACGTCACCGTATGTTATC chr2B_31 -------------------------------------------------- chr2D_418 TGGCTAGAGAAAGACTATCTGTTGCTTTGATTACGTCACCATATGTTATC chr2A_548 TGGCTAGAGAAAGACTATCTGTTGCTTTCATTACGTCACCGTATGTTATC chr2A_676 TTGCTGGAGAAAAACTATTTGTTGCTTTGTCGACGTCACCATATGTTATT chr2B_691 TGGCTAGAGAAAGACTATCCGTTGCTTTGATTATGTCACCATATGTTATC chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTTTTCAGCTCCATGTATGAATGGACAATGTTCTCATTGGATTTGTACCC chr2B_1_TraesCS2B01G001800 CTTTTCAGCTCCATGTATGAATGGACAATGTTCTCATTGGATTTGTACCC chr2D_1 CTTTTCAGCTCCATGTATGAATGGACAATGTTCTCATTGGATTTGTACCC chr2B_2 CTTTTCAGCTCCATGTATGAATGGACAATGTTCTCATTGGATTTGTACCC chr2A_4 CTTTTCAGCTCCATGTATGAATGGACAATGTTCTCATTGGATTTGTACCC chr2B_5 -------------------------------------------------- chr2D_5 CTTTTCAGCTCCATGTGTGAATGGCCAATTCTCTCACTAGATGTATACCT chr2B_13 CTTTTCAACTCCATGTATGAATGGCCAATTCTCTCACCGGATGTGTATCT chr2B_31 CTTTTCAACTCCATGTATGAATGGCCAATTCTCTCACCGGATGTGTATCT chr2B_31 CTTTTCAACTCCATGTATGAATGGCCAATTCTCTCACCGGATGTGTATCT chr2B_31 -------------------------------------------------- chr2D_418 CTTTTCAACTCCATGTATGAATGGCCAGTTCTCTCACCGGATGTGTATCT chr2A_548 CTTTTCAACTCCATGTATGAATGGCCAATTCTCTCACCGGATGTGTATCT chr2A_676 CTCTTCAGCTCCATGTATGAATGGCCAATTCTCTCACATGATGTATACCT chr2B_691 CTTTTCATCTCCATGTATGAATGGCCAATTCTCTCACTGGATTTGTATCT chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CCTCTTCAACCAGAAAATGAACATCCCCAAGATCAAAGCTAGTGCAGCAA chr2B_1_TraesCS2B01G001800 CCTCTTCAACCAGAAAATGAACATCCCCAAGATCAAAGCTAGTGCAGCAA chr2D_1 CCTCTTCAACCAAAAAATGAACATCCCCAAGATCAAAGCCAGTGCAGCAA chr2B_2 CCTCTTCAACCAGAAAATGAACATCCCCAAGATCAAAGCTAGTGCAGCAC chr2A_4 CCTCTTCAACCAGAAAATGAACATCCCCAAGATCAAAGCCAGTGCAGCAA chr2B_5 -------------------------------------------------- chr2D_5 CCTCTTCAACCAGAAACTGAACATCCCCAAGATAAAAGCAAGGGCAACAA chr2B_13 CCTTCTCAACCAAAAATTGAACACCCCCAAGATTAAGGCAAGTGCAACAA chr2B_31 CCTTCTCAACCAAAAATTGAACACCCCCAAGATTAAGGCAAGTGCGACAA chr2B_31 CCTTCTCAACCAAAAATTGAACACCCCCAAGATTAAGGCAAGTGCGACAA chr2B_31 -------------------------------------------------- chr2D_418 CTTTCTCAACCAAAAATTGAACACCCCCAAGATTAAAGCAATTGCGACAA chr2A_548 CCTTCTCAACCAAAAACTGAACACCCCCAAGATTAAAGCAAGTGCGACAA chr2A_676 TCGCTTCAACAAAAAATTGAACATACCCAAGATCAAAGCAAGTGTAACCA chr2B_691 CCTTCTCAACCAAAAATTGAACACCCCCAAGAGCAAAGCAAGTGCAACGA chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAGCTGATAGAGCTATCAACACTGGAATGACAAACTTGTGTTCTTTTGTG chr2B_1_TraesCS2B01G001800 GAGCTGATAGAGCTATCAACACTGGAATGACAAACTTGTGTTCTTTTGTG chr2D_1 GGCCTGATAGGGCTATCAACACTGGGATGACAAACTTGTGTTCTTTTGTG chr2B_2 GAGCTGATAGAGCTATCAACACTGGGATGACAAACTTGTGTTCTTTTGTG chr2A_4 GGCCTGATAGGGCTATCAACACTGGGATGACAAACTTGTGTTCTTTTGTG chr2B_5 -------------------------------------------------- chr2D_5 GAGCTGAGAGAGCTATCATCATTGGAATGACAACCTTTTGCTTTTTTGTG chr2B_13 GAGCTAACAGAGCTATCATCATAGGAACAAAATACTTTTGCTTTTTTGTG chr2B_31 GAGCTGACAGAGCTATCATCATAGGAACAAAATACTTTTGCTTTTTTGTG chr2B_31 GAGCTGACAGAGCTATCATCATAGGAACAAAATACTTTTGCTTTTTTGTG chr2B_31 -------------------------------------------------- chr2D_418 GAGCTGACAGAGCTATCATCATAGGAACAAAAAACTTTTGATTTTTTGTG chr2A_548 GAGCTGACAGAGCTATCATCATAGGAACAAAAAACTTTTGCTTTTTTGTG chr2A_676 GAGTTGATAGAGCTATCATCATCGGAATGAAAAACTTGTGCTTTTTTG-- chr2B_691 GAGTTGACAGAGCTATCAGGATAGGAATGACGAACTTGTGTTTTTGTGTG chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GGTAACTACCGAAACTACCGGTCCATCAAATCTGGAAAGGTCAAAAACTA chr2B_1_TraesCS2B01G001800 GGTAACTACCGAAACTACCGGTCCATCAAATCTGGAAAGGTCAAAAACTA chr2D_1 GGTA---------------------------------------------- chr2B_2 GGTA---------------------------------------------- chr2A_4 GGTA---------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 G------------------------------------------------- chr2B_13 G------------------------------------------------- chr2B_31 G------------------------------------------------- chr2B_31 G------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 G------------------------------------------------- chr2A_548 G------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 G------------------------------------------------- chr2D_2046 ----------GAAACTACAGGCCCATCAAATCTGGAAAGGTCAAAAACTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----SSSSSS--------S--S---------------------------S forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGAGGCGCAAACAAAATAATCCAGCTGATGATCCTACTAAACAGTTATTG chr2B_1_TraesCS2B01G001800 AGAGGCGCAAACAAAATAATCCAGCTGATGATCCTACTAAACAGTTATTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGAGGCGCAAACAAAATAATCCAGCTGATGATCCTACTAAACAGTTATTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GATGATAATATTTCCATAAGGAAAAAGGTGTGTATAGCTGGCCCTCTTAT chr2B_1_TraesCS2B01G001800 GATGATAATATTTCCATAAGGAAAAAGGTGTGTATAGCTGGCCCTCTTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GATGATAAGATTTCCATAAGGAAAAAGGTGTGTATAGCTGGTCCTCTTAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------S--------------------------------S-------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTTCCTTAGTATGATGAAATGTAGCTTCTTCTTGACACGGTCCATGTGTG chr2B_1_TraesCS2B01G001800 CTTCCTTAGTATGATGAAATGTAGCTTCTTCTTGACACGGTCCATGTGTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTTCCTTAGTATGATGAAATGTAGCTTCTTCTTGACACGGTCCATGTGTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------S forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GGTTATGTAAATCTAGGAGGTATTGAATTGTTAATTATGTTAGCTTCTTT chr2B_1_TraesCS2B01G001800 GGTTATGTAAATCTAGGAGGTATTGAATTGTTAATTATGTTAGCTTCTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GGTTATGTAAATCTAGGAGGTATTGAATTGTTAATTATGTTAGCTTCTGT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------------------------------S- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATGAAGATTGTCATTAATATGTTTGGGAGATAGTT-TTTTAATATGTAAC chr2B_1_TraesCS2B01G001800 ATGAAGATTGTCATTAATATGTTTGGGAGATAGTT-TTTTAATATGTAAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATGAAGATTGTCATTAATATGTTTGGGAGATAGTTCTTTTTATATGTAAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------------------S--------S forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCATCTCTATAGAAGTTGGAGCTGATGAAATTGTAAGTGCTTTAGTGGG chr2B_1_TraesCS2B01G001800 TGCATCTCTATAGAAGTTGGAGCTGATGAAATTGTAAGTGCTTTAGTGGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCATCTCTATAGAAGTTGGAGCTGATGAAATTGTAAGTGCTTTAGTGGG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTGGAACAACATACTACCTCTGTACTGAAATACTTGTAGCTAGGGAAAAC chr2B_1_TraesCS2B01G001800 TTGGAACAACATACTACCTCTGTACTGAAATACTTGTAGCTAGGGAAAAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCGGAACAACA--------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TAGTACAAGTTCCCCCAACTACAAGTATTTTGGTACAGAGGGAGTAGTAT chr2B_1_TraesCS2B01G001800 TAGTACAAGTTCCCCCAACTACAAGTATTTTGGTACAGAGGGAGTAGTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 --------------------------------------------TAGTAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 ----ACAAGTTCCCCCAACTACAAGT------------------------ forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATTAAAATTTGTAAGTTTTGACATATTACAATG----------------- chr2B_1_TraesCS2B01G001800 ATTAAAATTTGTAAGTTTTGACATATTACAATG----------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATTAAAATTTGTAAGTTTTGACATATTACAATGAGCTAGCTATGGACAGG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GGTGCGTGGAAGCTTGCTATCCATGTGCCAGAGCCATGAGTTGGTTGCGA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GATCTTATGGGTTTCACTTCTAGCCTACCCCAACTTGTTTGGGACTAAAG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ----------------------------------CATTGCATGGAAGCTT chr2B_1_TraesCS2B01G001800 ----------------------------------CATTGCATGGAAGCTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GCTTTGTTGTTGTTGTTGTTGACATATTACAATGCATTGCATGGAAGCTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAAATATGGCCAGATTTACTACTTCGTGTCTGGTGCTGGATTTCTCTCTC chr2B_1_TraesCS2B01G001800 GAAATATGGCCAGATTTACTACTTCGTGTCTGGTGCTGGATTTCTCTCTC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GAAACATGGCCAGATTTACTACTTCGTGTCTGGTGCTGGATTTCTCTCTC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTCTAATCTTCTGCATATTTAACTTCACACAGCTCAAAATGTTAAATCGA chr2B_1_TraesCS2B01G001800 TTCTAATCTTCTGCATATTTAACTTCACACAGCTCAAAATGTTAAATCGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTCTAATCTTCTGCATATTTAACTTCACACAGCTCAAAATGTTAAATCGA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATAGCTACAGTCAAGGATGATGGAACTGTGGTTGTTAATGTACCAAGTAC chr2B_1_TraesCS2B01G001800 ATAGCTACAGTCAAGGATGATGGAACTGTGGTTGTTAATGTACCAAGTAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATAGCTACAGTGAAGGATGATGGAACTGTGGTTGTTAATGTACCAAGTAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------S-------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TCTAGAAGCGACTCCAATTGACGTTGGAGCAGTGGATGGCTATGAGGATG chr2B_1_TraesCS2B01G001800 TCTAGAAGCGACTCCAATTGACGTTGGAGCAGTGGATGGCTATGAGGATG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCTAGAAGCGACTCCAATTGACGTTGGAGCAGTGGATGGCTATGAGGATG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTGTTGTTGAAGAATCATTAGATGGATCAGATATACCATACAGACCTCCA chr2B_1_TraesCS2B01G001800 TTGTTGTTGAAGAATCATTAGATGGATCAGATATACCATACAGACCTCCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTGTTGTTGAAGAATCATTAGATGGATCAGATATACCATACAGACCTCCA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATACAGATTGTTATACTTATCGTGGGTACAAGGGGAGACGTTCAGCCATT chr2B_1_TraesCS2B01G001800 ATACAGATTGTTATACTTATCGTGGGTACAAGGGGAGACGTTCAGCCATT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATACAGATTGTTATACTTATCGTGGGTACAAGGGGAGACGTTCAGCCATT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGTTGCAATAGGAAAACGCTTACAGGTTAGCCCAAGCTAATATTATTGTT chr2B_1_TraesCS2B01G001800 TGTTGCAATAGGAAAACGCTTACAGGTTAGCCCAAGCTAATATTATTGTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGTTGCAATAGGAAAACGCTTACAGGTTAGCCCAAGCTAATATTATTGTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AATCTCATATTATTGTTTGCTAACTCCGAGTAGTTCCATGAGCTTCTCTT chr2B_1_TraesCS2B01G001800 AATCTCATATTATTGTTTGCTAACTCCGAGTAGTTCCATGAGCTTCTCTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AATCTCATATTATTGTTTGCTAACTCCGATTAGTTCCATGAGCTTCTCTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------S-------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CCAATTTAATGTCGTCACATTTATG-TTTTTTTAGTATGACGAAGATCAG chr2B_1_TraesCS2B01G001800 CCAATTTAATGTCGTCACATTTATG-TTTTTTTAGTATGACGAAGATCAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CCAGTTTAATGTCATCACATTTATGTTTTTTTTAGTATGACAAAGATCAG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---S---------S---------------------------S-------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTATCACCTTTATTGTAGGATTATGGACACCGTGTGAGATTAGCCACTCA chr2B_1_TraesCS2B01G001800 TTATCACCTTTATTGTAGGATTATGGACACCGTGTGAGATTAGCCACTCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTATCACCTTTATTGTAGGATTATGGACACCGTGTGAGATTAGCCACTCA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCTAACTATAAGGAGTTCATACTCACATCCGGGCTGGAGTTTTTTCCAC chr2B_1_TraesCS2B01G001800 TGCTAACTATAAGGAGTTCATACTCACATCCGGGCTGGAGTTTTTTCCAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCTAACTATAAGGAGTTCATACTCACAGCTGGGCTGGAGTTTTTTCCAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------S-S------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGGGTGGAGATCCAAAAGTACTTGCTGAATGTATGTTTTTCAGTGATTAT chr2B_1_TraesCS2B01G001800 TGGGTGGAGATCCAAAAGTACTTGCTGAATGTATGTTTTTCAGTGATTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGGGTGGAGATCCAAAAGTACTTGCTGAATGTATGTTTTTTAGTGATTAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTTTTTCTAACTTCCATATCAGATGAAGATTAATATTTTTGCTACATTCA chr2B_1_TraesCS2B01G001800 TTTTTTCTAACTTCCATATCAGATGAAGATTAATATTTTTGCTACATTCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTTTTTCTAACTTCCATATCAGATGAAGATTAATATTTTTGCTTCATTCA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------S------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTTCGAGCAGACATGGTGAAGAATAAAGGGTTCCTACCTTCAGGCCCATC chr2B_1_TraesCS2B01G001800 CTTCGAGCAGACATGGTGAAGAATAAAGGGTTCCTACCTTCAGGCCCATC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTTCGAGCAGACATGGTGAAGAATAAAGGGTTCCTACCTTCAGGCCCATC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 --------------------------------CCTACCTTCAGGCCCATC reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATAAATTCCTGTTCAAAGAAAACAAATGAAAGAAATTATATTTTCCCTAC chr2B_1_TraesCS2B01G001800 ATAAATTCCTGTTCAAAGAAAACAAATGAAAGAAATTATATTTTCCCTAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGAAATTCCTGTTCAAAGAAAACAAATGAAAGAAATTATATTTTCCCTAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -S------------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 AT------------------------------------------------ reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCCTGCATGCAAGGATCCTGACCCTGATACCGGTATTGCTTTCAAAGTG chr2B_1_TraesCS2B01G001800 TGCCTGCATGCAAGGATCCTGACCCTGATACCGGTATTGCTTTCAAAGTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCCTGCATGCAAGGATCCTGACCCTGATACCGGTATTGCTTTCAAAGTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GATGCAATTATTGCGAACCCACCAGCATATGGTCAGTATATTTTGTTTAC chr2B_1_TraesCS2B01G001800 GATGCAATTATTGCGAACCCACCAGCATATGGTCAGTATATTTTGTTTAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GATGCAATTATTGCGAACCCACCAGCATATGGTCAGTATATTTTGTTTAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTTGAATTATTTTTTATGACTGAAACACAAAGCTCATTTATTAATAGTAA chr2B_1_TraesCS2B01G001800 TTTGAATTATTTTTTATGACTGAAACACAAAGCTCATTTATTAATAGTAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTTGAATTATTTTTTATGACTGAAACACAAAGCTCATGTATTAATAGTAA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------S------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACAACCTCAGTGGCAAACCGTAAAATATCAGTTCTAGACAGGATGAGGGT chr2B_1_TraesCS2B01G001800 ACAACCTCAGTGGCAAACCGTAAAATATCAGTTCTAGACAGGATGAGGGT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACAACCTCAGTAGCAAACCGTAAAATATCAGTTCTAGACAGGATGAGGGT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------S-------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CATCTTATGATG-TGCCTCAAAAATCATGGTTATAATGATTACAAGGTGC chr2B_1_TraesCS2B01G001800 CATCTTATGATG-TGCCTCAAAAATCATGGTTATAATGATTACAAGGTGC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CATCTTATGATCATGCCTCAAAAATCTTGGTTATAATGATTACAAGGTGC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------S--------------S----------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACAAATACTATTCTACATGGTTCTTATATAGGATCGGGATTGAATTCTCC chr2B_1_TraesCS2B01G001800 ACAAATACTATTCTACATGGTTCTTATATAGGATCGGGATTGAATTCTCC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 A-AAATACTATTCTACATGGTTCTTATATAGGATCGGGATTGAATTCTCC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -S------------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CACATGATCATAAGATTCTGTAATATTGTTTGAATCTTATCAACCTCACT chr2B_1_TraesCS2B01G001800 CACATGATCATAAGATTCTGTAATATTGTTTGAATCTTATCAACCTCACT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CACATGACCATAAGATTCTGTAATATTGTTTGAATCTTATCAACCTCACT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------S------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CATGCACAATTTATTCTTACAACATTCAGTTTGGTTATTTTCTGATTTGA chr2B_1_TraesCS2B01G001800 CATGCACAATTTATTCTTACAACATTCAGTTTGGTTATTTTCTGATTTGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CATGCACAATTTATTCTTACAACATTCAGTTTGGTTATTTTCTGATTTGA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GATTAATTTCATTAAAGGA----------ACCAAAGAAAACTAGCCATGG chr2B_1_TraesCS2B01G001800 GATTAATTTCATTAAAGGA----------ACCAAAGAAAACTAGCCATGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GATTAATTTCATTAAAGGACTGGAATATCACCAAAGAAATCTAGCCATGG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------------------S---------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACAGGGGCGCGTGGAAGCTAGCTATCCATGTGCCAGAACCATGAGTTGGT chr2B_1_TraesCS2B01G001800 ACAGGGGCGCGTGGAAGCTAGCTATCCATGTGCCAGAACCATGAGTTGGT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACAGGGGCGCGTGGAAGCTAGCTATCCATGTGCCAGAACCTTGAGTTGGT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCGAGATCTTATGGTCTTCAGCTCTAGCCTGCCCCAACTTGTTT-GGAC chr2B_1_TraesCS2B01G001800 TGCGAGATCTTATGGTCTTCAGCTCTAGCCTGCCCCAACTTGTTT-GGAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCGAGATCTTATGGGTTTCAGCTCTAGCCTACCCCAACTTGTTTGGGAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------SS--------------S------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 ----------------CTTCAGCTCTAGCCTGCCC--------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TAAAAGGCTTCGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGAGATTAATT chr2B_1_TraesCS2B01G001800 TAAAAGGCTTCGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGAGATTAATT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAAAAGGCTTCGTTGTTGTTGTTGT---------GTTGTTGAGATTAATT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------SSSSSSSSS---------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TCATTGCGGACCAGTTTTGTAGAGATAGATCAATTTATTATTTATGCTTT chr2B_1_TraesCS2B01G001800 TCATTGCGGACCAGTTTTGTAGAGATAGATCAATTTATTATTTATGCTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCATTGCAGAACAGTTTTGTAGAGATAGATCAATTTATTATTTATGCTTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------S--S--------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGCATGTTCATGGACCAGTTTTGTAGAGATAGATC--------------- chr2B_1_TraesCS2B01G001800 AGCATGTTCATGGACCAGTTTTGTAGAGATAGATC--------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGCATGTTCATGGTGTGCTTTGTCTTGTGCCATACTAATAACAGCTTTGC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------SSSSS---SSSSSSSSSSSSS---------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTAGTAATGTAAACTCATACAGTTATCTTTTGGTTTCACCTTTCCTCTAG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGGCATCTCGTTTCTGCCAGGGCACATGTTTGGTTAATTTCTGTTGTCTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CCATTCTTGGAATTCAAGATTACGAATGGTAAAGAGAAAAAGAAAGAACA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AAGAGGAATAGTCATAATCTGAATGAACTGCACCTCATGACTAAATGCAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AAATTTGATTTATACGACCAAAATCGGACCAGCTCTTTTTTTTATCAAGA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTACTTATGACAATAAACACTCACCCAGTTTCTTTGTATGTGAAAATCAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CAAAAGGACATCTTATCTTGAGGGGTGAGTTAACATTTAAAACCTTGACT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCACTACGTAAACCTACCAGCATGGTGAAATCATCCTAAAAACCAGATCC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACGTTATAATTTGGTCTGCTCAAGTCGAAAGCGTTAAATGCTGGTTAAAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAGAGAGTGCTATACAGAACCATCCACAAAGTAGGTAGTGGAGTATGGAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTTTTCCTCTTTTCAAATAGGGCATGGCAAATGTTAGGAGATGAAATGAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACTAAAACCTTTTAGTTTCAGCTATTCGACTGATGGCAAAACCACAATGG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGTGGTTCTCTGTTCCAACTTGTAGTTTTTAAATGTGAGGGTTTTGGTCC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATGCTGAATGGTGTGATTTTCCATACGCGTCCATATATTATGAGGTCTGC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ------------------------------------------AATTTTAT chr2B_1_TraesCS2B01G001800 ------------------------------------------AATTTTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGTTGTGTCCCTTATGTGTTAATGTGTGCCTTTCTATCACTAAATTTTAT chr2B_3969 -----------------------------------------------TAT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTTTGCATATTTTCCCCTTTTATGATCCGGATAAGCA---------ACTT chr2B_1_TraesCS2B01G001800 TTTTGCATATTTTCCCCTTTTATGATCCGGATAAGCA---------ACTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTTTGCATATTTTCCCCTTTTATGATCTGGATAAGCA---------ACTT chr2B_3969 TTTCGCATATTTTCCCCTTTTATGATCTAGATAAGCATGTTAATTTACTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------S---------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GATTACCATATTTTACCATTACAACTATGTCATCCTGCTGACCTCAATAT chr2B_1_TraesCS2B01G001800 GATTACCATATTTTACCATTACAACTATGTCATCCTGCTGACCTCAATAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GATTACCATATTTTACCATTACAACTATGTCATCCTGCTGACCTCAGTAT chr2B_3969 GATTACCATGTTTTACAATTACAACTGCGTGATCTTTCTGACCTCAATAT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTATTTAGGACATACACATGTGGCAGAGGCGCTAAAAGTACCCATTCATA chr2B_1_TraesCS2B01G001800 TTATTTAGGACATACACATGTGGCAGAGGCGCTAAAAGTACCCATTCATA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTATTCAGGACATACACATGTGGCAGAGGCACTAAAAGTACCCATTCATA chr2B_3969 ATATTCAGGACATACACATGTGGCAGAGGCACTAAAAGTACCCATTCATA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----S------------------------S------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -----------ATACACATGTGGCAGAGGCG------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TATTCTTTACCATGCCATGGACGTGAGTCATTTTTGTTCTGCTTCCTCTT chr2B_1_TraesCS2B01G001800 TATTCTTTACCATGCCATGGACGTGAGTCATTTTTGTTCTGCTTCCTCTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TATTCTTTACCATGCCATGGACGTGAGTCATTTTTGTTCTGCTTCCTCTT chr2B_3969 TATTCTTTACCATGCCATGGACGTGAGTCACTGTTGTTCTGCCTCCTCTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGAAAGACAGTTGCTGATGAATACTGTCATTTGGAGATCTAACATATGCT chr2B_1_TraesCS2B01G001800 TGAAAGACAGTTGCTGATGAATACTGTCATTTGGAGATCTAACATATGCT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGAAAGACAGTTGCTGATGAATACTGTCATTTGGAGATCTAACATATGCT chr2B_3969 TGAAGACAA-TTGTTGATGAATACTGTCATTTTCAGATCTAACATATGCT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GCTTGTTCAGGCCAACTAGCGAATTTCCTAATCCTCTTTCTCGAGTGAAA chr2B_1_TraesCS2B01G001800 GCTTGTTCAGGCCAACTAGCGAATTTCCTAATCCTCTTTCTCGAGTGAAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GCTTGTTCAGGCCAACTAGCGAATTTCCTCATCCTCTTTCTCGAGTGAAA chr2B_3969 ACTTGTTCAGGCCAACTAGCGAATTTCCTCATCCTCTTTCTCACGTGAAA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------S-------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACATCAGCTGGATATCGAGTGAGTTCACATTGTATTTACTTATTTGATCT chr2B_1_TraesCS2B01G001800 ACATCAGCTGGATATCGAGTGAGTTCACATTGTATTTACTTATTTGATCT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACATCAGCTGGATATCGAGTGAGTTCACATTGTATTTACTTATTTGTTCT chr2B_3969 ACATCAGCTGGATATCGAGTGAGTTCATGTTGTATTTACTTATTTGTTAA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------------------------S--- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GGGTATCGAGTGACTAATGTGAAGCTTTTCTAAATCATTGCAAATTTCAT chr2B_1_TraesCS2B01G001800 GGGTATCGAGTGACTAATGTGAAGCTTTTCTAAATCATTGCAAATTTCAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GGGTATCGAGTGACTAATGTGAAGCTTTTCTAGATCATTGCAAATTTCAT chr2B_3969 GTGTATCGATTGACTACTGTGAACCCTTTCTAAATCATTGCAAATTTCAT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAAAAGGAACACAAAAATTGGTACTTGTGCAAATTATTTTAAGAAAGAAA chr2B_1_TraesCS2B01G001800 GAAAAGGAACACAAAAATTGGTACTTGTGCAAATTATTTTAAGAAAGAAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GAAAAGGAACACAAAAATCGGTACTTGTGGAAATTAGTTTAAGAAAAAAA chr2B_3969 GAAAAGGAACAAAAAAATAGGTACATGTGGAAATTATTTTAT-AAAGAAA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------S----------S-------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAAATAAAGAAGAAAAACTTTGCCATCTGTTATTATTTGTCTTCCACCTT chr2B_1_TraesCS2B01G001800 GAAATAAAGAAGAAAAACTTTGCCATCTGTTATTATTTGTCTTCCACCTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GAAAAAAAGAAGAAAAACTTTGCCATCTGTTATTATTTGTCTTCCACCTT chr2B_3969 TAAATAAAAAAGAAAAACTTTGCCATCTGTTATTATTCGACTTACACCTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GTCTTTGGATGTGTTTAAGTTTGAGGTCCATCTGATCGTATGGAGTAGTA chr2B_1_TraesCS2B01G001800 GTCTTTGGATGTGTTTAAGTTTGAGGTCCATCTGATCGTATGGAGTAGTA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GTCTATGGATGTGTTTAAGTTTGAGGTCCATCTGATCGTATGGAGTAGTA chr2B_3969 GTCTATGAGTTAAAAATTT-----GGTCCATTTGATCCTATGGAGTAGTA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CATCACTAGCGTGTTTTCTTTTTTGCCGTAGTGAATCCCAATTGAGTAGT chr2B_1_TraesCS2B01G001800 CATCACTAGCGTGTTTTCTTTTTTGCCGTAGTGAATCCCAATTGAGTAGT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CATCACTAGGGTGTTTTCTTTTTTGCTGTAGTGAATCCCAGTTGAGTAGT chr2B_3969 CATCACTAGGGTGTTTTCTTTTTTGCTGTAGTGAATCCCAGTTGAGTAGT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------S----------------S-------------S--------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TCACGCACATATGTATGAACCTTGGTTATATATGAAATCTATAGT-GGTC chr2B_1_TraesCS2B01G001800 TCACGCACATATGTATGAACCTTGGTTATATATGAAATCTATAGT-GGTC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCACGCACATATGCATGAACCTTGGCTATATATGAAATCTATAGTTGGTC chr2B_3969 TCACCCACATATGCGTGAAGCTTGGTTATATATGAAATCTATAGTTGGTC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------S------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACGTTGTTTCATGCTATAAAAATTAGGAAGACCTACAGTGTTAGTAATTT chr2B_1_TraesCS2B01G001800 ACGTTGTTTCATGCTATAAAAATTAGGAAGACCTACAGTGTTAGTAATTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACGTTGTTTCATGCTATAAAAATTAAGAAAACCTACAGTGTTAGTACTTT chr2B_3969 ACGTGGTTTTATGCTATAAAAATTAGGAAAACCTACAGTATTAATACTTC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------S----------------S--- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CGAAGCATTGAGGCAAGGCTGTTTTT-TTAATTCGTCACGTGTCAATGAA chr2B_1_TraesCS2B01G001800 CGAAGCATTGAGGCAAGGCTGTTTTT-TTAATTCGTCACGTGTCAATGAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CGAAGCATTGAGGCAAGGCTGTTTTTTTTAATTCGTCACTTGTCAATGAA chr2B_3969 TGAAGCATTGAGGCAAGGCTGGTTTT--TAATTCGTCATTT-TCAATGAA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------------------S---------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGTGAAATCGATATTGCAAAACATAGAGCAAATCCGTATG-TTTCTTTCA chr2B_1_TraesCS2B01G001800 AGTGAAATCGATATTGCAAAACATAGAGCAAATCCGTATG-TTTCTTTCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGTGAAATTGATATTGCAAAACATAGAGCAAATCCGTATG-TTTCTTTCA chr2B_3969 AGTGAAAGCAATATTGCAAAACATAGACCGAATCCCTATATTTTCTTTCA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TCCATAAAATTGCTCTGATACCTC-------------------------- chr2B_1_TraesCS2B01G001800 TCCATAAAATTGCTCTGATACCTC-------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCCATAAAATTGCTCTGATACCTC-------------------------- chr2B_3969 TCCATAAAATTGTTCTGTTCATAGGTAACAGCTTGTTGCGGATGTATGTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 CTCTTGCTATTTACATCTTCAGTTTTCAACTTTTCATAAATGGCGAGTTG chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 GTTCCTTGTAATTGCATTCAAATAGATTCTTTCCAACAAATAAATTCTTC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 TATTCTTGGCTCTGCCTTCAGGACCTATAAGCACTGAGTATGTTTTGAAA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 GCAACCGTTTTATCTCGGGGTCTGCAACGAGAACTTGGTGGGACCCAGTA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 ATGGTTGAAGCCATACACAATCGAAAAAGGATTTTATCCAAACGCATTTC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 AACTAATTGTAGTAAAACCTGGCCTGTTGACATATTTTTTCTTTTTTGCA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 TCATTTACTGGTTTATTTGCTGGTGTGGCCCGACTGGCTTCAGCTTTTGT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 AACCATAATCTGTAGCCCAACCTAACTGGCCACAAGCATGTTTTTGAACA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 TCCACTTGAACTGGATGCCCATATGTTATTTCTTGAAATTGTATTATTTC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -----------------------GTGTTTGTCTGCATTTGCAGCTTTCTT chr2B_1_TraesCS2B01G001800 -----------------------GTGTTTGTCTGCATTTGCAGCTTTCTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -----------------------GTGTTTGTCTGCATTTGCAGCTTTCTT chr2B_3969 CTCATCTGATCTGATACCTTCTAGTGTTTGTCTGCATTTGCAGCTTTCTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACCAAATTGTTGACTCTATGATTTGGCTTGGGATACGTGATAAGATAAAC chr2B_1_TraesCS2B01G001800 ACCAAATTGTTGACTCTATGATTTGGCTTGGGATACGTGATAAGATAAAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACCAAATTGTTGACTCTATGATTTGGCTTGGGATACGTGATATGATAAAC chr2B_3969 ACCAAATTGTCGACTCTATGATTTGGCTTGGGATACGTAATATGATAAAC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------------------------S------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAATTCAGGAAAAAGAAGCTGAAGCTGCGTCCAGTAACATACCTAAGTTG chr2B_1_TraesCS2B01G001800 GAATTCAGGAAAAAGAAGCTGAAGCTGCGTCCAGTAACATACCTAAGTTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GAATTCAGGAAAAAGAAGTTGAAGCTGCGTCCAGTAACATACCTAAGTGG chr2B_3969 GAATTCAGGAAAAAGAAGTTGAAGCTGCGCCCAGTAACATACCTAAGTGG chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------S-----------------------------S- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 ------------------------------------------------TG forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCACAGGGTTCTGGAAGTGACATTCCTCATGGATACATCTGGAGCCCTC chr2B_1_TraesCS2B01G001800 TGCACAGGGTTCTGGAAGTGACATTCCTCATGGATACATCTGGAGCCCTC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCACAGGGTTCTGGAAGTGACATTCCTCATGGATACATCTGGAGCCCTC chr2B_3969 TGCACAGGGTTCTGGAAGTGACATTCCTCATGGATACATCTGGAGTCCTC chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 TGCACAGGGTTCTGGAAG-------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACCTTGTCCCAAAACCGAAAGGTGCTTGATTCATATTAATTTGAGCTGAA chr2B_1_TraesCS2B01G001800 ACCTTGTCCCAAAACCGAAAGGTGCTTGATTCATATTAATTTGAGCTGAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACCTTGTCCCAAAACCGAAAGGTGTTTGATTCATATTAATTTGAGCTGAA chr2B_3969 ATCTTGTCCCAAAACCGAAAGGTGCTTGATTCATATTAATTTGAGCTGTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACTAGACCATGCTTAACCTTGTCTTTCTTGATTGTTTTAATTGCCAATTT chr2B_1_TraesCS2B01G001800 ACTAGACCATGCTTAACCTTGTCTTTCTTGATTGTTTTAATTGCCAATTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACTGGACCATGCTTAACCTTGTCGTTCTTGATTGTTTCAATTGCCAATTT chr2B_3969 GAT----CATTCTTAACCTTGTCGTTCTTAGTTGTGTTGATTGCCA-TTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---S-------------------S-------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GCCAAAGTTAAAAGTAATTTATATGGTCGAATGATCTTGTTTCTATCCCA chr2B_1_TraesCS2B01G001800 GCCAAAGTTAAAAGTAATTTATATGGTCGAATGATCTTGTTTCTATCCCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GCCAAAGTTAAAAGTAATTTATATGGTCGAATGATCTTGTTTCTATCCCA chr2B_3969 TCCAAAGTTAAAGAT-ATTAATATGGTTGAATGATGTTGTTTCTATCCCA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTTTACAGAACAGAATATAGGCAAAGTCAAGATAGTAACAGGTTCATTTG chr2B_1_TraesCS2B01G001800 TTTTACAGAACAGAATATAGGCAAAGTCAAGATAGTAACAGGTTCATTTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTTTACAAAACAGAATATAGGCAAAGTCAAGATAGTAACAGGTTCATTTG chr2B_3969 TTTTACAAAACACAATGTAGGCAAAGTCAAGATAGTACCAGATCCATCTG chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------S------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GTCTTGTGTTTCTCCC----------------------ATTGCATCCTTT chr2B_1_TraesCS2B01G001800 GTCTTGTGTTTCTCCC----------------------ATTGCATCCTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GTCTTGTGTTTCTCCC----------------------ATTGCATCCTTT chr2B_3969 GTCTTATCTTGCGTTTCTCCCTTTACTTTCTTCATATGATTCCATCCTTT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCTAGTATTTAGAAGAATAGCATGTGGTAAGTCAACTAGCTGATGGT-- chr2B_1_TraesCS2B01G001800 TGCTAGTATTTAGAAGAATAGCATGTGGTAAGTCAACTAGCTGATGGT-- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCTAGTATTTAGAAGAATTGGACATGGTAAGTTAACTAGCTGATGGT-- chr2B_3969 TGCTAGTATTTATAAAAATTGAATCTGGTAAGTTAACTTGCTAATGGTTA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------S-S--S--------S---------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGACACCAGTGATGTTGCATACTCGAGTCATTGCAACACTGATTCAAAAT chr2B_1_TraesCS2B01G001800 TGACACCAGTGATGTTGCATACTCGAGTCATTGCAACACTGATTCAAAAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGACACCAGTGATGTTGCATACTCGAGTCATTGCAGCACTCCTTCAGACC chr2B_3969 TGACACCAGTGATGTTGCATACTAGAGTT-TTGCAGCACTCCTTCAAACT chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------------S----SS------S- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TATC--TATATTATGGCAAGCTTAAAATTTTGGGTGC-------TGAGCG chr2B_1_TraesCS2B01G001800 TATC--TATATTATGGCAAGCTTAAAATTTTGGGTGC-------TGAGCG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGTC--TATATTATGGCAAGCTTAAAATTTTGGGTGC-------TGAGCG chr2B_3969 TGTCAATATATTATGGCAAGCTTAAAATTCTGGGTGCAACTAGTTGAGCA chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -S------------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -----------------------------------------GTGCTGAGC reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -TTGCATCGCAATTGCCTCTTTACTACAAGCTAGCAGATTGAAATTTTAG chr2B_1_TraesCS2B01G001800 -TTGCATCGCAATTGCCTCTTTACTACAAGCTAGCAGATTGAAATTTTAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GTTGCATCTCAATTGCCTCTTTACTACAAGCTAGCAGATTGAAATATCAG chr2B_3969 GTTGCATCTCAATTGTCTTTTTACTCCAAGCTGGTAGATTGAAATTTCAG chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------S--------------------------------------S-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 GTTGCATCG----------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAAATGCTGTTATTTAAAATTTAAAATTAGAAGGAAGTGCTTAGTACTTG chr2B_1_TraesCS2B01G001800 GAAATGCTGTTATTTAAAATTTAAAATTAGAAGGAAGTGCTTAGTACTTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GAAATGCTGTTATTTAAAATTTAAAATTAGAAGGAAGTGCTTAGTACTTG chr2B_3969 GAAATGCGACATTGT---------------AAGGAAGTGCTTACTACTCC chrUn_5421 --------------------------------------------TACTTG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTAGAA-------------------------------------------- chr2B_1_TraesCS2B01G001800 CTAGAA-------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTAGAA-------------------------------------------- chr2B_3969 CTCCGCTCCTAAATATATGACGTTTTGGTAGTTCAATTTGAACTACCAAA chrUn_5421 CTAG-A-------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ----------------------------------TATGTGCATACCTTAT chr2B_1_TraesCS2B01G001800 ----------------------------------TATGTGCATACCTTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ----------------------------------TATGTGCATATCTTAT chr2B_3969 ATGTCATATATTTAGGAAAAGAGGGAGTACTTGCTTTGTGCATGTCTTAT chrUn_5421 ----------------------------------TTTGTGCATGTCTTAT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------------------------------------------S----- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CACTGCTAATTATTTAAGGAGCTTCTATAATTCGTGTTCGAGATTATAAC chr2B_1_TraesCS2B01G001800 CACTGCTAATTATTTAAGGAGCTTCTATAATTCGTGTTCGAGATTATAAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CACTGCTAATTATTTAAGGAGCTTCTATAATTCGTGTTCAAGATTATAAC chr2B_3969 CACTGCTAATTAGTAAAGGAGCTTCTATAATCTGTGTT-GAGATTAT-AC chrUn_5421 -ACTGCTAATTAGTTAAGGAGCTTCTATAATTCGTGTT-GAGATTATAAC chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCAGTTGTGAATTGTGGAGTAAATTATTGAGAAAACTATTGCATTGGAA chr2B_1_TraesCS2B01G001800 TGCAGTTGTGAATTGTGGAGTAAATTATTGAGAAAACTATTGCATTGGAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCAGTTGTGAATTGTGGAGTAAATTATTGAGAAAACTATTGCATTGGAA chr2B_3969 TGCAGTTGTGATTTGTTGAGTAGTTTATTGGGAAAACTATAGCATTTGAA chrUn_5421 TGCAGTTGTGATTTGTGGAGTAGTTTATTGGGAAAACTATAGCATTTGAA chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTTTCAGATG-----------------------TTGTTGTTGCTAATGGT chr2B_1_TraesCS2B01G001800 TTTTCAGATG-----------------------TTGTTGTTGCTAATGGT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTTTCAGATG-----------------------TTGTTGTTGCTAATGGT chr2B_3969 TTTTCAGATGGCTTTA-TCCTCAACTCAGTATTTTGTTGTTGTGAATGGG chrUn_5421 TTTTCAGATGGCTTTTGTCCTCAAGTCAGTATTTTGTTGTTGTGAATGGG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTGTG--GCTCAATGTTAAAATTTGTCATCTATTTGAATGCAGACTGGGG chr2B_1_TraesCS2B01G001800 TTGTG--GCTCAATGTTAAAATTTGTCATCTATTTGAATGCAGACTGGGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTGTG--GCTCAATGTTAAAATTTGTCATCTATTTGAATGCAGACTGGGG chr2B_3969 TTG--TAGCTCAATGTTGAAG-TTGTCATCTATTTGAATGCAGACTGGGG chrUn_5421 TTGTATAGCTCAATGTTGAAG-TTGTCATCTATTTGAATGCAGACTGGGG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CCCCAAGATCGATGTTGTTGGATTTTGCTTTCTCGATCTAGCGTCTGATT chr2B_1_TraesCS2B01G001800 CCCCAAGATCGATGTTGTTGGATTTTGCTTTCTCGATCTAGCGTCTGATT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CCCCAAGATCGATGTTGTTGGATTTTGCTTTCTCGATCTTGCGTCTGATT chr2B_3969 CCCCAAGATCGATGTTGTTGGATTTTGCTTCCTTGATCTTGCTTCGGATT chrUn_5421 CCCCAAGATCGATGTTGTTGGATTTTGCTTCCTTGATCTTGCTTCGGATT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------------------S---------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 ---------------------------------------AGCGTCTGATT forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACGTACCACCTGAAGAACTTGTGAAATGGCTTGAAGCAGGTGACAAACCC chr2B_1_TraesCS2B01G001800 ACGTACCACCTGAAGAACTTGTGAAATGGCTTGAAGCAGGTGACAAACCC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACGTACCACCTGAAGAACTTGTGAAATGGCTTGAAGCGGGTGACAAACCC chr2B_3969 ACGT---------------------------------------------- chrUn_5421 ACGTACCTCCTGAAGAACTTGTGAAATGGCTTGAAGCTGGTGACAAGCCA chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------S------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 ACGTACCACC---------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATTTATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTTTCTTATA chr2B_1_TraesCS2B01G001800 ATTTATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTTTCTTATA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATTTATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTTTCTTATA chr2B_3969 -------------------------------------------------- chrUn_5421 ATTTATGTTGGTTTTGGTAGCCTTGTAAGATCAGTTTGACCTTTCTTATA chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTTA---CTGCATGTTGGTTTTAAGTTCCAATATTCCAATTCTGATATGG chr2B_1_TraesCS2B01G001800 TTTA---CTGCATGTTGGTTTTAAGTTCCAATATTCCAATTCTGATATGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTTA---CTGCATGTTGGTTTTAAGTTCCAATATTCCAATTCTGATATGG chr2B_3969 -------------------------------------------------- chrUn_5421 TTTATTACTGCATGTCGTTTTTAAGTTCCATTTTTCCAATTCTGATATGG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGCATTATTTGACCTGCTCTGTTTAACTTATTGTACTGATATGGTGCAAA chr2B_1_TraesCS2B01G001800 TGCATTATTTGACCTGCTCTGTTTAACTTATTGTACTGATATGGTGCAAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCATTATTTGACCTGCTCTGTTTAACTTATTGTACTGATATGGTGCAAA chr2B_3969 -------------------------------------------------- chrUn_5421 TGCATTATTTGACCTACTGTGTTCAACTTATTGTACTGCCTGGCAAGAT- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACAGGGTTAGTTATGTAGTTGCATAGCGGATCTTTCTTGATTACCCAGAT chr2B_1_TraesCS2B01G001800 ACAGGGTTAGTTATGTAGTTGCATAGCGGATCTTTCTTGATTACCCAGAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACAGGGTTAGTTATGTAGTTGCGTAGCGGATCTTTCTTGATTACCCTGAT chr2B_3969 -------------------------------------------------- chrUn_5421 --AGGGTTAGTTGCTTAGTTGCAAAGGGAATCTTTCTTAATTACCCTGAT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------------------------S--- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GCCATTGGCAGTGAATGCACTTTGTGGATTAGTGAAACTCTTCATGTTTT chr2B_1_TraesCS2B01G001800 GCCATTGGCAGTGAATGCACTTTGTGGATTAGTGAAACTCTTCATGTTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GCCATTGGCAGTGAATGCACTTTGTGGATTAGTGAAACTCTTCATGTTTT chr2B_3969 -------------------------------------------------- chrUn_5421 GTCATTGGCAGTGAATACACTTTGTGGATTAGTGGAACTTTCCATGTTTT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACAGCAGAAAGCGACTTTGCACATGCTTTTTTTTTCACTACCTACAGTAT chr2B_1_TraesCS2B01G001800 ACAGCAGAAAGCGACTTTGCACATGCTTTTTTTTTCACTACCTACAGTAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACAGCAGAAAGCGACTTTGCACATGCT-TTTTTTTCACTACCTACAGTAG chr2B_3969 -------------------------------------------------- chrUn_5421 ACAGCAGAAAGTGGCTTT----ATGCATTTTTTCCCACTA---------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------S forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TAATAAGAAGCTGGTTTGCCACTTGGAATCTTTGTAGCATCTCACAGTAG chr2B_1_TraesCS2B01G001800 TAATAAGAAGCTGGTTTGCCACTTGGAATCTTTGTAGCATCTCACAGTAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAATAAGAAGCAAGTTTGCCACTTGGAATCTTTGTAGCATCTCACAGCAG chr2B_3969 -------------------------------------------------- chrUn_5421 ---TAAGAAATTGGTTTGCTACTTGGAATCTGTGCAGCATCTCATAGAAG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AAGAAGTTATTTGTGTGCTTTAGGCGGAGGGTAGTTTAGCTCGATAGTTT chr2B_1_TraesCS2B01G001800 AAGAAGTTATTTGTGTGCTTTAGGCGGAGGGTAGTTTAGCTCGATAGTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AAGAAGTTATTTGTGTGCTTTAGGCGGAGGGTAGTTTAGCTCTATAGTTT chr2B_3969 -------------------------------------------------- chrUn_5421 AAG---TTATTCGTGTGCTTTAGGCAGAGGGTAGTTTAGCTCTATAGTTT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------------------------S------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -----------------------GCGGAGGGTAGTTTAGCTCG------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGTAGCTCTAGTTAGTTAGGGGAATTGTTACTAATTCAAATAGGGGTTTG chr2B_1_TraesCS2B01G001800 AGTAGCTCTAGTTAGTTAGGGGAATTGTTACTAATTCAAATAGGGGTTTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGTAGCTCTAGTTAGTTAGGGGAATTGTTACTAGTTCAAATAGGGGTTTG chr2B_3969 -------------------------------------------------- chrUn_5421 GTAGCT--TAGTTAGTTAGGGGAATTGTTACTAATTCAAACAGGGGGTTT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTGTTA----------------ACATTACATCTAAAAAA-ATAGTCTCAA chr2B_1_TraesCS2B01G001800 CTGTTA----------------ACATTACATCTAAAAAA-ATAGTCTCAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTGTTA----------------ACATTACATCTAAAAAA-ATAGTCTCAA chr2B_3969 -------------------------------------------------- chrUn_5421 GCAATGCTAGGTGCCAATTGTTACATTACATCTAAAAAAGATAGTCTCAA chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTAACTGTGAAATTTAAAATTCAG--ATGCTAGGTGCTTTTGAAAAGCCA chr2B_1_TraesCS2B01G001800 CTAACTGTGAAATTTAAAATTCAG--ATGCTAGGTGCTTTTGAAAAGCCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTAACTGTGAAATTTAAAATTCAG--ATGCTAGGTGCTTTTGAAAAGCCA chr2B_3969 -------------------------------------------------- chrUn_5421 CTAACTGTGAAATTTAATAAAAATTAATGCTAGGTGCTTTTGAAAAGCCA chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CCATAATAACTTACCTGATTCTTTCAATTTTTTTT-----ATACACTAGC chr2B_1_TraesCS2B01G001800 CCATAATAACTTACCTGATTCTTTCAATTTTTTTT-----ATACACTAGC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CCATAATAACTTACCTGATTCTTTCATTTTTTTTT--CTGATACACTAGC chr2B_3969 -------------------------------------------------- chrUn_5421 CTATAATGCCTTACCTAATTCTTTACAAAAAAAATTCCTGATACACTAGC chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CAGTTCAAGATCCAGCAAAGATGATTGAAACCATTGTCAAGGCACTCGAA chr2B_1_TraesCS2B01G001800 CAGTTCAAGATCCAGCAAAGATGATTGAAACCATTGTCAAGGCACTCGAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CAGTTCAAGATCCAGCAAAGATGACTGAAACCATTGTCAAGGCACTCGAA chr2B_3969 -------------------------------------------------- chrUn_5421 CAGTTCAAGATCCAGCAAAGATGACTGAAACCATTGTCAAAGCACTCGAA chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ------------------------S------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATGACTGGACAGAGAGGTATCATTAACAAGGGTTGGGGTGGTCTCGGAAC chr2B_1_TraesCS2B01G001800 ATGACTGGACAGAGAGGTATCATTAACAAGGGTTGGGGTGGTCTCGGAAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATGACTGGACAGAGAGGTATCATTAACAAGGGTTGGGGTGGCCTCGGAAC chr2B_3969 -------------------------------------------------- chrUn_5421 ATGACTGGACAGAGAGGTATCATCAACAAAGGTTGGGGTGGCCTTGGAAC chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------------------S-------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 ----------------------TTAACAAGGGTTGGGGTGGT-------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATGTAAGTTCATCTTGTTATTTGTGAGCATGTTGCACTATTTGGTTGTGG chr2B_1_TraesCS2B01G001800 ATGTAAGTTCATCTTGTTATTTGTGAGCATGTTGCACTATTTGGTTGTGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATGTAAGTTCATCTTATGATTTGTGAGCATGTTGCACTATTTGGTTGTGG chr2B_3969 -------------------------------------------------- chrUn_5421 ATGTAAGTTCATCTTGTGATTTGTGGGAATGTTGCACTATTTGGTTGTGG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GCATATATTTTGAGTCCATCCTGAGTATTGAAC--------CTTTT-CAG chr2B_1_TraesCS2B01G001800 GCATATATTTTGAGTCCATCCTGAGTATTGAAC--------CTTTT-CAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GCATATATTTTGAGTCCATCCTGAGTCTTGAAC--------CTTTTGCAG chr2B_3969 -------------------------------------------------- chrUn_5421 GCATATATTTTGAGTCCATCCCGAGTTCTTGAACCTTTGGGCTTTTGTAG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------------------------S----------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGGTAGAACCAAAAGACTCCATATATGTTCTTGACAACTGCCCTCACGAC chr2B_1_TraesCS2B01G001800 TGGTAGAACCAAAAGACTCCATATATGTTCTTGACAACTGCCCTCACGAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGGCAGAACCAAAAGATTCCATATATGTTCTTGACAACTGCCCTCACGAC chr2B_3969 -------------------------------------------------- chrUn_5421 TGGCAGAACCAAAAGATTCCATATATGTACTTGACAACTGCCCTCATGAC chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---S------------S--------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGGCTTTTCCTGCAGTGTAAGGCAGTGGTAAGCCTTTT---CTTGTTACT chr2B_1_TraesCS2B01G001800 TGGCTTTTCCTGCAGTGTAAGGCAGTGGTAAGCCTTTT---CTTGTTACT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGGCTTTTCCTGCAGTGTAAGGCAGTGGTAAGCCTTTT---CTTGTTACT chr2B_3969 -------------------------------------------------- chrUn_5421 TGGATTTTATTGCAGTGTAAGGCAGTGGTAAGCCTTTGCTACTTGTTACT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTTGGTGGCTTAGTGCATGGATCATATTATGTTTCATTCGTATAGTACTT chr2B_1_TraesCS2B01G001800 CTTGGTGGCTTAGTGCATGGATCATATTATGTTTCATTCGTATAGTACTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTTGGTGGCTTAGTGCATGGATCATATTATGTTTCATTCGTATAGTATTT chr2B_3969 -------------------------------------------------- chrUn_5421 CTTGGTGGATTGGTGCATGAAGTGTATTATCTTTAATTCATATAGTATTT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TTAGTGATCATCAAATATC---GAATGTTTCCTGATTTTGCAAAACTAAT chr2B_1_TraesCS2B01G001800 TTAGTGATCATCAAATATC---GAATGTTTCCTGATTTTGCAAAACTAAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTATTGATCATCAAATATC---GAATGTTTCCTGATTTTGCAAAACTAAT chr2B_3969 -------------------------------------------------- chrUn_5421 TTGGTGATCATCAATCAATTCTGAATGTTTCCTATTTTTGTAAAACTAAT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TAACCAACAGTTTTCATGGGTCATACTTGAGAAAATTTGGTGAAAGAACT chr2B_1_TraesCS2B01G001800 TAACCAACAGTTTTCATGGGTCATACTTGAGAAAATTTGGTGAAAGAACT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAACCAACAGTTTTCATGGGTCATACTTAAGAAAATTTGGTGAAAGAACT chr2B_3969 -------------------------------------------------- chrUn_5421 TAACAAACAATTTCCATGGGGCATA-TTAAGAAAATCTAGTGAAAGAACT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ----------------------------S--------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CCAGTGTTGGCACTATGGTGCTAATAGTGTCTGTTTATTCTGTTGAGAGG chr2B_1_TraesCS2B01G001800 CCAGTGTTGGCACTATGGTGCTAATAGTGTCTGTTTATTCTGTTGAGAGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CCAGTGTGGCCACTATGGTGCTAATAGTGTCTGTTTATTCTGTTGAGAGG chr2B_3969 -------------------------------------------------- chrUn_5421 CCAGTGTGGCCACCATGGTGCTAACAGTGTCTGTTTATTCTGTTGAGAGG chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------S-S---------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AA-GCTCACACCTTTTTGTACCTCCGCAGGTACACTATGGTGGTGCTGGA chr2B_1_TraesCS2B01G001800 AA-GCTCACACCTTTTTGTACCTCCGCAGGTACACTATGGTGGTGCTGGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AAGGCTCACACCTTTTTGTACCTCCACAGGTACACCATGGTGGTGCTGGA chr2B_3969 -------------------------------------------------- chrUn_5421 AGGGCTCACACTTTTTTGTACCTC-ACACGTACACCATGAAAGCAG---- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------S---------S-------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -----------------------------------TATGGTGGTGCTGGA forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACGACGGCTGCCGGCCTGAAAGCAGCGGTACTCTCTCTCTCTCTCTCTCT chr2B_1_TraesCS2B01G001800 ACGACGGCTGCCGGCCTGAAAGCAGCGGTACTCTCTCTCTCTCTCTCTCT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACGACGGCTGCCGGCCTGAAAGCAGCGGTACTCTCTCTCTCTCTCTCTCT chr2B_3969 -------------------------------------------------- chrUn_5421 -----------CGGCCTGAAAGCAGCGGTACTCTCTCTCTCTCTCTCTCT chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 ACGAC--------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTCTCTCTCTCTCTCTGTTGCACTACGGTACGAGCTATTCATCACAATGC chr2B_1_TraesCS2B01G001800 CTCTCTCTCTCTCTCTGTTGCACTACGGTACGAGCTATTCATCACAATGC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 C------------------GCACTACGTTACGAGCTATTCATTAGAATGC chr2B_3969 -------------------------------------------------- chrUn_5421 CTCTCTCTCTCTCT------------------------------------ chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------------SSSSS--------S--------------S-S----- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CACATGACTTCCACACTATTCTTGATGCAACTACAATATTACTTTTTCTA chr2B_1_TraesCS2B01G001800 CACATGACTTCCACACTATTCTTGATGCAACTACAATATTACTTTTTCTA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CACATGACTTCCACACTATTCTTGATGCAACTACAGTATTACTTTTCC-A chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 ------------------------------------------TTTTTC-A chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -----------------------------------S------------S- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGCCAATTATTGTTAGGTAGAGTTAGAATCAGCTGAAAACAATTCCTGAT chr2B_1_TraesCS2B01G001800 AGCCAATTATTGTTAGGTAGAGTTAGAATCAGCTGAAAACAATTCCTGAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGCCAATTATTGTTAGGTAGAGTTAGCATCAGCTGAAAACAATTCCTGAT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 AGCCAATTATTGTTAGGTAGAGTTAGAATCAGTTGAAAACAATTCCTGAT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CAGGGCATGCCTGCAGTTGCCA--GAGACAACTTTTATTAGCAGCATTT- chr2B_1_TraesCS2B01G001800 CAGGGCATGCCTGCAGTTGCCA--GAGACAACTTTTATTAGCAGCATTT- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CAGGGCAAGCCTGCAGTTGCTA--GAGACATCTTTTGTTCGCAGCATTT- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CAGGGCATGCCTGCAGTTGCCAATGAGACAACTTTTATTAGCAGCATTTT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CTCTGTTTTTTTAGGGAAACAGCAGGACTACGCTGCGTATTTTTATTAAT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TTTAAATAAATTGTACAGGCAAGTGTTTTACAAAAGCATAAAAAGAAAAT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 --------------ACTCTTAGAACTAGCTAAGCAACTGGCAAAACTAGC chr2B_1_TraesCS2B01G001800 --------------ACTCTTAGAACTAGCTAAGCAACTGGCAAAACTAGC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 --------------ACTCTTATAACTAGCTAAGCAACTGGC--AACTAGC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 AAAGACTATACAGAACTCTTATAACTAGCTAAGCAACTGAC--AACT-GC chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------S-------------------SS------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ACCTGATCATAATATTTGCTATTTTTA-GACCAGTTCTTATATTTAGTTT chr2B_1_TraesCS2B01G001800 ACCTGATCATAATATTTGCTATTTTTA-GACCAGTTCTTATATTTAGTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ACCTGATCATAATATTTGCTATTTTTG-GACCAG---TTATATTTAGTTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 ACCTGATCATAATATTTGCTATTTTTTGGACCAGTTCTTATATTTAGTTT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs --------------------------S----------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AGTTCTAGCCCAGTGTTTTGGTGATTTGTAGTGTCCTACAACTATTGTAC chr2B_1_TraesCS2B01G001800 AGTTCTAGCCCAGTGTTTTGGTGATTTGTAGTGTCCTACAACTATTGTAC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AGTTCTAACCCAGTGTTTTGGTGATTTGTAGTGTCCTACAACTATTGTAC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 AGTTCTAACCCACTGTTTTGGTGATTT-TAGTGTCCTACAACTTTTGTAC chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------S------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTTTCTTTGGCGACCAACCATTCTGGGGAGAGCGGGTGCATGCTAGAGGG chr2B_1_TraesCS2B01G001800 CTTTCTTTGGCGACCAACCATTCTGGGGAGAGCGGGTGCATGCTAGAGGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTTTCTTTGGCGACCAACCATTCTGGGGAGAGCGGGTGCATGCTAGAGGG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CTTTCTTTGGTGACCAACCTTTCTAGGGAGAACGGGTGCATGCTAGAGGG chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GTAGGGCCTTCGCCTATACCGGTTGATCAATTCACTTTGTAGAAGTTGGT chr2B_1_TraesCS2B01G001800 GTAGGGCCTTCGCCTATACCGGTTGATCAATTCACTTTGTAGAAGTTGGT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GTAGGGCCTTCGCCTATACCGGTTGATCAATTCACTTTGCAGAAGTTGGT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 GTAGGGCCTTCGCCTATACCCGTTGATCAATTCAATTTGCAGAAGTTGGT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------------------------------S---------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGATGCTATAAAATTTATGTTGGATCCAGAGGTAACTCTACAAATTCTTT chr2B_1_TraesCS2B01G001800 TGATGCTATAAAATTTATGTTGGATCCAGAGGTAACTCTACAAATTCTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGATGCTATAAAATTCATGTTGGATCCAGAGGTAACTCTACAAATTCTTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TGATGTTATAAACTTCATGTTAGATCCAGAGGTAACTGTACAATTTTTCT chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs ---------------S---------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GC-CTTGGGCAGATGAGACTTTTTCTTTTGTTTCATATCGCAAAAATAGA chr2B_1_TraesCS2B01G001800 GC-CTTGGGCAGATGAGACTTTTTCTTTTGTTTCATATCGCAAAAATAGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GCGCTTGGGCAGATGAGACTTTTTCTTTTGTTTCATATCGCAAAAATAGA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 GCACTTGGGCATATGTTACTTTTCCTTTTGTTTCATAGCGAAAAAATAGA chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TAACAAGAATATGGACACAGATGTGCATAGGTAGGCTGCAGGCAGTGTTA chr2B_1_TraesCS2B01G001800 TAACAAGAATATGGACACAGATGTGCATAGGTAGGCTGCAGGCAGTGTTA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAACAAGAATATGGACACAGATGTGCATAGGTAGGCTGCAGGCAGTGTTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TAACAATAATATGGACACAGATGTGCATAGATAGGCTGCAGGTAATGTCA chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CAGATATGGTTATGG-------TATACTGATGTACAAAATTGCTAGATTG chr2B_1_TraesCS2B01G001800 CAGATATGGTTATGG-------TATACTGATGTACAAAATTGCTAGATTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CAGATATGGTGATGA-------TATACTGATATACAAAATTGCTAGATTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CAGATATGGTTATGAATTATGATATACTTATATACAAAATTGCTAGATTC chr2B_7496 ----------------------------------------------ATTG chr2B_8057 -------------------------------------------------- SNPs --------------S----------------S------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TCACCTTGATAATTAGAAGTTTTGAAC------CCCATGATCCATCCACC chr2B_1_TraesCS2B01G001800 TCACCTTGATAATTAGAAGTTTTGAAC------CCCATGATCCATCCACC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TCACCTTGATAATTACTCCCTCCGTTCCTAATTTCGCT------------ chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TCACCTTGATAATTAGATGTTTAGAACATTACACCCATGATCCATCCACC chr2B_7496 TCACCTTGATAATTAGAAGTTTAGAACCTTACACCCATTATCCATCCACC chr2B_8057 -------------------------------------------------- SNPs ----------------------S--------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 ----------------------TGAACCCCATGATCCATCCAC------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATTTAAGACCTTCACCGTGTTTTACATGAAGACTTCATCCAAATATACTT chr2B_1_TraesCS2B01G001800 ATTTAAGACCTTCACCGTGTTTTACATGAAGACTTCATCCAAATATACTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 ATTTAAGACCTAGAACG-TTTTTACATGAAGACTTCATCCGAATATACTT chr2B_7496 CTTTAAGACTTTCACCATTTTTTACATGAAGACTTCATCCAAATATACTT chr2B_8057 -------------------------------------------------- SNPs ------------------S------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TGTTTTAGTGCTTCCTCTCTGAGAATATATCGATTCCTGTAGTCAAGATG chr2B_1_TraesCS2B01G001800 TGTTTTAGTGCTTCCTCTCTGAGAATATATCGATTCCTGTAGTCAAGATG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TGTTTTACTGCTTCCTCTC-----------------------------TG chr2B_7496 TGTTTTTGTGCTTCCTCTCTGAGAATATATCGATTCCTGTAGTCAAGATG chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AATGACCATTTACTTGAGTTTTTGGAATGATTCTGTTGTCGTCGGTAACT chr2B_1_TraesCS2B01G001800 AATGACCATTTACTTGAGTTTTTGGAATGATTCTGTTGTCGTCGGTAACT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 AATGACCATTTACTTGAGTTTTTGGAAAGATTCTGTCACCGTCGGCTACT chr2B_7496 AACAACCATTTACTTGAGTTTTTGAAAAGACACTGTTGTCATCGGTAACT chr2B_8057 -------------------------------------------------- SNPs ---------------------------S---------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TACCAGTGCATTCGTAGTTTGGTACCCAGCAGGGTTCCAAAAGCCAGGAA chr2B_1_TraesCS2B01G001800 TACCAGTGCATTCGTAGTTTGGTACCCAGCAGGGTTCCAAAAGCCAGGAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ----GGTGCATTCGTAGTTTGGTACCCAGCATGGTTCCAAAAGCCAGGAA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TACCGGTGTATTGGTAGTTTGGTACCCAACATGGTTCCAAAAACCAAGAA chr2B_7496 TACCAGTGCATTGGTAGTTTGGTACCTAGCAGGATTCCAAAAGCCAGGAA chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CAAACTGGTTACTGCC-AAGAAACAGGAACCGG------------TCTGG chr2B_1_TraesCS2B01G001800 CAAACTGGTTACTGCC-AAGAAACAGGAACCGG------------TCTGG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAGACTGGTTACTGCC-AAGAAACAGGAACCGG------------TCCG- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CTGACTGGTTACTGCCCAAGAAGCAGGAACCCG------------TCTGG chr2B_7496 CAGACTGGTTACTGCC-AAGAAACAGGAACCCGGTCTGGTTCTATTCCT- chr2B_8057 -------------------------------------------------- SNPs --S----------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 --------------------------------AAACAGGAACCGGTCTGG reverse_19811 -------------------------------------------------- input_sequence_1411 CTCCATTCCCTTAAATTGGATAGTTAGAATGTTCAAATTCAGATATTAAG chr2B_1_TraesCS2B01G001800 CTCCATTCCCTTAAATTGGATAGTTAGAATGTTCAAATTCAGATATTAAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ----------TTAAATTGGATAGTTAGAATGTTCAAATTCAGATATTAAG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TTCCATTCCC--AAATTGAATCTTTAGAATGTTCAAATTCAGATCTTAAG chr2B_7496 ----------TTAAATTGGATAATTAGAATGTTCAAACTCAGATCGTAAG chr2B_8057 -------------------------------------------------- SNPs S------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 C------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTCTCAGATTGGAACATCTTTGGGAC----ATATACACAAATCAGTACAA chr2B_1_TraesCS2B01G001800 CTCTCAGATTGGAACATCTTTGGGAC----ATATACACAAATCAGTACAA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTCTCAGATTGGAACAGCTTTGGGAC----ATATACACAAATCAGTACTA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TTCTCAAATTGGACCGGCTTTGGGACTTATATATACACAAATCAGTACTG chr2B_7496 TTCTCAAATTGGAACGGCTTTGGGAC----ATATACACAAATCAGTACTA chr2B_8057 -------------------------------------------------- SNPs S---------------S-------------------------------S- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 AACTAAACTTCCCTGATTCAGAACTTATTTATAACTCACTAGTTTG---- chr2B_1_TraesCS2B01G001800 AACTAAACTTCCCTGATTCAGAACTTATTTATAACTCACTAGTTTG---- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 AACTAAACTTCCCTGATTCAGAACTTATTTATAACCCACTAGTTTG---- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 AATTAGC-----------------------------------TTTG---- chr2B_7496 AACTAAACTTCCCTGATTCAGAACTTATTTATAACACACTAGTTTGTATA chr2B_8057 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TATGATCTCCTGTTGGTAGAATTACAGCAAACATGTATTTTCCCCATGTG chr2B_1_TraesCS2B01G001800 TATGATCTCCTGTTGGTAGAATTACAGCAAACATGTATTTTCCCCATGTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TATGATCTCCTGTTGGTAGAATTACAGCAAACATGTATTTTCCCCATGTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TATGATCTCCTGTTGGTAAAATTACAGCATAAATAGCTTCCCATGTGA-- chr2B_7496 TATGATCTCCTGTTAGTAAAATTACAGGAAACATGTATTTTCCCACGC-G chr2B_8057 -------------------------------------------------- SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ATTTTTAGGTGAAAGAAAAGGCCGTGGAGCTTGCCAAGGCCATGGAATCA chr2B_1_TraesCS2B01G001800 ATTTTTAGGTGAAAGAAAAGGCCGTGGAGCTTGCCAAGGCCATGGAATCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 ATTTTCAGGTGAAAGAAAAGGCTGTGGAGCTTGCCAAGGCCATGGAATCA chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 --TTTCAGGTGAAAGAAAAGGCCGTGGAGCTTGCCAAGGCCATGGAATCT chr2B_7496 ATTTTCAGGTGAAAGAAAAGGTTGTGGAGCTTGCCAAGGCCATGGAATCA chr2B_8057 -------------------------------------------------- SNPs -----S-------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 GAAGACGGTGTAACGGGCGCAGTCAGGGCATTCCTCAAACACCTGCCCTG chr2B_1_TraesCS2B01G001800 GAAGACGGTGTAACGGGCGCAGTCAGGGCATTCCTCAAACACCTGCCCTG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GAAGACGGTGTAACGGGCGCAGTCAGGGCATTCCTCAAACACCTGCCCTG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 GAAAACGGCGTAACGGGCGCAGTTAGGGCATTTCTGAAACATTTGCCTTG chr2B_7496 GAAGACAGTGTCAGGGGTGCAGTCAGGGCATTCCTCAGACACCTGCCCTG chr2B_8057 -----------------------------ATTCCTCAAACATCCACCATG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 TAAAACAGACGAAAA-TTCACCCCCACCAATGCACGGCTTTCTAGAGTTC chr2B_1_TraesCS2B01G001800 TAAAACAGACGAAAA-TTCACCCCCACCAATGCACGGCTTTCTAGAGTTC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TAAAACAGATGAAAA-TTCACCCCCACCAACGCACGGCTTTCTAGAGTTC chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TAAAACAGATGAAAA-TTCACCCCCGCCTACGCATGGCTTTCTAGAGTTC chr2B_7496 TAAAACGGATGAAAAATTCACCCCCACAAACGCACGACTTTCCAGAGTTC chr2B_8057 TAAAACTGATGAAAA-TTCACCCCCACAAACGCAAGGCTTTCTAGAGTTC SNPs ---------S--------------------S------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 ---------CGAAAATTCACCCCCACCAA--------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 CTAGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAG-------------- chr2B_1_TraesCS2B01G001800 CTAGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGATG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CTAGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGATG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CTAGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGATG chr2B_7496 CTAGGCCCAGTATGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGATG chr2B_8057 CTAGGCTCAGTAACTAAATGTTTGGGGTGCTCGTAGGTGCTTGTCAGATG SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 CAGGTATACCATTCCTCCTTGTTGAACGGAGAGTGTAAAAAATGGCC-CT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 CAGGTATACCATTCCTCCCTGCTGAAAGAAGAGTGTAAAAAAAGGCT-CT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 CAGGCATACTATTACTCCTTGCTGAAAGAAGAGTGTAAAAAA-GGCT-CT chr2B_7496 CAGGTATACCATTCCTCCCTGCTGAACGATGAATGTAAAAAAAGGTG-CT chr2B_8057 CAGGTACACCATTCCTCCCTGTTGAGTGGAGAGAGTAAAAAA-TGGCCCT SNPs ------------------------------------------S------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GGGGCGACGCGCTATGCTATCTTGCGCTATAAAAATGGCCCT-------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGGGTGAC-CGCTATGCCATTGTGTGCGATAAGAATGTGGAAGCCAAATG chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TGGATGAC-CGCTATGCCATTCTGTGCGATAAGAATGTGGATGCCAAATG chr2B_7496 GG------------------------------------------------ chr2B_8057 GGGGCAACACACTATGCTATTTTGCGTGATAAGAATGTGGAAGCCCACAC SNPs --------S-----------S------S----S----SSSS--------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -----GGAGTTGAAGAA--CATGTGGCCGGGAGCGCATGATTTGTCGTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TTAGAAGTTGATGTACATGCATGCGACCAGGAGCCCGTGATTTATCGTTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TTAGAAGTTGATGTACATGCATGCGACCAGGAGCCCATGATATATCATTT chr2B_7496 -------------------------------------------------- chr2B_8057 TGTAGGGAGTTGAAGAA--CATGTGGTGGGGAGCGCGTGATTTGTCATTT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TGCGTCTTT-CCTTTGCGTTGGGTTCTTTTGTGGTGTGTAAAGAGTGCTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 TGCGTTTTTTTGTATG-------------TGTGTTGTGTAAAGAGTATTT chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 TGCG-TTTTTTGTATG-------------TGTGTTGTGCAAAGAATATTT chr2B_7496 -------------------------------------------------- chr2B_8057 TGCG-TCTTTCCTTTGTGTTAGGTTCTTTTGTGTTGTGTAAAGAGTGATT SNPs -----S----------S---S------------S-------------S-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GTCTGGTGATTTG-ATACATCATTTTGGTGTGGTTGCAACATTGGCCTGC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 GTCTGATGATTTTAATACATCATTTTGGTGTGGTTGCA------------ chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 GTCTGGTGATTTTAATACATCATTTTGGTGTGGTTGCAACCTTGGTCCGT chr2B_7496 -------------------------------------------------- chr2B_8057 GTCTGGTGATTTG-ATAC-TCATTTTGGTGTGATTGCAACATGGGCCCGC SNPs -----------------------------------------------S-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AGAG--CAACCGATGATCTCGCATGTATGACCAGGCAACCTGTGTATAT- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 --AG--CAACCGATGATCTCTCATGTATGACCTAGCAACCTGTGTATATG chr2B_7496 -------------------------------------------------- chr2B_8057 --AGAGCAACCGATGATCTCGCATGTATGACCAGGCAACCTGTGTATAT- SNPs SS------------------------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GAAAACTTGAAAGATC---ACAGATTAGTCCAGTTACTCCTTTTGCAGTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 GAGAACTTGAAAGAGGGCGGCAGATTAGTTCAGTTGCTCCTTTGTCAGTT chr2B_7496 -------------------------------------------------- chr2B_8057 GAAAACTTAAAAGAGA---GCAGATTAGTCCAGTTACTCCTTTTGCAGTT SNPs --------------SS---S------------------------------ forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TACGATATGATATGATTTGATTTGAAAGTGATAGACACCG--TCGTTTCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 T------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TACGATATGATATGATTTGATTTGAAAGTGCTAGACACGTCATCGTTTCA SNPs ------------------------------S-------SS---------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AGTTCTTCCTAGTTCTGCTACCGGCCTTT--TTTTTGAAGATATAGTGGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AGTTCTTCCTAGTTTTGCTACCGGCCTTTATTTTTTAAAGATACAGTAGA SNPs --------------S---------------------S------S---S-- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AATCCGTGACCTCTTGCAGGGAAAAAGTAGTTTTTAAAACTAGTTACTGC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AATTTGTTAGCTCTTATAGGGG-AAAGTTGGTTTTTAAACTAGTTACTGC SNPs ---SS--S-S-----SS----SS-----S-S----S-------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 A------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ACCATGGATTCTCTGTCCTTTTCCCCCATGTTTACAAAACACGTGATATA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 ATTCAGGGATGAAAGCCAGGGTATATCATGTGCATCTCTGCAAAACCTTT SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 -------------------------------------------CCTTTTA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 TAAAGTGACTTCTAGTGTCAAAAAGGACAACCCTACGGCTAAACCTTTTA SNPs -------------------------------------------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 AAATGACTTCTAGTGTCAAAAAAGACAACTCTATGGCTATATAACTCGAG chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 AACTGACTTCTAGTGTCAAAAAAGACAACTCTACGGCTATATAACTCGAG SNPs --S------------------------------S---------------- forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 CATTATTTGTTTATATCTCAATGTTTTTTCCTGCAAAAAAAATGATCATA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 CATTATTCATTTATATCTCAA----------------------------- SNPs -------SS------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TTTTTTGATGAAAATTTAGAAGTTCATGGCAAGAGGTGAACTGTATTTTC chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 CATTAAACATTTGTCTATGTGGGCGTCTGATAGGTGTGTACAATGTGTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TTGTTTTAGGTTTCTAGTTTTTGCAGAAAGAAAAATTTAAAAATTACCCA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 TCAATATGAGACAGGGCCCAAGTGTGAAAATTTAGAAGTTCATGGCAAGA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 ----------ACAGGGCCCAAGTGTGAAAA-------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GGTGAACTGTATTTTCCATTAATACAAGACGTTTTGGCAGTTTAATTTTA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GCTGAGGAAAAATAGCAATTGCGCATTAGGTGCTCGCTTGTTGCGCACAT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GAACGGCTGTCCCTTTCTCCCTTATTGCGCATCAGGTATTCTAGACTCTA chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 -------------------------------------------------- chr2B_1_TraesCS2B01G001800 GATTACTCCCTCCGTCCCACAATATAAGAGCATTTTGCAAGTTTTTTTTT chr2D_1 -------------------------------------------------- chr2B_2 -------------------------------------------------- chr2A_4 -------------------------------------------------- chr2B_5 -------------------------------------------------- chr2D_5 -------------------------------------------------- chr2B_13 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2B_31 -------------------------------------------------- chr2D_418 -------------------------------------------------- chr2A_548 -------------------------------------------------- chr2A_676 -------------------------------------------------- chr2B_691 -------------------------------------------------- chr2D_2046 -------------------------------------------------- chr2B_3969 -------------------------------------------------- chrUn_5421 -------------------------------------------------- chrUn_6970 -------------------------------------------------- chr2B_7496 -------------------------------------------------- chr2B_8057 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_6313 -------------------------------------------------- reverse_10535 -------------------------------------------------- forward_6456 -------------------------------------------------- reverse_10731 -------------------------------------------------- forward_10321 -------------------------------------------------- reverse_11405 -------------------------------------------------- forward_10772 -------------------------------------------------- reverse_12917 -------------------------------------------------- forward_12352 -------------------------------------------------- reverse_15299 -------------------------------------------------- forward_13981 -------------------------------------------------- reverse_16190 -------------------------------------------------- forward_15759 -------------------------------------------------- reverse_17386 -------------------------------------------------- forward_16643 -------------------------------------------------- reverse_18223 -------------------------------------------------- forward_16942 -------------------------------------------------- reverse_18810 -------------------------------------------------- forward_18501 -------------------------------------------------- reverse_19811 -------------------------------------------------- input_sequence_1411 ------ chr2B_1_TraesCS2B01G001800 TTGAAC chr2D_1 ------ chr2B_2 ------ chr2A_4 ------ chr2B_5 ------ chr2D_5 ------ chr2B_13 ------ chr2B_31 ------ chr2B_31 ------ chr2B_31 ------ chr2D_418 ------ chr2A_548 ------ chr2A_676 ------ chr2B_691 ------ chr2D_2046 ------ chr2B_3969 ------ chrUn_5421 ------ chrUn_6970 ------ chr2B_7496 ------ chr2B_8057 ------ SNPs SSSSSS forward_6313 ------ reverse_10535 ------ forward_6456 ------ reverse_10731 ------ forward_10321 ------ reverse_11405 ------ forward_10772 ------ reverse_12917 ------ forward_12352 ------ reverse_15299 ------ forward_13981 ------ reverse_16190 ------ forward_15759 ------ reverse_17386 ------ forward_16643 ------ reverse_18223 ------ forward_16942 ------ reverse_18810 ------ forward_18501 ------ reverse_19811 ------